Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009549.1 Hibiscus syriacus cultivar Beakdansim tig00116435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73112
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Found at i:3931 original size:33 final size:32
Alignment explanation
Indices: 3894--3982 Score: 99
Period size: 33 Copynumber: 2.8 Consensus size: 32
3884 GCGTGAGCCC
*
3894 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
3927 CGGTCACCATC-GCAAAACCATAACGGGTGTCT
1 CGGTCACCATCGGCAAACCCA-GGCGGGTGCCT
*
3959 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
3983 CATTGGTGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
32 22 0.49
33 23 0.51
ACGTcount: A:0.21, C:0.37, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:4070 original size:32 final size:32
Alignment explanation
Indices: 4029--4161 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
4019 GTGCGTGAGG
* *
4029 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
4061 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
4093 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
4125 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
4157 CTCGG
1 CTCGG
4162 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:4305 original size:62 final size:62
Alignment explanation
Indices: 4208--4339 Score: 248
Period size: 62 Copynumber: 2.1 Consensus size: 62
4198 GCCGAGAGTT
4208 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
4270 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
4332 GGGTGCGG
1 GGGTGCGG
4340 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 4 0.06
62 65 0.94
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:4307 original size:156 final size:155
Alignment explanation
Indices: 4125--4410 Score: 427
Period size: 156 Copynumber: 1.8 Consensus size: 155
4115 AGACGGGTGT
* *
4125 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGC-GGAGTGC
* * *
4190 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTC-GTCACCATCGGCAACCCCCGACGGGT-GC
65 CGCACAGAACCGAGAGTT--GTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
4251 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
126 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
4281 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCC
* * *
4346 GCACAGAACCGAGCGTTGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGG
66 GCACAGAACCGAGAGTTGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGG
4411 TCACCATTGG
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
153 8 0.07
154 24 0.20
155 30 0.25
156 56 0.47
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (155 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCC
GCACAGAACCGAGAGTTGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGG
CAACCCCAGGCCACGGGTGCGGGGC
Found at i:4345 original size:32 final size:31
Alignment explanation
Indices: 4244--4345 Score: 93
Period size: 32 Copynumber: 3.3 Consensus size: 31
4234 CAACCCCCGA
4244 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * ****
4275 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
4305 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
4337 CGGAGTGCC
1 CGG-GTGCC
4346 GCACAGAACC
Statistics
Matches: 52, Mismatches: 12, Indels: 13
0.68 0.16 0.17
Matches are distributed among these distances:
30 16 0.31
31 15 0.29
32 21 0.40
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.10
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:4389 original size:92 final size:92
Alignment explanation
Indices: 4272--4644 Score: 311
Period size: 92 Copynumber: 4.0 Consensus size: 92
4262 CAGGCCACGG
4272 GTGCG-GGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
4336 GC-GGAGTGCCGCACAGAACCGAGCGTT
65 GCGGGAGTGCCGCACAGAACCGAGCGTT
* * * *** * * *
4363 GTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAAGC
1 GTGCGTG-GGCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCACGG
** * *
4427 CAGACGGGTGTGTCTCGGTCACCATCGGCAAACCCAGAC---
63 GTG-CGGGAGTG-C-C-G-CA-CA---G--AACCGAG-CGTT
*
4466 G-G-GT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA-CCCAGGCCACGGGTG
1 GTGCGTGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* *
4527 C-GGAGTGCCGCACAGAGCCGAGAGTT
66 CGGGAGTGCCGCACAGAACCGAGCGTT
* * **
4553 GGGTGCG-GGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 --GTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
4617 GTGCGGGAGTGCCGCACAGAACCGAGCG
63 GTGCGGGAGTGCCGCACAGAACCGAGCG
4645 CTGGGTGCGG
Statistics
Matches: 217, Mismatches: 36, Indels: 55
0.70 0.12 0.18
Matches are distributed among these distances:
85 5 0.02
87 1 0.00
89 1 0.00
90 3 0.01
91 9 0.04
92 68 0.31
93 32 0.15
94 24 0.11
95 10 0.05
96 2 0.01
97 9 0.04
98 9 0.04
99 30 0.14
100 2 0.01
101 2 0.01
102 1 0.00
103 2 0.01
105 6 0.03
106 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.13
Consensus pattern (92 bp):
GTGCGTGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:4449 original size:34 final size:34
Alignment explanation
Indices: 4373--4502 Score: 176
Period size: 33 Copynumber: 3.9 Consensus size: 34
4363 GTGCGTGAGG
* * *
4373 CTCGGTCACCATCGGCAATCCCAGGCGGGTG-GC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGTGT
* *
4406 CTCGGTCACCATTGGCAAAGCCAGACGGGTGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGTGT
4440 CTCGGTCACCATCGGCAAACCCAGAC-GG-GTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGTGT
* *
4472 CTCGGTCACCATCGGCAACCCCCGACGGGTG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTG
4503 CCTCGGCAAC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
32 28 0.33
33 31 0.36
34 26 0.31
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (34 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGTGT
Found at i:4477 original size:32 final size:32
Alignment explanation
Indices: 4373--4508 Score: 173
Period size: 32 Copynumber: 4.2 Consensus size: 32
4363 GTGCGTGAGG
* *
4373 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
4406 CTCGGTCACCATTGGCAAAGCCAGACGGGTGTGT
1 CTCGGTCACCATCGGCAAACCCAGAC-GG-GTGC
*
4440 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
4472 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
4504 CTCGG
1 CTCGG
4509 CAACCCAGGC
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
32 38 0.42
33 24 0.26
34 27 0.30
35 2 0.02
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18451 original size:33 final size:32
Alignment explanation
Indices: 18414--18502 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
18404 GCGTGAGCCC
*
18414 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
18447 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
18479 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
18503 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:18590 original size:32 final size:32
Alignment explanation
Indices: 18549--18681 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
18539 GTGCGTGAGG
* *
18549 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
18581 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18613 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
18645 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18677 CTCGG
1 CTCGG
18682 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:18826 original size:62 final size:63
Alignment explanation
Indices: 18728--18860 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
18718 GCCGAGAGTT
18728 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18791 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18853 -GGTGCGGG
1 GGGTGCGGG
18861 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 8 0.11
62 52 0.74
63 10 0.14
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:18840 original size:157 final size:156
Alignment explanation
Indices: 18645--18932 Score: 447
Period size: 157 Copynumber: 1.8 Consensus size: 156
18635 AGACGGGTGT
* *
18645 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTGC
* * *
18710 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
65 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
18772 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
127 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
18802 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGTGCGGGAGTGCC
* * *
18867 GCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
66 GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
18932 G
131 G
18933 TCACCATTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
155 33 0.28
156 35 0.29
157 52 0.43
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (156 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGC
Found at i:18969 original size:32 final size:32
Alignment explanation
Indices: 18895--19027 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
18885 GTGCGTGAGG
* *
18895 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
18928 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
18960 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
18992 CTCGGTCACCATCGGC-AACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
19023 CTCGG
1 CTCGG
19028 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
31 18 0.20
32 47 0.52
33 26 0.29
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18976 original size:65 final size:63
Alignment explanation
Indices: 18895--19027 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
18885 GTGCGTGAGG
* * * * *
18895 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATCGGC-AACCCAGACGGGTGC
* *
18960 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
19023 CTCGG
1 CTCGG
19028 CAACCCCAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 17 0.28
64 16 0.26
65 28 0.46
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (63 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
Found at i:19122 original size:346 final size:347
Alignment explanation
Indices: 18488--19145 Score: 1185
Period size: 346 Copynumber: 1.9 Consensus size: 347
18478 TCGGTCACCA
*
18488 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
18553 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
18618 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
18683 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
18748 CCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCA
261 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCA
18813 TCGGCAACCCCCGACGGGTGCC
326 TCGGCAACCCCCGACGGGTGCC
*
18835 TCGGCAACCCCAGGCCA-CGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
18899 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
18964 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
19028 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
19093 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
19146 AGTGCCGCAC
Statistics
Matches: 298, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
346 187 0.63
347 111 0.37
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (347 bp):
TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGGTGCC
Found at i:19183 original size:95 final size:94
Alignment explanation
Indices: 18791--19184 Score: 325
Period size: 95 Copynumber: 4.2 Consensus size: 94
18781 CCCAGGCCAC
*
18791 GGGTGCGG-GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-G
1 GGGTGCGGCAGCCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
18854 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
65 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * *
18883 TGGTGCGTG-AGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GCAGCCTCGGTCACCATCGGCAA-CCCCGACGGGT-GCCTCGG-CAACC-----CCA
* ** * *
18946 AGCCAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCAGA-C-
57 GGCC--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAGAGCT
*
18986 GGGT------GTCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGCAGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
19045 TGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 TGCGGGAGTGCCGCACAGAACCGAGAGCT
** * **
19074 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGCAGCCTCGGTCACCATCGGCAAC-CCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
19139 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
65 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
19169 GGGTGCGGCAGCCTCG
1 GGGTGCGGCAGCCTCG
19185 CACAGCGTCG
Statistics
Matches: 238, Mismatches: 34, Indels: 57
0.72 0.10 0.17
Matches are distributed among these distances:
86 6 0.03
87 2 0.01
88 16 0.07
89 3 0.01
90 5 0.02
92 6 0.03
93 29 0.12
94 31 0.13
95 82 0.34
96 9 0.04
97 19 0.08
99 5 0.02
101 5 0.02
102 9 0.04
103 5 0.02
104 6 0.03
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (94 bp):
GGGTGCGGCAGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:27416 original size:33 final size:32
Alignment explanation
Indices: 27379--27467 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
27369 GCGTGAGCCC
*
27379 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
27412 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
27444 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
27468 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:27555 original size:32 final size:32
Alignment explanation
Indices: 27514--27646 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
27504 GTGCGTGAGG
* *
27514 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
27546 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27578 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
27610 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27642 CTCGG
1 CTCGG
27647 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:27771 original size:31 final size:31
Alignment explanation
Indices: 27730--27827 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
27720 CAACCCCCGA
27730 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
27761 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
27792 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
27824 CGGG
1 CGGG
27828 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:27792 original size:63 final size:63
Alignment explanation
Indices: 27693--27827 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
27683 GCCGAGAGTT
*
27693 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27756 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27819 GGGTGCGGG
1 GGGTGCGGG
27828 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:27803 original size:95 final size:94
Alignment explanation
Indices: 27578--27804 Score: 244
Period size: 95 Copynumber: 2.4 Consensus size: 94
27568 AGACGGGTGT
* *
27578 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
27643 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
27672 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
27734 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
27767 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
27805 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 7 0.07
95 84 0.84
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:27804 original size:158 final size:158
Alignment explanation
Indices: 27610--27899 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 158
27600 AGACGGGTGT
* *
27610 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
27675 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
27737 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
27768 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
27833 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
27898 GG
131 GG
27900 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
157 33 0.27
158 86 0.71
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.37, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:27936 original size:32 final size:32
Alignment explanation
Indices: 27862--27995 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
27852 GTGCGTGAGG
* *
27862 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
27895 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
27927 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
27959 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
27991 CTCGG
1 CTCGG
27996 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:28078 original size:95 final size:95
Alignment explanation
Indices: 27756--28144 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
27746 CCCAGGCCAC
27756 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
27821 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
27850 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
27913 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
27948 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
28012 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
28042 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
28107 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
28137 GGGTGCGG
1 GGGTGCGG
28145 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:28091 original size:349 final size:348
Alignment explanation
Indices: 27453--28113 Score: 1196
Period size: 349 Copynumber: 1.9 Consensus size: 348
27443 TCGGTCACCA
**
27453 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
27518 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
27583 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
27648 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
27713 CCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
261 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
27778 ATCGGCAACCCCCGACGGGTGCC
326 ATCGGCAACCCCCGACGGGTGCC
*
27801 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
27866 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
27931 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
27996 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
28061 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
28114 AGTGCCGCAC
Statistics
Matches: 299, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
348 76 0.25
349 223 0.75
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (348 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACCCCCGACGGGTGCC
Found at i:36354 original size:33 final size:32
Alignment explanation
Indices: 36317--36405 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
36307 GCGTGAGCCC
*
36317 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
36350 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
36382 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
36406 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:36552 original size:30 final size:31
Alignment explanation
Indices: 36455--36578 Score: 157
Period size: 32 Copynumber: 4.0 Consensus size: 31
36445 CGTGAGGCTC
* *
36455 GTCACCATCGGCAACCCAGGCGGGTGGCCTCG
1 GTCACCATCGGCAACCCAGACGGGT-GTCTCG
36487 GTCACCATCGGCAAACCC--ACGGGTGTCTC-
1 GTCACCATCGGC-AACCCAGACGGGTGTCTCG
36516 GTCACCATCGGCAACCCAGAC-GGTGTCTCG
1 GTCACCATCGGCAACCCAGACGGGTGTCTCG
* *
36546 GTCACCATCGGCAACCCCCGACGGGTGGCTCG
1 GTCACCATCGGCAA-CCCAGACGGGTGTCTCG
36578 G
1 G
36579 CAACCCCAGG
Statistics
Matches: 82, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
28 5 0.06
29 20 0.24
30 20 0.24
31 11 0.13
32 21 0.26
33 5 0.06
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.15
Consensus pattern (31 bp):
GTCACCATCGGCAACCCAGACGGGTGTCTCG
Found at i:36570 original size:61 final size:61
Alignment explanation
Indices: 36450--36577 Score: 188
Period size: 61 Copynumber: 2.1 Consensus size: 61
36440 TGGTGCGTGA
*
36450 GGCTCGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCACGGGT
1 GGCTCGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCACGGGT
* * *
36511 GTCTCGTCACCATCGGCAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAA-ACCC-ACGGGT
36572 GGCTCG
1 GGCTCG
36578 GCAACCCCAG
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
59 19 0.32
60 6 0.10
61 35 0.58
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (61 bp):
GGCTCGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCACGGGT
Found at i:36718 original size:61 final size:61
Alignment explanation
Indices: 36623--36752 Score: 237
Period size: 61 Copynumber: 2.1 Consensus size: 61
36613 GCCGAGAGTT
36623 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
36684 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
36745 -GGTGCGGG
1 GGGTGCGGG
36753 TGCCGCACAG
Statistics
Matches: 68, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
60 12 0.18
61 56 0.82
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (61 bp):
GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
Found at i:36754 original size:29 final size:29
Alignment explanation
Indices: 36659--36756 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 29
36649 CAACCCCCGA
36659 CGGGTGCCTCGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGCAACCCCAGGCCAC-GGTG
* * ***
36689 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTC-G-CAACC-CCAGGCCA-CGGTG
36719 ACGGGTGCCTCGCAACCCCAGGCCACGGTG
1 -CGGGTGCCTCGCAACCCCAGGCCACGGTG
36749 CGGGTGCC
1 CGGGTGCC
36757 GCACAGAACC
Statistics
Matches: 50, Mismatches: 10, Indels: 17
0.65 0.13 0.22
Matches are distributed among these distances:
29 13 0.26
30 17 0.34
31 15 0.30
32 5 0.10
ACGTcount: A:0.13, C:0.42, G:0.35, T:0.10
Consensus pattern (29 bp):
CGGGTGCCTCGCAACCCCAGGCCACGGTG
Found at i:36876 original size:31 final size:32
Alignment explanation
Indices: 36785--36917 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
36775 GTGCGTGAGG
* *
36785 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAACCCCAGACGGGT-GC
* ** *
36818 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAACCCCAGACGGGTGC
*
36850 CTCGGTCACCATCGGCAA-CCCAGACGGGTGT
1 CTCGGTCACCATCGGCAACCCCAGACGGGTGC
* *
36881 CTCGGTCACCATCGTCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAACCCCAGACGGGTGC
36913 CTCGG
1 CTCGG
36918 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.17
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAACCCCAGACGGGTGC
Found at i:36909 original size:63 final size:65
Alignment explanation
Indices: 36785--36917 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
36775 GTGCGTGAGG
* * * *
36785 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * * *
36850 CTCGGTCACCATCGGCAA-CCCAGACGGGT-GTCTCGGTCACCATCGTCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
36913 CTCGG
1 CTCGG
36918 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 32 0.53
64 10 0.17
65 18 0.30
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.17
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:37049 original size:92 final size:92
Alignment explanation
Indices: 36885--37061 Score: 250
Period size: 92 Copynumber: 1.9 Consensus size: 92
36875 GGGTGTCTCG
* *
36885 GTCACCATCGTCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* *
36950 GAGCCGAGAGTTGGGTGCGGGGGCCTC
66 GAACCGAGAGCTGGGTGCGGGGGCCTC
* **
36977 GTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCA-TCCATTGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCG--
*
37040 CAGAACCGAGCGCTGGGTGCGG
64 CAGAACCGAGAGCTGGGTGCGG
37062 CACCTCGCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
90 18 0.24
91 18 0.24
92 39 0.52
ACGTcount: A:0.17, C:0.35, G:0.36, T:0.12
Consensus pattern (92 bp):
GTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
GAACCGAGAGCTGGGTGCGGGGGCCTC
Found at i:56180 original size:33 final size:32
Alignment explanation
Indices: 56143--56231 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
56133 GCGTGAGCCC
*
56143 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
56176 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
56208 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
56232 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:56319 original size:32 final size:32
Alignment explanation
Indices: 56278--56409 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
56268 GTGCGTGAGG
* *
56278 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
56310 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
56342 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
56374 CTCGGTCACCATCGGC-AACCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
56405 CTCGG
1 CTCGG
56410 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
31 18 0.19
32 65 0.68
33 12 0.13
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:56504 original size:32 final size:32
Alignment explanation
Indices: 56461--56567 Score: 91
Period size: 32 Copynumber: 3.4 Consensus size: 32
56451 GAGTTGGGTG
56461 CGGGGT-CCTCGGTCACCATCGGCAACCCCGA
1 CGGGGTGCCTCGGTCACCATCGGCAACCCCGA
* * ** *
56492 CGGGGTGCCTCGG-CAACC-CCAGGCCA-CGGGTG
1 CGGGGTGCCTCGGTC-ACCATC-GGCAACCCCG-A
56524 CGGGG-GCCTCGGTCACCATCGGCAACCCCCGA
1 CGGGGTGCCTCGGTCACCATCGGCAA-CCCCGA
56556 C-GGGTGCCTCGG
1 CGGGGTGCCTCGG
56568 CAACCCCAGG
Statistics
Matches: 57, Mismatches: 10, Indels: 17
0.68 0.12 0.20
Matches are distributed among these distances:
31 27 0.47
32 28 0.49
33 2 0.04
ACGTcount: A:0.13, C:0.40, G:0.36, T:0.11
Consensus pattern (32 bp):
CGGGGTGCCTCGGTCACCATCGGCAACCCCGA
Found at i:56561 original size:63 final size:63
Alignment explanation
Indices: 56456--56590 Score: 245
Period size: 63 Copynumber: 2.1 Consensus size: 63
56446 GCCGAGAGTT
*
56456 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCGACGGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCGACGGGGTGCCTCGGCAACCCCAGGCCAC
56519 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAA-CCCCGACGGGGTGCCTCGGCAACCCCAGGCCAC
56582 GGGTGCGGG
1 GGGTGCGGG
56591 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
63 63 0.90
64 7 0.10
ACGTcount: A:0.13, C:0.39, G:0.38, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCGACGGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:56566 original size:95 final size:93
Alignment explanation
Indices: 56342--56567 Score: 233
Period size: 95 Copynumber: 2.4 Consensus size: 93
56332 AGACGGGTGT
* *
56342 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGACGGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCT
56407 CGGCAACCCCAGGCCACGGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
56435 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCGACGGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCGAC-GGG
*
56497 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
61 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
56530 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
56568 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 34 0.34
95 49 0.49
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.36, G:0.35, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:56660 original size:158 final size:156
Alignment explanation
Indices: 56374--56662 Score: 440
Period size: 158 Copynumber: 1.8 Consensus size: 156
56364 AGACGGGTGT
* *
56374 CTCGGTCACCATCGGCAACCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
56439 GGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCGACGGGGTGCCTCG
66 GCACAGAACCGAGAGTTGGGTGCGGGG-CCTCGGTCACCATCGGCAACCCAGACGGGGTGCCTCG
56504 GCAACCCCAGGCCACGGGTGCGGGGGC
130 GCAACCCCAGGCCACGGGTGCGGGGGC
56531 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* *
56596 CGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGC-GGGTGGC
65 CGCACAGAACCGAGAGTTGGGTGCG-G-GGCCTCGGTCACCATCGGCAA-CCCAGACGGGGT-GC
56658 CTCGG
126 CTCGG
56663 TCACCATTGG
Statistics
Matches: 120, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
157 46 0.38
158 72 0.60
159 2 0.02
ACGTcount: A:0.16, C:0.35, G:0.37, T:0.12
Consensus pattern (156 bp):
CTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAACCCAGACGGGGTGCCTCGG
CAACCCCAGGCCACGGGTGCGGGGGC
Found at i:56699 original size:32 final size:32
Alignment explanation
Indices: 56625--56758 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
56615 GTGCGTGAGG
* *
56625 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
56658 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
56690 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
56722 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
56754 CTCGG
1 CTCGG
56759 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:56841 original size:95 final size:95
Alignment explanation
Indices: 56519--56907 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
56509 CCCAGGCCAC
56519 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
56584 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
56613 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
56676 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
56711 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
56775 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
56805 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
56870 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
56900 GGGTGCGG
1 GGGTGCGG
56908 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:65121 original size:31 final size:31
Alignment explanation
Indices: 65083--65170 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
65073 TGCGTGAGCC
*
65083 CCGGTCACCATCGGCAATCCCAGGCGGGTGG
1 CCGGTCACCATCGGCAAACCCAGGCGGGTGG
* ** *
65114 CCGGTCACCATCGGCAAAACCATACGGGTGT
1 CCGGTCACCATCGGCAAACCCAGGCGGGTGG
*
65145 CTCGGTCACCATCGGCAACCCCAGGC
1 C-CGGTCACCATCGGCAAACCCAGGC
65171 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 27 0.57
32 20 0.43
ACGTcount: A:0.20, C:0.38, G:0.28, T:0.14
Consensus pattern (31 bp):
CCGGTCACCATCGGCAAACCCAGGCGGGTGG
Found at i:65289 original size:32 final size:32
Alignment explanation
Indices: 65217--65329 Score: 185
Period size: 32 Copynumber: 3.6 Consensus size: 32
65207 GTGCGTGAGG
* *
65217 CTCGGTCACCATCGGC-AA-CCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
65248 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
65280 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
65312 CTCGGTCACCATCGGCAA
1 CTCGGTCACCATCGGCAA
65330 CCCGGTGGCT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
31 16 0.21
32 53 0.68
33 9 0.12
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:65463 original size:60 final size:62
Alignment explanation
Indices: 65388--65518 Score: 223
Period size: 60 Copynumber: 2.1 Consensus size: 62
65378 AGCGAGAGTT
*
65388 GGGTGCGGGGTCCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAACCCCAGG-C-C
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA-CCCAGGCCAC
65448 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCAGGCCAC
65510 GGGTGCGGG
1 GGGTGCGGG
65519 AGTGCCGCAC
Statistics
Matches: 67, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
60 35 0.52
61 22 0.33
62 10 0.15
ACGTcount: A:0.13, C:0.38, G:0.38, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCAGGCCAC
Found at i:65517 original size:153 final size:150
Alignment explanation
Indices: 65312--65590 Score: 372
Period size: 153 Copynumber: 1.8 Consensus size: 150
65302 AGACGGGTGT
* * *
65312 CTCGGTCACCATCGGCAACCCGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGACA
1 CTCGGTCACCATCGGCAACCCGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACA
* *
65377 G-AGCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAA-CCCCGACGGGT-GCCTCGGC
66 GAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGC
65437 AACCCCAGGCCGGGTGCGGGGGC
128 AACCCCAGGCCGGGTGCGGGGGC
65460 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA-CCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAA---CC--C-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* *
65524 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
60 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTC
65589 GG
125 GG
65591 TCACCATTGG
Statistics
Matches: 113, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
148 18 0.16
151 2 0.02
153 54 0.48
154 30 0.27
155 9 0.08
ACGTcount: A:0.15, C:0.35, G:0.37, T:0.13
Consensus pattern (150 bp):
CTCGGTCACCATCGGCAACCCGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACA
GAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGCAAC
CCCAGGCCGGGTGCGGGGGC
Found at i:65627 original size:32 final size:32
Alignment explanation
Indices: 65553--65685 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
65543 GTGCGTGAGG
* *
65553 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
65586 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
65618 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
65650 CTCGGTCACCATCGGC-AACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
65681 CTCGG
1 CTCGG
65686 CAACCCAGGC
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
31 18 0.20
32 47 0.52
33 26 0.29
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:65633 original size:65 final size:63
Alignment explanation
Indices: 65553--65685 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
65543 GTGCGTGAGG
* * * * *
65553 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATCGGC-AACCCAGACGGGTGC
* *
65618 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
65681 CTCGG
1 CTCGG
65686 CAACCCAGGC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 17 0.28
64 16 0.26
65 28 0.46
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (63 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
Done.