genome.fa.s956.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000956.1 Hibiscus syriacus cultivar Beakdansim tig00001912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67320

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3674--3881	95	2.2	95	84	0	263	34	15	23	26	1.95
4219--4904	59	11.8	59	89	3	1023	29	12	20	37	1.90
5315--5375	29	2.1	29	90	0	95	47	4	22	24	1.71
6718--6904	83	2.3	81	81	2	214	36	16	14	32	1.89
6775--7060	153	1.9	152	85	5	398	39	17	12	30	1.86
6919--7151	82	2.8	84	80	7	228	37	17	13	31	1.88
11550--11630	26	3.2	26	81	8	78	14	13	4	66	1.40
20375--20441	18	3.7	18	97	0	125	26	31	23	17	1.97
20427--20507	28	2.9	28	92	0	126	35	25	18	19	1.95
21912--21937	2	13.0	2	100	0	52	50	0	0	50	1.00
22166--22232	22	3.0	22	88	0	107	32	20	22	23	1.98
26633--26657	13	1.9	13	100	0	50	40	16	16	28	1.89
27385--27436	20	2.6	20	100	0	104	25	23	17	34	1.96
30019--30074	22	2.6	22	83	10	71	35	14	25	25	1.93
30648--30685	18	2.1	19	90	5	60	36	2	26	34	1.71
33938--33977	21	1.9	21	84	0	53	32	22	17	27	1.96
38524--38564	13	3.0	14	73	20	50	17	12	0	70	1.16
38514--38602	27	3.5	26	77	17	98	12	21	0	66	1.24
38539--38587	21	2.3	21	100	0	98	12	18	0	69	1.19
38515--38624	48	2.3	48	84	6	134	11	23	0	64	1.26
43772--43824	22	2.5	22	75	9	56	26	16	30	26	1.97
44634--44714	28	2.9	28	92	0	135	14	16	28	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45707--45751	20	2.2	20	100	0	90	35	13	0	51	1.41
54665--54694	3	10.0	3	100	0	60	33	0	0	66	0.92
64150--64722	132	4.3	132	80	6	549	33	21	15	30	1.94
65449--65487	20	2.0	20	85	5	53	28	5	15	51	1.64
65459--65495	18	2.0	20	89	10	60	27	0	16	56	1.40

Tables:   1

The End!