genome.fa.s9550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009550.1 Hibiscus syriacus cultivar Beakdansim tig00116461_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47276

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279--4662	95	4.1	94	71	9	352	13	36	33	17	1.88
4428--4560	32	4.2	32	88	2	187	15	30	35	18	1.92
4428--4560	65	2.1	63	87	2	185	15	30	35	18	1.92
4594--4725	63	2.1	62	91	6	216	10	37	37	13	1.80
4770--4898	32	4.2	31	90	6	183	14	31	35	17	1.91
4459--4870	153	2.7	155	79	11	484	13	35	33	17	1.89
4952--5031	32	2.5	32	87	4	108	16	28	33	21	1.95
13198--13585	95	4.1	94	72	7	372	12	36	33	17	1.88
13347--13479	32	4.2	32	88	2	187	15	30	35	18	1.92
13347--13479	65	2.1	63	87	2	185	15	30	35	18	1.92
13537--13641	32	3.3	32	68	13	101	11	34	40	13	1.80
13514--13648	63	2.1	63	98	0	261	10	37	39	13	1.79
13514--13611	31	3.1	31	66	13	92	9	37	39	13	1.76
13271--13637	190	1.9	191	85	6	512	12	34	35	17	1.87
13695--13826	32	4.2	32	92	3	205	14	31	36	18	1.90
13378--13797	158	2.7	159	80	8	532	13	34	34	17	1.89
13378--13961	158	3.6	156	75	11	459	13	34	34	17	1.90
13873--13961	33	2.8	32	82	1	115	14	28	37	20	1.92
22155--22541	95	4.1	94	72	8	363	12	36	33	17	1.88
22304--22437	32	4.2	32	88	1	187	15	30	35	17	1.92
22494--22596	31	3.4	31	68	16	97	11	34	39	13	1.81
22472--22603	62	2.1	62	97	1	248	10	37	37	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22400--22684	155	1.8	156	89	5	452	12	37	34	15	1.85
22649--22780	32	4.2	32	92	3	205	14	31	36	18	1.90
22186--22841	344	1.9	347	94	1	1167	13	35	33	17	1.89
22827--22915	33	2.8	32	82	1	115	14	28	37	20	1.92
31112--31499	95	4.1	94	72	8	372	12	36	33	17	1.88
31261--31394	32	4.2	32	88	1	187	15	30	35	17	1.92
31452--31555	31	3.3	32	68	15	92	11	34	40	13	1.81
31429--31562	62	2.1	63	97	1	252	10	37	38	13	1.79
31609--31740	32	4.2	32	92	3	205	14	31	36	18	1.90
31293--31711	157	2.7	158	80	8	528	13	34	34	17	1.89
31787--31875	33	2.8	32	82	1	115	14	28	37	20	1.92
40053--40440	95	4.1	94	72	8	372	12	36	33	17	1.88
40202--40335	32	4.2	32	88	1	187	15	30	35	17	1.92
40393--40496	31	3.3	32	68	15	92	11	34	40	13	1.81
40370--40503	62	2.1	63	97	1	252	10	37	38	13	1.79
40298--40584	156	1.8	157	88	5	447	12	36	35	15	1.85
40549--40680	32	4.2	32	92	3	205	14	31	36	18	1.90
40234--40651	157	2.7	158	80	8	519	13	34	34	17	1.89
40234--40815	157	3.6	155	75	11	446	13	34	33	18	1.90
40727--40815	33	2.8	32	82	1	115	14	28	37	20	1.92
40098--40741	346	1.9	343	95	1	1132	12	34	34	17	1.88

Tables:   1

The End!