Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009564.1 Hibiscus syriacus cultivar Beakdansim tig00116806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75890
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Found at i:7195 original size:32 final size:33
Alignment explanation
Indices: 7119--7203 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
7109 GTGTGCGTGA
* *
7119 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
7152 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
7184 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
7204 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:7330 original size:33 final size:32
Alignment explanation
Indices: 7288--7476 Score: 191
Period size: 33 Copynumber: 5.6 Consensus size: 32
7278 TTGTGCGTGA
*
7288 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
7320 GGCCTCGGTCACCATC-GCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * * *
7352 GTCTCGGTCACCATCGGTAACCCCGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC--CCA---G-GCGGGT
**
7392 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
7424 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
7457 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
7477 CCCCGGGCCA
Statistics
Matches: 130, Mismatches: 16, Indels: 21
0.78 0.10 0.13
Matches are distributed among these distances:
31 14 0.11
32 41 0.32
33 45 0.35
34 1 0.01
36 6 0.05
38 1 0.01
39 1 0.01
40 21 0.16
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:7402 original size:104 final size:106
Alignment explanation
Indices: 7280--7498 Score: 397
Period size: 104 Copynumber: 2.1 Consensus size: 106
7270 CAGGCCGCTT
*
7280 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATC-GCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
7344 AGACGGGTGTCTCGGTCACCATCGGTAACCCC-GGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
7384 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
7449 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
7490 GTGCGGGAG
1 GTGCGGGAG
7499 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 54 0.49
105 39 0.35
106 17 0.15
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:7476 original size:169 final size:164
Alignment explanation
Indices: 6817--7439 Score: 748
Period size: 169 Copynumber: 3.7 Consensus size: 164
6807 ACGTGTGCGT
**
6817 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATC-GCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
* *
6882 GTGCGGGAG-TGCCGCACAGAACCGAGC-GT-TGGTGCGGGAGCCTC-GTCACCATCAGGCCCCC
64 GTGCGGGAGCT-CGGCAC---ATCG-GCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC
* *
6943 GTGTGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
123 -TGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
6986 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTC-GTCACCATC-GCAACCCCGGCCATTGGT
1 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGT
* * *
7049 GCGGGAG-TGCCGCACAGTACCG-AGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GCGGGAGCT-CGGCACA-T-CGGCAG-TCTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC-TG
7112 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
125 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
7152 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATC-GCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
* * * *
7217 GTGCGGGAG-TGCCGCACAGAACCGAGC-GT-TGGTGCGGGAGTCTCGGTCACCATCAGGCCGCT
64 GTGCGGGAGCT-CGGCAC---ATCG-GCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGGCC-CC
*
7279 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
123 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
7321 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGCCATTGGT
1 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGT
** *
7386 GCGGGAGCCTCGGTCACCATCGGCAGTCCCAG-GCGGGTGGCCTCGGTCACCATC
66 GCGGGAG-CTCGG-CA-CATCGGCAGT-CTGGTGCGGG-AGCCTCGGTCACCATC
7440 GGCAAACCCA
Statistics
Matches: 412, Mismatches: 18, Indels: 48
0.86 0.04 0.10
Matches are distributed among these distances:
162 1 0.00
163 2 0.00
164 2 0.00
165 40 0.10
166 83 0.20
167 52 0.13
168 74 0.18
169 99 0.24
170 54 0.13
171 2 0.00
172 2 0.00
173 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (164 bp):
GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGT
GCGGGAGCTCGGCACATCGGCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTGCGTG
AGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:7544 original size:137 final size:137
Alignment explanation
Indices: 7111--7547 Score: 527
Period size: 137 Copynumber: 3.2 Consensus size: 137
7101 AGGCCCCCGT
* *
7111 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
7176 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCG
*
7241 AGCGTTG
131 GGCGTTG
* * ** *
7248 GTGCGGGAGTCTCGGTCACCATCAGGCCG--CTTGTGC--GTGAGCCTCGGTCACCATCGGCAAT
1 GTGCGGGAGCCTCGGTCACCATC-GGCAGTCCAAG-GCGGGTG-GCCTCGGTCACCATCGGCAAA
* * * * ** **
7309 CCCAGGCGGGTGGCCTCGGTCACCATC-GCAAACCC-AG--ACGGGTGTCTCG-GT-CAC-CATC
63 CCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTG-CGGGAGTGC-CGCA-C
* * *
7367 GGTAACCCCGGCCATTG
124 AG-AA--CCGGGCGTTG
*
7384 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
7449 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCG
7514 GGCGTTG
131 GGCGTTG
7521 GTGCGGGAGCCTCGGTCACCATCGGCA
1 GTGCGGGAGCCTCGGTCACCATCGGCA
7548 ACCCCCGACG
Statistics
Matches: 244, Mismatches: 35, Indels: 42
0.76 0.11 0.13
Matches are distributed among these distances:
132 3 0.01
133 10 0.04
134 4 0.02
135 8 0.03
136 84 0.34
137 111 0.45
138 7 0.03
139 4 0.02
140 10 0.04
141 3 0.01
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.16
Consensus pattern (137 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAGTCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCG
GGCGTTG
Found at i:7876 original size:11 final size:11
Alignment explanation
Indices: 7862--7893 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7852 TCCCGGTGGT
7862 GCTCCGGCGAC
1 GCTCCGGCGAC
*
7873 GCTCCGGCGAT
1 GCTCCGGCGAC
7884 GCTCCGGCGA
1 GCTCCGGCGA
7894 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:16133 original size:32 final size:33
Alignment explanation
Indices: 16053--16136 Score: 118
Period size: 32 Copynumber: 2.6 Consensus size: 33
16043 GTGTGCGTGA
* *
16053 GCCTCGGTCACCATC-GCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
16085 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
16117 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
16137 CCCCGGGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
32 34 0.72
33 13 0.28
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:16263 original size:33 final size:33
Alignment explanation
Indices: 16221--16409 Score: 179
Period size: 33 Copynumber: 5.6 Consensus size: 33
16211 TTGTGCGTGA
*
16221 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16254 GCCTCGGTCACCATCGGCAAACCCAGAC-GGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
16285 GTCTCGGTCACCATC-GTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
16324 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16358 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16390 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
16410 CCCCGGGCCA
Statistics
Matches: 127, Mismatches: 18, Indels: 23
0.76 0.11 0.14
Matches are distributed among these distances:
30 7 0.06
31 15 0.12
32 22 0.17
33 55 0.43
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
40 15 0.12
41 7 0.06
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:16340 original size:104 final size:106
Alignment explanation
Indices: 16213--16431 Score: 397
Period size: 104 Copynumber: 2.1 Consensus size: 106
16203 CAGGCCGCTT
*
16213 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
16278 AGAC-GGTGTCTCGGTCACCATC-GTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
16317 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
16382 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
16423 GTGCGGGAG
1 GTGCGGGAG
16432 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 67 0.61
105 18 0.16
106 25 0.23
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:16372 original size:169 final size:168
Alignment explanation
Indices: 15756--16325 Score: 937
Period size: 169 Copynumber: 3.4 Consensus size: 168
15746 ACGTGTGCGT
**
15756 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
15821 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTG
* *
15885 CGTGCGCCTCGGTCACCATCGGTAATCCAAGGC-GGTG
131 CGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
15922 GCCTCGGTCACCATCGGCAAACCCAGAC----GTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
15982 GTGC-GGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC-TG
16046 TGCGTGAGCCTCGGTCACCATC-GCAATCCAAGGCGGGTG
129 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
16085 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
16150 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGGCCGCTTGT
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCC-CCTGT
*
16215 GCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
130 GCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
16254 GCCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATC-GTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
16317 GTGCGGGAG
66 GTGCGGGAG
16326 CCTCGGTCAC
Statistics
Matches: 379, Mismatches: 13, Indels: 23
0.91 0.03 0.06
Matches are distributed among these distances:
160 37 0.10
161 24 0.06
162 39 0.10
163 54 0.14
166 26 0.07
167 49 0.13
168 56 0.15
169 94 0.25
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.16
Consensus pattern (168 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTG
CGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:16466 original size:104 final size:103
Alignment explanation
Indices: 16254--16562 Score: 320
Period size: 104 Copynumber: 3.1 Consensus size: 103
16244 CAGGCGGGTG
*
16254 GCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATC-GTAACCCCGGGCCATTGG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
* ** ** * * *
16318 TGCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GCGGGTG
66 TGCGGGAGTAC-CGCACAGAACCGGGC-GT--CGGTGCGGG-A
16358 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
16423 GTGCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
65 GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* * *
16462 GCCTCGGTCACCATCGGCAACCCCCGACGG-G--T--G---CC-TCGGCAACCCCAGGCCATTGG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
* *
16518 TGCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
66 TGCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
16557 GCCTCG
1 GCCTCG
16563 CACAGCGTCG
Statistics
Matches: 183, Mismatches: 16, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
94 45 0.25
95 18 0.10
98 1 0.01
100 1 0.01
102 1 0.01
103 2 0.01
104 55 0.30
105 23 0.13
106 33 0.18
107 4 0.02
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (103 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
TGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:16813 original size:11 final size:11
Alignment explanation
Indices: 16799--16830 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
16789 TCCCGGTGGT
16799 GCTCCGGCGAC
1 GCTCCGGCGAC
*
16810 GCTCCGGCGAT
1 GCTCCGGCGAC
16821 GCTCCGGCGA
1 GCTCCGGCGA
16831 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:24936 original size:32 final size:33
Alignment explanation
Indices: 24860--24944 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
24850 GTGTGCGTGC
* * *
24860 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
24893 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
24925 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
24945 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:25006 original size:169 final size:170
Alignment explanation
Indices: 24723--25303 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
24713 ACGTGTGCGT
**
24723 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
24788 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
24853 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
24893 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
24957 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
25022 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGC-GGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
25061 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
25126 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
25190 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
25230 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
25295 GTGCGGGAG
66 GTGCGGGAG
25304 CCTCGGTCAC
Statistics
Matches: 396, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
168 99 0.25
169 243 0.61
170 54 0.14
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:25070 original size:32 final size:32
Alignment explanation
Indices: 25029--25112 Score: 116
Period size: 32 Copynumber: 2.6 Consensus size: 32
25019 GTGTGCGTGA
* *
25029 GCCTCGGTCACCATCGGCAATCCAAGGC-GGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
25060 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
25093 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
25113 CCCCGGGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
32 44 0.94
33 3 0.06
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.15
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:25239 original size:33 final size:33
Alignment explanation
Indices: 25197--25387 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
25187 TTGTGCGTGA
*
25197 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
25230 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
25262 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
25302 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
25336 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
25368 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
25388 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:25271 original size:65 final size:66
Alignment explanation
Indices: 25197--25387 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
25187 TTGTGCGTGA
*
25197 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
25262 -
66 G
* * * * * **
25262 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
25327 AGGCGGGTG
58 AGACGGGTG
* *
25336 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
25388 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:25314 original size:106 final size:106
Alignment explanation
Indices: 25189--25409 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
25179 CAGGCCGCTT
*
25189 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
25254 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
25295 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
25360 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
25401 GTGCGGGAG
1 GTGCGGGAG
25410 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:25791 original size:11 final size:11
Alignment explanation
Indices: 25777--25808 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
25767 TCCCGGTGGT
25777 GCTCCGGCGAC
1 GCTCCGGCGAC
*
25788 GCTCCGGCGAT
1 GCTCCGGCGAC
25799 GCTCCGGCGA
1 GCTCCGGCGA
25809 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:33938 original size:32 final size:33
Alignment explanation
Indices: 33862--33946 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
33852 GTGTGCGTGC
* * *
33862 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
33895 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
33927 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
33947 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:34008 original size:169 final size:170
Alignment explanation
Indices: 33725--34306 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
33715 ACGTGTGCGT
**
33725 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
33790 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
33855 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
33895 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
33959 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
34024 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
34064 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
34129 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
34193 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
34233 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
34298 GTGCGGGAG
66 GTGCGGGAG
34307 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:34107 original size:32 final size:33
Alignment explanation
Indices: 34031--34115 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
34021 GTGTGCGTGA
* *
34031 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34064 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34096 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
34116 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:34242 original size:33 final size:33
Alignment explanation
Indices: 34200--34390 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
34190 TTGTGCGTGA
*
34200 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
34233 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
34265 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
34305 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
34339 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
34371 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
34391 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:34274 original size:65 final size:66
Alignment explanation
Indices: 34200--34390 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
34190 TTGTGCGTGA
*
34200 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
34265 -
66 G
* * * * * **
34265 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
34330 AGGCGGGTG
58 AGACGGGTG
* *
34339 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
34391 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:34317 original size:106 final size:106
Alignment explanation
Indices: 34192--34412 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
34182 CAGGCCGCTT
*
34192 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
34257 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
34298 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
34363 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
34404 GTGCGGGAG
1 GTGCGGGAG
34413 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:34796 original size:11 final size:11
Alignment explanation
Indices: 34782--34813 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
34772 TCCCGGTGGT
34782 GCTCCGGCGAC
1 GCTCCGGCGAC
*
34793 GCTCCGGCGAT
1 GCTCCGGCGAC
34804 GCTCCGGCGA
1 GCTCCGGCGA
34814 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:42946 original size:32 final size:33
Alignment explanation
Indices: 42870--42954 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
42860 GTGTGCGTGC
* * *
42870 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
42903 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
42935 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
42955 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:43016 original size:169 final size:170
Alignment explanation
Indices: 42733--43314 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
42723 ACGTGTGCGT
**
42733 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
42798 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
42863 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
42903 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
42967 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
43032 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
43072 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
43137 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
43201 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
43241 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
43306 GTGCGGGAG
66 GTGCGGGAG
43315 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:43115 original size:32 final size:33
Alignment explanation
Indices: 43039--43123 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
43029 GTGTGCGTGA
* *
43039 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
43072 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
43104 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
43124 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:43250 original size:33 final size:33
Alignment explanation
Indices: 43208--43398 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
43198 TTGTGCGTGA
*
43208 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
43241 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
43273 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
43313 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
43347 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
43379 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
43399 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:43282 original size:65 final size:66
Alignment explanation
Indices: 43208--43398 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
43198 TTGTGCGTGA
*
43208 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
43273 -
66 G
* * * * * **
43273 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
43338 AGGCGGGTG
58 AGACGGGTG
* *
43347 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
43399 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:43325 original size:106 final size:106
Alignment explanation
Indices: 43200--43420 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
43190 CAGGCCGCTT
*
43200 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
43265 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
43306 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
43371 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
43412 GTGCGGGAG
1 GTGCGGGAG
43421 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:43802 original size:11 final size:11
Alignment explanation
Indices: 43788--43819 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
43778 TCCCGGTGGT
43788 GCTCCGGCGAC
1 GCTCCGGCGAC
*
43799 GCTCCGGCGAT
1 GCTCCGGCGAC
43810 GCTCCGGCGA
1 GCTCCGGCGA
43820 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:51954 original size:32 final size:33
Alignment explanation
Indices: 51878--51962 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
51868 GTGTGCGTGC
* * *
51878 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
51911 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
51943 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
51963 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:52024 original size:169 final size:170
Alignment explanation
Indices: 51741--52322 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
51731 ACGTGTGCGT
**
51741 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
51806 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
51871 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
51911 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
51975 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
52040 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
52080 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
52145 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
52209 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
52249 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
52314 GTGCGGGAG
66 GTGCGGGAG
52323 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:52123 original size:32 final size:33
Alignment explanation
Indices: 52047--52131 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
52037 GTGTGCGTGA
* *
52047 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52080 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52112 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
52132 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:52258 original size:33 final size:33
Alignment explanation
Indices: 52216--52406 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
52206 TTGTGCGTGA
*
52216 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
52249 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
52281 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
52321 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
52355 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
52387 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
52407 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:52290 original size:65 final size:66
Alignment explanation
Indices: 52216--52406 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
52206 TTGTGCGTGA
*
52216 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
52281 -
66 G
* * * * * **
52281 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
52346 AGGCGGGTG
58 AGACGGGTG
* *
52355 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
52407 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:52333 original size:106 final size:106
Alignment explanation
Indices: 52208--52428 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
52198 CAGGCCGCTT
*
52208 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
52273 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
52314 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
52379 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
52420 GTGCGGGAG
1 GTGCGGGAG
52429 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:52812 original size:11 final size:11
Alignment explanation
Indices: 52798--52829 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
52788 TCCCGGTGGT
52798 GCTCCGGCGAC
1 GCTCCGGCGAC
*
52809 GCTCCGGCGAT
1 GCTCCGGCGAC
52820 GCTCCGGCGA
1 GCTCCGGCGA
52830 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:60937 original size:32 final size:32
Alignment explanation
Indices: 60859--60941 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 32
60849 GTGTGCGTGC
* * *
60859 GCCTCGGTCACCATCGGTAATCCAAGGCGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGTG
*
60891 GCCTC-GTCACCATCGGCAAACCCAGACGG-G
1 GCCTCGGTCACCATCGGCAAACCAAGACGGTG
*
60921 TGTCTCGGTCACCATCGGCAA
1 -GCCTCGGTCACCATCGGCAA
60942 CCCCGGCCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
30 1 0.02
31 24 0.55
32 19 0.43
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGTG
Found at i:60980 original size:167 final size:169
Alignment explanation
Indices: 60723--61298 Score: 1002
Period size: 167 Copynumber: 3.4 Consensus size: 169
60713 ACGTGTGCGT
**
60723 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATC-GCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
60787 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
60852 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGTG
60891 GCCTC-GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
60954 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
61019 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGC-GGTG
61059 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
61124 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
61188 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGG-G
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGTG
*
61226 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTC-GTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
61290 GTGCGGGAG
66 GTGCGGGAG
61299 CCTCGGTCAC
Statistics
Matches: 391, Mismatches: 13, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
166 35 0.09
167 181 0.46
168 24 0.06
169 89 0.23
170 62 0.16
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (169 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGTG
Found at i:61102 original size:32 final size:33
Alignment explanation
Indices: 61026--61110 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
61016 GTGTGCGTGA
* *
61026 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61059 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61091 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
61111 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:61233 original size:31 final size:32
Alignment explanation
Indices: 61195--61382 Score: 182
Period size: 31 Copynumber: 5.6 Consensus size: 32
61185 TTGTGCGTGA
*
61195 GCCTCGGTCACCATCGGCAATCCCAGGCGGG-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
61226 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * * *
61258 GTCTC-GTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-GCGGGT
**
61298 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
61330 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
61363 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
61383 CCCCGGGCCA
Statistics
Matches: 129, Mismatches: 16, Indels: 23
0.77 0.10 0.14
Matches are distributed among these distances:
31 42 0.33
32 28 0.22
33 31 0.24
36 6 0.05
39 2 0.02
40 8 0.06
41 12 0.09
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:61335 original size:33 final size:32
Alignment explanation
Indices: 61293--61382 Score: 126
Period size: 33 Copynumber: 2.8 Consensus size: 32
61283 GCCATTGGTG
* ** *
61293 CGGGAGCCTCGGTCACCATCGGCAGTCCCAGG
1 CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
61325 CGGGTGGCCTCGGTCACCATCGGCAAACCCAGA
1 CGGGT-GCCTCGGTCACCATCGGCAAACCCAGA
*
61358 CGGGTGTCTCGGTCACCATCGGCAA
1 CGGGTGCCTCGGTCACCATCGGCAA
61383 CCCCGGGCCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
32 23 0.44
33 29 0.56
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
Found at i:61367 original size:105 final size:104
Alignment explanation
Indices: 61187--61404 Score: 384
Period size: 105 Copynumber: 2.1 Consensus size: 104
61177 CAGGCCGCTT
*
61187 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGGCCTCGGTCACCATCGGCAAACCCAG
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGGCCTCGGTCACCATCGGCAAACCCAG
*
61252 ACGGGTGTCTC-GTCACCATCGGTAACCCCGGGCCATTG
66 ACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
61290 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGC-GG-GGCCTCGGTCACCATCGGCAAACCC
61355 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
64 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
61396 GTGCGGGAG
1 GTGCGGGAG
61405 TGCCGCACAG
Statistics
Matches: 109, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
103 34 0.31
104 2 0.02
105 38 0.35
106 35 0.32
ACGTcount: A:0.17, C:0.35, G:0.33, T:0.16
Consensus pattern (104 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGGCCTCGGTCACCATCGGCAAACCCAG
ACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:61503 original size:16 final size:16
Alignment explanation
Indices: 61482--61514 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
61472 CAACCCAGGC
61482 CATTGGTGCGGGAGTA
1 CATTGGTGCGGGAGTA
61498 CATTGGTGCGGGAGTA
1 CATTGGTGCGGGAGTA
61514 C
1 C
61515 CGCACAGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.42, T:0.24
Consensus pattern (16 bp):
CATTGGTGCGGGAGTA
Found at i:61798 original size:11 final size:11
Alignment explanation
Indices: 61784--61815 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
61774 TCCCGGTGGT
61784 GCTCCGGCGAC
1 GCTCCGGCGAC
*
61795 GCTCCGGCGAT
1 GCTCCGGCGAC
61806 GCTCCGGCGA
1 GCTCCGGCGA
61816 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:69921 original size:32 final size:33
Alignment explanation
Indices: 69845--69929 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
69835 GTGTGCGTGC
* * *
69845 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
69878 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
69910 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
69930 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:69991 original size:169 final size:170
Alignment explanation
Indices: 69708--70289 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
69698 ACGTGTGCGT
**
69708 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
69773 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
69838 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
69878 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
69942 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
70007 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
70047 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
70112 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
70176 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
70216 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
70281 GTGCGGGAG
66 GTGCGGGAG
70290 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:70090 original size:32 final size:33
Alignment explanation
Indices: 70014--70098 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
70004 GTGTGCGTGA
* *
70014 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
70047 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
70079 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
70099 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:70225 original size:33 final size:33
Alignment explanation
Indices: 70183--70373 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
70173 TTGTGCGTGA
*
70183 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70216 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
70248 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
70288 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70322 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70354 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
70374 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:70257 original size:65 final size:66
Alignment explanation
Indices: 70183--70373 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
70173 TTGTGCGTGA
*
70183 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
70248 -
66 G
* * * * * **
70248 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
70313 AGGCGGGTG
58 AGACGGGTG
* *
70322 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
70374 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:70300 original size:106 final size:106
Alignment explanation
Indices: 70175--70395 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
70165 CAGGCCGCTT
*
70175 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
70240 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
70281 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
70346 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
70387 GTGCGGGAG
1 GTGCGGGAG
70396 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:70777 original size:11 final size:11
Alignment explanation
Indices: 70763--70794 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70753 TCCCGGTGGT
70763 GCTCCGGCGAC
1 GCTCCGGCGAC
*
70774 GCTCCGGCGAT
1 GCTCCGGCGAC
70785 GCTCCGGCGA
1 GCTCCGGCGA
70795 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Done.