Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01009565.1 Hibiscus syriacus cultivar Beakdansim tig00116918_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2708
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30


Found at i:559 original size:19 final size:18

Alignment explanation


    Indices: 535--572  Score: 67
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        525 GTCCATCTTT

                               
        535 TTAATATAATCTATATATA
          1 TTAATATAATCT-TATATA

                              
        554 TTAATATAATCTTATATA
          1 TTAATATAATCTTATATA

             
        572 T
          1 T

        573 AAGACATCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    7  0.37
  19   12  0.63

ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50


Consensus pattern (18 bp):   
TTAATATAATCTTATATA
Done.