genome.fa.s9567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009567.1 Hibiscus syriacus cultivar Beakdansim tig00116926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158088

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4173--4258	21	4.1	21	84	3	102	37	19	41	1	1.59
4181--4269	21	4.2	21	84	4	90	38	20	40	1	1.60
4625--4832	43	4.9	44	77	10	166	32	22	18	27	1.97
4896--4938	12	3.2	13	80	12	52	9	18	27	44	1.80
5790--5822	17	1.9	17	88	11	50	54	0	3	42	1.15
7231--7286	3	18.7	3	96	0	103	64	0	1	33	1.04
7422--8270	116	7.4	116	93	2	1328	29	20	13	35	1.91
9033--9508	83	5.7	83	93	1	812	36	22	13	26	1.92
10541--10612	8	9.4	8	79	8	87	0	16	0	83	0.65
10541--10612	23	3.1	23	86	11	103	0	16	0	83	0.65
10558--10615	10	5.7	10	82	11	73	0	15	0	84	0.62
23385--23445	3	19.7	3	90	6	95	62	0	0	37	0.96
29708--29830	30	4.1	30	82	6	124	20	30	27	21	1.98
29693--29830	60	2.3	60	76	9	138	21	28	28	21	1.98
31005--31127	30	4.1	30	86	2	149	16	32	29	21	1.95
32049--32144	35	2.7	35	85	3	131	39	23	2	34	1.67
32628--32919	148	2.0	149	90	0	460	45	9	7	37	1.64
33495--33533	20	2.0	20	94	0	69	33	20	20	25	1.97
33516--33743	86	2.6	86	80	8	273	35	23	13	27	1.93
33693--33750	22	2.6	22	97	0	107	27	27	13	31	1.94
33796--33851	20	2.9	19	76	10	60	25	10	30	33	1.90
39528--39598	29	2.4	30	80	4	81	33	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41061--41110	21	2.4	21	93	0	82	26	16	24	34	1.95
41652--42049	113	3.5	113	89	2	645	26	18	15	39	1.90
42060--42241	76	2.4	76	87	1	267	34	20	20	25	1.97
42921--42970	21	2.3	22	89	6	84	40	16	12	32	1.84
43337--43444	57	1.9	54	90	5	171	24	24	15	36	1.94
44586--44652	35	1.9	35	88	11	102	29	20	11	37	1.89
45567--45905	114	3.0	114	92	1	545	31	18	14	35	1.91
48390--48439	2	25.0	2	100	0	100	50	0	0	50	1.00
50090--50117	12	2.3	12	100	0	56	53	7	14	25	1.66
50057--50116	27	2.3	27	79	2	77	58	8	11	21	1.59
52306--52363	28	2.2	26	84	6	71	60	1	5	32	1.29
53617--54229	303	2.0	307	98	1	1189	39	17	16	26	1.91
54927--54976	3	18.0	3	80	15	54	68	4	0	28	1.08
54927--54982	19	3.0	18	84	7	76	69	3	0	26	1.04
54927--54987	22	2.8	21	85	14	72	68	4	0	26	1.09
58102--58161	29	2.1	29	93	0	102	31	13	11	43	1.80
60730--60812	44	1.9	44	85	7	116	48	4	4	42	1.45
61422--61493	34	2.1	34	84	7	92	47	1	4	47	1.30
61636--61673	20	1.9	20	88	0	58	21	26	10	42	1.85
63605--63641	2	19.0	2	94	5	67	51	0	0	48	1.00
68318--68349	3	10.3	3	93	6	55	68	0	0	31	0.90
68318--68362	6	6.7	7	90	10	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68294--68362	15	4.9	15	76	16	60	63	2	1	31	1.18
68563--68889	130	2.5	133	87	5	450	24	18	29	26	1.98
68664--68860	43	4.6	43	75	12	188	22	19	31	26	1.98
68739--68899	83	1.9	85	84	7	218	22	19	31	26	1.98
68938--68999	28	2.2	28	82	5	81	50	12	12	24	1.76
69503--69546	15	2.9	15	93	0	70	43	4	20	31	1.72
69535--69609	31	2.4	30	82	8	80	40	13	14	32	1.85
69642--69721	40	2.0	40	87	4	117	37	11	20	31	1.87
69703--69827	64	2.0	64	88	1	189	43	11	14	31	1.80
69725--69948	120	1.9	119	81	8	276	41	12	14	30	1.84
70060--70186	37	3.6	37	67	16	108	45	11	11	31	1.76
69995--70219	67	3.4	65	86	5	285	46	12	11	30	1.76
70097--70271	95	1.9	94	85	3	244	42	14	9	33	1.78
70164--70232	28	2.5	28	90	4	104	43	14	7	34	1.73
70335--70431	29	3.5	28	86	8	128	46	15	10	27	1.78
70682--70779	36	2.8	35	81	3	117	33	12	18	35	1.88
70683--70801	36	3.4	36	80	6	111	35	12	21	31	1.90
70753--70985	105	2.2	100	83	9	272	37	12	19	30	1.88
71461--71498	4	10.0	4	88	11	62	23	0	26	50	1.50
71453--71502	26	2.0	25	92	4	82	24	2	24	50	1.60
72675--72712	11	3.4	11	89	7	58	5	13	10	71	1.30
72670--72717	12	3.9	12	81	8	53	4	12	12	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73337--73407	20	3.0	24	69	22	78	40	11	23	23	1.87
73324--73398	20	3.5	20	70	20	62	37	10	25	26	1.89
73334--73413	26	3.3	26	68	20	82	42	10	23	23	1.84
73322--73415	46	2.1	45	91	2	152	38	9	25	26	1.87
75847--75908	32	2.0	32	96	3	117	61	9	14	14	1.57
79542--79576	3	11.3	3	93	6	61	68	0	0	31	0.90
79542--79589	6	6.7	7	82	17	55	66	0	0	33	0.92
79518--79589	15	4.9	15	71	21	55	63	2	1	31	1.17
81517--81626	39	2.8	39	75	14	102	37	20	0	42	1.52
105760--105809	26	2.0	25	92	4	82	40	18	12	30	1.86
117442--117574	60	2.2	60	83	9	157	38	15	15	31	1.88
118712--118757	16	2.9	16	78	12	58	30	0	0	69	0.89
119267--119324	26	2.2	26	81	6	64	48	8	0	43	1.34
122244--122283	20	2.0	20	100	0	80	35	20	15	30	1.93
122630--122681	20	2.6	20	96	0	95	38	26	13	21	1.90
122737--122930	20	9.6	20	76	8	76	35	25	19	19	1.95
122756--122930	40	4.4	39	82	3	197	34	26	19	19	1.96
122756--122929	60	2.9	60	85	0	249	34	26	19	19	1.96
123295--123365	33	2.2	33	92	0	115	11	22	18	47	1.80
123486--123540	14	3.6	14	73	21	56	41	23	25	9	1.83
123486--123556	33	2.2	33	94	0	124	43	25	22	8	1.81
123552--123649	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123574--123663	14	5.7	14	74	23	81	8	25	23	42	1.83
123557--123671	33	3.5	33	95	0	212	9	24	20	45	1.81
125369--125835	185	2.5	186	98	0	909	22	12	18	46	1.83
125369--125835	93	5.0	93	98	0	909	22	12	18	46	1.83
125867--125995	19	7.3	19	75	17	125	45	28	17	8	1.77
125903--125995	33	2.8	32	91	4	150	46	27	18	7	1.76
125867--125995	52	2.5	52	74	14	140	45	28	17	8	1.77
125991--126125	19	7.6	19	75	16	128	11	19	23	45	1.82
126013--126069	14	3.7	14	77	20	60	10	21	22	45	1.82
125996--126088	33	2.8	33	95	0	168	10	20	21	47	1.80
128049--128084	14	2.6	14	95	0	63	33	0	22	44	1.53
128191--128292	19	5.6	19	84	13	151	44	17	23	14	1.86
128299--128613	33	9.1	36	82	14	300	14	21	17	46	1.83
128321--128641	19	18.4	19	78	18	369	13	20	18	47	1.83
128299--128613	52	6.0	52	83	11	412	14	21	17	46	1.83
128359--128413	14	3.6	14	78	21	65	10	20	20	49	1.78
130920--130944	12	2.1	12	100	0	50	0	28	0	72	0.86
131118--131164	24	2.0	24	87	8	69	38	21	14	25	1.92
131846--132214	20	18.5	20	86	4	458	20	18	26	34	1.96
132812--132847	16	2.2	16	90	9	56	66	8	0	25	1.19
132813--132855	17	2.5	17	81	7	52	69	6	0	23	1.12
134411--134447	17	2.1	18	85	14	51	27	13	0	59	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139178--139217	21	1.9	21	94	0	71	30	17	2	50	1.59
139192--139256	31	2.1	30	83	8	78	30	21	4	43	1.73
141980--142062	12	6.7	12	74	15	71	40	0	0	59	0.98
141989--142057	26	2.7	26	76	14	72	43	0	0	56	0.99
141965--142090	64	2.0	62	90	7	202	41	0	1	57	1.08
142257--142434	21	8.5	21	77	10	127	19	20	27	32	1.97
142623--142675	19	2.7	19	76	21	56	33	0	1	64	1.05
143132--143191	31	1.9	31	93	0	102	43	10	6	40	1.64
145148--145233	42	2.0	43	82	10	106	51	2	0	46	1.13
150855--150981	2	64.5	2	88	3	195	48	2	0	48	1.20

Tables:   1   2