genome.fa.s9555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009555.1 Hibiscus syriacus cultivar Beakdansim tig00116498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23306

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167--4252	31	2.8	31	78	5	102	20	38	25	15	1.92
4297--4428	32	4.2	32	91	3	196	18	37	30	14	1.90
4295--4428	63	2.1	64	87	4	200	17	36	31	14	1.90
4478--4605	62	2.0	63	95	4	233	14	40	35	10	1.79
4640--4751	31	3.6	32	85	6	149	19	34	28	16	1.94
4640--4769	31	4.2	32	83	5	142	17	36	28	16	1.92
4536--4905	94	3.9	94	70	18	304	17	35	34	13	1.89
4241--4886	342	1.9	342	91	3	1079	17	35	33	13	1.89
13005--13092	31	2.8	31	80	3	104	20	37	27	14	1.92
13137--13267	32	4.2	32	90	4	187	17	37	30	14	1.90
13314--13447	63	2.1	62	97	1	250	13	39	36	10	1.79
13199--13424	95	2.4	94	71	10	242	15	37	34	12	1.86
13378--13759	93	4.1	93	70	20	294	17	34	35	13	1.88
13231--13519	157	1.8	157	88	5	449	15	35	36	12	1.85
13482--13615	32	4.2	32	89	0	187	17	35	30	15	1.92
13165--13582	158	2.7	157	81	5	522	17	35	33	13	1.89
13583--13768	92	2.0	93	87	3	268	17	35	35	11	1.86
21897--21980	30	2.8	29	80	8	96	21	38	26	14	1.91
22030--22158	31	4.2	32	88	6	169	18	37	29	14	1.91
22028--22158	61	2.1	63	83	8	171	18	36	30	14	1.91
22203--22329	59	2.1	60	91	7	206	12	40	35	11	1.79
22123--22400	150	1.8	152	87	6	413	15	37	34	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22364--22494	32	4.2	31	87	2	172	18	36	29	16	1.92
22364--22494	63	2.1	63	85	2	174	18	36	29	16	1.92
22459--22642	94	2.0	94	88	4	273	16	34	35	12	1.87

Tables:   1

The End!