Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009551.1 Hibiscus syriacus cultivar Beakdansim tig00116465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12584
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.23
Found at i:3330 original size:95 final size:95
Alignment explanation
Indices: 3138--3523 Score: 356
Period size: 95 Copynumber: 4.1 Consensus size: 95
3128 TGCGAGGCTG
* ** *
3138 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
3203 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
3233 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
3297 GTCGGGGGTTGCCGATGGTGACCGAGACACC
66 GTCGGGGGTTGCCGATGGTGACCGAGGC-CC
******* * ** ** * * *** * * ***
3328 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCTCTGGCTTTGCCAATGG-TGACCGAGGCC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCGCACCCGTGGCCTGGGGTTG-CCGAGG-C
* * *
3390 ACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
62 ACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
3424 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
3488 -TC-GGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
3516 CCGCACCC
1 CCGCACCC
3524 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 60, Indels: 26
0.72 0.20 0.09
Matches are distributed among these distances:
92 25 0.11
93 6 0.03
94 51 0.23
95 93 0.42
96 17 0.08
97 27 0.12
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:3372 original size:31 final size:32
Alignment explanation
Indices: 3286--3419 Score: 171
Period size: 33 Copynumber: 4.2 Consensus size: 32
3276 GCCTGGGTTG
* * *
3286 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
3318 CCGAGACACCCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACA-CCCGTCTGGGTTTGCCGATGGTGA
* *
3351 CCGAGACACCC-TCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
3382 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
3415 CCGAG
1 CCGAG
3420 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
31 22 0.25
32 17 0.19
33 50 0.56
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:3529 original size:61 final size:62
Alignment explanation
Indices: 3454--3585 Score: 248
Period size: 62 Copynumber: 2.1 Consensus size: 62
3444 GTGCGGCACT
*
3454 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC-TCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
3515 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
3577 CCCGCACCC
1 CCCGCACCC
3586 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 34 0.49
62 35 0.51
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:3573 original size:31 final size:31
Alignment explanation
Indices: 3477--3578 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 31
3467 CCTGGGGTTG
3477 CCGAGGCACCC-TCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
3507 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
3538 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
3569 CCGAGG-ACCC
1 CCGAGGCACCC
3579 CGCACCCAAC
Statistics
Matches: 53, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
30 18 0.34
31 31 0.58
32 4 0.08
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:3573 original size:92 final size:93
Alignment explanation
Indices: 3477--3704 Score: 214
Period size: 92 Copynumber: 2.4 Consensus size: 93
3467 CCTGGGGTTG
* **
3477 CCGAGGCACCC-TCGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCGTGGCCTGGGGTTGCCG
1 CCGAGGCACCCATCGGGCTTGCCGATGGTGACCGAGAACCCC-CACCCGTGGCCTGGGGTTGCCG
*
3541 AGGCACCCGTC-GGGGTTGCCGATGGTGA
65 AGCCACCCGTCGGGGGTTGCCGATGGTGA
* * *** * * * * *
3569 CCGAGGACCCCGCACCCAACTCT-CGGCT-CTGTCCG-GAACTCCCACCCGTGGCCTGGGGTTGC
1 CCGAGG-CACC-CATCGGGCT-TGCCGATGGTGACCGAGAACCCCCACCCGTGGCCTGGGGTTGC
3631 CGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 CGAGCCACCCGTCGGGGGTTGCCGATGGTGA
* * *
3662 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCC
1 CCGAGGCACCCATC-GGGCTTGCCGATGGTGACCGAGA-ACCC
3705 GTCTGGGTTT
Statistics
Matches: 99, Mismatches: 27, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
91 3 0.03
92 45 0.45
93 34 0.34
94 8 0.08
95 8 0.08
96 1 0.01
ACGTcount: A:0.13, C:0.36, G:0.35, T:0.16
Consensus pattern (93 bp):
CCGAGGCACCCATCGGGCTTGCCGATGGTGACCGAGAACCCCCACCCGTGGCCTGGGGTTGCCGA
GCCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:3672 original size:32 final size:32
Alignment explanation
Indices: 3630--3762 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
3620 CCTGGGGTTG
* *
3630 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
3662 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
3694 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
3726 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
3758 CCGAG
1 CCGAG
3763 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:3749 original size:64 final size:64
Alignment explanation
Indices: 3630--3896 Score: 215
Period size: 64 Copynumber: 4.0 Consensus size: 64
3620 CCTGGGGTTG
* * * * * *
3630 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGCCACCCGCCTGGGATTGCCGATGGTGA
3694 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA-GCCACCCGCCTGGGATTGCCGATGGTGA
* * * *** *
3758 CCGAGCCTCACGCACCAACG-CTCGG-TT-CTG-TGCG-GCACTCCCA-CCAATGGCCTGGGGTT
1 CCGAG----A--CACC--CGTCTGGGTTTGCCGATG-GTG-A--CCGAGCCACCCGCCTGGGATT
3817 GCCGATGGTGA
54 GCCGATGGTGA
* *
3828 CCGAGACACCCGTATGGTTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTG
1 CCGAGACACCCGTCTGG-GTTTGCCGATGGTGACCGA-GCCACCCGCCTGGGATTGCCGATGGTG
3893 A
64 A
3894 CCG
1 CCG
3897 GGGCTCACGC
Statistics
Matches: 161, Mismatches: 20, Indels: 42
0.72 0.09 0.19
Matches are distributed among these distances:
62 2 0.01
63 2 0.01
64 58 0.36
65 14 0.09
66 31 0.19
67 3 0.02
68 4 0.02
69 14 0.09
70 24 0.15
71 7 0.04
72 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (64 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:3857 original size:33 final size:33
Alignment explanation
Indices: 3810--3896 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
3800 ACCAATGGCC
* *
3810 TGGGGTTGCCGATGGTGACCGA-GACACCCGTA
1 TGGGATTGCCGATGGTGACCGAGGACACCCGCA
** * *
3842 TGGTTTTTGCCGATGGTGACCGAGGCCACCCGCC
1 TGG-GATTGCCGATGGTGACCGAGGACACCCGCA
3876 TGGGATTGCCGATGGTGACCG
1 TGGGATTGCCGATGGTGACCG
3897 GGGCTCACGC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
32 3 0.07
33 33 0.72
34 10 0.22
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (33 bp):
TGGGATTGCCGATGGTGACCGAGGACACCCGCA
Found at i:12179 original size:95 final size:95
Alignment explanation
Indices: 12024--12410 Score: 374
Period size: 95 Copynumber: 4.1 Consensus size: 95
12014 TGCGAGGCTG
* ** *
12024 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
12089 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
12119 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
12184 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
****** * ** ** * *** * * ***
12214 CCGTC-TGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
12275 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
12310 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
12373 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
12403 CCGCACCC
1 CCGCACCC
12411 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 32 0.14
94 27 0.12
95 118 0.53
96 44 0.20
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:12209 original size:32 final size:32
Alignment explanation
Indices: 12173--12305 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
12163 CCTGGGGTTG
* * *
12173 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
12205 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
12236 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
12268 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
12301 CCGAG
1 CCGAG
12306 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 30 0.34
32 32 0.36
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:12230 original size:31 final size:31
Alignment explanation
Indices: 12173--12305 Score: 167
Period size: 31 Copynumber: 4.2 Consensus size: 31
12163 CCTGGGGTTG
* * *
12173 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTC-TGGTTTGCCGATGGTGA
12205 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
*
12236 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGG-TTTGCCGATGGTGA
* * *
12268 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCT-GGTTTGCCGATGGTGA
12301 CCGAG
1 CCGAG
12306 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
31 32 0.36
32 31 0.34
33 25 0.28
34 2 0.02
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (31 bp):
CCGAGACACCCGTCTGGTTTGCCGATGGTGA
Found at i:12272 original size:63 final size:65
Alignment explanation
Indices: 12173--12305 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
12163 CCTGGGGTTG
* * * * *
12173 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCCGTCT-GGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
* * *
12236 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
12301 CCGAG
1 CCGAG
12306 CCTCACGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 31 0.52
64 9 0.15
65 20 0.33
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (65 bp):
CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:12398 original size:32 final size:32
Alignment explanation
Indices: 12362--12465 Score: 101
Period size: 31 Copynumber: 3.3 Consensus size: 32
12352 GCCTGGGTTG
12362 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** *
12394 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCCGAT-GG-TGA
12424 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
12456 CCGAGG-ACCC
1 CCGAGGCACCC
12466 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
29 1 0.02
30 13 0.24
31 20 0.37
32 19 0.35
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:12416 original size:62 final size:62
Alignment explanation
Indices: 12340--12472 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
12330 GTGCGGCACT
*
12340 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
12402 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
12464 CCCGCACCC
1 CCCGCACCC
12473 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:12551 original size:154 final size:156
Alignment explanation
Indices: 12268--12552 Score: 436
Period size: 155 Copynumber: 1.8 Consensus size: 156
12258 CCAATGGTGA
* *
12268 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTG
* * *
12333 CGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA
66 CCGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA
12398 GGCCCCCGCACCCGTGGCCTGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGTTG
* * *
12424 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
12486 GT-CCGAACTCCCGCACCCGT-GCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGAC
63 GTGCCGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGAC
12549 CGAG
128 CGAG
12553 ACACCCGTCT
Statistics
Matches: 118, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
154 46 0.39
155 47 0.40
156 23 0.19
157 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTG
CCGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:12552 original size:32 final size:32
Alignment explanation
Indices: 12516--12584 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
12506 GCCTGGGTTG
*
12516 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGA
* *
12548 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGA
12580 CCGAG
1 CCGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.17
Consensus pattern (32 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGA
Done.