genome.fa.s9569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009569.1 Hibiscus syriacus cultivar Beakdansim tig00116928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171409

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15420--15471	24	2.2	24	82	6	61	51	5	7	34	1.54
16554--16592	18	2.3	18	86	8	55	61	5	5	28	1.39
19147--19201	27	2.0	27	82	6	67	65	3	1	29	1.20
22184--22221	14	2.6	15	87	4	51	31	0	2	65	1.06
22335--22432	39	2.7	35	75	18	92	27	2	3	67	1.17
22354--22491	47	3.0	43	81	12	152	30	2	1	65	1.13
22393--22494	13	8.2	13	68	22	67	29	1	0	68	1.00
22410--22557	23	6.3	23	68	14	72	22	5	0	71	1.06
22450--22521	35	2.1	34	82	12	85	19	5	0	75	1.00
22450--22529	33	2.4	33	78	17	78	18	6	0	75	1.01
26680--26799	32	3.8	32	86	2	152	30	14	19	36	1.91
27376--27593	107	2.0	107	83	2	269	33	23	20	22	1.97
27850--28008	87	1.8	87	91	2	266	33	17	12	35	1.88
27937--28175	101	2.4	102	88	0	345	30	18	12	38	1.87
28076--28148	37	2.0	37	94	0	128	26	19	13	41	1.88
28213--28315	36	2.8	37	86	2	163	27	20	15	36	1.93
28227--28412	102	1.8	102	84	4	259	27	18	13	39	1.89
28330--28446	36	3.2	36	85	4	164	26	19	13	40	1.89
29609--29664	23	2.7	20	73	15	51	23	5	5	66	1.34
29618--29663	24	2.0	23	83	12	58	19	6	4	69	1.28
29678--29714	2	18.5	2	94	0	65	45	0	0	54	1.00
29677--29719	10	4.2	10	90	3	59	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29712--29802	8	10.1	9	73	20	59	16	3	1	79	0.93
29724--29815	26	3.7	24	76	12	78	16	4	1	78	0.97
29712--29803	18	5.0	18	75	18	75	16	3	1	79	0.92
29727--29804	9	9.0	8	78	13	75	16	2	1	79	0.91
39630--39690	32	1.9	32	83	12	81	14	29	3	52	1.58
46615--46656	15	2.9	15	82	7	50	33	0	0	66	0.92
46641--46667	10	2.7	10	100	0	54	25	0	0	74	0.83
46679--46824	79	1.8	79	84	8	199	51	5	5	37	1.48
53907--53998	19	5.6	16	71	22	66	38	1	0	60	1.04
53909--54006	48	2.0	47	81	14	112	37	1	0	61	1.03
53905--53991	34	2.7	32	75	19	90	40	1	0	58	1.05
53918--54006	16	5.2	16	72	17	72	38	1	0	60	1.04
58072--58144	31	2.4	31	88	0	110	32	9	6	50	1.61
58205--58264	31	1.9	31	86	0	84	51	1	3	43	1.28
58281--58340	24	2.4	25	83	8	77	53	0	5	41	1.23
59929--59963	3	11.3	3	93	6	61	34	0	0	65	0.93
60016--60084	9	7.7	9	72	4	50	23	8	0	68	1.17
59929--60071	18	7.6	18	68	18	62	28	7	0	62	1.27
60221--60261	2	20.5	2	100	0	82	48	0	0	51	1.00
60561--60639	5	14.8	5	71	17	52	15	2	2	79	0.94
60562--60608	21	2.3	20	85	7	69	17	2	0	80	0.80
60565--60636	33	2.1	35	82	14	89	13	2	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60557--60638	28	3.1	27	77	13	82	13	2	3	80	0.95
71161--71204	22	2.1	21	83	8	54	77	2	20	0	0.88
71953--72725	105	7.3	105	96	0	1357	34	25	17	22	1.96
74339--74392	2	29.5	2	75	17	55	40	0	1	57	1.09
74322--74402	33	2.5	33	77	18	98	35	2	2	59	1.24
74960--75006	21	2.3	20	85	7	69	19	2	0	78	0.85
76851--76884	3	11.3	3	87	12	52	32	2	0	64	1.08
78105--78150	23	2.0	24	86	4	67	17	2	6	73	1.14
78485--78518	16	2.1	16	89	10	52	17	8	11	61	1.54
81626--81782	84	1.9	84	93	2	271	24	12	21	42	1.86
99093--99166	24	3.1	24	94	0	121	40	21	16	21	1.91
99121--99178	24	2.4	24	85	5	64	46	20	8	24	1.78
103152--103384	51	4.6	50	85	2	297	24	13	15	47	1.81
103153--103368	101	2.1	102	85	3	292	24	13	15	46	1.81
106257--106298	3	14.0	3	94	0	75	64	2	0	33	1.07
108591--108638	19	2.6	19	87	9	64	18	25	25	31	1.98
123297--123335	13	2.9	13	81	7	51	58	0	2	38	1.12
130321--130396	36	2.1	36	97	0	143	43	14	10	31	1.79
134872--134900	14	2.1	14	100	0	58	13	44	27	13	1.82
135322--135397	36	2.1	36	97	0	143	43	14	10	31	1.79
142286--142325	19	2.1	19	100	0	80	37	15	20	27	1.92
151737--152844	228	4.9	229	90	2	1401	21	25	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153904--153942	17	2.3	17	95	0	69	23	35	15	25	1.94
156694--156731	20	1.9	20	88	0	58	60	2	0	36	1.11
158288--158350	4	15.8	4	93	0	99	28	49	20	1	1.58
158339--158383	21	2.1	21	91	0	72	37	42	11	8	1.72
158376--160380	4	512.0	4	90	6	3173	48	25	1	24	1.58
161077--161102	12	2.2	12	100	0	52	30	15	15	38	1.88
161656--161727	2	36.5	2	97	2	137	50	0	0	50	1.00
163468--163917	41	11.1	41	78	6	382	28	19	17	35	1.94
163506--163907	160	2.5	161	80	7	417	28	19	17	34	1.94
163468--163907	81	5.5	79	78	5	325	28	19	17	34	1.94
166292--166339	2	24.5	2	82	4	62	56	0	2	41	1.11
167645--167948	42	7.2	42	81	9	275	23	24	19	31	1.98
167645--167929	85	3.4	87	77	13	233	24	24	19	31	1.98

Tables:   1

The End!