Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009573.1 Hibiscus syriacus cultivar Beakdansim tig00116938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1247605
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:668609 original size:21 final size:21
Alignment explanation
Indices: 668523--668618 Score: 84
Period size: 21 Copynumber: 4.6 Consensus size: 21
668513 TCGAGGGTTC
* *
668523 TATGTGGTCCTTTGGGATATA
1 TATGTGGTCCTTTGGAACATA
** *
668544 TATGTAATCCTTGGGAACATA
1 TATGTGGTCCTTTGGAACATA
* * * *
668565 TATGCGGTTCTTCGGAACACA
1 TATGTGGTCCTTTGGAACATA
* *
668586 TATTTGGTCCTTTGGAATATA
1 TATGTGGTCCTTTGGAACATA
*
668607 TATGTGATCCTT
1 TATGTGGTCCTT
668619 AAGGAGTTGT
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.40
Consensus pattern (21 bp):
TATGTGGTCCTTTGGAACATA
Found at i:670467 original size:18 final size:18
Alignment explanation
Indices: 670444--670491 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
670434 TATGACTCAG
*
670444 AGAGGAAGGGGTAGTGGT
1 AGAGGAAGAGGTAGTGGT
670462 AGAGGAAGAGGTAGTGGT
1 AGAGGAAGAGGTAGTGGT
670480 AGAGGAAGAGGT
1 AGAGGAAGAGGT
670492 CAACCTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15
Consensus pattern (18 bp):
AGAGGAAGAGGTAGTGGT
Found at i:674743 original size:20 final size:21
Alignment explanation
Indices: 674706--674759 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
674696 ACATTCATGT
674706 AGTATCGATA-CATGAAGGAT-
1 AGTATCGATACCATGAAGG-TC
*
674726 GGTATCGATACCAT-AAGGTC
1 AGTATCGATACCATGAAGGTC
674746 AGTATCGATACCAT
1 AGTATCGATACCAT
674760 TTTTAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 26 0.87
21 3 0.10
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (21 bp):
AGTATCGATACCATGAAGGTC
Found at i:674815 original size:19 final size:19
Alignment explanation
Indices: 674791--674830 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
674781 ATGAAAATTG
674791 GGTATCGATACCCA-AGCTA
1 GGTATCGATA-CCATAGCTA
674810 GGTATCGATACCATAGCTA
1 GGTATCGATACCATAGCTA
674829 GG
1 GG
674831 GAAGTATCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (19 bp):
GGTATCGATACCATAGCTA
Found at i:678000 original size:54 final size:54
Alignment explanation
Indices: 677935--678249 Score: 477
Period size: 54 Copynumber: 5.8 Consensus size: 54
677925 CTATACGGAC
* *
677935 ATTCATAAACATATTATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
* * *
677989 GTTCATCAACATATGATGAATTCCGTGAATTGCACATTTAGTGCCGAAACGATT
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
* * *
678043 ATTCATCAACATATGATGAATTTCGTCAATTGCACACTTAGTGCCCAAACGGTT
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
* * * *
678097 ATTCATTAACATATGATGAATTCCATGAATTGCACACTTAGTGCCAAAAAGGTT
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
**
678151 ATTCATCAACATATGATGAATTATGTGAATTGCACACTTAGTGCCGAAACGGTT
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
* * *
678205 ATTCATCAACATATGATGAATTTCGTGAATTACATACTTAGTGCC
1 ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCC
678250 TATTTGTTAA
Statistics
Matches: 234, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 234 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Consensus pattern (54 bp):
ATTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTT
Found at i:680723 original size:86 final size:83
Alignment explanation
Indices: 680627--680785 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 83
680617 TAAAAATAAT
* *
680627 ATAATATGTTTTCAAAGATTATATATATTATATATGTTTTC-GAAAT-TTTTTAAAAAACTATAT
1 ATAATATGTTTTCAAA-A--A-ATATATTATATATGTTTTCAAAAATCGTTTTAAAAAACTATAT
680690 ATATATATATATATGTTTTCAAA
62 ATAT-TATATATATGTTTTCAAA
*
680713 ATAATATGTTTTCAAAAACTATATTATATATGTTTTCAAAAAATCGTTTTAAAAAACTATATATA
1 ATAATATGTTTTCAAAAAATATATTATATATGTTTTC-AAAAATCGTTTTAAAAAACTATATATA
680778 TTATATAT
65 TTATATAT
680786 TTTTGTAATT
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
82 18 0.27
83 1 0.01
84 11 0.16
85 21 0.31
86 16 0.24
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (83 bp):
ATAATATGTTTTCAAAAAATATATTATATATGTTTTCAAAAATCGTTTTAAAAAACTATATATAT
TATATATATGTTTTCAAA
Found at i:680736 original size:17 final size:15
Alignment explanation
Indices: 680698--680729 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
680688 ATATATATAT
680698 ATATATGTTTTCAAA
1 ATATATGTTTTCAAA
680713 ATAATATGTTTTCAAA
1 AT-ATATGTTTTCAAA
680729 A
1 A
680730 ACTATATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (15 bp):
ATATATGTTTTCAAA
Found at i:680741 original size:42 final size:41
Alignment explanation
Indices: 680646--680789 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 41
680636 TTTCAAAGAT
* *
680646 TATATATATTATATATGTTTTC--GAAAT-TTTTTAAAAAAC
1 TATATATA-TATATATGTTTTCAAAAAATCGTTTTAAAAAAC
* *
680685 TATATATATATATATATATGTTTTCAAAATAATATGTTTTCAAAAAC
1 ----TATATATATATATATGTTTTCAAAA-AAT-CGTTTTAAAAAAC
680732 --TATAT-TATATATGTTTTCAAAAAATCGTTTTAAAAAAC
1 TATATATATATATATGTTTTCAAAAAATCGTTTTAAAAAAC
680770 TATATATATTATATAT-TTTT
1 TATATATA-TATATATGTTTT
680790 GTAATTATTA
Statistics
Matches: 87, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
38 11 0.13
39 3 0.03
40 22 0.25
41 9 0.10
42 20 0.23
43 8 0.09
44 1 0.01
45 3 0.03
47 10 0.11
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (41 bp):
TATATATATATATATGTTTTCAAAAAATCGTTTTAAAAAAC
Found at i:680762 original size:38 final size:41
Alignment explanation
Indices: 680691--680788 Score: 139
Period size: 40 Copynumber: 2.4 Consensus size: 41
680681 AAACTATATA
* *
680691 TATATATATATATGTTTTCAAAATAATATGTTTTCAAAAAC
1 TATATATATATATGTTTTCAAAATAATACGTTTTAAAAAAC
680732 TATAT-TATATATGTTTTCAAAA-AAT-CGTTTTAAAAAAC
1 TATATATATATATGTTTTCAAAATAATACGTTTTAAAAAAC
*
680770 TATATATATTATATATTTT
1 TATATATA-TATATGTTTT
680789 TGTAATTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
38 16 0.31
39 5 0.10
40 26 0.50
41 5 0.10
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (41 bp):
TATATATATATATGTTTTCAAAATAATACGTTTTAAAAAAC
Found at i:688465 original size:18 final size:18
Alignment explanation
Indices: 688442--688478 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
688432 ACTGAATATT
*
688442 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
688460 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
688478 T
1 T
688479 AATCCCTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:688692 original size:17 final size:17
Alignment explanation
Indices: 688670--688704 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
688660 ACTGAATATT
*
688670 TGTCCGAATGACCACTA
1 TGTCCGAAGGACCACTA
688687 TGTCCGAAGGACCACTA
1 TGTCCGAAGGACCACTA
688704 T
1 T
688705 AATCCCTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (17 bp):
TGTCCGAAGGACCACTA
Found at i:688775 original size:226 final size:230
Alignment explanation
Indices: 688379--688835 Score: 877
Period size: 226 Copynumber: 2.0 Consensus size: 230
688369 GCGAGTACAC
688379 TGAGGTTGTGCACAATGCTGTCACCACAACTTGAATAAAATACCACTAGGGGCACTGAATATTTG
1 TGAGGTTGTGCACAATGCTGTCACCACAACTTGAATAAAATACCACTAGGGGCACTGAATATTTG
688444 TCCCGAATGACCACTATGTCCCGAAGGACCACTATAATCCCTCGACACTTGGCATGCCAATTATA
66 TCCCGAATGACCACTATGTCCCGAAGGACCACTATAATCCCTCGACACTTGGCATGCCAATTATA
688509 CCTAAAGCTCTCACATTAAGTAACATGGGCTTAATTATAATACAATTCTCATTTTCATATCTCTT
131 CCTAAAGCTCTCACATTAAGTAACATGGGCTTAATTATAATACAATTCTCATTTTCATATCTCTT
*
688574 CTATCACTTTTCACATAAA-ACA-CATTCACTTCA
196 CTATCACTTTTCACATAAACACATAATTCACTTCA
688607 TGAGGTTGTGCACAATGCTGTCACCACAACTTGAATAAAATACCACTAGGGGCACTGAATATTTG
1 TGAGGTTGTGCACAATGCTGTCACCACAACTTGAATAAAATACCACTAGGGGCACTGAATATTTG
688672 T-CCGAATGACCACTATGT-CCGAAGGACCACTATAATCCCTCGACACTTGGCATGCCAATTATA
66 TCCCGAATGACCACTATGTCCCGAAGGACCACTATAATCCCTCGACACTTGGCATGCCAATTATA
688735 CCTAAAGCTCTCACATTAAGTAACATGGGCTTAATTATAATACAATTCTCATTTTCATATCTCTT
131 CCTAAAGCTCTCACATTAAGTAACATGGGCTTAATTATAATACAATTCTCATTTTCATATCTCTT
688800 CTATCACTTTTCACATAAACACATAATTCACTTCA
196 CTATCACTTTTCACATAAACACATAATTCACTTCA
688835 T
1 T
688836 ATGAGTACAC
Statistics
Matches: 226, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
226 129 0.57
227 20 0.09
228 77 0.34
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (230 bp):
TGAGGTTGTGCACAATGCTGTCACCACAACTTGAATAAAATACCACTAGGGGCACTGAATATTTG
TCCCGAATGACCACTATGTCCCGAAGGACCACTATAATCCCTCGACACTTGGCATGCCAATTATA
CCTAAAGCTCTCACATTAAGTAACATGGGCTTAATTATAATACAATTCTCATTTTCATATCTCTT
CTATCACTTTTCACATAAACACATAATTCACTTCA
Found at i:693172 original size:21 final size:21
Alignment explanation
Indices: 693146--693186 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
693136 TCGTCAAAAT
*
693146 GTAATTTCATCATATTAGCAG
1 GTAATTTCATCAGATTAGCAG
693167 GTAATTTCATCAGATTAGCA
1 GTAATTTCATCAGATTAGCA
693187 AGAAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
GTAATTTCATCAGATTAGCAG
Found at i:693193 original size:21 final size:21
Alignment explanation
Indices: 693148--693193 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
693138 GTCAAAATGT
* * *
693148 AATTTCATCATATTAGCAGGT
1 AATTTCATCAGATTAGCAAGA
693169 AATTTCATCAGATTAGCAAGA
1 AATTTCATCAGATTAGCAAGA
693190 AATT
1 AATT
693194 CAATTCCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (21 bp):
AATTTCATCAGATTAGCAAGA
Found at i:699000 original size:6 final size:6
Alignment explanation
Indices: 698991--699018 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
698981 TTAAAAGTTA
698991 AAATTT AAATTT AAATTT AAATTT AAAT
1 AAATTT AAATTT AAATTT AAATTT AAAT
699019 ATTCGATCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:700284 original size:15 final size:15
Alignment explanation
Indices: 700264--700299 Score: 56
Period size: 14 Copynumber: 2.4 Consensus size: 15
700254 TTATTGGACC
700264 TAAATAAAAATAAAA
1 TAAATAAAAATAAAA
700279 TAAAT-AAAATAAAA
1 TAAATAAAAATAAAA
700293 TGAAATA
1 T-AAATA
700300 GATAGATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (15 bp):
TAAATAAAAATAAAA
Found at i:700534 original size:38 final size:41
Alignment explanation
Indices: 700457--700593 Score: 120
Period size: 40 Copynumber: 3.3 Consensus size: 41
700447 TATATATATA
*
700457 TATATATATATATGTTTTCAAAATAATATATTTTCAAAAAC-
1 TATAT-TATATATGTTTTCAAAATAATATATTTTAAAAAACT
* *
700498 TATATTATATATGTTTTCAAAA-AA-CTGTTTTAAAAAACTT
1 TATATTATATATGTTTTCAAAATAATATATTTTAAAAAAC-T
* * ** *
700538 TATATTATAT-TTTTTTCAAATTTATATAATATGTTTTCAAAACC
1 TATATTATATATGTTTTCAAA-ATA-AT-ATAT-TTTAAAAAACT
700582 TATATTATATAT
1 TATATTATATAT
700594 ATTCAAAAAC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
38 11 0.14
39 11 0.14
40 27 0.35
41 6 0.08
42 1 0.01
44 12 0.16
45 9 0.12
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.48
Consensus pattern (41 bp):
TATATTATATATGTTTTCAAAATAATATATTTTAAAAAACT
Found at i:700576 original size:21 final size:22
Alignment explanation
Indices: 700536--700578 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
700526 TTTAAAAAAC
* *
700536 TTTATATTATATTTTTTTCAAA
1 TTTATATAATATTGTTTTCAAA
700558 TTTATATAATA-TGTTTTCAAA
1 TTTATATAATATTGTTTTCAAA
700579 ACCTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTATATAATATTGTTTTCAAA
Found at i:700585 original size:22 final size:22
Alignment explanation
Indices: 700560--700620 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
700550 TTTTCAAATT
* * *
700560 TATATAATATGTTTTCAAAACC
1 TATATAATATATATTCAAAAAC
*
700582 TATATTATATATATTCAAAAAC
1 TATATAATATATATTCAAAAAC
700604 TATATATATTATATATT
1 TATATA-A-TATATATT
700621 TTGAAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 23 0.72
23 1 0.03
24 8 0.25
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (22 bp):
TATATAATATATATTCAAAAAC
Found at i:700593 original size:24 final size:23
Alignment explanation
Indices: 700538--700593 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 23
700528 TAAAAAACTT
* **
700538 TATATTATAT-TTTTTTCAAATT
1 TATATTATATATGTTTTCAAACC
700560 TATA-TA-ATATGTTTTCAAAACC
1 TATATTATATATGTTTTC-AAACC
700582 TATATTATATAT
1 TATATTATATAT
700594 ATTCAAAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 2 0.07
21 8 0.30
22 11 0.41
23 2 0.07
24 4 0.15
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (23 bp):
TATATTATATATGTTTTCAAACC
Found at i:700611 original size:26 final size:27
Alignment explanation
Indices: 700582--700649 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
700572 TTTCAAAACC
700582 TATATTATATATATTCAAA-AACTATA
1 TATATTATATATATTCAAATAACTATA
* * * *
700608 TATATTATATATTTTGAAATTATTATA
1 TATATTATATATATTCAAATAACTATA
700635 TATATATATATATAT
1 TATAT-TATATATAT
700650 ATATATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 17 0.49
27 10 0.29
28 8 0.23
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (27 bp):
TATATTATATATATTCAAATAACTATA
Found at i:700636 original size:2 final size:2
Alignment explanation
Indices: 700631--700686 Score: 71
Period size: 2 Copynumber: 28.0 Consensus size: 2
700621 TTGAAATTAT
*
700631 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TCA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
700673 CTA TA TA -A TA TA TA
1 -TA TA TA TA TA TA TA
700687 AAAATGTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
1 2 0.04
2 43 0.90
3 3 0.06
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:703768 original size:22 final size:21
Alignment explanation
Indices: 703730--703774 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
703720 AGGAACGTGA
*
703730 CATAAAGTAAAAAAAATATGT
1 CATAAAGCAAAAAAAATATGT
* *
703751 CATAAGAGCAAAACAAATGTGT
1 CATAA-AGCAAAAAAAATATGT
703773 CA
1 CA
703775 CAAGGATAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.56, C:0.11, G:0.13, T:0.20
Consensus pattern (21 bp):
CATAAAGCAAAAAAAATATGT
Found at i:708082 original size:14 final size:14
Alignment explanation
Indices: 708030--708082 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
708020 AATAAATTAA
708030 TAATTTATTATTTTAT
1 TAATTT-TT-TTTTAT
* * *
708046 TAAATTTTATTATAC
1 T-AATTTTTTTTTAT
708061 TAATTTTTTTTTAT
1 TAATTTTTTTTTAT
708075 TAATTTTT
1 TAATTTTT
708083 GCAGTTATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
14 18 0.60
15 5 0.17
16 2 0.07
17 5 0.17
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (14 bp):
TAATTTTTTTTTAT
Found at i:708870 original size:21 final size:21
Alignment explanation
Indices: 708844--708889 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
708834 AATATGTCGA
* *
708844 GCTACTGATTATTGAAAAAGT
1 GCTACTGACTATTGAAAAAAT
708865 GCTACTGACTATTGAAAAAAT
1 GCTACTGACTATTGAAAAAAT
708886 GCTA
1 GCTA
708890 TCGACGGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (21 bp):
GCTACTGACTATTGAAAAAAT
Found at i:710420 original size:17 final size:18
Alignment explanation
Indices: 710398--710431 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
710388 TTCAAATTGT
710398 TTTTATTATTT-AGTTGC
1 TTTTATTATTTGAGTTGC
*
710415 TTTTATTTTTTGAGTTG
1 TTTTATTATTTGAGTTG
710432 TATATTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.68
Consensus pattern (18 bp):
TTTTATTATTTGAGTTGC
Found at i:714291 original size:21 final size:21
Alignment explanation
Indices: 714267--714306 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
714257 ACATTATTAT
* *
714267 TTCTACTGGTTTTGTTATTTG
1 TTCTACCGATTTTGTTATTTG
714288 TTCTACCGATTTTGTTATT
1 TTCTACCGATTTTGTTATT
714307 GTTGGACACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.60
Consensus pattern (21 bp):
TTCTACCGATTTTGTTATTTG
Found at i:714356 original size:21 final size:21
Alignment explanation
Indices: 714330--714374 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
714320 CCGGAAATGT
* *
714330 TAAAAACATTGATGTTTTAGG
1 TAAAAACAATAATGTTTTAGG
*
714351 TAAAAATAATAATGTTTTAGG
1 TAAAAACAATAATGTTTTAGG
714372 TAA
1 TAA
714375 TTTTTTATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (21 bp):
TAAAAACAATAATGTTTTAGG
Found at i:716072 original size:75 final size:74
Alignment explanation
Indices: 715949--716200 Score: 290
Period size: 75 Copynumber: 3.4 Consensus size: 74
715939 CTTAACCAGT
* ** * *
715949 TAAAATAAAATAGGCGCTACATATTTTGTTAAACTACCTA-TCGGTTTGTTTGAAGGTTATTAAT
1 TAAAATAAAATAGGCACTACATATTACGTTAAACTA-CTACT-GGTTTGTTTAAAGGTTACTAAT
*
716013 AATGTAAATGG
64 AATGTAAACGG
* * * *
716024 TAAAATAAAATATGCACTACCTATTACGTTAAAATACGTACTGGTTTGTTTAAATGTTACTAATA
1 TAAAATAAAATAGGCACTACATATTACGTTAAACTAC-TACTGGTTTGTTTAAAGGTTACTAATA
*
716089 ATGTAAACAG
65 ATGTAAACGG
* * * * * * *
716099 TTAAATTAAATAAGCACTACCTATTACGTTAAACTATCTACCGATTTATTTAAAGGTTACTAATA
1 TAAAATAAAATAGGCACTACATATTACGTTAAACTA-CTACTGGTTTGTTTAAAGGTTACTAATA
716164 ATGTAAACGG
65 ATGTAAACGG
*
716174 TAAAATAAAATAGGCGCTACATATTAC
1 TAAAATAAAATAGGCACTACATATTAC
716201 TAATAATGTA
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
74 1 0.01
75 146 0.98
76 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (74 bp):
TAAAATAAAATAGGCACTACATATTACGTTAAACTACTACTGGTTTGTTTAAAGGTTACTAATAA
TGTAAACGG
Found at i:718218 original size:24 final size:24
Alignment explanation
Indices: 718184--718243 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
718174 CATTCTACAA
718184 TGCATCGATGCATTCTTTAACAGG
1 TGCATCGATGCATTCTTTAACAGG
*
718208 TGCATCCATGCATTCTTTAACAGG
1 TGCATCGATGCATTCTTTAACAGG
718232 TGCATCGATGCA
1 TGCATCGATGCA
718244 CTACCATGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (24 bp):
TGCATCGATGCATTCTTTAACAGG
Found at i:718369 original size:63 final size:60
Alignment explanation
Indices: 718231--718370 Score: 140
Period size: 63 Copynumber: 2.2 Consensus size: 60
718221 TCTTTAACAG
*
718231 GTGCATCGATGCACTACCATGCATCGATACACAATTTACATTCGATGTTTCCATTTTAAGGG
1 GTGCATCGATGCACTACCATGCATCGATACACAATTTACA-TCGATGTTT-CATTTTAAGGA
* * * **
718293 GATGTATCGATGCACTCCTCATGCATCGATGCACCAATTGTAC-TCGATGTTT-ATTTATTTGAG
1 G-TGCATCGATGCACTAC-CATGCATCGATACA-CAATT-TACATCGATGTTTCATTT-TAAG-G
718356 A
60 A
718357 GTGCATCGATGCAC
1 GTGCATCGATGCAC
718371 ATTGAAGATG
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
62 5 0.08
63 28 0.43
64 24 0.37
65 5 0.08
66 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (60 bp):
GTGCATCGATGCACTACCATGCATCGATACACAATTTACATCGATGTTTCATTTTAAGGA
Found at i:719429 original size:100 final size:98
Alignment explanation
Indices: 719287--719472 Score: 300
Period size: 100 Copynumber: 1.9 Consensus size: 98
719277 TTTTCAATGC
*
719287 TCCATCACTTAAACTTTGGTAACATTTTAGGCGCTACCTAATATGTTGATAATATTAATAACAAA
1 TCCATCACTTAAACTTTAGTAACATTTTAGGCGCTACCTAATATGTTGATAATATTAATAACAAA
*
719352 ATAAATAATTAACCTATTTTGTTATCATCGGATT
66 ATAAATAATGAA-CTATTTTGTTATCATCGGATT
* *
719386 TCCATCAGCTTAAACTTTAGTAATATTTTAGGCGCTACCTAATATGTTGATAATATTGATAACAA
1 TCCATCA-CTTAAACTTTAGTAACATTTTAGGCGCTACCTAATATGTTGATAATATTAATAACAA
* *
719451 ATTAAGTAATGAACTATTTTGT
65 AATAAATAATGAACTATTTTGT
719473 AATTAACCAG
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
99 16 0.20
100 64 0.80
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (98 bp):
TCCATCACTTAAACTTTAGTAACATTTTAGGCGCTACCTAATATGTTGATAATATTAATAACAAA
ATAAATAATGAACTATTTTGTTATCATCGGATT
Found at i:725493 original size:14 final size:14
Alignment explanation
Indices: 725474--725511 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
725464 GCCTGAAAAA
725474 AATAAATAATAAGT
1 AATAAATAATAAGT
*
725488 AATAAATAAT-ATT
1 AATAAATAATAAGT
725501 AAT-AATAATAA
1 AATAAATAATAA
725512 TATTTTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 6 0.27
13 6 0.27
14 10 0.45
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AATAAATAATAAGT
Found at i:728040 original size:196 final size:197
Alignment explanation
Indices: 727381--728072 Score: 737
Period size: 196 Copynumber: 3.5 Consensus size: 197
727371 ACATGCATTT
* * * * * *
727381 AACCGGTATATTTATACCGGTAACATTGCAAATTTACCTATTGCATTATAATTATTGTTTCGTTG
1 AACCGGTATATGTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTTGTTTCGATG
*
727446 TTTTT-TGGATCGATACAATTTT-AATGTATC-ACACTTTATGTTTGCACCTCGTTGGGCATTCC
66 TTTTTGT-GATCGATACAATTTTAAATGTATCGACACTTTATGCTTGCACCTCGTTGGG-A----
* * * *
727508 TAATTCATTCTGGAAAAAAGTATCGACACAAAC-TATAAAGGTGTCGATACATTATTTAGACCTA
125 T--TTCATTATGGAAAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATTT-GACCTA
727572 TTTTCTCATAA
187 TTTTCTCATAA
* * * * *
727583 AACCGATAT-TTTATACCGGGTACATTGTAAATTTACCTATAACATTGTAATTTTTGTTTCGATG
1 AACCGGTATATGTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTTGTTTCGATG
* *
727647 TTTTTG-GATCGATACAATTTTAAATGT-TCGACA-TGTTATTCTTGCACCTCGTTGGGTTTTCA
66 TTTTTGTGATCGATACAATTTTAAATGTATCGACACT-TTATGCTTGCACCTCGTTGGGATTTCA
* *
727709 TTATGGACAAAATGTATCGACACAAA-TTACACAAGTGTCGATACTTTATTCTGACCTATTTTCT
130 TTATGGA-AAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATT-TGACCTATTTTCT
727773 CATAA
193 CATAA
* * * * **
727778 AACCGGTAAATGTAAACCGGTTACATTGTAAATTGATCTATTACATTATAATTATCAGTTTCGAT
1 AACCGGTATATGTATACCGGTTACATTGTAAATTTACCTATTACATTATAATT-TTTGTTTCGAT
* * * *
727843 GTTTTTGTGATCGATAAAATTTTAAATGTATCGACACTTTATGCGTGAACCT-GTTTGTGATTTC
65 GTTTTTGTGATCGATACAATTTTAAATGTATCGACACTTTATGCTTGCACCTCG-TTGGGATTTC
* * * *
727907 -TTTTGGAAAAAAATATCGACACAAACTTA-AAAAGTGTCGATACTTTATGTTGACCTGTTTTAT
129 ATTATGGAAAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTAT-TTGACCTATTTTCT
* *
727970 AAT-T
193 CATAA
* * **
727974 AACCGGTATATGTATACTGGTTACATTGTTAATTTAAATATTACATTATAATTTTTTGTTTCGAT
1 AACCGGTATATGTATACCGGTTACATTGTAAATTTACCTATTACATTATAA-TTTTTGTTTCGAT
* * *
728039 GTTTTTGGGGTCGATAC-TTTTTGAAAATGTATCG
65 GTTTTTGTGATCGATACAATTTT--AAATGTATCG
728073 TCACATATTC
Statistics
Matches: 416, Mismatches: 56, Indels: 41
0.81 0.11 0.08
Matches are distributed among these distances:
194 10 0.02
195 64 0.15
196 105 0.25
197 75 0.18
198 31 0.07
199 25 0.06
200 19 0.05
201 79 0.19
202 8 0.02
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (197 bp):
AACCGGTATATGTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTTGTTTCGATG
TTTTTGTGATCGATACAATTTTAAATGTATCGACACTTTATGCTTGCACCTCGTTGGGATTTCAT
TATGGAAAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATTTGACCTATTTTCTCAT
AA
Found at i:731008 original size:199 final size:200
Alignment explanation
Indices: 730575--732623 Score: 2887
Period size: 199 Copynumber: 10.2 Consensus size: 200
730565 AGACATTTGG
*
730575 TTATAATTATGGTTTTCGATTTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA-
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
*
730639 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTT-TTCGATTTGTGTCGATA
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
* * * * * ***
730703 CTTTTTGTACATCAGTTTTCTCAAAAA-CGAATATATTTAGACCGATTATATTTCTAATTTACCT
131 CTTTTTGTACACCTGTTTTCTCAAAAACCG-GTATATTTAGACCGTTTACATGAATAATTTACCT
730767 ATTACA
195 ATTACA
* * *
730773 TTATAATTATAGTATTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTA-
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
*
730837 GTGCACTTGGTTTTGAAATACATTATGGACAAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
* *
730902 CTTTTTGTACACCTGTTTTCTTAAAAACCGGTATATTTAGACCATTTACATGAATAATTTACCTA
131 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
730967 TTACA
196 TTACA
* ** * *
730972 TTATAATTATGTTTTTTTATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACAC-TTTTAT
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* *
731036 GTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCT-ATTTGTGTCGAT
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTT-TGATTTGTGTCGAT
* * * *
731100 ACTGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTG-CTAATTTACC
130 ACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACA-TGAATAATTTACC
731164 TATTACA
194 TATTACA
* * *
731171 TTATAATTATGGTTTTTGATGTTTTTGGGATCGACACTTGTTACAAATGTATCAACACTTTTTA-
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* * * * *
731235 GTGCACTTAGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCAATA
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
*
731300 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
131 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
731365 TTACA
196 TTACA
* * *
731370 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACAC-TTTTAT
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* * *
731434 TTGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCT-ATTTGTGTCGAT
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTT-TGATTTGTGTCGAT
* * * * ***
731498 ACTGTTTGTATACCTGTTTTCTC-AAAACCGGTATATTTAGACCGATTATATTTCTAATTTACCT
130 ACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCT
731562 ATTACA
195 ATTACA
731568 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA-
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* *
731632 GTGCACTTGGTTTTGAAATACATTTTAGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
* *
731697 CTTTTTTTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTACCTA
131 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
731762 TTACA
196 TTACA
* * * *
731767 TTATCATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACAC-TTTTAT
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* * *
731831 GTGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTCTTCT-ATTTGTGTCGAT
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTT-TGATTTGTGTCGAT
* * * * * ***
731895 ACTGTTTGTACGCCTGTTTTTCTCAAAAACTGGTATATTTAGACCGGTTATATTTCTAATTTACC
130 ACTTTTTGTACACCTG-TTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACC
731960 TATTACA
194 TATTACA
*
731967 TTATAATTATGGTTTTCGATGTTTTTGGGATCG--ACTTGTTACAAATGTATCGACACTTGTTAC
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC---TT--
* *
732030 AAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACAC
61 ---T-T-T----A-----T-GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACAC
* *
732095 TTGTTCGATTTGT-TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGT
111 TTGTTTGATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGT
732159 TTACATGAATAATTTACCTATTACA
176 TTACATGAATAATTTACCTATTACA
* *
732184 TTATAATTATGTTTTTCGATGTTTTTGGGGA-CGACACTTGTTTTAAATGTATCGACAC-TTTTA
1 TTATAATTATGGTTTTCGATGTTTTT-GGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
* * *
732247 TGTGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATCAACACTTGTTCGATTTGTGTCGAT
65 TGTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGAT
* * * * ***
732312 ACTGTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCT
130 ACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCT
732377 ATTACA
195 ATTACA
732383 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA-
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
* *
732447 GTGCACTTGGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTTAGATTTGTGTCGATA
66 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
* * *
732512 CTTTTTGTACACATGTTTTCTCAAAAACTGGTATATTTAGACCTTTTACATGAATAATTTACCTA
131 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
732577 TTACA
196 TTACA
* *
732582 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTT
1 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTT
732624 TTATTTGTGT
Statistics
Matches: 1659, Mismatches: 148, Indels: 87
0.88 0.08 0.05
Matches are distributed among these distances:
197 1 0.00
198 377 0.23
199 1002 0.60
200 94 0.06
202 1 0.00
204 1 0.00
207 1 0.00
208 2 0.00
209 2 0.00
210 1 0.00
213 1 0.00
215 1 0.00
217 77 0.05
218 24 0.01
219 74 0.04
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (200 bp):
TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAT
GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA
CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTA
TTACA
Found at i:731738 original size:397 final size:398
Alignment explanation
Indices: 730575--732626 Score: 3360
Period size: 397 Copynumber: 5.1 Consensus size: 398
730565 AGACATTTGG
* * * *
730575 TTATAATTATGGTTTTCGATTTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTT-TA
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTAT-
* * *
730639 GTGCACTTGGTTTTGAAATACATTATGGACCAAAAGTATCGACACTT-TTCGATTTGTGTCGATA
65 GTGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATA
* * * * *
730703 CTTTTTGTACATCAGTTTTCTCAAAAA-CGAATATATTTAGACCGATTATATTTCTAATTTACCT
130 CTGTTTGTACACCTGTTTTCTCAAAAACCG-GTATATTTAGACCGGTTATATTTCTAATTTACCT
* *
730767 ATTACATTATAATTATAGTATTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACT
194 ATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACT
* *
730832 TTTTAGTGCACTTGGTTTTGAAATACATTATGGACAAAAAGTATCGACACTTGTTTGATTTGTGT
259 TTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGT
*
730897 CGATACTTTTTGTACACCTGTTTTCTTAAAAACCGGTATATTTAGACCATTTACATGAATAATTT
324 CGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTT
730962 ACCTATTACA
389 ACCTATTACA
**
730972 TTATAATTATGTTTTTTTATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
* *
731037 TGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
66 TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
*
731102 TGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTAT
131 TGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTAT
* *
731167 TACATTATAATTATGGTTTTTGATGTTTTTGGGATCGACACTTGTTACAAATGTATCAACACTTT
196 TACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTT
* *
731232 TTAGTGCACTTAGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCA
261 TTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCG
* *
731297 ATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTAC
326 ATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTAC
731362 CTATTACA
391 CTATTACA
*
731370 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
731435 TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
66 TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
* *
731500 TGTTTGTATACCTGTTTTCTC-AAAACCGGTATATTTAGACCGATTATATTTCTAATTTACCTAT
131 TGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTAT
*
731564 TACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT
196 TACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTT
* * * *
731629 TTAGTGCACTTGGTTTTGAAATACATTTTAGACCAAAAGTATCGACACTTGTTTGATTTGTGTCG
261 TTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCG
*
731694 ATACTTTTTTTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTAC
326 ATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTAC
731759 CTATTACA
391 CTATTACA
*
731767 TTATCATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
*
731832 TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTCTTCTATTTGTGTCGATAC
66 TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
* *
731897 TGTTTGTACGCCTGTTTTTCTCAAAAACTGGTATATTTAGACCGGTTATATTTCTAATTTACCTA
131 TGTTTGTACACCTG-TTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTA
731962 TTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACTTGTTACAAATGTATCGACACTTGT
195 TTACATTATAATTATGGTTTTCGATG-TTTT----T-G----G--------G-ATCGACACTTGT
732027 TACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGA
241 TACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGA
*
732092 CACTTGTTCGATTTGT-TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGAC
306 CACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGAC
*
732156 CGTTTACATGAATAATTTACCTATTACA
371 CATTTACATGAATAATTTACCTATTACA
*
732184 TTATAATTATGTTTTTCGATGTTTTTGGGGA-CGACACTTGTTTTAAATGTATCGACACTTTTAT
1 TTATAATTATGTTTTTCGATG-TTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTAT
* * *
732248 GTGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATCAACACTTGTTCGATTTGTGTCGATA
65 GTGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATA
*
732313 CTGTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTA
130 CTGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTA
*
732378 TTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
195 TTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTT
* * *
732443 TTTAGTGCACTTGGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTTAGATTTGTGTC
260 TTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTC
* * *
732508 GATACTTTTTGTACACATGTTTTCTCAAAAACTGGTATATTTAGACCTTTTACATGAATAATTTA
325 GATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTA
732573 CCTATTACA
390 CCTATTACA
732582 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTA
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTA
732627 TTTGTGTCGA
Statistics
Matches: 1551, Mismatches: 77, Indels: 53
0.92 0.05 0.03
Matches are distributed among these distances:
397 569 0.37
398 528 0.34
399 68 0.04
400 4 0.00
404 1 0.00
405 1 0.00
406 1 0.00
409 1 0.00
410 1 0.00
411 1 0.00
415 4 0.00
416 75 0.05
417 201 0.13
418 96 0.06
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (398 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
TGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
TGTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTAT
TACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTT
TTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCG
ATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCATTTACATGAATAATTTAC
CTATTACA
Found at i:732026 original size:21 final size:21
Alignment explanation
Indices: 732000--732045 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
731990 TTTGGGATCG
732000 ACTTGTTACAAATGTATCGAC
1 ACTTGTTACAAATGTATCGAC
732021 ACTTGTTACAAATGTATCGAC
1 ACTTGTTACAAATGTATCGAC
732042 ACTT
1 ACTT
732046 TTTAGTGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (21 bp):
ACTTGTTACAAATGTATCGAC
Found at i:736099 original size:196 final size:199
Alignment explanation
Indices: 735615--736896 Score: 2112
Period size: 196 Copynumber: 6.5 Consensus size: 199
735605 TTTTCAATTT
** * * *
735615 AAACCGGTATATTTAGACCAATTATATTGTTAATTTACCTATTATATTATAATTATGATTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
735680 TTTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
735745 CATTCTGGACCAAAAGTATCGACACTTGCTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
735810 TCAA
196 TCAA
*
735814 AAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
** *
735879 TGTTTTTTAGATCGACAATTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * * *
735944 CATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA-TTTTTTTACA-CTG-TTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
736006 TCAA
196 TCAA
*
736010 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCAA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
736075 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
736140 CATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGATAC-TTTTGTACACC-GGTTT-
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
736202 TCAA
196 TCAA
* *
736206 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTGCATTATAATTATAGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* *
736271 TGTTTTTGGGATCGACACTTGTTACAAATGTATTGACAC-TTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
736335 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTTGATACTTTTTGTACACCGGTTTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
736400 TCAA
196 TCAA
* * *
736404 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCAA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
736469 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
*
736534 CATTCTGGACAAAAAGTATCGACACTTGTTCGA-TT-TGTCGATACTTTTTGTATACCATGTTTT
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACC-TGTTTT
736597 CTC-A
195 CTCAA
*
736601 AAA-CGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGG-TTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
736664 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * * *
736729 CATTCT-GACCAAAAGTATCGACACTTGTTTGA-TT-TGTCGGTACTTTTTTTACACCTGTTTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
736791 TCAA
196 TCAA
736795 AAACCGGTATA-TTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTAT-GTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
736858 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
736897 ATAAGTTTAC
Statistics
Matches: 1022, Mismatches: 50, Indels: 27
0.93 0.05 0.02
Matches are distributed among these distances:
193 10 0.01
194 136 0.13
195 150 0.15
196 349 0.34
197 34 0.03
198 123 0.12
199 220 0.22
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (199 bp):
AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
TCAA
Found at i:736500 original size:394 final size:394
Alignment explanation
Indices: 735615--736896 Score: 2104
Period size: 394 Copynumber: 3.3 Consensus size: 394
735605 TTTTCAATTT
* * * *
735615 AAACCGGTATATTTAGACCAATTATATTGTTAATTTACCTATTATATTATAATTATGATTTTCGA
1 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATG-TTTTCAA
*
735680 TTTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
65 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * * *
735745 CATTCTGGACCAAAAGTATCGACACTTGCTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
130 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCAGGTTT-
735810 TCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGGTTT
194 TCAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTAT-GTTT
** * *
735875 TCGATGTTTTTTAGATCGACAATTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGA
258 TCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGA
*
735940 AATACATTATGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGATA-TTTTTTTACA-CTG-
323 AATACATTCTGGACCAAAAGTATCGACACTTGTTTGATTTGTGT-GATACTTTTTTTACACCTGT
736002 TTTCTCAA
387 TTTCTCAA
*
736010 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCAA
1 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTAT-GTTTTCAA
736075 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
65 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
*
736140 CATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGATAC-TTTTGTACACC-GGTTTT
130 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCAGGTTTT
* *
736203 CAAAAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTGCATTATAATTATAGTTTT
195 CAAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTAT-GTTTT
* *
736268 CGATGTTTTTGGGATCGACACTTGTTACAAATGTATTGACAC-TTTTAGTGCACTTGGTTTTGAA
259 CGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGAA
* * * *
736332 ATACATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTTGATACTTTTTGTACACCGGTT
324 ATACATTCTGGACCAAAAGTATCGACACTTGTTTGATTTGTG-TGATACTTTTTTTACACCTGTT
736397 TTCTCAA
388 TTCTCAA
736404 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCAA
1 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTAT-GTTTTCAA
*
736469 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
65 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
736534 CATTCTGGACAAAAAGTATCGACACTTGTTCGA-TT-TGTCGATACTTTTTGTATACCATGTTTT
130 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCAGGTTTT
* *
736597 CTCAAAA-CGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGGTTT
195 C-AAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGTTTT
736661 CGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGAA
259 CGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGAA
736726 ATACATTCT-GACCAAAAGTATCGACACTTGTTTGATTTGTCG-G-TACTTTTTTTACACCTGTT
324 ATACATTCTGGACCAAAAGTATCGACACTTGTTTGATTTGT-GTGATACTTTTTTTACACCTGTT
736788 TTCTCAA
388 TTCTCAA
* *
736795 AAACCGGTATA-TTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGTTTTCGAT
1 AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATGTTTTCAAT
736859 GTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
66 GTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
736897 ATAAGTTTAC
Statistics
Matches: 835, Mismatches: 42, Indels: 26
0.92 0.05 0.03
Matches are distributed among these distances:
389 45 0.05
390 43 0.05
391 100 0.12
392 120 0.14
393 91 0.11
394 266 0.32
395 169 0.20
396 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (394 bp):
AAACCGGTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATGTTTTCAAT
GTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATAC
ATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCAGGTTTTC
AAAAACCGGTATATTTAGACCGGTTATATTTCTAATTTACCTATTACATTATAATTATGTTTTCG
ATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACGTTTTAGTGCACTTGGTTTTGAAAT
ACATTCTGGACCAAAAGTATCGACACTTGTTTGATTTGTGTGATACTTTTTTTACACCTGTTTTC
TCAA
Found at i:737288 original size:18 final size:19
Alignment explanation
Indices: 737241--737289 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
737231 TTACATTTAC
*
737241 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
737260 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
737279 ATAC-AAATTAA
1 ATACAAAATTAA
737290 CCATGCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:738753 original size:18 final size:18
Alignment explanation
Indices: 738730--738765 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
738720 TTCTCCTCAT
*
738730 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTCTCTTC
738748 TTCCTCCATCTTCTCTTC
1 TTCCTCCATCTTCTCTTC
738766 AAATTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.42, G:0.00, T:0.53
Consensus pattern (18 bp):
TTCCTCCATCTTCTCTTC
Found at i:740723 original size:19 final size:20
Alignment explanation
Indices: 740676--740724 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
740666 ACATTATACA
740676 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
*
740695 ACATAT-AATATCATTTT-T
1 ACCTATAAATATCATTTTCT
740713 ACCTATAAATAT
1 ACCTATAAATAT
740725 TAACTAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:741691 original size:182 final size:182
Alignment explanation
Indices: 741379--742743 Score: 1414
Period size: 182 Copynumber: 7.6 Consensus size: 182
741369 TACGCGTACT
* * * * * *
741379 TATTAAAGTATCGACACATTCAACATATTCGGTATCTATTTACCGGTTTTGTCA-TTTTGAGAAC
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACT-TTTTCCGGTTTTGTCATTTTTGAGACC
* * * *
741443 GGTTTTATCATATTTTTACATGTTATATTGTTTTGGATCGATACATTTTCATAAAGGGTCGACAC
65 AGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACAC
* * * *
741508 TTTTTAAGCGTTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 TTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
* *
741561 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCTGGTTTTGTCATTTTTGAGACCT
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCA
* * * *
741626 GTTTTATCATATTTTTACCTGTTATATTGGTAAGGATCGATACATTTTAATAAAGTGTTGACACT
66 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
741691 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
131 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
* * * *
741743 TATTAAATTATCGACACTTTCAATATATCTGGTAACTTTTTCCGTTTTTTTCATTTTTGAGACCA
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCA
741808 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
66 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
* ** * * * *
741873 TTTT-A--G-TTTAA----TT-TC--AGAAAGTGTC-GATACT-T--ATATTAA
131 TTTTAAGCGCTATAACTTCTTCTCTTTTAAA-T-TCAAAAAGTATCGATACTAA
* * * * * * ** * ** * *
741912 -ATT--ATTGA-C-AC-TTTTAACATATCT-GGTAT-CGTTTTACTAGTTTTGTCAATTTTGGGA
1 TATTAAATT-ATCGACACTTTCA-ACATATCCG-GTAACTTTTTCCGGTTTTGTCATTTTTGAGA
** * * ** *
741969 CATGTTTTATCATATTTTTACCTGTTATATTGTTGTGGATCGATATATTTTTTTAAAGTATCGAC
63 CCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGAC
* * * * *
742034 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTA
128 ACTTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
* * * * *
742089 TATTAAATTATTGACACTTTCAATATATCCGGTAACGTTTTACTGGTTTTGTCAATTTTGAGACC
1 TATTAAATTATCGACACTTTCAACATATCCGGTAAC-TTTTTCCGGTTTTGTCATTTTTGAGACC
* * *
742154 TGTTTTATCATATTTTTACCTGTTATATTGTTATGGATTGATACATTTTCATAAATTGTCGACAC
65 AGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACAC
* ** * * * *
742219 TTTTTAAGCGCAATATTTTTTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 TTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
* * *
742272 TATTAAATTATCGACACTTTTAACATATCTGGTAACTTTTT-CGGTTCTT-TTATTTTTGAGA-C
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTT-TTGTCATTTTTGAGACC
* * *
742334 ATGTTTTATCATATTTTTACCTGTTATATTGGTAAGGATCGATATATTTTCATAAAGTGTCGACA
65 A-GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACA
* * * *
742399 CTTTTTAGGCGTTATAA---CTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
129 CTTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
*
742450 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCA
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCA
* * * ** *
742515 ATTTTATCATATTTTTACCTGATATATTGTTGTGGATCGAT--ATTGTTTTTAAAGTATCGACAC
66 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATT-TTCATAAAGTGTCGACAC
* * * * * *
742578 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATATTTA
130 TTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
* * * * *
742631 TTTTAAATTATCGACAC--TCGACACATATCCGATAGCGTTTTACCGGTTTTGTCA-TTTTGGGA
1 TATTAAATTATCGACACTTTC-A-ACATATCCGGTAAC-TTTTTCCGGTTTTGTCATTTTTGAGA
* * * * * * *
742693 CCGGTTTTTTCATATTTGTACCTGTAATATTGCTATGGAGCGATCCATTTT
63 CCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTT
742744 TCATTTGATA
Statistics
Matches: 996, Mismatches: 143, Indels: 88
0.81 0.12 0.07
Matches are distributed among these distances:
164 88 0.09
165 8 0.01
166 4 0.00
167 2 0.00
168 7 0.01
169 6 0.01
171 4 0.00
172 6 0.01
173 8 0.01
174 7 0.01
175 4 0.00
177 8 0.01
178 108 0.11
179 56 0.06
180 7 0.01
181 208 0.21
182 301 0.30
183 164 0.16
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (182 bp):
TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCA
GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTATCGATACTAA
Found at i:742010 original size:164 final size:163
Alignment explanation
Indices: 741716--742038 Score: 443
Period size: 164 Copynumber: 2.0 Consensus size: 163
741706 CTTCTTCTCT
*
741716 TTTAAATTCAAAAAGTATCGATACTAATATTAAATTATCGACACTTTCAATATATCTGGTAACTT
1 TTTAAATTCAAAAAGTATCGATACTAATATTAAATTATCGACACTTTCAACATATCTGGTAACTT
* * * *
741781 TTTCCGTTTTTTTCATTTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATC
66 TTACAGTTTTTGTCAATTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATC
*
741846 GATACATTTTCATAAAGTGTCGACACTTTTTAG
131 GATACATTTTCATAAAGTATCGACACTTTTTAG
* * * * * * *
741879 TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATTGACACTTTTAACATATCTGGTATCGT
1 TTTAAATTCAAAAAGTATCGATACTAATATTAAATTATCGACACTTTCAACATATCTGGTAAC-T
* *
741944 TTTACTAG-TTTTGTCAATTTTGGGA-CATGTTTTATCATATTTTTACCTGTTATATTGTTGTGG
65 TTTAC-AGTTTTTGTCAATTTTGAGACCA-GTTTTATCATATTTTTACCTGTTATATTGTTATGG
* **
742007 ATCGATATATTTTTTTAAAGTATCGACACTTT
128 ATCGATACATTTTCATAAAGTATCGACACTTT
742039 ATAGGCGCTA
Statistics
Matches: 139, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
163 57 0.41
164 81 0.58
165 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (163 bp):
TTTAAATTCAAAAAGTATCGATACTAATATTAAATTATCGACACTTTCAACATATCTGGTAACTT
TTACAGTTTTTGTCAATTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATC
GATACATTTTCATAAAGTATCGACACTTTTTAG
Found at i:742218 original size:183 final size:183
Alignment explanation
Indices: 741879--742736 Score: 1074
Period size: 183 Copynumber: 4.7 Consensus size: 183
741869 CACTTTTTAG
* * * * *
741879 TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATTGACACTTTTAACATATCTGGTATCGT
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
** * * *
741944 TTTACTAGTTTTGTCAATTTTGGGACATGTTTTATCATATTTTTACCTGTTATATTGTTGTGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
**
742009 CGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
131 CGATATATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * *
742062 TTTAAATTCAGAAAGTTTCGATACTTATATTAAATTATTGACACTTTCAATATATCCGGTAACGT
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
*
742127 TTTACTGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* * * * * * * ** *
742192 TGATACATTTTCATAAATTGTCGACACTTTTTAAGCGCAATATTTTTTTCTCT
131 CGATATATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* *
742245 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTTAACATATCTGGTAAC-T
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * * * * *
742309 TTT-TCGGTTCTT-TTATTTTTGAGACATGTTTTATCATATTTTTACCTGTTATATTGGTAAGGA
66 TTTACCGGTT-TTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
* * *
742372 TCGATATATTTTCATAAAGTGTCGACACTTTTTAGGCGTTATAA---CTTCTCT
130 TCGATATATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* *
742423 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATATATCCGGTAAC-T
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * ** * *
742487 TTTTCCGGTTTTGTCATTTTTGAGACCAATTTTATCATATTTTTACCTGATATATTGTTGTGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
*
742552 CGATAT-TGTTT-TTAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
131 CGATATAT-TTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * * * *
742604 TTTAAATTCAGAAAGTTTCGATATTTATTTTAAATTATCGACAC--TCGACACATATCCGATAGC
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTC-A-ACATATCCGGTAAC
* * * * * *
742667 GTTTTACCGGTTTTGTC-ATTTTGGGACCGGTTTTTTCATATTTGTACCTGTAATATTGCTATGG
64 GTTTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGG
*
742731 AGCGAT
129 ATCGAT
742737 CCATTTTTCA
Statistics
Matches: 587, Mismatches: 78, Indels: 22
0.85 0.11 0.03
Matches are distributed among these distances:
178 99 0.17
179 60 0.10
180 1 0.00
181 187 0.32
182 21 0.04
183 219 0.37
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (183 bp):
TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
CGATATATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
Found at i:742697 original size:20 final size:21
Alignment explanation
Indices: 742672--742710 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
742662 ATAGCGTTTT
742672 ACCGGTTTTGTCAT-TTTGGG
1 ACCGGTTTTGTCATATTTGGG
*
742692 ACCGGTTTTTTCATATTTG
1 ACCGGTTTTGTCATATTTG
742711 TACCTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.49
Consensus pattern (21 bp):
ACCGGTTTTGTCATATTTGGG
Found at i:744696 original size:34 final size:34
Alignment explanation
Indices: 744657--744722 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
744647 ATACCCGAAC
* * *
744657 TAAAATTAATCCGACTAAAACCCAAACTGAAAGG
1 TAAAATTAACCCAACCAAAACCCAAACTGAAAGG
* *
744691 TAAAATTAACCCAACCATAACCTAAACTGAAA
1 TAAAATTAACCCAACCAAAACCCAAACTGAAA
744723 TTGTTTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.08, T:0.18
Consensus pattern (34 bp):
TAAAATTAACCCAACCAAAACCCAAACTGAAAGG
Found at i:744818 original size:66 final size:63
Alignment explanation
Indices: 744746--744872 Score: 193
Period size: 66 Copynumber: 2.0 Consensus size: 63
744736 TATTAATTTC
744746 AGCTTCA-CCTGTTACAATTATTATGATTTCATCCCTATTATTTAATTTAATTAATTTTCAATTT
1 AGCTTCACCCT-TTACAATTATTATGATTTCAT-CCTA-TATTTAA-TTAATTAATTTTCAATTT
744810 TT
62 TT
* *
744812 AGCTTCACCCTTTACAATTGTTTTGATTTCATCCTATATTTAATTAATTAATTTTCAATTT
1 AGCTTCACCCTTTACAATTATTATGATTTCATCCTATATTTAATTAATTAATTTTCAATTT
744873 ATGTTTGTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
63 18 0.31
64 7 0.12
65 4 0.07
66 26 0.45
67 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.51
Consensus pattern (63 bp):
AGCTTCACCCTTTACAATTATTATGATTTCATCCTATATTTAATTAATTAATTTTCAATTTTT
Found at i:744982 original size:140 final size:142
Alignment explanation
Indices: 744814--745082 Score: 465
Period size: 142 Copynumber: 1.9 Consensus size: 142
744804 CAATTTTTAG
*
744814 CTTCACCCTTTACAATTGTTTTGATTTCATCCT-ATATTTAA-TTAATTAATTTTCAA-TTTATG
1 CTTCACCCTTTACAATTGTTTTGATTTCATCATGATATTTAATTTAATTAATTTTCAATTTTATG
*
744876 TTTGTTCAATTTAATCCTTAAAGTTATTCTTTTATCAAAATTGACTCATAATTATTTTTATTTTT
66 TTTATTCAATTT-ATCCTTAAAGTTATTCTTTTATCAAAATTGACTCATAATTATTTTTATTTTT
744941 TATGATTTGGAGT
130 TATGATTTGGAGT
*
744954 CTTCA-CCTGTTACAATTGTTTTGATTTCATCATGTTATTTAATTTAATTAATTTTCAATTTTAT
1 CTTCACCCT-TTACAATTGTTTTGATTTCATCATGATATTTAATTTAATTAATTTTCAATTTTAT
745018 GTTTATTCAATTTATCCTTAAAGTTATTCTTTTATCAAAATTGACTCATAATTATTTTTATTTTT
65 GTTTATTCAATTTATCCTTAAAGTTATTCTTTTATCAAAATTGACTCATAATTATTTTTATTTTT
745083 ATTTATAATT
Statistics
Matches: 122, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
139 3 0.02
140 28 0.23
141 7 0.06
142 67 0.55
143 17 0.14
ACGTcount: A:0.28, C:0.12, G:0.06, T:0.54
Consensus pattern (142 bp):
CTTCACCCTTTACAATTGTTTTGATTTCATCATGATATTTAATTTAATTAATTTTCAATTTTATG
TTTATTCAATTTATCCTTAAAGTTATTCTTTTATCAAAATTGACTCATAATTATTTTTATTTTTT
ATGATTTGGAGT
Found at i:745380 original size:93 final size:93
Alignment explanation
Indices: 745221--745406 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
745211 CTTATACAAT
745221 TATAAAATAAGTCCATCAGTATCCAATAAGATCCTACTTAAATTTTAAGTATCAATGATATAACC
1 TATAAAATAAGTCCATCAGTATCCAATAAGATCCTACTTAAATTTTAAGTATCAATGATATAACC
745286 CAAGATCCGCCATGAAATTTGTCCAAAC
66 CAAGATCCGCCATGAAATTTGTCCAAAC
745314 TATAAAATAAGTCCATCAGTATCCAATAAGATCCTACTTAAATTTTAAGTATCAATGATATAACC
1 TATAAAATAAGTCCATCAGTATCCAATAAGATCCTACTTAAATTTTAAGTATCAATGATATAACC
745379 CAAGATCCGCCATGAAATTTGTCCAAAC
66 CAAGATCCGCCATGAAATTTGTCCAAAC
745407 CTACTGAAAT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (93 bp):
TATAAAATAAGTCCATCAGTATCCAATAAGATCCTACTTAAATTTTAAGTATCAATGATATAACC
CAAGATCCGCCATGAAATTTGTCCAAAC
Found at i:745429 original size:58 final size:58
Alignment explanation
Indices: 745365--745480 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
745355 ATTTTAAGTA
745365 TCAATGATATAACCCAAGATCCGCCATGAAATTTGTCCAAACCTACTGAAATCGATCC
1 TCAATGATATAACCCAAGATCCGCCATGAAATTTGTCCAAACCTACTGAAATCGATCC
745423 TCAATGATATAACCCAAGATCCGCCATGAAATTTGTCCAAACCTACTGAAATCGATCC
1 TCAATGATATAACCCAAGATCCGCCATGAAATTTGTCCAAACCTACTGAAATCGATCC
745481 GAATTAAAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (58 bp):
TCAATGATATAACCCAAGATCCGCCATGAAATTTGTCCAAACCTACTGAAATCGATCC
Found at i:745516 original size:13 final size:13
Alignment explanation
Indices: 745498--745524 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
745488 AATGAACCGA
745498 CTTAAAATTGATC
1 CTTAAAATTGATC
745511 CTTAAAATTGATC
1 CTTAAAATTGATC
745524 C
1 C
745525 GAACTAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (13 bp):
CTTAAAATTGATC
Found at i:746858 original size:66 final size:65
Alignment explanation
Indices: 746788--746934 Score: 161
Period size: 66 Copynumber: 2.2 Consensus size: 65
746778 CACAGTCTTT
* * * * * *
746788 ATACTCAGATGCCTTCCCTGCTACACTATCCTTTGCTT-CTTTCGCTTTCTGAGATGCATAATCT
1 ATACTCGGAAGCCTTCCC-GCTACACAATCCTTCGCTTCCTTT-GCCTTCTGAGACGCATAATCT
746852 CC
64 CC
* * ** *
746854 ATACTCGGAAGCTTTTCCCGTTACTGAATCCTTCGTTTCCTTTGCCTTCTGAGACGCATAATCTC
1 ATACTCGGAAGC-CTTCCCGCTACACAATCCTTCGCTTCCTTTGCCTTCTGAGACGCATAATCTC
746919 C
65 C
746920 ATACTCGGAAGCCTT
1 ATACTCGGAAGCCTT
746935 TTGCTTAGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
65 2 0.03
66 56 0.84
67 9 0.13
ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36
Consensus pattern (65 bp):
ATACTCGGAAGCCTTCCCGCTACACAATCCTTCGCTTCCTTTGCCTTCTGAGACGCATAATCTCC
Found at i:748074 original size:58 final size:58
Alignment explanation
Indices: 747964--748076 Score: 131
Period size: 58 Copynumber: 1.9 Consensus size: 58
747954 TCGATACCAA
* * * *
747964 AATATTTTTATTTTTATTTTTCTTGCAAATTCATCATTTTATGATTAGATCAATATCAG
1 AATATTTTTATTTTTATTTTTCATG-AAATTCATCACTTTATGATAAAATCAATATCAG
* *
748023 AATATTTTT-TTTTTATTTCTCTCATG-AATTCATCCCTTTGTGATAAAATCAATA
1 AATATTTTTATTTTTATTT-T-TCATGAAATTCATCACTTTATGATAAAATCAATA
748077 CCAGCATGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
58 32 0.70
59 10 0.22
60 4 0.09
ACGTcount: A:0.30, C:0.12, G:0.06, T:0.51
Consensus pattern (58 bp):
AATATTTTTATTTTTATTTTTCATGAAATTCATCACTTTATGATAAAATCAATATCAG
Found at i:750048 original size:23 final size:24
Alignment explanation
Indices: 750021--750070 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
750011 AAAATTTTCT
750021 TCATCATTTTTTGCATCAAA-TTG
1 TCATCATTTTTTGCATCAAATTTG
750044 TCATCATTTTTTGCATCAAATTTG
1 TCATCATTTTTTGCATCAAATTTG
750068 TCA
1 TCA
750071 AGATTATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.48
Consensus pattern (24 bp):
TCATCATTTTTTGCATCAAATTTG
Found at i:754115 original size:21 final size:21
Alignment explanation
Indices: 754089--754134 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
754079 ATAATGTCCA
754089 TAAGGACCACATATCATTCCT
1 TAAGGACCACATATCATTCCT
754110 TAAGGACCACATATCATTCCT
1 TAAGGACCACATATCATTCCT
754131 TAAG
1 TAAG
754135 AATCATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (21 bp):
TAAGGACCACATATCATTCCT
Found at i:755657 original size:19 final size:19
Alignment explanation
Indices: 755633--755683 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
755623 TATTATTGGG
755633 ATGCATCGATGCATGCCTT
1 ATGCATCGATGCATGCCTT
755652 ATGCATCGATGCATGCCTT
1 ATGCATCGATGCATGCCTT
755671 ATGCATCGATGCA
1 ATGCATCGATGCA
755684 CTAATTGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (19 bp):
ATGCATCGATGCATGCCTT
Found at i:766661 original size:22 final size:23
Alignment explanation
Indices: 766610--766661 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
766600 CTTGAAAATG
*
766610 AAAAAG-ATAAAAAAAGAACAAA
1 AAAAAGAACAAAAAAAGAACAAA
766632 AAAAAGAACAAAAAAAGAA-AAA
1 AAAAAGAACAAAAAAAGAACAAA
766654 AAAAAGAA
1 AAAAAGAA
766662 AAGGAGGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.85, C:0.04, G:0.10, T:0.02
Consensus pattern (23 bp):
AAAAAGAACAAAAAAAGAACAAA
Found at i:766662 original size:11 final size:11
Alignment explanation
Indices: 766618--766663 Score: 74
Period size: 11 Copynumber: 4.1 Consensus size: 11
766608 TGAAAAAGAT
766618 AAAAAAAGAACA
1 AAAAAAAGAA-A
*
766630 AAAAAAAGAAC
1 AAAAAAAGAAA
766641 AAAAAAAGAAA
1 AAAAAAAGAAA
766652 AAAAAAAGAAA
1 AAAAAAAGAAA
766663 A
1 A
766664 GGAGGGTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.87, C:0.04, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:767742 original size:37 final size:37
Alignment explanation
Indices: 767692--767770 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
767682 ATTGAAGATA
*
767692 TTGAAGCATGAAGATGAGAATGACTAGTTTGGTGATC
1 TTGAAGCATGAAGACGAGAATGACTAGTTTGGTGATC
*
767729 TTGAAGCATGAAGACGAGGATGACTAGTTTGGTGATC
1 TTGAAGCATGAAGACGAGAATGACTAGTTTGGTGATC
767766 TTGAA
1 TTGAA
767771 AAGATTGATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (37 bp):
TTGAAGCATGAAGACGAGAATGACTAGTTTGGTGATC
Found at i:768088 original size:54 final size:54
Alignment explanation
Indices: 767989--768539 Score: 647
Period size: 54 Copynumber: 9.9 Consensus size: 54
767979 GTGAAGCAGA
** * ***
767989 AGAAGATTATTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGCTTGC
1 AGAAGATCGTTCGAGTTC-CTACTCCCT-AAAGAAAGAGGGAGCGAACCCGAAAGC
*
768045 AGAAGATCGTTCGAGTTCTTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
*
768099 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
768153 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
* * *
768207 ATAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGATGGAGCGAACCCGTAAGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
* *
768261 AGAAAATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGG
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
* * *
768315 AGAAGATTGTTCGAGTTCTTACTCCCTAAAGAAAGAGGGAGCGAACCTGAAAGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
* * * *
768369 AGAAGATCGTTTGAGTTCCTACACCCTAATTCCTACTCCCTAAAGAAAGAGGGAGTGAACCCGTA
1 AGAAGATCGTTCGAGTTCCTACTCCCTAA-----A------GAA---AGAGGGAGCGAACCCG-A
768434 AA-C
51 AAGC
* * * * *
768437 AAAAGATCGTTCGAGTTCATACTCCCTAAAGAAAGAGGGAGCGAATCCGTAGGC
1 AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
* * * * * *
768491 AAAAGAT-TTTCGAGTTCCATACTCCTTAGAGAAAGAAGGATCGAACCCG
1 AGAAGATCGTTCGAGTTCC-TACTCCCTAAAGAAAGAGGGAGCGAACCCG
768540 TAAGAAGATA
Statistics
Matches: 433, Mismatches: 45, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
53 10 0.02
54 350 0.81
55 8 0.02
56 16 0.04
57 2 0.00
59 1 0.00
63 1 0.00
65 2 0.00
68 40 0.09
69 3 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
AGAAGATCGTTCGAGTTCCTACTCCCTAAAGAAAGAGGGAGCGAACCCGAAAGC
Found at i:768419 original size:68 final size:68
Alignment explanation
Indices: 768334--768465 Score: 194
Period size: 68 Copynumber: 1.9 Consensus size: 68
768324 TTCGAGTTCT
* * * *
768334 TACTCCCTAAAGAAAGAGGGAGCGAACCTG-AAAGCAGAAGATCGTTTGAGTTCCTACACCCTAA
1 TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAA-CAAAAGATCGTTCGAGTTCATACACCCTAA
768398 TTCC
65 TTCC
* *
768402 TACTCCCTAAAGAAAGAGGGAGTGAACCCGTAAACAAAAGATCGTTCGAGTTCATACTCCCTAA
1 TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAACAAAAGATCGTTCGAGTTCATACACCCTAA
768466 AGAAAGAGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
68 54 0.95
69 3 0.05
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (68 bp):
TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAACAAAAGATCGTTCGAGTTCATACACCCTAAT
TCC
Found at i:768541 original size:54 final size:52
Alignment explanation
Indices: 768398--768565 Score: 173
Period size: 54 Copynumber: 3.2 Consensus size: 52
768388 TACACCCTAA
*
768398 TTCC-TACTCCCTAAAGAAAGAGGGAGT-GAACCCGTAAACAAAAGATCGTTCGAG
1 TTCCATACTCCCTAAAGAAAGAGGGA-TCGAACCCGT--ACAAAAGAT-ATTCGAG
* * *
768452 TT-CATACTCCCTAAAGAAAGAGGGAGCGAATCCGTAGGCAAAAGATTTTCGAG
1 TTCCATACTCCCTAAAGAAAGAGGGATCGAACCCGTA--CAAAAGATATTCGAG
* * * *
768505 TTCCATACTCCTTAGAGAAAGAAGGATCGAACCCGTA-AGAAGATATTCGAG
1 TTCCATACTCCCTAAAGAAAGAGGGATCGAACCCGTACAAAAGATATTCGAG
*
768556 TTCTATACTC
1 TTCCATACTC
768566 TCTGAAGGAA
Statistics
Matches: 98, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
51 21 0.21
52 1 0.01
53 9 0.09
54 67 0.68
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (52 bp):
TTCCATACTCCCTAAAGAAAGAGGGATCGAACCCGTACAAAAGATATTCGAG
Found at i:768610 original size:55 final size:55
Alignment explanation
Indices: 768550--768744 Score: 250
Period size: 55 Copynumber: 3.5 Consensus size: 55
768540 TAAGAAGATA
* * *
768550 TTCGAGT-TCTATACTCTCTGAAGGAATAGGGAGCAGACATGATTGTTGAAGATTG
1 TTCGAGTCTC-ATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTGAAGATTG
* * *
768605 TTCGAGTCTTATACTCTCTGAAGAAATAAGGAGCAAACACGATTGTTGAAGATTA
1 TTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTGAAGATTG
* * * *
768660 TTCGAGCCTCATACTCTCTGAAGAAATAGGGAGCAAATACGTTTATTGAAGATTG
1 TTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTGAAGATTG
* *
768715 TTCCGA-TCTCATACCCTCTGAAGGAATAGG
1 TT-CGAGTCTCATACTCTCTGAAGAAATAGG
768745 AGTGAGCATG
Statistics
Matches: 122, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
55 118 0.97
56 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (55 bp):
TTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTGAAGATTG
Found at i:768940 original size:3 final size:3
Alignment explanation
Indices: 768932--768970 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
768922 TTGTTCGGGA
768932 TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
768971 ATAATAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:768959 original size:8 final size:9
Alignment explanation
Indices: 768932--768970 Score: 64
Period size: 8 Copynumber: 4.6 Consensus size: 9
768922 TTGTTCGGGA
768932 TATTATTAT
1 TATTATTAT
768941 TATTATTAT
1 TATTATTAT
768950 TATT-TTAT
1 TATTATTAT
768958 TATT-TTAT
1 TATTATTAT
768966 TATTA
1 TATTA
768971 ATAATAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 16 0.55
9 13 0.45
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TATTATTAT
Found at i:772888 original size:89 final size:90
Alignment explanation
Indices: 772788--772953 Score: 325
Period size: 89 Copynumber: 1.9 Consensus size: 90
772778 ATTTTTTGTT
772788 TTATGTCTATTTTATTTTGGAGTTATTGCATTCATCTTCATGTCATTCAAATGTGTTAA-TTGCA
1 TTATGTCTATTTTATTTTGGAGTTATTGCATTCATCTTCATGTCATTCAAATGTGTTAATTTGCA
772852 AGTGATTGACTATTTTCATTGTTTC
66 AGTGATTGACTATTTTCATTGTTTC
772877 TTATGTCTATTTTATTTTGGAGTTATTGCATTCATCTTCATGTCATTCAAATGTGTTAATTTGCA
1 TTATGTCTATTTTATTTTGGAGTTATTGCATTCATCTTCATGTCATTCAAATGTGTTAATTTGCA
772942 AGTGATTGACTA
66 AGTGATTGACTA
772954 ATAAGAAGGT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 59 0.78
90 17 0.22
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.49
Consensus pattern (90 bp):
TTATGTCTATTTTATTTTGGAGTTATTGCATTCATCTTCATGTCATTCAAATGTGTTAATTTGCA
AGTGATTGACTATTTTCATTGTTTC
Found at i:773481 original size:6 final size:6
Alignment explanation
Indices: 773470--773512 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
773460 ATTAACACCT
773470 TTTGCA TTTGCA TTTGCA TTTGGCA TTTGCA TTTGCA -TTGCA T
1 TTTGCA TTTGCA TTTGCA TTT-GCA TTTGCA TTTGCA TTTGCA T
773513 GTATTTGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.14
6 24 0.69
7 6 0.17
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.49
Consensus pattern (6 bp):
TTTGCA
Found at i:775599 original size:6 final size:6
Alignment explanation
Indices: 775588--775614 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
775578 TGAAAGAATG
775588 AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA
775615 ATTTGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:775658 original size:15 final size:16
Alignment explanation
Indices: 775626--775658 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
775616 TTTGAAAATG
*
775626 AAAAAAAGGAAAATAA
1 AAAAAAAGGAAAAGAA
775642 AAAAAAAGG-AAAGAA
1 AAAAAAAGGAAAAGAA
775657 AA
1 AA
775659 TTCACCCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAAAAGGAAAAGAA
Found at i:776864 original size:115 final size:116
Alignment explanation
Indices: 776570--776885 Score: 348
Period size: 115 Copynumber: 2.7 Consensus size: 116
776560 ATTGGAGAAA
* * * * * * * *
776570 AAGATAAGCGGTGCTAGAACATGAAGCATTCTACGATCTTGAAGCATATGATCCAAGAGGTCAGA
1 AAGATAAGCGATGCCAGAACATGAAGCATTCCATGATCTTGAAGCAGATGGTCTAAGAGATCAG-
*
776635 ATGGATGAAGGAAGAAATTGTAATATTTCCTTGTGATGTTATCAGTAACCCGTCAGG
65 A---ATGAAGGAAGAAATTGTAATATTTCCTTGTGATG-T-TCAGTAACCCATCAGG
* * *
776692 AAGAATACA-CGATGACCAGAATATGAAGCATTCCATGATCTTGAAACAGATAGTCTAAGAGATC
1 AAG-ATA-AGCGATG-CCAGAACATGAAGCATTCCATGATCTTGAAGCAGATGGTCTAAGAGATC
* * *
776756 AGAATGAAGGAATAAATTGTAATATTTCCTTGTGATG-TCAGTAACCTATCCGG
63 AGAATGAAGGAAGAAATTGTAATATTTCCTTGTGATGTTCAGTAACCCATCAGG
* * * *
776809 AAGATAAGCGATGCCAGAACATGAAGCATTCCGTGATCGTGTAGCAGATGGTCTAAGAAATCAGA
1 AAGATAAGCGATGCCAGAACATGAAGCATTCCATGATCTTGAAGCAGATGGTCTAAGAGATCAGA
* *
776874 ATGGATGAAGAA
66 ATGAAGGAAGAA
776886 CACTTTCTTG
Statistics
Matches: 165, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
115 55 0.33
116 8 0.05
117 16 0.10
120 33 0.20
122 3 0.02
123 8 0.05
124 42 0.25
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (116 bp):
AAGATAAGCGATGCCAGAACATGAAGCATTCCATGATCTTGAAGCAGATGGTCTAAGAGATCAGA
ATGAAGGAAGAAATTGTAATATTTCCTTGTGATGTTCAGTAACCCATCAGG
Found at i:777316 original size:125 final size:125
Alignment explanation
Indices: 777091--777459 Score: 542
Period size: 125 Copynumber: 3.0 Consensus size: 125
777081 AAGTTATGAT
* * *
777091 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACGAGATTCAGATCAAGGAGGCATAAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCATGAA
* *
777156 GAATGAGCCTTACAATTTGAGGTGATGGGGGATTTTGAAGGCCCGTACCAGTATAATACA
66 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGACA
* * * *
777216 GTGTTGGGGTACGACTAAACCCACATCATGTTGAGATGACAACATTCAGACCAAGGAGGCATGAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCATGAA
* * *
777281 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGTCCCATACCAGTATAAGATA
66 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGACA
* * * * *
777341 ATATTGGGGCATGACTGAACCCACATCATGTCGAGATGACAAGATTCAGACCGAGAAGGCATTG-
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCA-TGA
* * *
777405 AGAATAAGCCTTACGATTTGAGGTGTTGGGGCATTTTGAAGGCCCGTACCAGTAT
65 AGAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTAT
777460 GAGATATATT
Statistics
Matches: 217, Mismatches: 26, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
125 215 0.99
126 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (125 bp):
ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCATGAA
GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGACA
Found at i:778799 original size:34 final size:34
Alignment explanation
Indices: 778616--779768 Score: 1662
Period size: 34 Copynumber: 33.8 Consensus size: 34
778606 AAGTTAATCC
*
778616 TAAGCCTTCACCAG-AGAATAGTGAAGCAAACCATCT
1 TAAGCCTTCA-CAGAAGAGTAGTGAAGC--ACCATCT
* *
778652 GAAGCCTTCATCAG-AGAATAGTGAAGCAAACCATCT
1 TAAGCCTTCA-CAGAAGAGTAGTGAAGC--ACCATCT
* * * *
778688 GAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGC--ACCATCT
* * * *
778724 GAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGC--ACCATCT
* *
778760 GAAGCCTTCAGAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
778794 CAAGCCTTCACAGAAGAGTAGTGAAGCGCCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
778828 CAAGCCTTCACAGAAGAGTAGTGAAACACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
778862 CAAGCCTTCATAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
778896 CAAGCCTTCACAGAATAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
778930 TAAGCCTTCACAGAAAAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
778964 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
778998 TAAGCCTTAACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779032 CAAGCCTTCATAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779066 CAAGCCTTCACAGAAGAGTAGTGAAACACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779100 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* * *
779134 CAAGCCTTCACAGAAGAGTATTGAAGAACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779168 CAAGCCTTCACATAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* * *
779202 TAAGCCTTCATAGAAGAGTAGTGAAGTACCGTCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779236 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
779270 TAAGCCTTCATAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779304 CAAGCCTTCATAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779338 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779372 TAAGCATTCATAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779406 TAAGCCTTCACAGAAGAGT-G-G-AGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779437 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779471 TAAGCCTTCACAGAAGAGT-G-G-AGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779502 TAAGCCTTCACATAAGAGTAGTGGAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
779536 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
779570 TAAGCCTTCACAGAAAAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
* *
779604 TAAGCCTTCACAGAAGAGTAGTGGAGCATCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
779638 TAAGCATTCACA-AAGGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAA-GAGTAGTGAAGCACCATCT
*
779672 TAAGCCTTCACCA-AAGAGTAGTGAAGCAATCATCT
1 TAAGCCTTCA-CAGAAGAGTAGTGAAGC-ACCATCT
*
779707 TAAGCCTTCACAGAGGAGTAGTGAAGCACCATCT
1 TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
*
779741 TAAGCTTTCACCA-AAGAGTAGTGAAGCA
1 TAAGCCTTCA-CAGAAGAGTAGTGAAGCA
779769 AATCCATCCA
Statistics
Matches: 1040, Mismatches: 65, Indels: 26
0.92 0.06 0.02
Matches are distributed among these distances:
31 57 0.05
32 4 0.00
33 6 0.01
34 811 0.78
35 37 0.04
36 125 0.12
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (34 bp):
TAAGCCTTCACAGAAGAGTAGTGAAGCACCATCT
Found at i:782769 original size:45 final size:45
Alignment explanation
Indices: 782719--782858 Score: 110
Period size: 45 Copynumber: 3.1 Consensus size: 45
782709 TTCGACAAAC
782719 TCCATTTTGTTGAGGGATTATAGGGACTGAAAAATTATGACTAAT
1 TCCATTTTGTTGAGGGATTATAGGGACTGAAAAATTATGACTAAT
** *** * * * * * *
782764 TCCATTAGAGTT-ACCCA--CT-GGG-TTTAAAAATCGTTTCGACAAAC
1 TCCATT-TTGTTGAGGGATTATAGGGACTGAAAAAT--TAT-GACTAAT
782808 TCCATTTTGTTGAGGGATTATAGGGACTGAAAAATTATGACTAAT
1 TCCATTTTGTTGAGGGATTATAGGGACTGAAAAATTATGACTAAT
782853 TCCATT
1 TCCATT
782859 AGAGTTACAA
Statistics
Matches: 64, Mismatches: 22, Indels: 18
0.62 0.21 0.17
Matches are distributed among these distances:
41 7 0.11
42 3 0.05
43 6 0.09
44 13 0.20
45 19 0.30
46 6 0.09
47 3 0.05
48 7 0.11
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (45 bp):
TCCATTTTGTTGAGGGATTATAGGGACTGAAAAATTATGACTAAT
Found at i:782782 original size:89 final size:89
Alignment explanation
Indices: 782688--782866 Score: 358
Period size: 89 Copynumber: 2.0 Consensus size: 89
782678 ATCTCGCTTC
782688 CCCACTGGGTTTAAAAATCGTTTCGACAAACTCCATTTTGTTGAGGGATTATAGGGACTGAAAAA
1 CCCACTGGGTTTAAAAATCGTTTCGACAAACTCCATTTTGTTGAGGGATTATAGGGACTGAAAAA
782753 TTATGACTAATTCCATTAGAGTTA
66 TTATGACTAATTCCATTAGAGTTA
782777 CCCACTGGGTTTAAAAATCGTTTCGACAAACTCCATTTTGTTGAGGGATTATAGGGACTGAAAAA
1 CCCACTGGGTTTAAAAATCGTTTCGACAAACTCCATTTTGTTGAGGGATTATAGGGACTGAAAAA
782842 TTATGACTAATTCCATTAGAGTTA
66 TTATGACTAATTCCATTAGAGTTA
782866 C
1 C
782867 AAAAATCACC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (89 bp):
CCCACTGGGTTTAAAAATCGTTTCGACAAACTCCATTTTGTTGAGGGATTATAGGGACTGAAAAA
TTATGACTAATTCCATTAGAGTTA
Found at i:785965 original size:201 final size:199
Alignment explanation
Indices: 785625--786028 Score: 724
Period size: 201 Copynumber: 2.0 Consensus size: 199
785615 AAATCAATGA
785625 AAATTCAATTACAAGTTCAACATTCTAAAATTTTGGTCTACTAGTAAAATTCGATTTGAGATATG
1 AAATTCAATTACAAGTTCAACATTCTAAAATTTTGGTCTACTAGTAAAATTCGATTTGAGATATG
785690 TCATCTTTTCAAAAAAAAATTGTTCACTGTTAAAAATTTAGAATAAACACTCCAAATTCTTCAAA
66 TCATCTTTTCAAAAAAAAATTGTTCACTGTTAAAAATTTAGAATAAACACTCCAAATTCTTCAAA
785755 TTCAAAAACAATTCTCTTAACTCTCAAAATGAT-AATTTTCATATATAA-TG-GTTTTAAAGAGG
131 TTCAAAAACAATTCTCTTAACTCTCAAAATGATAAATTTTCATATATAATTGAGTTTTAAAGAGG
785817 TTTT
196 TTTT
785821 AAATTCAATTACAAGTTCAACATTCTAAAATTTTGGTCTACTAGTAAAATTCGATTTGAGATATA
1 AAATTCAATTACAAGTTCAACATTCTAAAATTTTGGTCTACTAGTAAAATTCGATTTGAG--ATA
785886 TTGTCATCTTTTCAAAAAAAAAAATTGTTCACTGTTAAAAATTTAGAATAAACACTCCAAATTCT
64 -TGTCATCTTTTC--AAAAAAAAATTGTTCACTGTTAAAAATTTAGAATAAACACTCCAAATTCT
785951 TCAAATTCAAAAACAATTCTCTTAACTCTCAAAATGATAAATTTTCATATATAATTGTGAGTTTT
126 TCAAATTCAAAAACAATTCTCTTAACTCTCAAAATGATAAATTTTCATATATAA-T-TGAGTTTT
786016 AAAGAGGTTTT
189 AAAGAGGTTTT
786027 AA
1 AA
786029 GAAAAATATT
Statistics
Matches: 198, Mismatches: 0, Indels: 10
0.95 0.00 0.05
Matches are distributed among these distances:
196 60 0.30
198 3 0.02
199 12 0.06
201 88 0.44
202 15 0.08
205 2 0.01
206 18 0.09
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (199 bp):
AAATTCAATTACAAGTTCAACATTCTAAAATTTTGGTCTACTAGTAAAATTCGATTTGAGATATG
TCATCTTTTCAAAAAAAAATTGTTCACTGTTAAAAATTTAGAATAAACACTCCAAATTCTTCAAA
TTCAAAAACAATTCTCTTAACTCTCAAAATGATAAATTTTCATATATAATTGAGTTTTAAAGAGG
TTTT
Found at i:792291 original size:21 final size:22
Alignment explanation
Indices: 792264--792306 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
792254 AATTTTTTGA
*
792264 AAAAAATGTAAATTAAACCTTC
1 AAAAATTGTAAATTAAACCTTC
* *
792286 AAAAATTTTAATTTAAACCTT
1 AAAAATTGTAAATTAAACCTT
792307 TAAACTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAAATTGTAAATTAAACCTTC
Found at i:800754 original size:64 final size:66
Alignment explanation
Indices: 800658--800787 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 66
800648 AATTTCTTCT
800658 GCACCGCCATCATCCACAGTGAAGCATCTGAGCTG-TTATTGCCTCCTGGTATGTTGATGGCTCA
1 GCACCGCCATCATCCACAGTGAAGCATCTGAGCTGTTTATTGCCTCCTGGTATGTTGATGGCTCA
800722 C
66 C
800723 GCACCGCCATCAT-CACAGTGAAGCATCTGAGCTGTTTATTGCCTCCTGGTATGTTGATGGCTCA
1 GCACCGCCATCATCCACAGTGAAGCATCTGAGCTGTTTATTGCCTCCTGGTATGTTGATGGCTCA
800787 C
66 C
800788 CGTCCTCTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 21 0.33
65 43 0.67
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (66 bp):
GCACCGCCATCATCCACAGTGAAGCATCTGAGCTGTTTATTGCCTCCTGGTATGTTGATGGCTCA
C
Found at i:807660 original size:18 final size:18
Alignment explanation
Indices: 807626--807673 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
807616 ATTCCCAATC
807626 TCTTC-TCTCCTCACCGT
1 TCTTCTTCTCCTCACCGT
* *
807643 TCTTCTTCTCTTCGCCGT
1 TCTTCTTCTCCTCACCGT
807661 TCTTCTTCTCCTC
1 TCTTCTTCTCCTC
807674 GACCATAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.02, C:0.44, G:0.06, T:0.48
Consensus pattern (18 bp):
TCTTCTTCTCCTCACCGT
Found at i:812920 original size:18 final size:18
Alignment explanation
Indices: 812889--812936 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
812879 ATTCCCAATC
812889 TCTTC-TCTCCTCGCCGT
1 TCTTCTTCTCCTCGCCGT
*
812906 TCTTCTTCTCTTCGCCGT
1 TCTTCTTCTCCTCGCCGT
812924 TCTTCTTCTCCTC
1 TCTTCTTCTCCTC
812937 CGACCATAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 5 0.18
18 23 0.82
ACGTcount: A:0.00, C:0.44, G:0.08, T:0.48
Consensus pattern (18 bp):
TCTTCTTCTCCTCGCCGT
Found at i:815551 original size:24 final size:26
Alignment explanation
Indices: 815520--815576 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
815510 AAATTAAAAG
*
815520 TATA-GTTTC-AATTTTTTTAT-AAC
1 TATATGTTTCTAATTTATTTATCAAC
*
815543 TATATGTTTCTGATTTATTTATCAAC
1 TATATGTTTCTAATTTATTTATCAAC
815569 TAATATGT
1 T-ATATGT
815577 ATTGGGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.14
24 5 0.18
25 9 0.32
26 4 0.14
27 6 0.21
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (26 bp):
TATATGTTTCTAATTTATTTATCAAC
Found at i:815753 original size:15 final size:15
Alignment explanation
Indices: 815735--815772 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
815725 ATCTTATTAT
815735 TTTATAATTTATAAA
1 TTTATAATTTATAAA
*
815750 TTTAT-ATTTTTAAA
1 TTTATAATTTATAAA
*
815764 TATATAATT
1 TTTATAATT
815773 ATATGATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTATAATTTATAAA
Found at i:826708 original size:15 final size:13
Alignment explanation
Indices: 826690--826758 Score: 52
Period size: 13 Copynumber: 5.1 Consensus size: 13
826680 AAATTAAGAG
826690 AGAAAATATATAAAA
1 AGAAAA-ATA-AAAA
826705 AGAAAAATAAAAA
1 AGAAAAATAAAAA
*
826718 AGATAGAAA-AATAA
1 AGA-A-AAATAAAAA
*
826732 A-AAAGATAGAAAA
1 AGAAAAATA-AAAA
*
826745 ATAAAAATAAAAA
1 AGAAAAATAAAAA
826758 A
1 A
826759 TAGAAGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
11 2 0.04
12 2 0.04
13 17 0.38
14 15 0.33
15 9 0.20
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (13 bp):
AGAAAAATAAAAA
Found at i:826727 original size:17 final size:17
Alignment explanation
Indices: 826705--826821 Score: 96
Period size: 17 Copynumber: 7.4 Consensus size: 17
826695 ATATATAAAA
826705 AGAAAAATAAAAAAGAT
1 AGAAAAATAAAAAAGAT
826722 AGAAAAATAAAAAAGAT
1 AGAAAAATAAAAAAGAT
826739 AGAAAAAT--AAAA-AT
1 AGAAAAATAAAAAAGAT
*
826753 A-AAAAAT--AGAAGA-
1 AGAAAAATAAAAAAGAT
* *
826766 A-AAAAATAGAAAAGAA
1 AGAAAAATAAAAAAGAT
826782 AGAAAAATGAAAAAATAGAT
1 AGAAAAAT--AAAAA-AGAT
826802 -GAAAAA-AAAAAA-A-
1 AGAAAAATAAAAAAGAT
826815 AGAAAAA
1 AGAAAAA
826822 AAATAGATCA
Statistics
Matches: 87, Mismatches: 4, Indels: 21
0.78 0.04 0.19
Matches are distributed among these distances:
13 16 0.18
14 11 0.13
15 10 0.11
16 6 0.07
17 31 0.36
19 10 0.11
20 3 0.03
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (17 bp):
AGAAAAATAAAAAAGAT
Found at i:826750 original size:23 final size:23
Alignment explanation
Indices: 826724--826795 Score: 87
Period size: 21 Copynumber: 3.2 Consensus size: 23
826714 AAAAAGATAG
826724 AAAAATAAAAAAGATAGAAAAAT
1 AAAAATAAAAAAGATAGAAAAAT
*
826747 AAAAAT-AAAAA-ATAGAAGAA-
1 AAAAATAAAAAAGATAGAAAAAT
* *
826767 AAAAATAGAAAAGAAAGAAAAAT
1 AAAAATAAAAAAGATAGAAAAAT
826790 GAAAAA
1 -AAAAA
826796 ATAGATGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 6 0.15
21 12 0.29
22 12 0.29
23 6 0.15
24 5 0.12
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (23 bp):
AAAAATAAAAAAGATAGAAAAAT
Found at i:826795 original size:38 final size:36
Alignment explanation
Indices: 826703--826826 Score: 135
Period size: 38 Copynumber: 3.3 Consensus size: 36
826693 AAATATATAA
*
826703 AAAGAAAAATAAAAAAGATAGAAAAATAAAAAAGATAGAA-
1 AAAGAAAAAT-AAAAA-ATAGAAGAA-AAAAAAGA-A-AAG
*
826743 AAATAAAAATAAAAAATAGAAGAAAAAAATAGAAAAG
1 AAAGAAAAATAAAAAATAGAAGAAAAAAA-AGAAAAG
* *
826780 AAAGAAAAATGAAAAAATAGATGAAAAAAAAAAAAAG
1 AAAGAAAAAT-AAAAAATAGAAGAAAAAAAAGAAAAG
826817 AAA-AAAAATA
1 AAAGAAAAATA
826827 GATCAAGTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
35 1 0.01
36 8 0.11
37 24 0.32
38 29 0.38
39 5 0.07
40 9 0.12
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (36 bp):
AAAGAAAAATAAAAAATAGAAGAAAAAAAAGAAAAG
Found at i:831004 original size:43 final size:44
Alignment explanation
Indices: 830935--831068 Score: 164
Period size: 44 Copynumber: 3.0 Consensus size: 44
830925 AGTGCAGGAG
* *
830935 CAAGAAATGATGAATGTTGGGGCATTTTTGAAGGTCGTATCATC
1 CAAGAAATGATAAATGTTGGGGCATTTTTGAAGGTCATATCATC
* * **
830979 CAA-AAATGATAAATGTTGGGACATTTTTGAAGGCCCATAT-AAG
1 CAAGAAATGATAAATGTTGGGGCATTTTTGAAGG-TCATATCATC
* *
831022 CAAGAAATAATAAATATTGGGGCATTTTTGAAGGTCCATATCATC
1 CAAGAAATGATAAATGTTGGGGCATTTTTGAAGGT-CATATCATC
831067 CA
1 CA
831069 GGAATACAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
43 32 0.43
44 39 0.53
45 3 0.04
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (44 bp):
CAAGAAATGATAAATGTTGGGGCATTTTTGAAGGTCATATCATC
Found at i:832322 original size:4 final size:4
Alignment explanation
Indices: 832313--834113 Score: 3152
Period size: 4 Copynumber: 460.5 Consensus size: 4
832303 CATCATTTTG
832313 TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832359 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832407 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832455 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832503 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
832551 TACA TAC- TACA TACA TACC TACA TACA -ACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
832597 TACC TACA TACA TACA TACCA TACA TACA T-CA TACA TACA TACA TACA
1 TACA TACA TACA TACA TA-CA TACA TACA TACA TACA TACA TACA TACA
832645 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832693 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832741 TACA TACA TACA -ACA TACA TACA TACA TACA TACA TACA TACA -ACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832787 TACA TACA TACA TAACA -ACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA T-ACA TACA TACA TACA TACA TACA TACA TACA TACA
832835 TACA TACA TACA TACA TACA TACA T-CA T-CA -ACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832880 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC-
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832927 TACA TACA TACA TACA TACA -ACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
832974 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833022 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA -ACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833069 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833117 TACA TACA TACA TAC- TACC TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833164 TACA TAC- -ACA TACA TACA TACA TACA TACA TTACA TACA TACA TAC-
1 TACA TACA TACA TACA TACA TACA TACA TACA -TACA TACA TACA TACA
*
833210 TA-A TACA TACA TACA TACA TACA TACA TACA GACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833257 TACA TACC TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833305 TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TAC-
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833350 TCCA -ACA TACA TACA TACA TACA TACA TAC- TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833396 TACA TACA TACA T-CA TACA TACA TACA TACA TACA T-CA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833442 TACA CACA TACA TACA TACA TACA T-CA TACA TACA TACA TAC- -ACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833487 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833535 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833583 TACA TA-A TACA TACA TACA TACA TACA TAC- TACA TAACA TACA GACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA T-ACA TACA TACA
*
833630 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833678 TACA TACA TCCA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833726 -ACA TACA TACA TA-A TACA TACA TACA TACA TACA TACA -ACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833771 TACA TACA TAC- -ACA TACA TACA T-CA TACA TACA TACA -ACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833815 TACA TACA TAC- TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833862 TACA TAC- TACA TACA TACA TACA TACA TACA T-CA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
833908 TACA TACA TACA T-CA T-CA TACA TACA TACA TACA TACA TACC TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
833954 TACA TACA TACA TACA TACA TACA TACA TACA TAC- -ACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
834000 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
834048 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
834096 TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TA
834114 ATTCTTAAAG
Statistics
Matches: 1729, Mismatches: 21, Indels: 94
0.94 0.01 0.05
Matches are distributed among these distances:
2 12 0.01
3 93 0.05
4 1609 0.93
5 15 0.01
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:837109 original size:2 final size:2
Alignment explanation
Indices: 837102--837169 Score: 127
Period size: 2 Copynumber: 34.0 Consensus size: 2
837092 GTTCATACGG
837102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
837144 AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
837170 CGAAAAAACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:846111 original size:23 final size:23
Alignment explanation
Indices: 846084--846145 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
846074 CATCTTCTGT
* *
846084 CTTTATAATACGTTTTTACATAG
1 CTTTATGACACGTTTTTACATAG
* *
846107 TTTTATGACACGTTTTTATATAG
1 CTTTATGACACGTTTTTACATAG
846130 CTTTATGACACGTTTT
1 CTTTATGACACGTTTT
846146 CGGTTATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.50
Consensus pattern (23 bp):
CTTTATGACACGTTTTTACATAG
Found at i:846840 original size:168 final size:169
Alignment explanation
Indices: 846530--846859 Score: 583
Period size: 169 Copynumber: 2.0 Consensus size: 169
846520 TTTCACGTCG
* *
846530 CTTGATTATGATTAGTGATTTGTCGGTGATCTTTTAATATCTTCATCTCTTTTTGGGTTCCTCTA
1 CTTGATTATGATTAGTGATTTGTCGGTGATCTTTTAATATCTTCATCTCTTTTGGGGTTCATCTA
*
846595 CCGATACAGTCAAATATGTTCGTATCTATATTTTGTTCGAGTTTATTTGATTATGTTTTTTTAAC
66 CCGATACAGTCAAATATGTTCGTATCTATATTTTGTTCGAGTTTATTTGATTATGGTTTTTTAAC
*
846660 ATTTTCCTTGGTCATTGTGTGATCTTAAGTGATGTGTCA
131 ATTTTCCTTGGTCATTATGTGATCTTAAGTGATGTGTCA
846699 CTTGATTATGATTAGTGATTTGTCGGTGAT-TTTTAATATCTTCATCTTCTTTTGGGGTTCATCT
1 CTTGATTATGATTAGTGATTTGTCGGTGATCTTTTAATATCTTCATC-TCTTTTGGGGTTCATCT
* *
846763 TCCGATACAGTCAGATATGTTCGTATCTATATTTTGTTCGAGTTTATTTGATTA-GGTTTTTTAA
65 ACCGATACAGTCAAATATGTTCGTATCTATATTTTGTTCGAGTTTATTTGATTATGGTTTTTTAA
846827 CATTTTCCTTGGTCATTATGTGATCTTAAGTGA
130 CATTTTCCTTGGTCATTATGTGATCTTAAGTGA
846860 CTAGTTTTCT
Statistics
Matches: 154, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
168 57 0.37
169 97 0.63
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.49
Consensus pattern (169 bp):
CTTGATTATGATTAGTGATTTGTCGGTGATCTTTTAATATCTTCATCTCTTTTGGGGTTCATCTA
CCGATACAGTCAAATATGTTCGTATCTATATTTTGTTCGAGTTTATTTGATTATGGTTTTTTAAC
ATTTTCCTTGGTCATTATGTGATCTTAAGTGATGTGTCA
Found at i:846985 original size:2 final size:2
Alignment explanation
Indices: 846974--847003 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
846964 TAGCGGCTTC
846974 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
847004 TAGAACCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:847526 original size:58 final size:59
Alignment explanation
Indices: 847425--847556 Score: 144
Period size: 58 Copynumber: 2.3 Consensus size: 59
847415 ATTTTAGAGT
* *
847425 ATTCTAATTTCATTCTTAAACTATGACTCTCATTCTAAATTAGTCCATAAAATTTTGAAC
1 ATTCTAATTTCA-TCCTAAACTATGACTCTCATTCTAAATTAGTCCACAAAATTTTGAAC
* ** * * *
847485 ATTCTAATTTCA-CCTAAACTATGAC-CTTCTTTCTATCTTAGTCCCCAAACTTTTGAAT
1 ATTCTAATTTCATCCTAAACTATGACTC-TCATTCTAAATTAGTCCACAAAATTTTGAAC
*
847543 ATTCCAATTT-ATCC
1 ATTCTAATTTCATCC
847557 CCAAATTAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
57 2 0.03
58 47 0.77
60 12 0.20
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.42
Consensus pattern (59 bp):
ATTCTAATTTCATCCTAAACTATGACTCTCATTCTAAATTAGTCCACAAAATTTTGAAC
Found at i:847775 original size:60 final size:59
Alignment explanation
Indices: 847721--847832 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 59
847711 AAAGTCTAGA
* * *
847721 GACCAATTTAGAATAA-AAGTCATAGTTTAGGGTTAAAATTGAATTATTTAAAAGTTGAT
1 GACCAATTTAGAATAATAA-TCATAGTTTAAGGATAAAATTGAAATATTTAAAAGTTGAT
* *
847780 GACTAATTTAGAATAATAATCATAGTTTAAGGATGAAATTGAAATATTTAAAA
1 GACCAATTTAGAATAATAATCATAGTTTAAGGATAAAATTGAAATATTTAAAA
847833 ATTTAGGGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
59 45 0.96
60 2 0.04
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (59 bp):
GACCAATTTAGAATAATAATCATAGTTTAAGGATAAAATTGAAATATTTAAAAGTTGAT
Found at i:850992 original size:32 final size:32
Alignment explanation
Indices: 850887--850993 Score: 135
Period size: 32 Copynumber: 3.3 Consensus size: 32
850877 GGCTTGACAA
* * *
850887 CCTATCCAAGGAAGTACCTTGGGGCCTTAGAG
1 CCTACCCAAGGAAATTCCTTGGGGCCTTAGAG
* *
850919 CCTACCCAAAGAAATGT-CTTGGGGCCTCAGAG
1 CCTACCCAAGGAAAT-TCCTTGGGGCCTTAGAG
* *
850951 CCTACCCAAGGAAATTCCTTAGGGCATTAGAG
1 CCTACCCAAGGAAATTCCTTGGGGCCTTAGAG
850983 CCTACCCAAGG
1 CCTACCCAAGG
850994 TCACTTTAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.02
32 63 0.98
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (32 bp):
CCTACCCAAGGAAATTCCTTGGGGCCTTAGAG
Found at i:855647 original size:11 final size:11
Alignment explanation
Indices: 855631--855668 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
855621 TTAAAAAAAA
855631 TATTAATAATT
1 TATTAATAATT
*
855642 TATTAATGATT
1 TATTAATAATT
*
855653 TAATAATAATT
1 TATTAATAATT
855664 TATTA
1 TATTA
855669 CTGATTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (11 bp):
TATTAATAATT
Found at i:855675 original size:11 final size:11
Alignment explanation
Indices: 855631--855675 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
855621 TTAAAAAAAA
*
855631 TATTAATAATT
1 TATTAATGATT
855642 TATTAATGATT
1 TATTAATGATT
* *
855653 TAATAATAATT
1 TATTAATGATT
*
855664 TATTACTGATT
1 TATTAATGATT
855675 T
1 T
855676 TATAATTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (11 bp):
TATTAATGATT
Found at i:855687 original size:22 final size:22
Alignment explanation
Indices: 855634--855681 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
855624 AAAAAAATAT
855634 TAATAATTTATTAATGATTTAA
1 TAATAATTTATTAATGATTTAA
* *
855656 TAATAATTTATTACTGATTTTA
1 TAATAATTTATTAATGATTTAA
855678 TAAT
1 TAAT
855682 TTTTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (22 bp):
TAATAATTTATTAATGATTTAA
Found at i:865406 original size:33 final size:32
Alignment explanation
Indices: 865344--865409 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
865334 TACATCTATC
* * * *
865344 TGAGTCACCAAAGTCATACCGTTATCTCTCTT
1 TGAGGCACCAAAATCATACCCTTACCTCTCTT
865376 TGAGGCACTCAAAATCATACCCTTACCTCTCTT
1 TGAGGCAC-CAAAATCATACCCTTACCTCTCTT
865409 T
1 T
865410 CAGGAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 7 0.24
33 22 0.76
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (32 bp):
TGAGGCACCAAAATCATACCCTTACCTCTCTT
Found at i:866122 original size:26 final size:26
Alignment explanation
Indices: 866092--866217 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 26
866082 TTCAAGATAT
866092 AAAAAGGAAAAGAAAAAGAAAAGAAAG
1 AAAAA-GAAAAGAAAAAGAAAAGAAAG
*
866119 AAAAAGAAAAGGAGAAAG-AAA-AAAG
1 AAAAAGAAAA-GAAAAAGAAAAGAAAG
866144 AAAAGAGAAAAAGAGAAAA-AAAGAGAAA-
1 AAAA-AG-AAAAGA-AAAAGAAA-AGAAAG
* * *
866172 AAAAAAAAAACAGAAA-AAAAGAGAAG
1 AAAAAGAAAAGAAAAAGAAAAGA-AAG
866198 AAAAAGAAGAAGAAAAAGAA
1 AAAAAGAA-AAGAAAAAGAA
866218 GAAAGAGAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 21
0.73 0.07 0.19
Matches are distributed among these distances:
24 3 0.04
25 16 0.20
26 24 0.30
27 27 0.34
28 7 0.09
29 3 0.04
ACGTcount: A:0.79, C:0.01, G:0.21, T:0.00
Consensus pattern (26 bp):
AAAAAGAAAAGAAAAAGAAAAGAAAG
Found at i:866146 original size:34 final size:31
Alignment explanation
Indices: 866093--866226 Score: 107
Period size: 30 Copynumber: 4.2 Consensus size: 31
866083 TCAAGATATA
866093 AAAAGGAAAAGAAAAAGAAAAGAAAGAAAAAG
1 AAAA-GAAAAGAAAAAGAAAAGAAAGAAAAAG
866125 AAAAGGAGAAAGAAAAAAGAAAAG--AGAAAAAG
1 AAAA-GA-AAAG-AAAAAGAAAAGAAAGAAAAAG
* * * *
866157 AGAAA-AAAAGAGAAAAAAAAAAAAACAGAAA-
1 A-AAAGAAAAGA-AAAAGAAAAGAAAGAAAAAG
* *
866188 AAAAGAGAAGAAAAAGAAGAAGAAA-AAGAAG
1 AAAAGAAAAGAAAAAGAA-AAGAAAGAAAAAG
866219 AAAGAGAA
1 AAA-AGAA
866227 CAAATCAAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
29 1 0.01
30 24 0.29
31 15 0.18
32 24 0.29
33 7 0.09
34 11 0.13
ACGTcount: A:0.78, C:0.01, G:0.22, T:0.00
Consensus pattern (31 bp):
AAAAGAAAAGAAAAAGAAAAGAAAGAAAAAG
Found at i:866170 original size:36 final size:36
Alignment explanation
Indices: 866099--866214 Score: 128
Period size: 36 Copynumber: 3.1 Consensus size: 36
866089 TATAAAAAGG
*
866099 AAAAGAAAAAGAAAAGAAAGAAAAAGAAAAGGAGAAAGAA
1 AAAAG-AAAAGAAAA-AAAGAGAAA-AAAA-GAGAAAGAA
*
866139 AAAAGAAAAGAGAAAAAGAGAAAAAAAGAGAAA-AA
1 AAAAGAAAAGAAAAAAAGAGAAAAAAAGAGAAAGAA
*
866174 AAAAAAAACAGAAAAAAAGAGAAGAAAAAGA-AGAAGAA
1 AAAAGAAA-AGAAAAAAAGAGAA-AAAAAGAGA-AAGAA
866212 AAA
1 AAA
866215 GAAGAAAGAG
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
35 9 0.13
36 20 0.29
37 13 0.19
38 13 0.19
39 8 0.12
40 5 0.07
ACGTcount: A:0.79, C:0.01, G:0.20, T:0.00
Consensus pattern (36 bp):
AAAAGAAAAGAAAAAAAGAGAAAAAAAGAGAAAGAA
Found at i:866216 original size:12 final size:12
Alignment explanation
Indices: 866092--866220 Score: 85
Period size: 12 Copynumber: 10.9 Consensus size: 12
866082 TTCAAGATAT
866092 AAAAAGGAA-AAG
1 AAAAA-GAAGAAG
866104 AAAAAGAA-AAG
1 AAAAAGAAGAAG
*
866115 --AAAGAAAAAG
1 AAAAAGAAGAAG
*
866125 -AAAAGGAGAAAG
1 AAAAAGAAG-AAG
*
866137 AAAAAAGAAAAGAG
1 -AAAAAGAAGA-AG
866151 AAAAAG-AGAA-
1 AAAAAGAAGAAG
*
866161 AAAAAG-AGAAA
1 AAAAAGAAGAAG
* *
866172 AAAAAAAAAACAG
1 AAAAAGAAGA-AG
*
866185 AAAAAAAGAGAAG
1 AAAAAGA-AGAAG
866198 AAAAAGAAGAAG
1 AAAAAGAAGAAG
866210 AAAAAGAAGAA
1 AAAAAGAAGAA
866221 AGAGAACAAA
Statistics
Matches: 97, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.06
10 13 0.13
11 17 0.18
12 28 0.29
13 23 0.24
14 10 0.10
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAAGAAG
Found at i:866226 original size:18 final size:17
Alignment explanation
Indices: 866094--866226 Score: 71
Period size: 18 Copynumber: 7.5 Consensus size: 17
866084 CAAGATATAA
866094 AAAG-GAAAAGAAA-AAG
1 AAAGAGAAAA-AAAGAAG
866110 AAA-AGAAAGAAAAAGAA-
1 AAAGAG-AA-AAAAAGAAG
*
866127 AAGGAGAAAGAAAA-AAG
1 AAAGAGAAA-AAAAGAAG
* *
866144 AAAAGAGAAAAAGAGAAAA
1 -AAAGAGAAAAAAAG-AAG
*
866163 AAAGAGAAAAAAA-AAA
1 AAAGAGAAAAAAAGAAG
*
866179 AAACAGAAAAAAAGAGAAG
1 AAAGAG-AAAAAA-AGAAG
866198 AAAAAGAAGAAGAAAAAGAAG
1 --AAAG-AGAA-AAAAAGAAG
866219 AAAGAGAA
1 AAAGAGAA
866227 CAAATCAAAC
Statistics
Matches: 92, Mismatches: 8, Indels: 32
0.70 0.06 0.24
Matches are distributed among these distances:
16 15 0.16
17 22 0.24
18 31 0.34
19 8 0.09
21 10 0.11
22 6 0.07
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (17 bp):
AAAGAGAAAAAAAGAAG
Found at i:867396 original size:16 final size:16
Alignment explanation
Indices: 867377--867420 Score: 79
Period size: 16 Copynumber: 2.7 Consensus size: 16
867367 TTGATCGTTA
867377 ACCGCGTTGACTATTG
1 ACCGCGTTGACTATTG
867393 ACCGCGTTGACTATTG
1 ACCGCGTTGACTATTG
867409 ACCGTCGTTGAC
1 ACCG-CGTTGAC
867421 CATCGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 20 0.74
17 7 0.26
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (16 bp):
ACCGCGTTGACTATTG
Found at i:869706 original size:24 final size:24
Alignment explanation
Indices: 869679--869798 Score: 78
Period size: 24 Copynumber: 5.0 Consensus size: 24
869669 TATCTGATTT
* *
869679 CTGATTTGAATTCAGTTATGATAC
1 CTGACTTGAATTCAGATATGATAC
* *
869703 CTGACTTGGATTCTGATATGATAC
1 CTGACTTGAATTCAGATATGATAC
* * * ***
869727 TTGACCTGGATTTTTATATGATAC
1 CTGACTTGAATTCAGATATGATAC
* * * **
869751 TTGACCTGGATTTTGATATGATAC
1 CTGACTTGAATTCAGATATGATAC
* * *
869775 TTGACTTGGATTCTGATATGATAC
1 CTGACTTGAATTCAGATATGATAC
869799 TTGAACTAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (24 bp):
CTGACTTGAATTCAGATATGATAC
Found at i:869799 original size:24 final size:24
Alignment explanation
Indices: 869695--869802 Score: 162
Period size: 24 Copynumber: 4.5 Consensus size: 24
869685 TGAATTCAGT
* *
869695 TATGATACCTGACTTGGATTCTGA
1 TATGATACTTGACCTGGATTCTGA
* *
869719 TATGATACTTGACCTGGATTTTTA
1 TATGATACTTGACCTGGATTCTGA
*
869743 TATGATACTTGACCTGGATTTTGA
1 TATGATACTTGACCTGGATTCTGA
*
869767 TATGATACTTGACTTGGATTCTGA
1 TATGATACTTGACCTGGATTCTGA
869791 TATGATACTTGA
1 TATGATACTTGA
869803 ACTAAATTAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (24 bp):
TATGATACTTGACCTGGATTCTGA
Found at i:872575 original size:41 final size:42
Alignment explanation
Indices: 872514--872806 Score: 243
Period size: 43 Copynumber: 6.8 Consensus size: 42
872504 GAGCATGCAA
* * * * *
872514 AAACGATAAGGTCTAATCCTTGCACATAGCAAAAGAGCT-GGG
1 AAACTATAAGG-CTTATCCTTGCACACAGCAAAGGAACTGGGG
**
872556 AAACTATAAGGCTTATCCTTGCACACAATAAAGGAACATGGGG
1 AAACTATAAGGCTTATCCTTGCACACAGCAAAGGAAC-TGGGG
* *
872599 AAACTGTAAGCCTTA-CTCTTGCACACAGCAAAGGAACCTGGGG
1 AAACTATAAGGCTTATC-CTTGCACACAGCAAAGGAA-CTGGGG
* * *
872642 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
1 AAACTATAAGGCTTATCCTTGCACACAGCAAA-GGAA-CTGGGG
* * * * *
872686 GAACTGTAAGGCTTACCCTTGCAGACAACAAAAGGAACCTGGCGG
1 AAACTATAAGGCTTATCCTTGCACACAGC-AAAGGAA-CTGG-GG
* * * *
872731 -AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTAGGG
1 AAACTATAAGGCTTATCCTTGCACACAGCAAA-GGAA-CTGGGG
* * *
872774 -AACTGTAAGGCTTACCCTTGCACACAACAAAGG
1 AAACTATAAGGCTTATCCTTGCACACAGCAAAGG
872807 GGTCTGCTGT
Statistics
Matches: 225, Mismatches: 17, Indels: 18
0.87 0.07 0.07
Matches are distributed among these distances:
41 20 0.09
42 14 0.06
43 102 0.45
44 84 0.37
45 5 0.02
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (42 bp):
AAACTATAAGGCTTATCCTTGCACACAGCAAAGGAACTGGGG
Found at i:872620 original size:43 final size:43
Alignment explanation
Indices: 872553--872806 Score: 368
Period size: 43 Copynumber: 5.9 Consensus size: 43
872543 CAAAAGAGCT
* * * *
872553 GGGAAACTATAAGGCTTATCCTTGCACACAATAAAGGAACATG
1 GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTG
* * *
872596 GGGAAACTGTAAGCCTTACTCTTGCACACAGCAAAGGAACCTG
1 GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTG
872639 GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTG
1 GGGAAACTGTAAGGCTTACCCTTGCACACAACAAA-GGAACCTG
* *
872683 GGGGAACTGTAAGGCTTACCCTTGCAGACAACAAAAGGAACCTG
1 GGGAAACTGTAAGGCTTACCCTTGCACACAAC-AAAGGAACCTG
*
872727 GCGG-AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTA
1 G-GGAAACTGTAAGGCTTACCCTTGCACACAACAAA-GGAACCTG
872771 GGG-AACTGTAAGGCTTACCCTTGCACACAACAAAGG
1 GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGG
872807 GGTCTGCTGT
Statistics
Matches: 193, Mismatches: 14, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
42 2 0.01
43 104 0.54
44 82 0.42
45 5 0.03
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (43 bp):
GGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTG
Found at i:872735 original size:131 final size:130
Alignment explanation
Indices: 872557--872807 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 130
872547 AGAGCTGGGA
* * *
872557 AACTATAAGGCTTATCCTTGCACACAATAAAGGAACATGGGGAAACTGTAAGCCTTACTCTTGCA
1 AACTATAAGGCTTACCCTTGCACACAAAAAAGGAACATGGGGAAACTGTAAGCCTTACCCTTGCA
* *
872622 CACAGCAAA-GGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
66 CACAACAAAGGGAACCTAGGG-AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
872686 G
130 G
* * * *
872687 AACTGTAAGGCTTACCCTTGCAGACAACAAAAGGAACCTGGCGG-AACTGTAAGGCTTACCCTTG
1 AACTATAAGGCTTACCCTTGCACACAA-AAAAGGAACATGG-GGAAACTGTAAGCCTTACCCTTG
872751 CACACAACAAAGGGAACCTAGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGG
64 CACACAACAAAGGGAACCTAGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGG
872808 GTCTGCTGTA
Statistics
Matches: 109, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
130 24 0.22
131 73 0.67
132 12 0.11
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (130 bp):
AACTATAAGGCTTACCCTTGCACACAAAAAAGGAACATGGGGAAACTGTAAGCCTTACCCTTGCA
CACAACAAAGGGAACCTAGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
Found at i:875877 original size:159 final size:158
Alignment explanation
Indices: 875572--875889 Score: 591
Period size: 159 Copynumber: 2.0 Consensus size: 158
875562 TAGGTATACC
875572 CGGTCAAAGTCAAAGGTCGTTTAATGCCCTGTCAAAGCCAGTTAAAGTTTTGGTCAACAGTGGTC
1 CGGTCAAAGTCAAAGGTCGTTTAATGCCCTGTCAAAGCCAGTTAAAGTTTTGGTCAACAGTGGTC
875637 AACGCCGTCAACAGGTCAACGGGCCGGGTCGGTTATGACCGGTCAAAATAGGAGCAAAACCGGTC
66 AACGCCGTCAACAGGTCAACGGGCCGGGTCGGTTATGACCGGTCAAAATAGGAGCAAAACCGGTC
875702 AAACCGGTCATTTTTTTCTTCCCCACGCT
131 AAACCGGTCA-TTTTTTCTTCCCCACGCT
875731 CGGTCAAAGTCAAAGGTCGTTTAATGCCCTGTCAAAGCCAGTTAAAGTTTTGGTCAACAGTGGTC
1 CGGTCAAAGTCAAAGGTCGTTTAATGCCCTGTCAAAGCCAGTTAAAGTTTTGGTCAACAGTGGTC
*
875796 AACGCCGGTCAACAGGTCAACGGGTCGGGTCGAGTTATGACCGGTCAAAATAGGAGCAAAACCGG
66 AACGCC-GTCAACAGGTCAACGGGCCGGGTCG-GTTATGACCGGTCAAAATAGGAGCAAAACCGG
875861 TCAAACCGGTCATTTTTTTCTTCCCCACG
129 TCAAACCGGTCA-TTTTTTCTTCCCCACG
875890 TGCAGTGGCG
Statistics
Matches: 156, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
159 71 0.46
160 24 0.15
161 61 0.39
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (158 bp):
CGGTCAAAGTCAAAGGTCGTTTAATGCCCTGTCAAAGCCAGTTAAAGTTTTGGTCAACAGTGGTC
AACGCCGTCAACAGGTCAACGGGCCGGGTCGGTTATGACCGGTCAAAATAGGAGCAAAACCGGTC
AAACCGGTCATTTTTTCTTCCCCACGCT
Found at i:877836 original size:42 final size:42
Alignment explanation
Indices: 877784--878069 Score: 347
Period size: 43 Copynumber: 6.6 Consensus size: 42
877774 CAAAAACGAC
* * * * * * *
877784 AAGGTCTTATCCTTGCACATAGCAAAAGAGCTTAGAAAACTGT
1 AAGG-CTTACCCTTGCACACAACAAAGGAACTTGGGAAACTGT
* *
877827 AAGGCTTATCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAA-CTTGGGAAACTGT
*
877870 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACTTGGGAAACTGT
* * *
877912 AAGGCTTACCCTTGCACACAAAAAAGGGAACCTGGGGGAACTGT
1 AAGGCTTACCCTTGCACACAACAAA-GGAA-CTTGGGAAACTGT
* * *
877956 AAGGCTTACCCTTGCACACAGCAAAAGGAACCTGGGGGAACTGT
1 AAGGCTTACCCTTGCACACAAC-AAAGGAA-CTTGGGAAACTGT
* *
878000 AAGGCTTACCCTTGCACACAACAAAAGGAACCTGGGGAACTGT
1 AAGGCTTACCCTTGCACACAAC-AAAGGAACTTGGGAAACTGT
878043 AAGGCTTACCCTTGCACACAACAAAGG
1 AAGGCTTACCCTTGCACACAACAAAGG
878070 GGCCTGCTGT
Statistics
Matches: 220, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
42 61 0.28
43 79 0.36
44 77 0.35
45 3 0.01
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (42 bp):
AAGGCTTACCCTTGCACACAACAAAGGAACTTGGGAAACTGT
Found at i:877876 original size:43 final size:43
Alignment explanation
Indices: 877820--878069 Score: 414
Period size: 44 Copynumber: 5.8 Consensus size: 43
877810 AGAGCTTAGA
*
877820 AAACTGTAAGGCTTATCCTTGCACACAACAAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
877863 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCT-GGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
*
877905 AAACTGTAAGGCTTACCCTTGCACACAAAAAAGGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAA-GGAACCTGGGG
* *
877949 GAACTGTAAGGCTTACCCTTGCACACAGCAAAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAAC-AAAGGAACCTGGGG
*
877993 GAACTGTAAGGCTTACCCTTGCACACAACAAAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAAC-AAAGGAACCTGGGG
878037 -AACTGTAAGGCTTACCCTTGCACACAACAAAGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGG
878070 GGCCTGCTGT
Statistics
Matches: 198, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
42 39 0.20
43 73 0.37
44 83 0.42
45 3 0.02
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (43 bp):
AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
Found at i:884022 original size:24 final size:24
Alignment explanation
Indices: 883990--884100 Score: 145
Period size: 24 Copynumber: 4.7 Consensus size: 24
883980 TTCAGTTATT
*
883990 ATACCTGACCTGGATTATGATATG
1 ATACTTGACCTGGATTATGATATG
* * *
884014 ATACTTGACTTGGATTTTGGTATG
1 ATACTTGACCTGGATTATGATATG
*
884038 ATACTTGACCTGGATTTTGATATG
1 ATACTTGACCTGGATTATGATATG
*
884062 ATACTTGA-CTGGATT-TGATCTG
1 ATACTTGACCTGGATTATGATATG
*
884084 ATACTTGACCTGAATTA
1 ATACTTGACCTGGATTA
884101 GCTTTGATAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.18
23 13 0.17
24 50 0.65
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (24 bp):
ATACTTGACCTGGATTATGATATG
Found at i:888072 original size:30 final size:29
Alignment explanation
Indices: 888036--888094 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
888026 CAACTTCTCT
*
888036 AAAATTACCAAATTGGTTCCC-AATTTTTCA
1 AAAATTA-CAAAATGG-TCCCAAATTTTTCA
888066 AAAATTACAAAATGGTCCCTAAATTTTTC
1 AAAATTACAAAATGGTCCC-AAATTTTTC
888095 TAAGGCTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 4 0.15
29 7 0.27
30 15 0.58
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.36
Consensus pattern (29 bp):
AAAATTACAAAATGGTCCCAAATTTTTCA
Found at i:888830 original size:31 final size:31
Alignment explanation
Indices: 888787--888849 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
888777 AATCACCATT
888787 AAACCAAGACACCTCAACCTTATCATCTTCC
1 AAACCAAGACACCTCAACCTTATCATCTTCC
*
888818 AAACCAATACACCTCAACCTTATCATCTTCC
1 AAACCAAGACACCTCAACCTTATCATCTTCC
888849 A
1 A
888850 TAAGTCAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.38, G:0.02, T:0.24
Consensus pattern (31 bp):
AAACCAAGACACCTCAACCTTATCATCTTCC
Found at i:900274 original size:44 final size:46
Alignment explanation
Indices: 900202--900287 Score: 149
Period size: 44 Copynumber: 1.9 Consensus size: 46
900192 TCATTTTTTC
900202 ATTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGTTT
1 ATTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGTTT
*
900248 ATTTTTGAAT-AA-GCATGCGAATTAGATATCATGCGGTTAG
1 ATTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAG
900288 AATTTTTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 27 0.69
45 2 0.05
46 10 0.26
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (46 bp):
ATTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGTTT
Found at i:900301 original size:44 final size:43
Alignment explanation
Indices: 900203--900303 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 43
900193 CATTTTTTCA
*
900203 TTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGTTT
1 TTTTTGAAT-AATGCATGCGAACTAGATATCATGCGGTTA-GATT
*
900248 ATTTTTGAATAA-GCATGCGAATTAGATATCATGCGGTTAGAATT
1 -TTTTTGAATAATGCATGCGAACTAGATATCATGCGGTTAG-ATT
900292 TTTTGTGAATAA
1 TTTT-TGAATAA
900304 CAAAGCATGG
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
43 5 0.10
44 35 0.69
45 2 0.04
46 9 0.18
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (43 bp):
TTTTTGAATAATGCATGCGAACTAGATATCATGCGGTTAGATT
Found at i:910963 original size:12 final size:12
Alignment explanation
Indices: 910946--910972 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
910936 AATGCAGAAA
910946 TTATTGTAGCAG
1 TTATTGTAGCAG
910958 TTATTGTAGCAG
1 TTATTGTAGCAG
910970 TTA
1 TTA
910973 GCAGCGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (12 bp):
TTATTGTAGCAG
Found at i:911405 original size:81 final size:81
Alignment explanation
Indices: 911270--911661 Score: 603
Period size: 81 Copynumber: 4.9 Consensus size: 81
911260 TATGGGTGTT
* *
911270 ACAGAAAGATGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAACGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
* *
911335 CTTAGTTGTGCATTTG
66 CCTAGCTGTGCATTTG
* * *
911351 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATACATTTGAGTAAAAGATTAATGT
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
*
911416 TCTAGCTGTGCATTTG
66 CCTAGCTGTGCATTTG
* * *
911432 ATAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTTAAAGATTAATGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
911497 CCTAGCTGTGCATTTG
66 CCTAGCTGTGCATTTG
* * * *
911513 --AGAAA--TGTCAATTATGCTAGTTATATGAAAGGTTAAATATCTTTGAGTAAAAGTTTAATGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
911574 CCTAGCTGTGCATTTG
66 CCTAGCTGTGCATTTG
* *
911590 ACAGAAAGGTGTCAATTATGTCAGTTAGATGAAATGTTAAATACCTTTGAGTAAAAGATTAATGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
911655 CCTAGCT
66 CCTAGCT
911662 AAGATTAATG
Statistics
Matches: 281, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
77 67 0.24
79 10 0.04
81 204 0.73
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (81 bp):
ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
CCTAGCTGTGCATTTG
Done.