genome.fa.s9570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009570.1 Hibiscus syriacus cultivar Beakdansim tig00116932_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102255

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5640--5679	19	2.1	19	100	0	80	37	15	20	27	1.92
15097--16204	228	4.9	229	89	2	1392	21	25	25	28	1.99
15090--16204	455	2.4	456	85	2	1477	21	24	25	28	1.99
17265--17303	17	2.3	17	95	0	69	23	35	15	25	1.94
19101--19142	22	2.0	20	86	9	57	26	0	0	73	0.83
20061--20098	20	1.9	20	88	0	58	60	2	0	36	1.11
21661--21740	12	6.2	12	75	13	61	32	47	16	3	1.64
21659--21719	4	15.2	4	92	0	95	27	49	21	1	1.59
21708--21752	21	2.1	21	91	0	72	37	42	11	8	1.72
21745--23693	4	490.0	4	96	1	3607	49	25	0	24	1.55
24398--24425	13	2.2	13	100	0	56	35	14	14	35	1.86
24988--25060	2	37.5	2	94	5	132	47	0	0	52	1.00
26827--27282	41	11.1	41	81	4	436	28	18	17	35	1.94
29691--29737	2	23.5	2	95	0	85	53	0	0	46	1.00
31065--31368	43	7.2	42	80	9	266	23	24	19	31	1.98
31100--31336	84	2.8	83	80	11	232	24	25	18	31	1.98
58399--58425	9	3.0	9	100	0	54	11	11	55	22	1.66
70352--70392	15	2.7	15	84	0	55	19	48	14	17	1.81
70778--70963	96	1.9	96	95	0	336	24	25	23	25	2.00
73683--73713	11	2.9	11	95	4	55	83	0	0	16	0.64
74976--75093	21	5.7	21	72	4	114	20	17	25	36	1.94
74972--75090	41	2.9	41	96	2	213	20	18	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74997--75069	20	3.6	20	74	7	76	13	20	24	41	1.89
75746--75777	6	5.3	6	100	0	64	0	18	46	34	1.49
75894--75937	21	2.1	21	86	0	61	34	29	15	20	1.94
77032--77095	27	2.4	27	94	0	110	34	28	10	26	1.90
79726--79795	35	2.0	36	82	2	88	30	17	14	38	1.89
85899--85949	21	2.4	21	80	0	66	31	23	17	27	1.97
85899--85956	21	2.8	20	78	5	53	32	25	15	25	1.95
85922--86041	63	1.9	63	86	3	170	31	31	16	20	1.95
86489--86545	23	2.5	24	77	5	64	28	0	3	68	1.06
89683--89717	18	2.0	18	88	5	54	60	11	0	28	1.32
89824--89860	16	2.4	15	90	4	56	70	0	0	29	0.88
92323--92395	29	2.5	29	93	0	128	39	23	6	30	1.81
95603--95855	6	42.2	6	100	0	506	50	16	0	33	1.46
97417--97460	23	1.9	23	100	0	88	52	15	22	9	1.71

Tables:   1

The End!