Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009560.1 Hibiscus syriacus cultivar Beakdansim tig00116581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73739
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Found at i:7393 original size:94 final size:92
Alignment explanation
Indices: 7261--7620 Score: 292
Period size: 94 Copynumber: 3.9 Consensus size: 92
7251 CGCTCGGTTC
* *
7261 TGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGAC
1 TGCGGCACTCCCGCACC-CTGGCCTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGAC
7326 CGAGGCCCCCGCACCCAACTCTCGCTCTG
64 CGAGGCCCCCGCACCCAACTCTCGCTCTG
7355 TGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGTTGCCGATGGTGACC
1 TGCGGCACTCCCGCACCC-TGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACC
* * * **** *
7419 GAGACACCCG--TCTGGGT-TTGC-CGATGG
65 GAGGCCCCCGCACCCAACTCTCGCTC--T-G
* ** * * *** * *
7446 TGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGCCACCCGCCTGGGATTGCCGAT
1 TG--CG-GCACTCCCG-C-ACCCTGGCCTGGGGTTG-CCGAGG-CACCCGTC-GGGGTTGCCGAT
* * *
7509 GGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTG
58 GGTGACCGAGGCC-CCCGCACCCAACTCTC-GCTCTG
7544 TGCGGCACTCCCGCA-CC-GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
1 TGCGGCACTCCCGCACCCTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
7607 AGGCCCCCGCACCC
66 AGGCCCCCGCACCC
7621 GTGGCCTGGG
Statistics
Matches: 203, Mismatches: 40, Indels: 49
0.70 0.14 0.17
Matches are distributed among these distances:
88 1 0.00
89 3 0.01
90 28 0.14
91 15 0.07
92 35 0.17
93 15 0.07
94 57 0.28
95 10 0.05
96 9 0.04
97 22 0.11
98 4 0.02
99 2 0.01
100 1 0.00
101 1 0.00
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (92 bp):
TGCGGCACTCCCGCACCCTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCAACTCTCGCTCTG
Found at i:7445 original size:32 final size:32
Alignment explanation
Indices: 7387--7518 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
7377 CCTGGGGTTG
*
7387 CCGAGGCACCCGTC-GGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
7417 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
7449 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
7481 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
7514 CCGAG
1 CCGAG
7519 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
30 13 0.14
31 3 0.03
32 48 0.53
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:7506 original size:65 final size:62
Alignment explanation
Indices: 7387--7518 Score: 183
Period size: 65 Copynumber: 2.1 Consensus size: 62
7377 CCTGGGGTTG
* * * *
7387 CCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
7449 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GG-GTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
7514 CCGAG
1 CCGAG
7519 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
62 13 0.21
63 2 0.03
64 16 0.26
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (62 bp):
CCGAGACACCCGTCGGGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:7608 original size:31 final size:31
Alignment explanation
Indices: 7573--7675 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
7563 CCTGGGGTTG
7573 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
7604 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
7635 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
7666 CCGAGG-ACCC
1 CCGAGGCACCC
7676 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:7635 original size:62 final size:62
Alignment explanation
Indices: 7561--7682 Score: 235
Period size: 62 Copynumber: 2.0 Consensus size: 62
7551 CTCCCGCACC
*
7561 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCGT
1 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCGT
7623 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCCGCACCC
1 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCCGCACCC
7683 AACTCTCGGC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.11, C:0.35, G:0.40, T:0.14
Consensus pattern (62 bp):
GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCGT
Found at i:7707 original size:153 final size:155
Alignment explanation
Indices: 7481--7762 Score: 423
Period size: 153 Copynumber: 1.8 Consensus size: 155
7471 CCAATGGTGA
* *
7481 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
7546 CGGCACTCCCGCA-CCGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAG
66 CGGAACTCCCGCACCCGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAG
7609 GCCCCCGCACCCGTGGCCTGGGGTTG
130 GCCCCCGCACCCGTGGCCTGGGGTTG
* * *
7635 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
7696 GTCCGGAACTCCCGCACCCGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
63 GTCCGGAACTCCCGCACCCGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
7761 AG
128 AG
7763 ACACCCGTCT
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
152 24 0.21
153 55 0.47
154 37 0.32
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.15
Consensus pattern (155 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
CCCCCGCACCCGTGGCCTGGGGTTG
Found at i:7735 original size:22 final size:22
Alignment explanation
Indices: 7710--7751 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7700 GGAACTCCCG
*
7710 CACCCGGCCTGGGTTGCCGAGC
1 CACCCGGCCGGGGTTGCCGAGC
* *
7732 CACCCGTCGGGGGTTGCCGA
1 CACCCGGCCGGGGTTGCCGA
7752 TGGTGACCGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.10, C:0.38, G:0.38, T:0.14
Consensus pattern (22 bp):
CACCCGGCCGGGGTTGCCGAGC
Found at i:7762 original size:32 final size:32
Alignment explanation
Indices: 7726--7860 Score: 200
Period size: 32 Copynumber: 4.2 Consensus size: 32
7716 GCCTGGGTTG
*
7726 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGA
* *
7758 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGA
* *
7790 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGA
*
7822 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GCCACCCGTCTGGGGTTGCCGATGGTGA
7854 CCGAGCC
1 CCGAGCC
7861 TCACGCACCA
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 3 0.03
32 84 0.88
33 9 0.09
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGCCACCCGTCTGGGGTTGCCGATGGTGA
Found at i:7982 original size:33 final size:32
Alignment explanation
Indices: 7905--7993 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
7895 CTCACCAATG
*
7905 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
7937 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
7970 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
7994 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:20816 original size:32 final size:32
Alignment explanation
Indices: 20780--20913 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
20770 CCTGGGGTTG
* * *
20780 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
20812 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
20844 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
20876 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
20909 CCGAG
1 CCGAG
20914 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:21003 original size:30 final size:30
Alignment explanation
Indices: 20969--21069 Score: 84
Period size: 30 Copynumber: 3.4 Consensus size: 30
20959 CCTGGGGTTG
20969 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
* * ** * *
20999 CCGAGGCCCCCGCACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCG-TCGGGTTGCC-GATGG-TGA
21030 CCGA-GCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTC-GGGTTGCCGATGGTGA
21060 CCGAGG-ACCC
1 CCGAGGCACCC
21070 CGCACCCAAC
Statistics
Matches: 52, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
29 4 0.08
30 32 0.62
31 13 0.25
32 3 0.06
ACGTcount: A:0.12, C:0.36, G:0.39, T:0.14
Consensus pattern (30 bp):
CCGAGGCACCCGTCGGGTTGCCGATGGTGA
Found at i:21030 original size:61 final size:59
Alignment explanation
Indices: 20948--21076 Score: 215
Period size: 61 Copynumber: 2.2 Consensus size: 59
20938 GTGCGGCACT
*
20948 CCCGCACCCGTCCTGGGGTTGCCGAGGCACCCGTC-GGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTCCTGGGGTTGCCGA-GCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
21007 CCCGCACCCGTGGCCTGGGGTTGCCGAGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGT--CCTGGGGTTGCCGAGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
21068 CCCGCACCC
1 CCCGCACCC
21077 AACTCTCGGC
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
59 11 0.17
60 9 0.14
61 46 0.70
ACGTcount: A:0.11, C:0.39, G:0.36, T:0.14
Consensus pattern (59 bp):
CCCGCACCCGTCCTGGGGTTGCCGAGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:21179 original size:32 final size:32
Alignment explanation
Indices: 21138--21251 Score: 194
Period size: 32 Copynumber: 3.6 Consensus size: 32
21128 CCACCCGGGG
21138 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
21170 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
* *
21202 TTGCCGATGGTGACCGAGGCCACCCGCCTGGG-
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
21234 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
21252 CCTCACGCAC
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
31 1 0.01
32 66 0.84
33 12 0.15
ACGTcount: A:0.15, C:0.29, G:0.36, T:0.20
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGT
Found at i:21238 original size:64 final size:65
Alignment explanation
Indices: 21138--21385 Score: 197
Period size: 64 Copynumber: 3.8 Consensus size: 65
21128 CCACCCGGGG
* * *
21138 TTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCTGGGT
21202 TTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAAC
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAG----A--CACC--C
*
21266 G-CTCGG-
58 GTCTGGGT
* **** *** * *
21272 TT-CTG-TGCG-GCACTCCCTCACCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCC-TAT
1 TTGCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCT
*
21333 GGTT
62 GGGT
21337 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
21386 GGGCTCACGC
Statistics
Matches: 142, Mismatches: 23, Indels: 38
0.70 0.11 0.19
Matches are distributed among these distances:
64 66 0.46
65 14 0.10
66 8 0.06
67 3 0.02
68 5 0.04
69 4 0.03
70 6 0.04
71 16 0.11
72 20 0.14
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.20
Consensus pattern (65 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCTGGGT
Found at i:21379 original size:33 final size:32
Alignment explanation
Indices: 21298--21385 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 32
21288 CTCACCAATG
*
21298 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
21330 -TATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
21362 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
21386 GGGCTCACGC
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
31 20 0.44
32 6 0.13
33 19 0.42
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:29665 original size:94 final size:94
Alignment explanation
Indices: 29512--29895 Score: 350
Period size: 94 Copynumber: 4.1 Consensus size: 94
29502 TGCGAGGCTG
* ** *
29512 CCGCACCCAGCGCTCGGTTCTGT-CGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
29576 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
29606 CCGCACCCAACTCTCGGCTCTGTGC-GCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
29670 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
29699 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
29761 CACCCGCCTGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGTTGCCGATGGTGACCGAGGCC-C
* *
29795 ACGCA-CCAACGCTCGTTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
29859 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
29888 CCGCACCC
1 CCGCACCC
29896 GTGGCCTGGG
Statistics
Matches: 216, Mismatches: 61, Indels: 26
0.71 0.20 0.09
Matches are distributed among these distances:
93 60 0.28
94 94 0.44
95 33 0.15
96 29 0.13
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:29718 original size:32 final size:32
Alignment explanation
Indices: 29659--29790 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
29649 CCTGGGGTTG
* *
29659 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
29690 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
29722 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
29754 CCGAGGCCACCCGCCT-GGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
29786 CCGAG
1 CCGAG
29791 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
31 14 0.16
32 67 0.74
33 9 0.10
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:29883 original size:31 final size:32
Alignment explanation
Indices: 29848--29952 Score: 85
Period size: 31 Copynumber: 3.3 Consensus size: 32
29838 CCTGGGGTTG
29848 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
29879 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
29910 CCGAGGCACCCGTCGGGGGTTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGG-TTGCCGATGGTGA
29943 CCGAGG-ACCC
1 CCGAGGCACCC
29953 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 13
0.68 0.16 0.16
Matches are distributed among these distances:
30 1 0.02
31 29 0.54
32 12 0.22
33 12 0.22
ACGTcount: A:0.11, C:0.34, G:0.40, T:0.14
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:29901 original size:62 final size:64
Alignment explanation
Indices: 29825--29959 Score: 247
Period size: 62 Copynumber: 2.1 Consensus size: 64
29815 GTGCGGCACT
*
29825 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGG-TTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGGAC
29887 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGGAC
29951 CCCGCACCC
1 CCCGCACCC
29960 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 37 0.53
63 4 0.06
64 29 0.41
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.14
Consensus pattern (64 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGGAC
Found at i:29942 original size:189 final size:189
Alignment explanation
Indices: 29584--29948 Score: 499
Period size: 189 Copynumber: 1.9 Consensus size: 189
29574 CCGTCGGGTG
* *
29584 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGCACTCCCGCACCCGTGG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGCACTCCCGCACCCGTGG
*** *
29649 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
66 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* *
29714 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGA
131 GAGGGTGACCGAGACACCCGTCGGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGA
**
29773 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGTTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGC-GCACTCCCGCACCCGT
* *
29836 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TG
64 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTTG
* * *
29899 GCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGG
128 GCC-GAGGG-TGACCGAGACACCCGTC-GGGCTTTGCCAATGGTGACCGAGG
29949 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
188 39 0.25
189 116 0.75
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (189 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGCACTCCCGCACCCGTGG
CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGA
Found at i:30047 original size:32 final size:32
Alignment explanation
Indices: 30005--30137 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
29995 GCCTGGGTTG
* *
30005 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
30037 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
30069 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
30101 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
30133 CCGAG
1 CCGAG
30138 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:30088 original size:158 final size:158
Alignment explanation
Indices: 29690--30108 Score: 496
Period size: 158 Copynumber: 2.7 Consensus size: 158
29680 CCGATGGTGA
* * *
29690 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * ** *
29755 CGAGGCCACCCGCCT-GGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGTTTCTGTG
65 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
29818 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
29848 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * *
29910 -CCGAGGCACCCGTCGGGGGTTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 ACCGAGACACCCGTC-TGGGTTTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
29972 TGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
125 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
30005 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
30070 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
65 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
30109 ACCCGCCTGG
Statistics
Matches: 218, Mismatches: 30, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
155 8 0.04
156 11 0.05
157 72 0.33
158 105 0.48
159 22 0.10
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:30259 original size:33 final size:32
Alignment explanation
Indices: 30183--30270 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 32
30173 CTCACCAATG
*
30183 GCCTGGGGTTGCCGAT-GTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
30214 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
30247 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
30271 GGGCTCACGC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 12 0.26
32 8 0.17
33 26 0.57
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:38656 original size:32 final size:32
Alignment explanation
Indices: 38597--38729 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
38587 GCCTGGGTTG
* *
38597 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
38628 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
38660 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
38692 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
38725 CCGAG
1 CCGAG
38730 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:38717 original size:65 final size:63
Alignment explanation
Indices: 38597--38729 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
38587 GCCTGGGTTG
* * * * *
38597 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
38660 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
38725 CCGAG
1 CCGAG
38730 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:38822 original size:31 final size:32
Alignment explanation
Indices: 38787--38890 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
38777 CCTGGGGTTG
38787 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
38818 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
38849 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
38881 CCGAGG-ACCC
1 CCGAGGCACCC
38891 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:38840 original size:62 final size:63
Alignment explanation
Indices: 38764--38897 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
38754 GTGCGGCACT
*
38764 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
38826 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
38889 CCCGCACCC
1 CCCGCACCC
38898 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:38880 original size:189 final size:190
Alignment explanation
Indices: 38522--38886 Score: 508
Period size: 189 Copynumber: 1.9 Consensus size: 190
38512 CCGTCGGGTG
* *
38522 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
38587 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
66 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* * *
38652 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
38712 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
38775 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TG
65 GGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTTG
* * *
38838 GCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
128 GCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
38887 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
189 82 0.53
190 73 0.47
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:39003 original size:32 final size:31
Alignment explanation
Indices: 38944--39073 Score: 190
Period size: 31 Copynumber: 4.2 Consensus size: 31
38934 CCTGGGGTTG
* * *
38944 CCGAGCCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
38975 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
39007 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
* *
39038 CCGAGGCCACCCGCCTGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGTTTGCCGATGGTGA
39069 CCGAG
1 CCGAG
39074 CCTCACGCAC
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
30 1 0.01
31 50 0.54
32 41 0.45
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (31 bp):
CCGAGACACCCGTCTGGTTTGCCGATGGTGA
Found at i:39029 original size:157 final size:157
Alignment explanation
Indices: 38628--39045 Score: 508
Period size: 157 Copynumber: 2.6 Consensus size: 157
38618 CCGATGGTGA
* * *
38628 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
38693 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCT-GGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
38757 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
38787 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
38849 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 ACCGAGACACCCGTC-TGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
38911 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
38944 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
39009 GAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCC
66 GAGACACCCGTCTGGATTGCCGATGGTGACCGAGGCC
39046 ACCCGCCTGG
Statistics
Matches: 218, Mismatches: 30, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
156 33 0.15
157 122 0.56
158 50 0.23
159 13 0.06
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:39197 original size:33 final size:32
Alignment explanation
Indices: 39120--39208 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
39110 CTCACCAATG
*
39120 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
39152 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
39185 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
39209 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:47548 original size:94 final size:95
Alignment explanation
Indices: 47379--47765 Score: 365
Period size: 94 Copynumber: 4.1 Consensus size: 95
47369 TGCGAGGCTG
* ** *
47379 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
47443 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
47473 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
47538 GTC-GGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
47567 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
47629 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
47664 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
47728 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
47758 CCGCACCC
1 CCGCACCC
47766 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 61, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
94 113 0.52
95 59 0.27
96 24 0.11
97 23 0.11
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:47586 original size:32 final size:32
Alignment explanation
Indices: 47527--47659 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
47517 CCTGGGGTTG
* *
47527 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
47558 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
47590 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
47622 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
47655 CCGAG
1 CCGAG
47660 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:47647 original size:65 final size:63
Alignment explanation
Indices: 47527--47659 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
47517 CCTGGGGTTG
* * * * *
47527 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
47590 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
47655 CCGAG
1 CCGAG
47660 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:47772 original size:63 final size:62
Alignment explanation
Indices: 47694--47827 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
47684 GTGCGGCACT
*
47694 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
47757 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
47819 CCCGCACCC
1 CCCGCACCC
47828 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 33 0.47
63 37 0.53
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:47786 original size:31 final size:31
Alignment explanation
Indices: 47694--47791 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
47684 GTGCGGCACT
47694 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
47725 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
47757 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
47788 CCCG
1 CCCG
47792 TCGGGGTTGC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:47792 original size:190 final size:190
Alignment explanation
Indices: 47451--47816 Score: 510
Period size: 190 Copynumber: 1.9 Consensus size: 190
47441 CCGTCGGGTG
* *
47451 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
47516 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
* *
47581 CGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CGAGGGTGACCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
47642 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
47705 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
47768 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGG
128 GGCC-GAGGG-TGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGG
47817 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
189 20 0.13
190 83 0.53
191 53 0.34
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
CGAGGGTGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:47815 original size:31 final size:32
Alignment explanation
Indices: 47717--47820 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
47707 CCTGGGGTTG
*
47717 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
47749 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
47780 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
47811 CCGAGG-ACCC
1 CCGAGGCACCC
47821 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:47815 original size:94 final size:95
Alignment explanation
Indices: 47717--47947 Score: 247
Period size: 94 Copynumber: 2.4 Consensus size: 95
47707 CCTGGGGTTG
* * *
47717 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG-GCCCCCGCACCCGTGGCCTGGGGTTGC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
*
47781 CGAGGCACCCGTCGGGGTTGCCGATGGTGA
66 CGAGCCACCCGTCGGGGTTGCCGATGGTGA
* *** * * * * *
47811 CCGAGG-ACCCCGCACCCAACTCT-CGGCT-CTGTCCG-GAACTCCCGCACCCGTGGCCTGGGGT
1 CCGAGGCA-CCCG-TCCGGGCT-TGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGT
47872 TGCCGAGCCACCCGTCGGGGTTGCCGATGGTGA
63 TGCCGAGCCACCCGTCGGGGTTGCCGATGGTGA
* * *
47905 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGA-ACCC
47948 GTCTGGTTTG
Statistics
Matches: 103, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 83 0.81
95 8 0.08
96 4 0.04
ACGTcount: A:0.13, C:0.36, G:0.35, T:0.16
Consensus pattern (95 bp):
CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
CGAGCCACCCGTCGGGGTTGCCGATGGTGA
Found at i:47933 original size:32 final size:32
Alignment explanation
Indices: 47874--48004 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
47864 CCTGGGGTTG
* *
47874 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
47905 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
47937 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
47968 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
48000 CCGAG
1 CCGAG
48005 CCTCACGCAC
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
31 34 0.37
32 57 0.61
33 2 0.02
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:47937 original size:188 final size:188
Alignment explanation
Indices: 47717--48065 Score: 431
Period size: 188 Copynumber: 1.9 Consensus size: 188
47707 CCTGGGGTTG
* * *
47717 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCG-ACCCGTTGGCC-GAGGG-TG
* *
47780 -CCGAGG-CACCCGTCGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 ACCGAGGCCACCCGCCGGGGTTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
**
47841 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGA
125 GTCCGGAACTCCCGCACCAATGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGA
* * * ** * *
47905 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCGAGGGTGACC
* * *
47970 GAGGCCACCCGCCTGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGCGG
66 GAGGCCACCCGCCGGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTCCGG
* *
48035 CACTCCCTCACCAATGGCCTGGGGTTGCCGA
131 AACTCCCGCACCAATGGCCTGGGGTTGCCGA
48066 TGGTGACCGA
Statistics
Matches: 136, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
187 7 0.05
188 98 0.72
189 31 0.23
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (188 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCGAGGGTGACC
GAGGCCACCCGCCGGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCAATGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGA
Found at i:47941 original size:157 final size:158
Alignment explanation
Indices: 47558--47975 Score: 519
Period size: 157 Copynumber: 2.7 Consensus size: 158
47548 CCGATGGTGA
* * * *
47558 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
47623 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGAGG-CACCCGTC-GGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
47687 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
47717 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* *
47779 G-CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 GACCGAGGCACCCGTCGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
47841 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
47874 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
47938 CGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCC
66 CGAGGCACCCGTCGGGATTGCCGATGGTGACCGAGGCC
47976 ACCCGCCTGG
Statistics
Matches: 220, Mismatches: 29, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
156 57 0.26
157 107 0.49
158 15 0.07
159 41 0.19
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCACCCGTCGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:47991 original size:63 final size:64
Alignment explanation
Indices: 47874--48139 Score: 213
Period size: 63 Copynumber: 4.0 Consensus size: 64
47864 CCTGGGGTTG
* * * * * *
47874 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
47937 CCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
* **** *** *
48000 CCGAGCCTCACGCACCAACG-CTCGG-TT-CTG-TGCG-GCACTCCCTCACCAATGGCCTGGGGT
1 CCGAG----A--CACC--CGTCT-GGTTTGCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGAT
48060 TGCCGATGGTGA
53 TGCCGATGGTGA
*
48072 CCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGG-TTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
48137 CCG
1 CCG
48140 GGCTCACGCA
Statistics
Matches: 159, Mismatches: 23, Indels: 40
0.72 0.10 0.18
Matches are distributed among these distances:
63 50 0.31
64 16 0.10
65 29 0.18
66 6 0.04
67 5 0.03
68 7 0.04
69 8 0.05
70 4 0.03
71 16 0.10
72 18 0.11
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (64 bp):
CCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:48014 original size:157 final size:156
Alignment explanation
Indices: 47558--48139 Score: 450
Period size: 157 Copynumber: 3.6 Consensus size: 156
47548 CCGATGGTGA
* * * *
47558 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
47623 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
47687 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCTGGGGTTG
* * * * *** * *
47717 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * *
47779 G-CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
47840 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGGTTG
47874 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
47938 CGA-GACACCCGTCT-GGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * *
48001 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGGCACTC
128 CG-GCCTCCCGCACC--CG-T-GG-CCTG-G-GG--TTG
* *** * * *
48040 CCTCA-CCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATGGTGA
1 CC-GAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
48104 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
65 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
48140 GGCTCACGCA
Statistics
Matches: 336, Mismatches: 55, Indels: 54
0.76 0.12 0.12
Matches are distributed among these distances:
155 6 0.02
156 68 0.20
157 109 0.32
158 14 0.04
159 43 0.13
160 1 0.00
161 2 0.01
162 3 0.01
163 1 0.00
164 2 0.01
166 8 0.02
167 52 0.15
168 9 0.03
169 18 0.05
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (156 bp):
CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGGTTG
Found at i:48122 original size:347 final size:343
Alignment explanation
Indices: 47426--48065 Score: 1133
Period size: 347 Copynumber: 1.9 Consensus size: 343
47416 CCAATGGACT
*
47426 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
47491 TCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGT
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
47556 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
131 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
47621 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
196 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
** *
47686 GCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
261 GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTAGGGGGTTGCCGATGGTGACC
47751 GAGGCCCCCGCACCCGTGGCCTG
326 GAGG---CCGCACCC--GGCCTG
47774 GGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
47838 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
*
47903 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGG-TTTGCCGATGGTG
131 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
47967 ACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
196 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
*
48031 GCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
261 GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
48066 TGGTGACCGA
Statistics
Matches: 284, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
345 76 0.27
346 32 0.11
347 153 0.54
348 23 0.08
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (343 bp):
GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTAGGGGGTTGCCGATGGTGACC
GAGGCCGCACCCGGCCTG
Found at i:48128 original size:33 final size:32
Alignment explanation
Indices: 48051--48139 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
48041 CTCACCAATG
*
48051 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
48083 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
48116 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
48140 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:56477 original size:32 final size:32
Alignment explanation
Indices: 56441--56574 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
56431 GCCTGGGTTG
* * *
56441 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
56473 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
56505 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
56537 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
56570 CCGAG
1 CCGAG
56575 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:56667 original size:31 final size:32
Alignment explanation
Indices: 56632--56735 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
56622 CCTGGGGTTG
56632 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
56663 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
56694 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
56726 CCGAGG-ACCC
1 CCGAGGCACCC
56736 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:56685 original size:62 final size:63
Alignment explanation
Indices: 56609--56742 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
56599 GTGCGGCACT
*
56609 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
56671 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
56734 CCCGCACCC
1 CCCGCACCC
56743 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:56730 original size:156 final size:158
Alignment explanation
Indices: 56537--56824 Score: 442
Period size: 156 Copynumber: 1.8 Consensus size: 158
56527 CCAATGGTGA
* *
56537 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGTTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGGACC-C-CGCACCCAACGCTCGGCTCT
* * *
56599 GTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
64 GT-CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
56663 CCGAGGCCCCCGCACCCGTGGCCTGGGGTTG
128 CCGAGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
56694 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGGCTCTGT
56758 CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
56823 AG
131 AG
56825 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
156 72 0.61
157 45 0.38
158 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGGCTCTGT
CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:56830 original size:32 final size:32
Alignment explanation
Indices: 56788--56920 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
56778 CCTGGGGTTG
* *
56788 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
56820 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
56852 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
56884 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
56916 CCGAG
1 CCGAG
56921 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:57044 original size:33 final size:32
Alignment explanation
Indices: 56967--57055 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
56957 CTCACCAATG
*
56967 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
56999 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
57032 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
57056 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:57085 original size:136 final size:137
Alignment explanation
Indices: 56833--57105 Score: 374
Period size: 136 Copynumber: 2.0 Consensus size: 137
56823 AGACACCCGT
* *
56833 CTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGC
1 CTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGGTTTGCCGATGGTGACCGAGGCCACCCGC
* * * *
56898 CTGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGCGGCACTCCCTCACC
66 CTGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGATCGGTGCGACACTCCCCCACC
56963 -AATGGC
131 AAATGGC
*
56969 CTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGC
1 CTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGGTTTGCCGATGGTGACCGAGGCCACCCGC
* *** * *
57034 CTGGGATTGCCGATGGTGACCG-GGCTCACGCACACTGGGGC-CTGAT-GGTGCGACTCTCCCCC
66 CTGGG-TTGCCGATGGTGACCGAGCCTCACGCAC-C-AACGCTCGGATCGGTGCGACACTCCCCC
57096 ACCAAATGGC
128 ACCAAATGGC
57106 GTGGTTACTG
Statistics
Matches: 120, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
136 92 0.77
137 26 0.22
138 2 0.02
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (137 bp):
CTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGGTTTGCCGATGGTGACCGAGGCCACCCGC
CTGGGTTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGATCGGTGCGACACTCCCCCACC
AAATGGC
Found at i:65355 original size:95 final size:94
Alignment explanation
Indices: 65200--65384 Score: 307
Period size: 95 Copynumber: 2.0 Consensus size: 94
65190 TGCGAGGCTG
* *
65200 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
65265 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* ** *
65295 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
65360 GTCGGGGTTGCCGATGGTGACCGAG
66 GTCGGGGTTGCCGATGGTGACCGAG
65385 ACACCCGTCT
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
94 19 0.23
95 65 0.77
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:65408 original size:32 final size:32
Alignment explanation
Indices: 65349--65480 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
65339 CCTGGGGTTG
* *
65349 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
65380 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
65412 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
65444 CCGAGGCCACCC-CCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
65476 CCGAG
1 CCGAG
65481 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
31 14 0.16
32 70 0.78
33 6 0.07
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:65570 original size:32 final size:32
Alignment explanation
Indices: 65534--65637 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
65524 GCCTGGGTTG
65534 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* *** * *
65566 CCGAGGCCCCCG-C-ACCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
65596 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
65628 CCGAGG-ACCC
1 CCGAGGCACCC
65638 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 18 0.33
31 12 0.22
32 24 0.44
ACGTcount: A:0.12, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:65594 original size:62 final size:61
Alignment explanation
Indices: 65512--65643 Score: 237
Period size: 62 Copynumber: 2.1 Consensus size: 61
65502 GTGCGGCACT
*
65512 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCA-CCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
65574 CCCGCACCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
65636 CCCGCACC
1 CCCGCACC
65644 CAACTCTCGG
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 9 0.13
62 59 0.87
ACGTcount: A:0.11, C:0.36, G:0.39, T:0.14
Consensus pattern (61 bp):
CCCGCACCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:65750 original size:32 final size:32
Alignment explanation
Indices: 65691--65822 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
65681 CCTGGGGTTG
* *
65691 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
65722 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
65754 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
65786 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
65818 CCGAG
1 CCGAG
65823 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:65946 original size:33 final size:32
Alignment explanation
Indices: 65869--65957 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
65859 CTCACCAATG
*
65869 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
65901 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
65934 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
65958 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.