genome.fa.s9561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009561.1 Hibiscus syriacus cultivar Beakdansim tig00116599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25541

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915--2300	95	4.1	94	72	9	356	12	36	33	17	1.88
2064--2195	31	4.2	32	86	4	178	15	31	34	18	1.92
2253--2357	31	3.4	31	65	13	81	11	34	40	14	1.82
2230--2364	62	2.1	64	95	2	247	10	37	38	14	1.80
1988--2353	189	1.9	191	85	6	503	12	34	35	17	1.88
2411--2543	32	4.2	32	91	2	196	14	30	36	18	1.90
2411--2676	64	4.0	64	70	18	204	15	32	33	19	1.92
2588--2676	33	2.8	32	82	1	115	14	28	37	20	1.92
6706--6781	39	2.0	38	97	2	143	13	21	25	40	1.89
10822--11006	94	2.0	95	91	1	300	11	36	34	16	1.86
10970--11103	32	4.2	32	88	1	187	15	30	35	17	1.92
11137--11263	57	2.2	57	87	11	177	10	39	37	13	1.79
11310--11441	32	4.2	32	92	3	205	14	31	36	18	1.90
10853--11501	339	1.9	340	93	2	1126	13	35	33	17	1.89
11487--11575	33	2.8	32	82	1	115	14	28	37	20	1.92
19890--20022	32	4.2	32	87	2	178	15	30	35	18	1.92
20079--20181	31	3.4	31	68	16	97	11	34	39	13	1.81
20057--20188	62	2.1	62	97	1	248	10	37	37	13	1.80
20234--20365	32	4.2	32	92	3	205	14	31	36	18	1.90
20412--20500	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!