Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009573.1 Hibiscus syriacus cultivar Beakdansim tig00116938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1247605
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 6
Found at i:911588 original size:158 final size:160
Alignment explanation
Indices: 911270--911661 Score: 601
Period size: 158 Copynumber: 2.5 Consensus size: 160
911260 TATGGGTGTT
* *
911270 ACAGAAAGATGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAACGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
* *
911335 CTTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATACATTTG
66 CCTAGCTGTGCATTTGA-AGAAA-GTGTCAATTATGCCAGTTAGATGAAAGGCTAAATACATTTG
**
911400 AGTAAAAGATTAATGTTCTAGCTGTGCATTTG
129 AGTAAAAGATTAATGGCCTAGCTGTGCATTTG
* * *
911432 ATAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTTAAAGATTAATGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
* * *
911497 CCTAGCTGTGCATTTG-AGAAA-TGTCAATTATGCTAGTTATATGAAAGGTTAAATATC-TTTGA
66 CCTAGCTGTGCATTTGAAGAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATA-CATTTGA
*
911559 GTAAAAGTTTAATGGCCTAGCTGTGCATTTG
130 GTAAAAGATTAATGGCCTAGCTGTGCATTTG
* *
911590 ACAGAAAGGTGTCAATTATGTCAGTTAGATGAAATGTTAAATACCTTTGAGTAAAAGATTAATGG
1 ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
911655 CCTAGCT
66 CCTAGCT
911662 AAGATTAATG
Statistics
Matches: 211, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
158 131 0.62
159 1 0.00
160 5 0.02
162 74 0.35
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (160 bp):
ACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGG
CCTAGCTGTGCATTTGAAGAAAGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATACATTTGAG
TAAAAGATTAATGGCCTAGCTGTGCATTTG
Found at i:911667 original size:18 final size:18
Alignment explanation
Indices: 911644--911680 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
911634 CTTTGAGTAA
911644 AAGATTAATGGCCTAGCT
1 AAGATTAATGGCCTAGCT
911662 AAGATTAATGGCCTAGCT
1 AAGATTAATGGCCTAGCT
911680 A
1 A
911681 TGCATTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (18 bp):
AAGATTAATGGCCTAGCT
Found at i:911738 original size:99 final size:99
Alignment explanation
Indices: 911567--911758 Score: 312
Period size: 99 Copynumber: 1.9 Consensus size: 99
911557 GAGTAAAAGT
* * * * *
911567 TTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAATGTTAAAT
1 TTAATGGCCTAGCTATGCATTTCACAGAAAGGTGTCAATTATGCCAGTTAAATGAAAGGTTAAAT
911632 ACCTTTGAGTAAAAGATTAATGGCCTAGCTAAGA
66 ACCTTTGAGTAAAAGATTAATGGCCTAGCTAAGA
* *
911666 TTAATGGCCTAGCTATGCATTTCATAGAAATGTGTCAATTATGCCAGTTAAATGAAAGGTTAAAT
1 TTAATGGCCTAGCTATGCATTTCACAGAAAGGTGTCAATTATGCCAGTTAAATGAAAGGTTAAAT
*
911731 ACCTTTGAGTAAAATATTAATGGCCTAG
66 ACCTTTGAGTAAAAGATTAATGGCCTAG
911759 TTGTGCATTT
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 85 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (99 bp):
TTAATGGCCTAGCTATGCATTTCACAGAAAGGTGTCAATTATGCCAGTTAAATGAAAGGTTAAAT
ACCTTTGAGTAAAAGATTAATGGCCTAGCTAAGA
Found at i:912497 original size:81 final size:81
Alignment explanation
Indices: 911662--912476 Score: 1144
Period size: 81 Copynumber: 10.1 Consensus size: 81
911652 TGGCCTAGCT
* * * * *
911662 AAGATTAATGGCCTAGCTATGCATTTCATAGAAATGTGTCAATTATGCCAGTTAAATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
911727 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
* * * *
911743 AATATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTTTACCAGTTAGATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
*
911808 AAATACATTTGAGTAA
66 AAATACCTTTGAGTAA
* * * * * *
911824 AAGATTAATGGCATAGATGTCCATTTGACAGAAAGATGGCAATTATACCAGTTAGATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
911889 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
* * *
911905 ATGATTAATGGCATAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAAGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
911970 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
* * * *** * *
911986 AAGATTAACGGCTTAGTTGTGCGCCTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAATGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
* *
912051 AAATACCTTTGAATTA
66 AAATACCTTTGAGTAA
* * * *
912067 AAGATTAATGGCCTAGTTGTGCATTTGAAAGAAAGGTTTTAATTATGCCAGTTAGATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
912132 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
*
912148 AAGATTAATGGCCTAGCTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
912213 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
* * * * *
912229 AAGATTAATGGTCTAGCTGTGCATTTGATAGAAAGGTGTCGATTATTCCAATTAGATGAAAGGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
912294 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
* * * * ** ** *
912310 AAGATTAAAGGTCTAGCTTTGCATTTGACATAAATATGTCAATTATGTTAGTTAGATGAAATGTT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
912375 AAATACCTTTGAGTAA
66 AAATACCTTTGAGTAA
** * *
912391 AAGATTAATAACCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGAT
1 AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
* *
912456 AAATTCCTTTGGGTAA
66 AAATACCTTTGAGTAA
912472 AAGAT
1 AAGAT
912477 GAAATACTTA
Statistics
Matches: 650, Mismatches: 84, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 650 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (81 bp):
AAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTT
AAATACCTTTGAGTAA
Found at i:914279 original size:134 final size:134
Alignment explanation
Indices: 913466--914284 Score: 818
Period size: 134 Copynumber: 6.1 Consensus size: 134
913456 ATTGAGAAAC
* * *
913466 GTTGATTTATTCCACTGTT-CTTCAGGGAAGATTGAATTGAGGCAGACTTGTTCCACTGTTACTC
1 GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTC
* * * *
913530 AGGGAATATTAAATCTTGAATGAGAGGGATCTATTCCGCTTTTTCTTGAGGGAAAATCATATCTA
66 AGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCTA
*
913595 GGGA
131 AGGA
* * * * * * *
913599 CGTTGATTCATTCAACTATTACAT-AAGGAAGATTGAATTGAGGTAAACTTGTTCCACTATTACT
1 -GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACT
* * * * * * *
913663 CAGGAAATATCAAATCATGAAAGAGAGGGATTTGTTCAGCTTATTCCTGAGGGAAAATTAGA-CT
65 CAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCT
* *
913727 AGGGTT
130 AAGG-A
* * * * * *
913733 GTTGATTCGTTCCATTGTT-CTTTAGGGAAGATTGAATCGAGGCAGACTTATTCCACT-GTACTT
1 GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTC
* * * * * * *
913796 AGGGAATATCAAATATTGAAAGAAATGGATTTGTTCCGCTTCTTCTTGAGGGAAAATTAGATCCA
66 AGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCTA
913861 AGGAA
131 AGG-A
* * * * *
913866 GTTGATTCATTCCACTGTCAC-TCA-TGAATATTGAATCAAGGCAGACTTGTTCCACTATAACTC
1 GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTC
* * **
913929 AGGGAATATCAAATCTTGAAAGATATGGG-TTTGTTTTGCTTTTTCTTGAGGGAAAATCAGATCT
66 AGGGAATATCAAATCTTGAAAGAGA-GGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCT
*
913993 GAGGA
130 AAGGA
* * *
913998 CGTTGATTTATTCCACTGTTACTT-AGGGAAGATTGAATCGAGGCAGACTTGTTTCACTGTTACA
1 -GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTAC-
* * * * *
914062 T-ATGGAATATCAAATCTTGAAAGGGATGGATCTG-TCTCGCTTTTTCTTAAGGGAAAATTAGAT
64 TCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTC-CGCTTTTTCTTGAGGGAAAATCAGAT
**
914125 CTGGGGACA
128 CTAAGG--A
* * * *
914134 GTT-ATTCATTCCAATGTTAC-TCAGGGAAGATTGAATTGAGGTAGACTTGTTCCACTTTTACTC
1 GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTC
* * * * * * *
914197 AAGAAATATCAAATCTTGAAAGAGAGGGATCTATTCCACTTCTTCTTGAGGGAAAATCATATATA
66 AGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCTA
**
914262 AAAA
131 AGGA
*
914266 TGTTGATTAATTCCACTGT
1 -GTTGATTCATTCCACTGT
914285 CCTACAAGGA
Statistics
Matches: 560, Mismatches: 105, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
132 89 0.16
133 159 0.28
134 303 0.54
135 8 0.01
136 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (134 bp):
GTTGATTCATTCCACTGTTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTC
AGGGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTTTTCTTGAGGGAAAATCAGATCTA
AGGA
Found at i:915996 original size:1 final size:1
Alignment explanation
Indices: 915985--916060 Score: 62
Period size: 1 Copynumber: 76.0 Consensus size: 1
915975 TTCTTCTTTC
* * * * * * ** * *
915985 TTTTATTTTTTTTTTCTTTTCTTCTTTTTTTCTTTTTCTTTTTTTTTTTTTTCCTTTTCTTTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
916050 TTTTTTTTTTT
1 TTTTTTTTTTT
916061 CAAATGTGGT
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:915997 original size:21 final size:19
Alignment explanation
Indices: 915973--916060 Score: 95
Period size: 21 Copynumber: 4.3 Consensus size: 19
915963 CTTACCTATC
*
915973 TTTTCTTCTTTCTTTTATTT
1 TTTTTTTCTTTCTTTT-TTT
915993 TTTTTTTCTTTTCTTCTTTTT
1 TTTTTTTC-TTTCTT-TTTTT
*
916014 TTCTTTTTCTTTTTTTTTTT
1 TT-TTTTTCTTTCTTTTTTT
916034 TTTCCTTTTCTTTTCTTTTTTT
1 TTT--TTTTC-TTTCTTTTTTT
916056 TTTTT
1 TTTTT
916061 CAAATGTGGT
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
19 1 0.02
20 16 0.27
21 21 0.36
22 21 0.36
ACGTcount: A:0.01, C:0.14, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTCTTTCTTTTTTT
Found at i:916002 original size:37 final size:36
Alignment explanation
Indices: 915960--916060 Score: 97
Period size: 37 Copynumber: 2.9 Consensus size: 36
915950 CCTTATTCTC
915960 TTTCTTACCTATCTTTTCTTC-TTTCTTTTATTTTTTT
1 TTTCTTACCT-TCTTTTCTTCTTTTCTTTT-TTTTTTT
** *
915997 TTTCTTTTCTTCTTTTTTTCTTTTTCTTTTTTTTTTT
1 TTTCTTACCTTCTTTTCTTC-TTTTCTTTTTTTTTTT
916034 TTTCCTT---TTCTTTTCTT-TTTT-TTTTTT
1 TTT-CTTACCTTCTTTTCTTCTTTTCTTTTTT
916061 CAAATGTGGT
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
32 6 0.11
33 4 0.07
35 9 0.16
36 9 0.16
37 18 0.32
38 11 0.19
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (36 bp):
TTTCTTACCTTCTTTTCTTCTTTTCTTTTTTTTTTT
Found at i:916027 original size:32 final size:31
Alignment explanation
Indices: 915972--916060 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 31
915962 TCTTACCTAT
915972 CTTTTCTTCTTTCTTTTATTTTTTTTTTCTTTT-
1 CTTTTC-T-TTTCTTTT-TTTTTTTTTTCTTTTC
* *
916005 CTTCTTTTTTTCTTTTTCTTTTTTTTTTTTTTC
1 CTT-TTCTTTTCTTTTT-TTTTTTTTTCTTTTC
916038 CTTTTCTTTTCTTTTTTTTTTTT
1 CTTTTCTTTTCTTTTTTTTTTTT
916061 CAAATGTGGT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
31 8 0.16
32 33 0.66
33 7 0.14
34 2 0.04
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (31 bp):
CTTTTCTTTTCTTTTTTTTTTTTTTCTTTTC
Found at i:916032 original size:38 final size:39
Alignment explanation
Indices: 915973--916061 Score: 128
Period size: 38 Copynumber: 2.3 Consensus size: 39
915963 CTTACCTATC
*
915973 TTTTCTTCTTTCTTTTATTTTTTTTTTCTTTTC-TTCTTT
1 TTTTCTT-TTTCTTTTATTTTTTTTTCCTTTTCTTTCTTT
*
916012 TTTTCTTTTTCTTTTTTTTTTTTTTCCTTTTCTTTTCTTT
1 TTTTCTTTTTCTTTTATTTTTTTTTCCTTTTC-TTTCTTT
916052 TTTT-TTTTTC
1 TTTTCTTTTTC
916062 AAATGTGGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
38 23 0.50
39 13 0.28
40 10 0.22
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (39 bp):
TTTTCTTTTTCTTTTATTTTTTTTTCCTTTTCTTTCTTT
Found at i:917600 original size:9 final size:10
Alignment explanation
Indices: 917583--917615 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
917573 AAGTGTCAAA
917583 AATGATAAAG
1 AATGATAAAG
917593 AATG-TAAAG
1 AATGATAAAG
*
917602 AATGACAAAG
1 AATGATAAAG
917612 AATG
1 AATG
917616 TGAAATGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.58, C:0.03, G:0.21, T:0.18
Consensus pattern (10 bp):
AATGATAAAG
Found at i:926057 original size:42 final size:41
Alignment explanation
Indices: 925993--926081 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 41
925983 AAATGGTAAG
* *
925993 TCCTTCGGGCGATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCGGGCGATCAGTAAGTCTTTCGAGAAAGATGA-TAAA
* * * *
926035 TCCTTCGGGTC-ATCTGTCAGTCTTTTGAGAAAGATGATAAG
1 TCCTTCGGG-CGATCAGTAAGTCTTTCGAGAAAGATGATAAA
926076 TCCTTC
1 TCCTTC
926082 AGACTATCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 9 0.22
42 30 0.75
43 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (41 bp):
TCCTTCGGGCGATCAGTAAGTCTTTCGAGAAAGATGATAAA
Found at i:926526 original size:251 final size:255
Alignment explanation
Indices: 925869--926748 Score: 1126
Period size: 251 Copynumber: 3.5 Consensus size: 255
925859 AGTTGTTTAT
** *
925869 ATAATTTGAAAAATGAGAAA-CAATTTTCAAAGTTTCTCATTTAGA-ATTTTTAGAAAAT-AAA-
1 ATAATTTGAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTA-ATATTTTCAGAAAATGAAAT
*
925930 TTTTGAAAAGTAAGAAAGC-AATTCCAAAGTTTCTTACC-AGTAAACTATTTCCAAAA-TGGTAA
65 TTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
*
925992 GTCCTTCGGGCGATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTC
130 GTCCTTCGGGC-ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTG-CAGTC
* * ** * * *
926057 TTTTGAGAAAGATGATAAGTCCTTCAGACTATCTATAA-ACCTTCGGGTAAGATGCTTT-TATG
193 -TTTCAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGGGCAAGATGCTTTCTATG
* *
926119 ATAATTTGAAAAATAAGAAAGTGATTTTCAAAGTTTCTCATTTAATA-TTTCAGAAAATGAAACT
1 ATAATTTGAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATT
* * * * *
926183 TTTGAAAAGTAAG-AA-CAATTACCAAAGTTTCTTACCTAGTAAATTACTTAC-AAATTGGTAAG
66 TTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
926245 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGCAGTC-T
131 TCCTTCGGG-CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGCAGTCTT
*
926309 TCAAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGAGCAAGATG-TTTCATATG
195 TC-AGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGGGCAAGATGCTTTC-TATG
* * * *
926371 ATAACTTG-AAAATGAGAAAGTGATTTTCAAAGTTTTTCATTTAGTATTTTCAGAATAT-AAATT
1 ATAATTTGAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATT
*
926434 TTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTA-TTCCAAAATTGGCAAG
66 TTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
* * * *
926498 TCCTTCAGGCATCAGAAAGT-TTTCGAGCATGA--ATTAAATCCTTCAGGTCATCTTTCAGTCTT
131 TCCTTCGGGCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCAT-TTGCAGTCTT
* * * * *
926560 TC-GCATGACGATAAGTCATTTGGGCCATCTATAAGATCTTTGGGCAAGATGCTTTC-AT-
195 TCAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGGGCAAGATGCTTTCTATG
* * * *
926618 ATAATTTGAAAATTGAGAAAG-CAGTTTTCAAAGCTTCTCATTTAATATTTTTAGAAAATGAAAT
1 ATAATTTGAAAAATGAGAAAGTGA-TTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAAT
* * * *
926682 TTTTGAAAAGTAAGAAAGTGATTTCCAAAGGTTCTTACCTAGTAAACTATTTCTAAAATTGTTAA
65 TTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
926747 GT
130 GT
926749 ATTCTAGGTC
Statistics
Matches: 555, Mismatches: 52, Indels: 46
0.85 0.08 0.07
Matches are distributed among these distances:
247 8 0.01
248 43 0.08
249 114 0.21
250 87 0.16
251 133 0.24
252 123 0.22
253 47 0.08
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (255 bp):
ATAATTTGAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATT
TTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
TCCTTCGGGCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGCAGTCTTT
CAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGGGCAAGATGCTTTCTATG
Found at i:926915 original size:173 final size:173
Alignment explanation
Indices: 926585--926921 Score: 493
Period size: 173 Copynumber: 1.9 Consensus size: 173
926575 TCATTTGGGC
* * * * *
926585 CATCTATAAGATCTTTGGGCAAGATGCTTTCATATAATTTGAAAATTGAGAAAGCAGTTTTCAAA
1 CATCTATAAGACCTTCGGGAAAGATGCTTTCATATAATTTGAAAAATAAGAAAGCAGTTTTCAAA
* *
926650 GCTTCTCATTTAATATTTTTAGAAAATGAAATTTTTGAAAAGTAAGAAAGTGATTTCCAAAGGTT
66 GCTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGTGATCTCCAAAGGTT
* * *
926715 CTTACCTAGTAAACTATTTCTAAAATTGTTAAGTATTCTAGGT
131 CTTACCTAGTAAAATATTTCCAAAATTGGTAAGTATTCTAGGT
926758 CATCTATAAGACCTTCGGGAAAGATGCTTTCATATGATAATTTGAAAAATAAGAAAGC-GATTTT
1 CATCTATAAGACCTTCGGGAAAGATGCTTTC--AT-ATAATTTGAAAAATAAGAAAGCAG-TTTT
* *
926822 CAAAG-TT-TCATTTAGTATTTTCAGAATATGAAATTTTTGAAAAGTAAGAAAGTGATCTCCAAA
62 CAAAGCTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGTGATCTCCAAA
*
926885 GTTTC-TACCTAGTAAAATATTTCCAAAATTGGTAAGT
127 GGTTCTTACCTAGTAAAATATTTCCAAAATTGGTAAGT
926922 TCTTCAGGCC
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
173 57 0.39
174 56 0.38
175 5 0.03
176 29 0.20
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (173 bp):
CATCTATAAGACCTTCGGGAAAGATGCTTTCATATAATTTGAAAAATAAGAAAGCAGTTTTCAAA
GCTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGTGATCTCCAAAGGTT
CTTACCTAGTAAAATATTTCCAAAATTGGTAAGTATTCTAGGT
Found at i:927297 original size:187 final size:188
Alignment explanation
Indices: 926982--927335 Score: 676
Period size: 187 Copynumber: 1.9 Consensus size: 188
926972 CATCTCTCTT
926982 GACAACATCATAATGAAACCGGACAAAAATGCATTATCTTTTTTTATTTATCTTTCCCTATTCTT
1 GACAACATCATAATGAAACCGGACAAAAATGCATTATCTTTTTTTATTTATCTTTCCCTATTCTT
927047 GTTAACACAAGCATGGGCAAAGAGGGCAGTTTTAGACACCCATTTTGTCGTTTGTATTTTTT-TA
66 GTTAACACAAGCATGGGCAAAGAGGGCAGTTTTAGACACCCATTTTGTCGTTTGTATTTTTTATA
927111 ATTATTTAATATTAAATATTGATGTTATTTAATTTCGTCATCTGTTAGTCTCACTTGA
131 ATTATTTAATATTAAATATTGATGTTATTTAATTTCGTCATCTGTTAGTCTCACTTGA
927169 GACAACATCATAATGAAACCGGACAAAAATGCATTATC-TTTTTTATTTATCTTTTCCCTATTCT
1 GACAACATCATAATGAAACCGGACAAAAATGCATTATCTTTTTTTATTTATC-TTTCCCTATTCT
927233 TGTTAACACAAGCATGGGCAAAGAGGGGCAGTTTTAGACACCCATTTTGTCGTTTGTATTTTTTA
65 TGTTAACACAAGCATGGGCAAAGA-GGGCAGTTTTAGACACCCATTTTGTCGTTTGTATTTTTTA
927298 TAATTATTTAATATTAAATATTGATGTTATTTAATTTC
129 TAATTATTTAATATTAAATATTGATGTTATTTAATTTC
927336 TTATTTTCTG
Statistics
Matches: 164, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
186 13 0.08
187 74 0.45
188 39 0.24
189 38 0.23
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (188 bp):
GACAACATCATAATGAAACCGGACAAAAATGCATTATCTTTTTTTATTTATCTTTCCCTATTCTT
GTTAACACAAGCATGGGCAAAGAGGGCAGTTTTAGACACCCATTTTGTCGTTTGTATTTTTTATA
ATTATTTAATATTAAATATTGATGTTATTTAATTTCGTCATCTGTTAGTCTCACTTGA
Found at i:930920 original size:19 final size:19
Alignment explanation
Indices: 930898--930938 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
930888 GAAATGTAAA
*
930898 AAAATTACAA-ATAAAATGT
1 AAAATTAAAATATAAAAT-T
930917 AAAATTAAAATATAAAATT
1 AAAATTAAAATATAAAATT
930936 AAA
1 AAA
930939 CACACACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAATTAAAATATAAAATT
Found at i:930925 original size:13 final size:13
Alignment explanation
Indices: 930909--930938 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
930899 AAATTACAAA
*
930909 TAAAATGTAAAAT
1 TAAAATATAAAAT
930922 TAAAATATAAAAT
1 TAAAATATAAAAT
930935 TAAA
1 TAAA
930939 CACACACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
TAAAATATAAAAT
Found at i:931386 original size:2 final size:2
Alignment explanation
Indices: 931342--931377 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
931332 ATAAACCATG
931342 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
931378 AACTATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:931463 original size:48 final size:49
Alignment explanation
Indices: 931370--931464 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 49
931360 TATATATATA
* * **
931370 TATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACAC
1 TATACATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAACAC
*
931419 TATACATAAACTATATAAAGT-AGTAAAATATATAGTTTATAGAAAC
1 TATACATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAAC
931465 CTTAAATCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 21 0.51
49 20 0.49
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (49 bp):
TATACATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAACAC
Found at i:931476 original size:49 final size:49
Alignment explanation
Indices: 931375--931478 Score: 131
Period size: 48 Copynumber: 2.1 Consensus size: 49
931365 ATATATATAT
* ** *
931375 ATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATAC
1 ATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAACACTAAAC
*
931424 ATAAACTATATAAAGT-AGTAAAATATATAGTTTATAGAAAC-CTTAAATC
1 ATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAACAC-TAAA-C
931473 ATAAAC
1 ATAAAC
931479 CCTAATTCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.02
48 24 0.50
49 23 0.48
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.33
Consensus pattern (49 bp):
ATAAACTATATAAAGTAAATAAAATATATAGTTTATAGAAACACTAAAC
Found at i:931518 original size:21 final size:20
Alignment explanation
Indices: 931467--931525 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
931457 ATAGAAACCT
* * *
931467 TAAATCATAAACCCTAATTC
1 TAAACCATAAACCATAATAC
**
931487 TAAACTTTAAACCATAAATAC
1 TAAACCATAAACCAT-AATAC
*
931508 TAAACCATAAACCCTAAT
1 TAAACCATAAACCATAAT
931526 TTAAATGGAC
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAACCATAAACCATAATAC
Found at i:931841 original size:23 final size:20
Alignment explanation
Indices: 931815--931865 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
931805 ATTAATCATG
931815 TTTTATAATTTACATTTAAATAA
1 TTTTATAATTT-CA-TTAAAT-A
*
931838 TTTTATTAATTTTATTAAATA
1 TTTTA-TAATTTCATTAAATA
931859 TTTTATA
1 TTTTATA
931866 TAATATGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.08
21 6 0.23
22 6 0.23
23 6 0.23
24 6 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTATAATTTCATTAAATA
Found at i:931895 original size:2 final size:2
Alignment explanation
Indices: 931888--931947 Score: 95
Period size: 2 Copynumber: 30.0 Consensus size: 2
931878 ATAAACCTAG
*
931888 TA TA TA TA TA TA AA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
931931 TA TA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
931948 AAGTAAATTA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
1 1 0.02
2 52 0.96
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:932058 original size:21 final size:21
Alignment explanation
Indices: 932034--932092 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
932024 ACTTAAATCA
*
932034 TAAACCATAAACCCTAAACT-T
1 TAAACCATAAACCCTAAA-TAC
* *
932055 TAAACCACAAACACTAAATAC
1 TAAACCATAAACCCTAAATAC
*
932076 TAAATCATAAACCCTAA
1 TAAACCATAAACCCTAA
932093 TGTAAATGGA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCATAAACCCTAAATAC
Found at i:932310 original size:568 final size:553
Alignment explanation
Indices: 930977--933223 Score: 2316
Period size: 568 Copynumber: 4.1 Consensus size: 553
930967 ATAAATTTAA
** * * * * *
930977 AATGTAAAAAGACTATCACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTACATTGGGCCT
1 AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCACTGAGCCT
* * * **
931042 ATCTAAATTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTTTTGGGTTTTATTATTAC
66 ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
* * * * *
931107 TTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAATCTAACATGCAACTAAAATACT
131 TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
* * * * *
931172 AATTATGCAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATAAGGAATGTGA
196 AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
931237 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATT-
261 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
* * * *
931301 AAT-TTTATTA-AATAAT-T-T-TAT--A-TATGTAT-GTATA-AACCATGTATATATATATATA
326 AATATTTTTTATAAT-ATGTATGTATAAACCATGTATAATATATAA--A-CTATATATATATATA
*
931356 TATATATATATATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTA
387 TATATATATATATATATATATAAACTATATAAAGTAAATTACTTAGATAGTTTATAGAAACACTA
* * **
931421 TACATAAACTATATAAAGTAGTAAAATATATAGTTTATAGAAACCTTAAATCATAAACCCTAATT
452 TACATAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAACCTTAAATCATAAACCATAACC
931486 CTAAACTTTAAACCATAAATACTAAACCATAAACCCT
517 CTAAACTTTAAACCATAAATACTAAACCATAAACCCT
* *
931523 AATTTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCATTGAGCCT
1 AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCACTGAGCCT
931588 ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
66 ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
* *
931653 TTATTCATACCAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAATACA
131 TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
*
931718 AATTATGCAATTTAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGA
196 AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
931783 CATACTAATTATTTAACACCTAATTAATCATG-TTT-TATAATTTACATTTAAATAATTTTATTA
261 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
931846 ATTTTATTAAATATTTTATATAATATGTATGTATAAACC-TAGTATATATATATAAACTATATAT
326 A----A-T--AT-TTTT-TATAATATGTATGTATAAACCAT-GTATA-ATATATAAACTATATAT
931910 ATATATATATATATATATATATATATATAATA-TATATAAAGTAAATTACTTAGATAGTTTATAG
380 ATATATATATATATATATATATATATATAA-ACTATATAAAGTAAATTACTTAGATAGTTTATAG
931974 AAACACTATACATAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAA-CTTAAATCATAAA
444 AAACACTATACATAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAACCTTAAATCATAAA
*
932038 CCATAAACCCTAAACTTTAAACCACAAACACTAAATACTAAATCATAAACCCT
509 CCAT-AACCCTAAACTTT-AA--AC---CA-TAAATACTAAACCATAAACCCT
* * * *
932091 AATGTAAATGGACTAGCACTATTGCATATATATTTGTAATAAAAGAGTGGGCTTGCACTGGGCCT
1 AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCACTGAGCCT
* *
932156 ATGTAAACTAATGTTAATGGACTAGCACTATTGCAAATTGACTTATTTTTTAGTTTTATTATTAC
66 ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
932221 TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
131 TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
932286 AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
196 AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
932351 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
261 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
* * *
932416 AATATTTTTTATAATATGTATGTATAAACCATGTATAGTATATAAACTATAAAGTAAATTACTAT
326 AATATTTTTTATAATATGTATGTATAAACCATGTATAATATATAAACTATATA-TATA-TA-TAT
* * * * ** * *
932481 ATAGTTTATAGAAACACTATGCATAAACTATATAAAGT-AA-TAAATATATAGTTTATAGAAACC
388 ATA-TATATATATATA-TAT--ATAAACTATATAAAGTAAATTACTTAGATAGTTTATAGAAACA
* * * *** * * * *
932544 CTAAACCTAAA-T-CATAAA-CCCT-AATTCTAAA-CTT-T--AAACCATAAAT-ACTAAACCAT
449 CTATACATAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAACCTTAAATCA-TAAACCAT
*** ** ** ****
932600 AAACCCT-AA-TTTGAATGGACT-AGCACTAATGCATATATTTGT
513 -AACCCTAAACTTT-AAACCA-TAAATACTAAACCATA-AACCCT
* * *** ***** * * ** * *
932642 AA--TAAA-AGAGT-GGGCT--TGCAT-TGGGCCTAT-GTAAACTAAT--G-TT--AATG-GACT
1 AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCACTGAGCCT
* * ** ***
932693 A-G--CACTATTGCAAATGGACT-----TATT-----T----TTGGGTTTTA---TTATTA---C
66 ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
* *
932735 TTATTCATAACAACAAAATAAATGAGTCATTAATGTGAATTAACCTAACATGCAACTAAAATACA
131 TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
*
932800 AATTATGCAATTTAAATTAATATGACATGTACTACTATTTATGAACC--ATAATATGCAATGTGA
196 AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
*
932863 CATACTAATTATTTAACACCTCATTAATCATGTTTTATATAATTTA-ATTTAAAT-A--TTA-T-
261 CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
* * * * * *
932922 -A-ATTTATTA-AATAAT-T-T-TATATAA-TATG--T-ATGTATAAACCATGTATA-GTATATA
326 AATATTTTTTATAAT-ATGTATGTATA-AACCATGTATAATATATAAACTATATATATATATATA
* * *
932976 TA-A-A-CTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATG
389 TATATATATATATATATATAAACTATATAAAGTAAATTACTTAGATAGTTTATAGAAACACTATA
* * * * * *
933038 CATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATCATAACCCT
454 CATAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAACCTTAAATCATAAACCATAA-CC-
* * *
933103 AATTCTAAACTTTAAACTATAAACACTAAACCATAAATCCT
517 ----CTAAACTTTAAACCATAAATACTAAACCATAAACCCT
* * * * *
933144 AATTTAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTATGTATTG-GC
1 AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGC-T-TGCACTGAGC
*
933208 CTTTGTAAACTAATGT
64 CTATGTAAACTAATGT
933224 ATTTCCAAAA
Statistics
Matches: 1454, Mismatches: 162, Indels: 196
0.80 0.09 0.11
Matches are distributed among these distances:
487 16 0.01
488 2 0.00
489 31 0.02
490 4 0.00
491 6 0.00
492 1 0.00
493 6 0.00
494 8 0.01
495 3 0.00
496 2 0.00
497 20 0.01
498 11 0.01
499 1 0.00
501 7 0.00
502 11 0.01
503 20 0.01
504 16 0.01
505 4 0.00
506 3 0.00
507 1 0.00
508 8 0.01
509 3 0.00
510 7 0.00
511 8 0.01
512 62 0.04
514 111 0.08
515 1 0.00
517 12 0.01
518 1 0.00
520 13 0.01
524 1 0.00
529 4 0.00
534 14 0.01
536 1 0.00
537 4 0.00
538 3 0.00
540 2 0.00
541 1 0.00
543 6 0.00
544 30 0.02
545 9 0.01
546 271 0.19
547 3 0.00
548 3 0.00
549 5 0.00
550 11 0.01
551 7 0.00
553 1 0.00
554 3 0.00
555 4 0.00
556 9 0.01
557 7 0.00
558 24 0.02
559 1 0.00
560 34 0.02
561 169 0.12
562 12 0.01
563 17 0.01
564 13 0.01
565 32 0.02
566 4 0.00
567 16 0.01
568 302 0.21
569 3 0.00
570 29 0.02
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (553 bp):
AATGTAAATGGACTAACACTAATGCATATATATTTGTAATAAAAGAATGGGCTTGCACTGAGCCT
ATGTAAACTAATGTTAATGGACTAGCAATATTGCAAATGGACTTATTTTTTAGTTTTATTATTAC
TTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAACACA
AATTATGCAATTTAAATTAATATGACATGAACTACTATTTATGAACCATATAATATGCAATGTGA
CATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTA
AATATTTTTTATAATATGTATGTATAAACCATGTATAATATATAAACTATATATATATATATATA
TATATATATATATATATAAACTATATAAAGTAAATTACTTAGATAGTTTATAGAAACACTATACA
TAAACTATATAAAGTAGTAAAATATAAAGTTTATAGAAACCTTAAATCATAAACCATAACCCTAA
ACTTTAAACCATAAATACTAAACCATAAACCCT
Found at i:932564 original size:20 final size:19
Alignment explanation
Indices: 932539--932608 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
932529 TAGTTTATAG
*
932539 AAACCCTAAACCTAAATCAT
1 AAACCCTAAAACTAAA-CAT
** *
932559 AAACCCTAATTCTAAACTTT
1 AAACCCTAAAACTAAAC-AT
*
932579 AAACCATAAATACTAAACCAT
1 AAACCCTAAA-ACTAAA-CAT
932600 AAACCCTAA
1 AAACCCTAA
932609 TTTGAATGGA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.03
20 23 0.59
21 14 0.36
22 1 0.03
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (19 bp):
AAACCCTAAAACTAAACAT
Found at i:932602 original size:21 final size:20
Alignment explanation
Indices: 932550--932609 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 20
932540 AACCCTAAAC
* * *
932550 CTAAATCATAAACCCTAATT
1 CTAAACCATAAACCATAATA
**
932570 CTAAACTTTAAACCATAAATA
1 CTAAACCATAAACCAT-AATA
*
932591 CTAAACCATAAACCCTAAT
1 CTAAACCATAAACCATAAT
932610 TTGAATGGAC
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (20 bp):
CTAAACCATAAACCATAATA
Found at i:932608 original size:14 final size:14
Alignment explanation
Indices: 932539--932608 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 14
932529 TAGTTTATAG
*
932539 AAACCCTAAA-CCT
1 AAACCATAAACCCT
*
932552 AAATCATAAACCCT
1 AAACCATAAACCCT
** **
932566 AATTC-TAAACTTT
1 AAACCATAAACCCT
**
932579 AAACCATAAATACT
1 AAACCATAAACCCT
932593 AAACCATAAACCCT
1 AAACCATAAACCCT
932607 AA
1 AA
932609 TTTGAATGGA
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
13 17 0.40
14 26 0.60
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCATAAACCCT
Found at i:932742 original size:514 final size:520
Alignment explanation
Indices: 931927--933223 Score: 1947
Period size: 514 Copynumber: 2.5 Consensus size: 520
931917 TATATATATA
* * * *
931927 TATATATATATAATATATATAAAGTAAATTACTTAGATAGTTTATAGAAACACTATACATAAACT
1 TATAGATATATAA-ACATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGCATAAACT
* * * * * *
931992 ATATAAAGTAGTAAAATATAAAGTTTATAGAAA-CTTAAATCATAAACCATAAACCCTAAACTT-
65 ATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATCATAAACCCT-AA-TTC
*** * * *
932055 TAAACCACAAA-CACTAAATACTAAATCATAAACCCTAATGTAAATGGACTAGCACTATTGCATA
128 TAAACTTTAAACCA-TAAATACTAAACCATAAACCCTAATTTAAATGGACTAGCACTAATGCA-A
*
932119 TATATTTGTAATAAAAGAGTGGGCTTGCACTGGGCCTATGTAAACTAATGTTAATGGACTAGCAC
191 TATATTTGTAATAAAAGAGTGGGCTTGCATTGGGCCTATGTAAACTAATGTTAATGGACTAGCAC
* *
932184 TATTGCAAATTGACTTATTTTTTAGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCC
256 TATTGCAAATGGACTTATTTTTGAGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCC
932249 ATTAATGTGAATTAACCTAACATGCAACTAAAACACAAATTATGCAATTTAAATTAATATGACAT
321 ATTAATGTGAATTAACCTAACATGCAACTAAAACACAAATTATGCAATTTAAATTAATATGACAT
932314 GAACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAAT
386 GAACTACTATTTATGAACC--ATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAAT
*
932379 CATGTTTTATATAATTTACATTTAAATA-AT-TTTATTAAAT-ATTTTTTATAATATGTATGTAT
449 CATGTTTTATATAATTTA-ATTTAAATATATATTTATTAAATAATTTTATATAATATGTATGTAT
932441 AAACCATG
513 AAACCATG
932449 TATAG-TATATAAAC-TATAAAGTAAATTAC-TATATAGTTTATAGAAACACTATGCATAAACTA
1 TATAGATATATAAACATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTA
932511 TATAAAGTAAT-AAATATATAGTTTATAGAAACCCTAAA-CCTAAATCATAAACCCTAATTCTAA
66 TATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATCATAAACCCTAATTCTAA
*
932574 ACTTTAAACCATAAATACTAAACCATAAACCCTAATTTGAATGGACTAGCACTAATGC-ATATAT
131 ACTTTAAACCATAAATACTAAACCATAAACCCTAATTTAAATGGACTAGCACTAATGCAATATAT
932638 TTGTAATAAAAGAGTGGGCTTGCATTGGGCCTATGTAAACTAATGTTAATGGACTAGCACTATTG
196 TTGTAATAAAAGAGTGGGCTTGCATTGGGCCTATGTAAACTAATGTTAATGGACTAGCACTATTG
* *
932703 CAAATGGACTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGTCATTAA
261 CAAATGGACTTATTTTTGAGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAA
* *
932768 TGTGAATTAACCTAACATGCAACTAAAATACAAATTATGCAATTTAAATTAATATGACATGTACT
326 TGTGAATTAACCTAACATGCAACTAAAACACAAATTATGCAATTTAAATTAATATGACATGAACT
*
932833 ACTATTTATGAACCATAATATGCAATGTGACATACTAATTATTTAACACCTCATTAATCATGTTT
391 ACTATTTATGAACCATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTT
932898 TATATAATTTAATTTAAATATTATAATTTATTAAATAATTTTATATAATATGTATGTATAAACCA
456 TATATAATTTAATTTAAATA-TAT-ATTTATTAAATAATTTTATATAATATGTATGTATAAACCA
932963 TG
519 TG
932965 TATAGTATATATAAACTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAA
1 TATAG----------------ATATATAAAC-ATATAAAGTAAATTACTTATATAGTTTATAGAA
933030 ACACTATGCATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATC
49 ACACTATGCATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATC
* * *
933095 AT-AACCCTAATTCTAAACTTTAAACTATAAACACTAAACCATAAATCCTAATTTAAATGGACTA
114 ATAAACCCTAATTCTAAACTTTAAACCATAAATACTAAACCATAAACCCTAATTTAAATGGACTA
* *
933159 GCACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTATGTATT-GGCCTTTGTAAACTAATG
179 GCACTAATGCA-ATATATTTGTAATAAAAGAGTGGGC-T-TGCATTGGGCCTATGTAAACTAATG
933223 T
241 T
933224 ATTTCCAAAA
Statistics
Matches: 710, Mismatches: 31, Indels: 50
0.90 0.04 0.06
Matches are distributed among these distances:
511 9 0.01
512 61 0.09
513 2 0.00
514 208 0.29
515 12 0.02
516 87 0.12
517 36 0.05
518 46 0.06
519 15 0.02
520 1 0.00
521 7 0.01
522 4 0.01
533 9 0.01
535 15 0.02
536 44 0.06
537 95 0.13
538 10 0.01
539 25 0.04
540 19 0.03
541 5 0.01
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (520 bp):
TATAGATATATAAACATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTA
TATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCCTAAATCATAAACCCTAATTCTAA
ACTTTAAACCATAAATACTAAACCATAAACCCTAATTTAAATGGACTAGCACTAATGCAATATAT
TTGTAATAAAAGAGTGGGCTTGCATTGGGCCTATGTAAACTAATGTTAATGGACTAGCACTATTG
CAAATGGACTTATTTTTGAGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAA
TGTGAATTAACCTAACATGCAACTAAAACACAAATTATGCAATTTAAATTAATATGACATGAACT
ACTATTTATGAACCATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTT
TATATAATTTAATTTAAATATATATTTATTAAATAATTTTATATAATATGTATGTATAAACCATG
Found at i:932990 original size:15 final size:15
Alignment explanation
Indices: 932965--933001 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
932955 ATAAACCATG
932965 TATAGTATATATAAAC
1 TATA-TATATATAAAC
932981 TATATATATATAAAC
1 TATATATATATAAAC
932996 TATATA
1 TATATA
933002 AAGTAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:933327 original size:14 final size:14
Alignment explanation
Indices: 933308--933354 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
933298 TATTTGTCAT
933308 TATATAAATTAAAC
1 TATATAAATTAAAC
933322 TATAT-AATT----
1 TATATAAATTAAAC
933331 TATATAAATTAAAC
1 TATATAAATTAAAC
*
933345 TATATTAATT
1 TATATAAATT
933355 TCCTTTGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:933334 original size:23 final size:24
Alignment explanation
Indices: 933307--933355 Score: 91
Period size: 23 Copynumber: 2.1 Consensus size: 24
933297 TTATTTGTCA
933307 TTATATAAATTAAACTATA-TAAT
1 TTATATAAATTAAACTATATTAAT
933330 TTATATAAATTAAACTATATTAAT
1 TTATATAAATTAAACTATATTAAT
933354 TT
1 TT
933356 CCTTTGCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATATAAATTAAACTATATTAAT
Found at i:933407 original size:11 final size:11
Alignment explanation
Indices: 933391--933424 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
933381 TCTAATTTAC
933391 TTTTAAATAAT
1 TTTTAAATAAT
933402 TTTTAAAT--T
1 TTTTAAATAAT
933411 TTTTAAATAAT
1 TTTTAAATAAT
933422 TTT
1 TTT
933425 ATATAATAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAATAAT
Found at i:933638 original size:16 final size:16
Alignment explanation
Indices: 933617--933703 Score: 147
Period size: 16 Copynumber: 5.4 Consensus size: 16
933607 TGGATCATTT
933617 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
933633 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
*
933649 ACAGGTCAGGTTAAAA
1 ACAGGTCAGGTTGAAA
*
933665 ACAAGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
933681 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
*
933697 ATAGGTC
1 ACAGGTC
933704 GGGTAATACC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 66 1.00
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.20
Consensus pattern (16 bp):
ACAGGTCAGGTTGAAA
Found at i:934913 original size:15 final size:15
Alignment explanation
Indices: 934893--934943 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
934883 ATATAATATA
934893 GAGAGGAACAAATTC
1 GAGAGGAACAAATTC
* *
934908 GAGAGGAA-ATA-TA
1 GAGAGGAACAAATTC
934921 GAGAGGAACAAATTC
1 GAGAGGAACAAATTC
934936 GAGAGGAA
1 GAGAGGAA
934944 ACTATGGGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 9 0.30
14 4 0.13
15 17 0.57
ACGTcount: A:0.49, C:0.08, G:0.31, T:0.12
Consensus pattern (15 bp):
GAGAGGAACAAATTC
Found at i:934918 original size:28 final size:28
Alignment explanation
Indices: 934887--934944 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
934877 AATACAATAT
934887 AATATAGAGAGGAACAAATTCGAGAGGA
1 AATATAGAGAGGAACAAATTCGAGAGGA
934915 AATATAGAGAGGAACAAATTCGAGAGGA
1 AATATAGAGAGGAACAAATTCGAGAGGA
934943 AA
1 AA
934945 CTATGGGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.52, C:0.07, G:0.28, T:0.14
Consensus pattern (28 bp):
AATATAGAGAGGAACAAATTCGAGAGGA
Found at i:939806 original size:17 final size:17
Alignment explanation
Indices: 939776--939809 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
939766 AAAATAGAAT
939776 ATGAAAGAAGAAGGAAA
1 ATGAAAGAAGAAGGAAA
939793 ATGATAAGAA-AAGGAAA
1 ATGA-AAGAAGAAGGAAA
939810 GGGATAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (17 bp):
ATGAAAGAAGAAGGAAA
Found at i:941172 original size:20 final size:21
Alignment explanation
Indices: 941134--941172 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
941124 GATCATCTAG
* *
941134 AAGCTAAGATAACATGTATAT
1 AAGCTAAGATAAAAGGTATAT
941155 AAGCT-AGATAAAAGGTAT
1 AAGCTAAGATAAAAGGTAT
941173 TGGACGTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (21 bp):
AAGCTAAGATAAAAGGTATAT
Found at i:943291 original size:26 final size:27
Alignment explanation
Indices: 943237--943293 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
943227 CGTGAACGCT
*
943237 AAATAAACTGAATAAAAATATATTCAA
1 AAATAAACTAAATAAAAATATATTCAA
*
943264 AAATAAA-TAAATAAACATAATATT-AA
1 AAATAAACTAAATAAAAAT-ATATTCAA
943290 AAAT
1 AAAT
943294 TAAAGCAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAAACTAAATAAAAATATATTCAA
Found at i:943736 original size:22 final size:24
Alignment explanation
Indices: 943698--943748 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
943688 AAATTTTAAA
*
943698 TTTATATATGTTTTAAAT-ATTTT
1 TTTATATATGTTTTAAATCATATT
*
943721 TTTATA-ATTTTTTAAATCATATT
1 TTTATATATGTTTTAAATCATATT
943744 TTTAT
1 TTTAT
943749 CCTCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTATATATGTTTTAAATCATATT
Found at i:946521 original size:21 final size:21
Alignment explanation
Indices: 946491--946537 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
946481 CAAATATATG
* *
946491 TAAAATTAAATATAAAAATAC
1 TAAAAGTAAAAATAAAAATAC
*
946512 TAAAAGTAAAAATAAAATTAC
1 TAAAAGTAAAAATAAAAATAC
*
946533 CAAAA
1 TAAAA
946538 AAATAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.68, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAAAGTAAAAATAAAAATAC
Found at i:946583 original size:20 final size:22
Alignment explanation
Indices: 946542--946593 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 22
946532 CCAAAAAAAT
946542 AAATATATATTAAAATACTAAA
1 AAATATATATTAAAATACTAAA
*
946564 AAATAT-TATTAAAA-ATTAAA
1 AAATATATATTAAAATACTAAA
946584 AAATATATAT
1 AAATATATAT
946594 ATATATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 11 0.39
21 11 0.39
22 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATATATATTAAAATACTAAA
Found at i:946603 original size:22 final size:21
Alignment explanation
Indices: 946542--946607 Score: 80
Period size: 22 Copynumber: 3.1 Consensus size: 21
946532 CCAAAAAAAT
*
946542 AAATATATATTAAAATACTAAA
1 AAATATATATT-AAATATTAAA
*
946564 AAATAT-TATTAAAAATTAAA
1 AAATATATATTAAATATTAAA
*
946584 AAATATATATATATATATTAAA
1 AAATATATAT-TAAATATTAAA
946606 AA
1 AA
946608 TACTAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.37
21 7 0.18
22 17 0.45
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATATATTAAATATTAAA
Found at i:946616 original size:30 final size:28
Alignment explanation
Indices: 946566--946623 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
946556 ATACTAAAAA
946566 ATATTATTAAAAATTAAAAAATATATAT
1 ATATTATTAAAAATTAAAAAATATATAT
946594 ATATATATTAAAAA-TACTAAAAATATATAT
1 ATAT-TATTAAAAATTA--AAAAATATATAT
946624 CATAAACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 6 0.22
29 9 0.33
30 12 0.44
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
ATATTATTAAAAATTAAAAAATATATAT
Found at i:946645 original size:30 final size:30
Alignment explanation
Indices: 946570--946637 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
946560 TAAAAAATAT
*
946570 TATTAAAAAT--TAAAAAATATATATATATA
1 TATTAAAAATACT-AAAAATATATATATAAA
946599 TATTAAAAATACTAAAAATATATATCATAAA
1 TATTAAAAATACTAAAAATATATAT-ATAAA
946630 CTA-TAAAA
1 -TATTAAAA
946638 TGATAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 10 0.29
30 12 0.35
31 10 0.29
32 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (30 bp):
TATTAAAAATACTAAAAATATATATATAAA
Found at i:951608 original size:2 final size:2
Alignment explanation
Indices: 951545--951590 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
951535 AATGAATGAA
951545 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
951587 AT AT
1 AT AT
951591 TTAATTATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:953008 original size:24 final size:24
Alignment explanation
Indices: 952981--953050 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
952971 ACGAAGATAT
952981 CAGAAATCAAAACAGAATTCAGAC
1 CAGAAATCAAAACAGAATTCAGAC
* * * * *
953005 CAGATATCATAACATAATCCAGAT
1 CAGAAATCAAAACAGAATTCAGAC
*
953029 CATAAATCAGAAA-AGAATTCAG
1 CAGAAATCA-AAACAGAATTCAG
953051 GTCATGTATC
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
24 33 0.94
25 2 0.06
ACGTcount: A:0.51, C:0.19, G:0.11, T:0.19
Consensus pattern (24 bp):
CAGAAATCAAAACAGAATTCAGAC
Found at i:953055 original size:24 final size:24
Alignment explanation
Indices: 953028--953073 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
953018 ATAATCCAGA
953028 TCATAAATCAGAAAAGAATTCAGG
1 TCATAAATCAGAAAAGAATTCAGG
** *
953052 TCATGTATCAGAACAGAATTCA
1 TCATAAATCAGAAAAGAATTCA
953074 AATCGGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (24 bp):
TCATAAATCAGAAAAGAATTCAGG
Found at i:957671 original size:87 final size:87
Alignment explanation
Indices: 957578--957738 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 87
957568 CTTCTTTAGG
* * ** * * *
957578 GTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCATCAGGGAATATTGAATTGAGGCATA
1 GTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCATCAAGGAATATTGAATCGAGGCAGA
957643 TTTGTTCCACTACTTCTTCAAA
66 TTTGTTCCACTACTTCTTCAAA
*
957665 GTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCTTCAAGGAATATTGAATCGAGGCAGA
1 GTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCATCAAGGAATATTGAATCGAGGCAGA
957730 TTTGTTCCA
66 TTTGTTCCA
957739 ATGTTCCTCG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (87 bp):
GTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCATCAAGGAATATTGAATCGAGGCAGA
TTTGTTCCACTACTTCTTCAAA
Found at i:957992 original size:133 final size:133
Alignment explanation
Indices: 957648--958569 Score: 940
Period size: 133 Copynumber: 6.9 Consensus size: 133
957638 GCATATTTGT
* ** * * ** *
957648 TCCACTACTTCTTCAAAGTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCTTCAAGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * * * *
957713 TATTGAATCGAGGCAGATTTGTTCCAATGTTCCTCGGGGAAGATCAAATC-CGAAAAAAGGGACC
66 TATTGAATCGAGGCAGACTTGTTCCACTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGATC
957777 TGC
131 TGC
* * * * * *
957780 TCCACTGCTTCTTCAAGGTATATCAAATCTGAAAATGTTGATTCATTCCACTGTTCTTTAGGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * **
957845 TATTGAATCGAGGCAGACTTGTTCCACTGTTCCTCAAGGAATATCAAATCTGGAAAATGGGGATC
66 TATTGAATCGAGGCAGACTTGTTCCACTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGATC
*
957910 TAC
131 TGC
* * * * * * *
957913 TCCGCTGCTTCTTTAGGGTAGATCAGATCTAGAAACGTTGATTTATTCCATTATTCTTCAGGGGA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* *
957978 TATTGAATCAAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTAGAAAAAAAAGGG
66 TATTGAATCGAGGCAGACTTGTTCCAC-TCTTCTTCAGGGAAGATCAAATCT-G-GAAAAAAGGG
*
958043 ATTTGC
128 ATCTGC
* * * * * *
958049 TCCGCTGCTTCTTCAGGGTAGATCATATATGGAAATGTTGATTCATTCCACTATTCTTCAGTGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * **
958114 GATTGAATCGAGGTAGACTTATTCCACTTCTTCTTCAAGGAAGATCAAATCTGGAAAACTGGGAT
66 TATTGAATCGAGGCAGACTTGTTCCAC-TCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
*
958179 CTAC
130 CTGC
* * * * * * * *
958183 TTCACTACTTCTTCAGGGTAGATCATATCTGGAAGCATTGATTTATTTCACTGTTCTTCAAGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * *
958248 GATTGAATCGAGGCAGACTTGTTCCATTACTTATTTAGGGAAGATCAAATCT-AAAAAAAGGGAT
66 TATTGAATCGAGGCAGACTTGTTCCACT-CTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
* *
958312 TTTC
130 CTGC
* * * * * ** **
958316 TCTACTGCTTCTTCAGGGTAAACCGGATATGGAAATATTGATTTGTTCCACTGTTCTTCAGGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
*
958381 TATTGAATCGAGGTAGACTTGTTCCACTACTTCTTCAGGGAAGATCAAATCTGG-AAAAAGAGGA
66 TATTGAATCGAGGCAGACTTGTTCCACT-CTTCTTCAGGGAAGATCAAATCTGGAAAAAAG-GGA
958445 TCTGC
129 TCTGC
* * * * *
958450 TCTATTGCTTCTTCAGGGTAAATCAGA-CTTGGAAACGTTGATTAATTTCACTGTTCTTCAGGGA
1 TCCACTGCTTCTTCAGGGTAGATCAGATC-TGGAAACGTTGATTCATTCCACTGTTCTTCAGGGA
* * * * *
958514 AGATTGAATCGAGGCAGACTTATTCCTCT-TGTCTTCA-AGAATATCAAATCT-GAAAA
65 ATATTGAATCGAGGCAGACTTGTTCCACTCT-TCTTCAGGGAAGATCAAATCTGGAAAA
958570 TTAAACATTA
Statistics
Matches: 657, Mismatches: 123, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
131 1 0.00
132 114 0.17
133 213 0.32
134 213 0.32
135 2 0.00
136 114 0.17
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (133 bp):
TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
TATTGAATCGAGGCAGACTTGTTCCACTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGATC
TGC
Found at i:958249 original size:134 final size:134
Alignment explanation
Indices: 957648--958569 Score: 946
Period size: 134 Copynumber: 6.9 Consensus size: 134
957638 GCATATTTGT
* ** * * ** *
957648 TCCACTACTTCTTCAAAGTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCTTCAAGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * * * *
957713 TATTGAATCGAGGCAGATTTGTTCCA-ATGTTCCTCGGGGAAGATCAAATC-CGAAAAAAGGGAC
66 TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
957776 CTGC
131 CTGC
* * * * * *
957780 TCCACTGCTTCTTCAAGGTATATCAAATCTGAAAATGTTGATTCATTCCACTGTTCTTTAGGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * **
957845 TATTGAATCGAGGCAGACTTGTTCCAC-TGTTCCTCAAGGAATATCAAATCTGGAAAATGGGGAT
66 TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
*
957909 CTAC
131 CTGC
* * * * * * *
957913 TCCGCTGCTTCTTTAGGGTAGATCAGATCTAGAAACGTTGATTTATTCCATTATTCTTCAGGGGA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* *
957978 TATTGAATCAAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTAGAAAAAAAAGGG
66 TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCT-G-GAAAAAAGGG
*
958043 ATTTGC
129 ATCTGC
* * * * * *
958049 TCCGCTGCTTCTTCAGGGTAGATCATATATGGAAATGTTGATTCATTCCACTATTCTTCAGTGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * * **
958114 GATTGAATCGAGGTAGACTTATTCCACTTCTTCTTCAAGGAAGATCAAATCTGGAAAACTGGGAT
66 TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
*
958179 CTAC
131 CTGC
* * * * * * * *
958183 TTCACTACTTCTTCAGGGTAGATCATATCTGGAAGCATTGATTTATTTCACTGTTCTTCAAGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * *
958248 GATTGAATCGAGGCAGACTTGTTCCA-TTACTTATTTAGGGAAGATCAAATCT-AAAAAAAGGGA
66 TATTGAATCGAGGCAGACTTGTTCCACTT-CTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGA
* *
958311 TTTTC
130 TCTGC
* * * * * ** **
958316 TCTACTGCTTCTTCAGGGTAAACCGGATATGGAAATATTGATTTGTTCCACTGTTCTTCAGGGAA
1 TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
* *
958381 TATTGAATCGAGGTAGACTTGTTCCACTACTTCTTCAGGGAAGATCAAATCTGG-AAAAAGAGGA
66 TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAG-GGA
958445 TCTGC
130 TCTGC
* * * * *
958450 TCTATTGCTTCTTCAGGGTAAATCAGA-CTTGGAAACGTTGATTAATTTCACTGTTCTTCAGGGA
1 TCCACTGCTTCTTCAGGGTAGATCAGATC-TGGAAACGTTGATTCATTCCACTGTTCTTCAGGGA
* * * * * *
958514 AGATTGAATCGAGGCAGACTTATTCCTCTT-GTCTTCA-AGAATATCAAATCT-GAAAA
65 ATATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAA
958570 TTAAACATTA
Statistics
Matches: 656, Mismatches: 123, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
131 1 0.00
132 113 0.17
133 212 0.32
134 214 0.33
135 2 0.00
136 114 0.17
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (134 bp):
TCCACTGCTTCTTCAGGGTAGATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAA
TATTGAATCGAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTGGAAAAAAGGGAT
CTGC
Found at i:958431 original size:267 final size:264
Alignment explanation
Indices: 957650--958539 Score: 1046
Period size: 267 Copynumber: 3.3 Consensus size: 264
957640 ATATTTGTTC
** * * *
957650 CACTACTTCTTCAAAGTAGATCAGATCTAGAAACATTGATTCATTCCACCATTCTTCAAGGAATA
1 CACTACTTCTTCAGGGTAGATCAGATCTAGAAACATTGATTTATTCCACTATTCTTCAAGGAAGA
* * * * * ** **
957715 TTGAATCGAGGCAGATTTGTTCCAATGTTCCTCGGGGAAGATCAAATCCGAAAAAAGGGACCTGC
66 TTGAATCGAGGCAGACTTGTTCCATTCTTCTTCAGGGAAGATCAAATCTAAAAAAAGGGATTTGC
* * * * *
957780 TCCACTGCTTCTTCAAGGTATATCAAATCTGAAAATGTTGATTCATTCCACTGTTCTTTAGGGAA
131 TCCACTGCTTCTTCAGGGTAAATCAAATATGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAA
* * * *
957845 TATTGAATCGAGGCAGACTTGTTCCACTGTTCCTCAAGGAATATCAAATCTGGAAAATGGGGATC
196 TATTGAATCGAGGTAGACTTGTTCCACTCTTCTTCAAGGAAGATCAAATCTGGAAAAT-GGGATC
*
957910 TACTC
260 TACTT
* * * * * * * *
957915 CGCTGCTTCTTTAGGGTAGATCAGATCTAGAAACGTTGATTTATTCCATTATTCTTCAGGGGATA
1 CACTACTTCTTCAGGGTAGATCAGATCTAGAAACATTGATTTATTCCACTATTCTTCAAGGAAGA
*
957980 TTGAATCAAGGCAGACTTGTTCCACTTCTTCTTCAGGGAAGATCAAATCTAGAAAAAAAAGGGAT
66 TTGAATCGAGGCAGACTTGTTCCA-TTCTTCTTCAGGGAAGATCAAATCT---AAAAAAAGGGAT
* * * *
958045 TTGCTCCGCTGCTTCTTCAGGGTAGATCATATATGGAAATGTTGATTCATTCCACTATTCTTCAG
127 TTGCTCCACTGCTTCTTCAGGGTAAATCAAATATGGAAATGTTGATTCATTCCACTGTTCTTCAG
* * *
958110 TGAAGATTGAATCGAGGTAGACTTATTCCACTTCTTCTTCAAGGAAGATCAAATCTGGAAAACTG
192 GGAATATTGAATCGAGGTAGACTTGTTCCAC-TCTTCTTCAAGGAAGATCAAATCTGGAAAA-TG
958175 GGATCTACTT
255 GGATCTACTT
* * * * *
958185 CACTACTTCTTCAGGGTAGATCATATCTGGAAGCATTGATTTATTTCACTGTTCTTCAAGGAAGA
1 CACTACTTCTTCAGGGTAGATCAGATCTAGAAACATTGATTTATTCCACTATTCTTCAAGGAAGA
* * *
958250 TTGAATCGAGGCAGACTTGTTCCATTACTTATTTAGGGAAGATCAAATCTAAAAAAAGGGATTTT
66 TTGAATCGAGGCAGACTTGTTCCATT-CTTCTTCAGGGAAGATCAAATCTAAAAAAAGGGATTTG
* * ** * **
958315 CTCTACTGCTTCTTCAGGGTAAACCGGATATGGAAATATTGATTTGTTCCACTGTTCTTCAGGGA
130 CTCCACTGCTTCTTCAGGGTAAATCAAATATGGAAATGTTGATTCATTCCACTGTTCTTCAGGGA
* *
958380 ATATTGAATCGAGGTAGACTTGTTCCACTACTTCTTCAGGGAAGATCAAATCTGGAAAAAGAGGA
195 ATATTGAATCGAGGTAGACTTGTTCCACT-CTTCTTCAAGGAAGATCAAATCTGGAAAATG-GGA
*
958445 TCTGC-T
258 TCTACTT
* * * * * * * * *
958451 CTATTGCTTCTTCAGGGTAAATCAGA-CTTGGAAACGTTGATTAATTTCACTGTTCTTCAGGGAA
1 C-ACTACTTCTTCAGGGTAGATCAGATC-TAGAAACATTGATTTATTCCACTATTCTTCAAGGAA
*
958515 GATTGAATCGAGGCAGACTTATTCC
64 GATTGAATCGAGGCAGACTTGTTCC
958540 TCTTGTCTTC
Statistics
Matches: 535, Mismatches: 79, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
265 76 0.14
266 25 0.05
267 205 0.38
269 95 0.18
270 133 0.25
271 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (264 bp):
CACTACTTCTTCAGGGTAGATCAGATCTAGAAACATTGATTTATTCCACTATTCTTCAAGGAAGA
TTGAATCGAGGCAGACTTGTTCCATTCTTCTTCAGGGAAGATCAAATCTAAAAAAAGGGATTTGC
TCCACTGCTTCTTCAGGGTAAATCAAATATGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAA
TATTGAATCGAGGTAGACTTGTTCCACTCTTCTTCAAGGAAGATCAAATCTGGAAAATGGGATCT
ACTT
Found at i:958788 original size:42 final size:42
Alignment explanation
Indices: 958728--958809 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
958718 AAAGACTTAT
* * *
958728 CATCTTGCTCTAAAGGCTTATAGATGACATGAAGGATTTAAG
1 CATCATGCTCAAAAGGCTTATAGATGACACGAAGGATTTAAG
*
958770 CATCATGCTCAAAAGGCTTATAGATGACCCGAAGGATTTA
1 CATCATGCTCAAAAGGCTTATAGATGACACGAAGGATTTA
958810 CTAAGTATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (42 bp):
CATCATGCTCAAAAGGCTTATAGATGACACGAAGGATTTAAG
Found at i:961109 original size:21 final size:19
Alignment explanation
Indices: 961076--961119 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
961066 ACTTTTCGTT
*
961076 TTTTCTTTCATCACTTATTTA
1 TTTTATTTCATCA-TT-TTTA
*
961097 TTTTATTTTATCATTTTTA
1 TTTTATTTCATCATTTTTA
961116 TTTT
1 TTTT
961120 GCTAACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 2 0.10
21 11 0.52
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTATTTCATCATTTTTA
Found at i:964156 original size:95 final size:88
Alignment explanation
Indices: 964045--964284 Score: 303
Period size: 95 Copynumber: 2.7 Consensus size: 88
964035 ATATTATTTA
* *
964045 TATACAATAAAGCTTGAGTTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGACTTTATGGATAAT
1 TATACAAT-AAGCTTGAGTTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTATGGATAAG
*
964110 ATTCAGCTAGCCTGATAAAGGTGATTAT
65 ATTCAGCTAACCTGATAAA-G-G--TAT
* *
964138 ACTATACAATAGAGCTTGAGCTGTCCCCCTA-AGGAAATTGGTTAAACGCCCCGGCTTTATGGAT
1 --TATACAATA-AGCTTGAGTTGTCCCTCTAGA-GAAATTGGTTAAACGCCCCGGCTTTATGGAT
964202 AAGATTCAGCTAACCTGATAAAGGTAT
62 AAGATTCAGCTAACCTGATAAAGGTAT
*
964229 T-TAC-AT-A--TTGAGTTGTCCCTCTAGAGTAATTGGTTAAACGCCCCGGCTTTATGGAT
1 TATACAATAAGCTTGAGTTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTATGGAT
964285 TCAGCTTGCC
Statistics
Matches: 134, Mismatches: 8, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
83 44 0.33
84 1 0.01
85 1 0.01
87 2 0.01
88 3 0.02
89 1 0.01
91 3 0.02
93 1 0.01
94 3 0.02
95 75 0.56
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (88 bp):
TATACAATAAGCTTGAGTTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTATGGATAAGA
TTCAGCTAACCTGATAAAGGTAT
Found at i:965634 original size:36 final size:37
Alignment explanation
Indices: 965580--965660 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 37
965570 TAATTTACTC
* *
965580 AAAACAAAGTGTTGTCTCTCTTGAGATAGTTTCTCTT
1 AAAACAAAGTGTTGTCTCTCTTGAGACAGTTTCCCTT
* *
965617 AAAACAAA-TTTTGTCTCTCTTGAGACGGTTTCCCTT
1 AAAACAAAGTGTTGTCTCTCTTGAGACAGTTTCCCTT
*
965653 GAAACAAA
1 AAAACAAA
965661 AACTTTGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 31 0.79
37 8 0.21
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (37 bp):
AAAACAAAGTGTTGTCTCTCTTGAGACAGTTTCCCTT
Found at i:965727 original size:66 final size:65
Alignment explanation
Indices: 965609--965917 Score: 345
Period size: 66 Copynumber: 4.6 Consensus size: 65
965599 CTTGAGATAG
*
965609 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAAACAAAAACTTTGAATTTG
1 TTTC-CTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAAACTTTGAATTTG
965674 T
65 T
* * * **
965675 TTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAATC-AAAATTTTGTCTCTC
1 TTTCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAAACTTTG--AAT-
965739 TTGAGACAT
62 TT--G---T
* *
965748 TTTCTCTTAAAACAAATTTTGTCTCTCTTGATACGGTTTCCCTTGAAACAAAAACTTTGAATTTG
1 TTTC-CTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAAACTTTGAATTTG
965813 T
65 T
* * **
965814 TTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAATAAAATA-TTTGAACCT
1 TTTCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA-ACTTTGAATTT
965878 GT
64 GT
* * *
965880 TTTCCTTAAAA-AAAATTTGTCTCCCGTGAGACAGTTTC
1 TTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTC
965918 TTTCAAAACA
Statistics
Matches: 207, Mismatches: 23, Indels: 28
0.80 0.09 0.11
Matches are distributed among these distances:
64 21 0.10
65 31 0.15
66 93 0.45
67 2 0.01
68 2 0.01
69 1 0.00
70 1 0.00
71 2 0.01
72 1 0.00
73 35 0.17
74 18 0.09
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (65 bp):
TTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAAACTTTGAATTTGT
Found at i:965732 original size:37 final size:37
Alignment explanation
Indices: 965673--965800 Score: 177
Period size: 37 Copynumber: 3.5 Consensus size: 37
965663 CTTTGAATTT
* *
965673 GTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACA
*
965710 GTTTCCCTTGAATCAAAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACA
* * * * *
965747 TTTTCTCTTAAAAC-AAATTTTGTCTCTCTTGATACG
1 GTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACA
965783 GTTTCCCTTGAAACAAAA
1 GTTTCCCTTGAAACAAAA
965801 ACTTTGAATT
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
36 31 0.40
37 47 0.60
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (37 bp):
GTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACA
Found at i:965867 original size:139 final size:140
Alignment explanation
Indices: 965591--965872 Score: 514
Period size: 139 Copynumber: 2.0 Consensus size: 140
965581 AAACAAAGTG
*
965591 TTGTCTCTCTTGAGATAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAA
1 TTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAA
965656 ACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGA
66 ACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGA
965721 ATCAAAAT-T
131 ATCAAAATAT
* *
965730 TTGTCTCTCTTGAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTTGATACGGTTTCCCTTGAA
1 TTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAA
965795 ACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGA
66 ACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTG-
965860 AAT-AAAATAT
130 AATCAAAATAT
965870 TTG
1 TTG
965873 AACCTGTTTT
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
139 131 0.95
140 7 0.05
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.41
Consensus pattern (140 bp):
TTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAA
ACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGA
ATCAAAATAT
Found at i:965928 original size:166 final size:168
Alignment explanation
Indices: 965702--966095 Score: 503
Period size: 166 Copynumber: 2.4 Consensus size: 168
965692 TTTGTCTCTC
* * * *
965702 TTGAGACA-GTTTCCCTTGAATCAAAATTTTGTCTCTCTTGAGACATTTTCTCTTAAAACAAATT
1 TTGA-ACATGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTAAAACAAATT
* **
965766 TTGTCTCTCTTGATACGGTTTCCCTTGAAACAAAAACTTTGAATTTGTTTTCCTTGAAACAAAGT
65 TTGTCTCTCTTGAGACGGTTTCCCTTGAAACAAAAACTTTGAACCTGTTTTCCTTGAAACAAA-T
* *
965831 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAATA-AAATAT
129 TTCGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATAT
* * *
965870 TTGAACCTGTTT-TCCTT-AAA-AAAAATTTGTCTCCCGTGAGACAGTTTCT-TTCAAAACAAAT
1 TTGAACATGTTTCT-CTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTT-AAAACAAAT
* * * *
965931 TTTGTCTCTCTTGAGACGGTTTCCTTTGAAGCAAAATCTTTGAACCTGTTTTCCTTTAAACAAAT
64 TTTGTCTCTCTTGAGACGGTTTCCCTTGAAACAAAAACTTTGAACCTGTTTTCCTTGAAACAAAT
* * *
965996 TTCGTCTCTCTTGAGACAGTTTCTCTTGAAACACCAATCT
129 TTCGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATAT
* * * *
966036 TTGAATATGTTTCTCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTATCTTGAAACA
1 TTGAACATGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTAAAACA
966096 CAAAAAAACC
Statistics
Matches: 192, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
165 33 0.17
166 108 0.56
167 8 0.04
168 41 0.21
169 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (168 bp):
TTGAACATGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTAAAACAAATTT
TGTCTCTCTTGAGACGGTTTCCCTTGAAACAAAAACTTTGAACCTGTTTTCCTTGAAACAAATTT
CGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATAT
Found at i:966003 original size:65 final size:66
Alignment explanation
Indices: 965923--966099 Score: 216
Period size: 67 Copynumber: 2.7 Consensus size: 66
965913 GTTTCTTTCA
* * *
965923 AAACAAATTTTGTCTCTCTTGAGACGGTTTC-CTTTGAAGCA-AAATCTTTGAACCTGTTT-TCC
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTC-TTGAAACACAAATCTTTGAACATGTTTCT-C
*
965985 TTT
64 TTG
* * *
965988 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACACCAATCTTTGAATATGTTTCTCTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACAAATCTTTGAACATGTTTCTCTT
966053 G
66 G
* * *
966054 AAACAAAATTTTGCCTCCCTTGAGACAGTTTATCTTGAAACACAAA
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACAAA
966100 AAAACCTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
65 36 0.38
66 23 0.24
67 37 0.39
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (66 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACAAATCTTTGAACATGTTTCTCTT
G
Found at i:966090 original size:67 final size:65
Alignment explanation
Indices: 965923--966099 Score: 205
Period size: 65 Copynumber: 2.7 Consensus size: 65
965913 GTTTCTTTCA
* * * *
965923 AAACAAATTTTGTCTCTCTTGAGACGGTTTCCTTTGAAGCA-AAATCTTTGAACCTGTTTTCCTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTC-TTGAAACACAAATCTTTGAACATGTTTTCCTT
*
965987 T
65 G
* * *
965988 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACACCAATCTTTGAATATG-TTTCTCT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTT-TCTTGAAACACAAATCTTTGAACATGTTTTC-CT
966052 TG
64 TG
* *
966054 AAACAAAATTTTGCCTCCCTTGAGACAGTTTATCTTGAAACACAAA
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTT-TCTTGAAACACAAA
966100 AAAACCTTTG
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
65 39 0.41
66 20 0.21
67 36 0.38
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (65 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTTCTTGAAACACAAATCTTTGAACATGTTTTCCTTG
Found at i:966170 original size:35 final size:34
Alignment explanation
Indices: 966081--966197 Score: 207
Period size: 34 Copynumber: 3.4 Consensus size: 34
966071 CCTTGAGACA
*
966081 GTTTATCTTGAAACACAAAAAAACCTTTGAAATT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
966115 GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
*
966149 GTTTCTCTTGAAACACAAAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACAC-AAAAAAACCTTTGAAATT
966184 GTTTCTCTTGAAAC
1 GTTTCTCTTGAAAC
966198 TCAAGACCTT
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
34 49 0.61
35 31 0.39
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (34 bp):
GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
Found at i:967456 original size:16 final size:17
Alignment explanation
Indices: 967422--967459 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
967412 TTTATTTTTA
* *
967422 TTTTTATTTTTTCCTAT
1 TTTTTATTTTCTCCAAT
967439 TTTTTATTTTCT-CAAT
1 TTTTTATTTTCTCCAAT
967455 TTTTT
1 TTTTT
967460 CTTTCTTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTATTTTCTCCAAT
Found at i:969199 original size:44 final size:45
Alignment explanation
Indices: 969114--969206 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
969104 ATTATCTTGT
* *
969114 ATTTTTGGATGATATGGTCCTTAAAAAAATGCCCCAACATTTATC
1 ATTTTTGGATGACATGGTCCTTAAAAAAATGCCCCAACATTTACC
* *
969159 ATTTTTGGATGACATAGG-CCTT-CAAAAATGCCCTAACATTTACC
1 ATTTTTGGATGACAT-GGTCCTTAAAAAAATGCCCCAACATTTACC
969203 ATTT
1 ATTT
969207 CTTGCTCCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
44 23 0.53
45 18 0.42
46 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (45 bp):
ATTTTTGGATGACATGGTCCTTAAAAAAATGCCCCAACATTTACC
Found at i:969343 original size:13 final size:13
Alignment explanation
Indices: 969327--969353 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
969317 TTTATATTCA
969327 AATTTTGAAAAAT
1 AATTTTGAAAAAT
969340 AATTTTGAAAAAT
1 AATTTTGAAAAAT
969353 A
1 A
969354 TTTAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (13 bp):
AATTTTGAAAAAT
Found at i:969356 original size:12 final size:12
Alignment explanation
Indices: 969328--969375 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
969318 TTATATTCAA
969328 ATTTTGAAAAAT
1 ATTTTGAAAAAT
969340 AATTTTGAAAAAT
1 -ATTTTGAAAAAT
*
969353 A-TTTAATAAAAT
1 ATTTTGA-AAAAT
*
969365 TTTTTGAAAAA
1 ATTTTGAAAAA
969376 ATGCTGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 4 0.13
12 10 0.33
13 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (12 bp):
ATTTTGAAAAAT
Found at i:970294 original size:21 final size:20
Alignment explanation
Indices: 970270--970335 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
970260 ATTTTGTTTC
970270 TTCTTTTTAATT-TTTTCTCTT
1 TTCTTTTT-ATTCTTTTCT-TT
*
970291 TTCTTTTTTTTCTTTTCTTT
1 TTCTTTTTATTCTTTTCTTT
*
970311 TTCTTTTT-TTCTCTTT-ATT
1 TTCTTTTTATTCT-TTTCTTT
970330 TTCTTT
1 TTCTTT
970336 CGCTTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
19 12 0.29
20 15 0.37
21 14 0.34
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (20 bp):
TTCTTTTTATTCTTTTCTTT
Found at i:970307 original size:14 final size:14
Alignment explanation
Indices: 970280--970357 Score: 79
Period size: 14 Copynumber: 5.4 Consensus size: 14
970270 TTCTTTTTAA
*
970280 TTTTTTCTCTTTTC
1 TTTTTTTTCTTTTC
970294 TTTTTTTTCTTTTC
1 TTTTTTTTCTTTTC
970308 TTTTTCTTT-TTTTC
1 TTTTT-TTTCTTTTC
*
970322 TCTTTATTTTCTTTCGC
1 T-TTT-TTTTCTTT-TC
*
970339 TTGTTTTT-TTTTC
1 TTTTTTTTCTTTTC
970352 TTTTTT
1 TTTTTT
970358 CTATCTCTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
13 6 0.11
14 27 0.50
15 13 0.24
16 6 0.11
17 2 0.04
ACGTcount: A:0.01, C:0.15, G:0.03, T:0.81
Consensus pattern (14 bp):
TTTTTTTTCTTTTC
Found at i:970326 original size:30 final size:30
Alignment explanation
Indices: 970292--970357 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
970282 TTTTCTCTTT
* *
970292 TCTTTTTTTTCTTT-TCTTTTTCTTTTTTTC
1 TCTTTTTTTTCTTTCGCTTGTT-TTTTTTTC
*
970322 TCTTTATTTTCTTTCGCTTGTTTTTTTTTC
1 TCTTTTTTTTCTTTCGCTTGTTTTTTTTTC
970352 T-TTTTT
1 TCTTTTT
970358 CTATCTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 4 0.13
30 22 0.71
31 5 0.16
ACGTcount: A:0.02, C:0.15, G:0.03, T:0.80
Consensus pattern (30 bp):
TCTTTTTTTTCTTTCGCTTGTTTTTTTTTC
Found at i:970331 original size:19 final size:20
Alignment explanation
Indices: 970289--970335 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
970279 ATTTTTTCTC
*
970289 TTTTCTTTTTTTTCTTTTCT
1 TTTTCTTTTTTTTCTTTTCA
970309 TTTTC-TTTTTTTCTCTTT-A
1 TTTTCTTTTTTTTCT-TTTCA
970328 TTTTCTTT
1 TTTTCTTT
970336 CGCTTGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTCTTTTTTTTCTTTTCA
Found at i:970355 original size:5 final size:5
Alignment explanation
Indices: 970287--970335 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
970277 TAATTTTTTC
*
970287 TCTTT TCTTT T-TTT TCTTT TCTTT T-TCTT T-TTT TCTCTT TATTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCT-TT TCTTT TCT-TT TCTTT TCTTT
970336 CGCTTGTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
4 8 0.21
5 26 0.68
6 4 0.11
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (5 bp):
TCTTT
Found at i:974274 original size:28 final size:28
Alignment explanation
Indices: 974242--974299 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
974232 GTAATATATT
974242 TACATATATAGCATAAGTAAAATAATAA
1 TACATATATAGCATAAGTAAAATAATAA
974270 TACATATATAGCATAAGTAAAATAATAA
1 TACATATATAGCATAAGTAAAATAATAA
974298 TA
1 TA
974300 AAATTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (28 bp):
TACATATATAGCATAAGTAAAATAATAA
Found at i:974809 original size:26 final size:25
Alignment explanation
Indices: 974779--974848 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 25
974769 AGGTCTCCTT
974779 TTTTTTCTTTTTTTTATT-TTCTCTA
1 TTTTTTCTTTTTTTT-TTCTTCTCTA
974804 TGTTTTTCTTTCCCTTTTTTTCTTCTCTA
1 T-TTTTTCTTT---TTTTTTTCTTCTCTA
*
974833 TTTTTCCTTTTTTTTT
1 TTTTTTCTTTTTTTTT
974849 CTTAGAACCA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
25 7 0.18
26 9 0.23
28 10 0.26
29 13 0.33
ACGTcount: A:0.04, C:0.17, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTTTCTTTTTTTTTTCTTCTCTA
Found at i:974836 original size:14 final size:15
Alignment explanation
Indices: 974796--974842 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
974786 TTTTTTTTAT
974796 TTTCTCTATGTTTTTC
1 TTTCTCTAT-TTTTTC
*
974812 TTTCCCT-TTTTTTC
1 TTTCTCTATTTTTTC
*
974826 -TTCTCTATTTTTCC
1 TTTCTCTATTTTTTC
974840 TTT
1 TTT
974843 TTTTTTCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.04, C:0.23, G:0.02, T:0.70
Consensus pattern (15 bp):
TTTCTCTATTTTTTC
Found at i:981123 original size:20 final size:22
Alignment explanation
Indices: 981077--981128 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
981067 CCGGAAGGGG
981077 GTATCGATACCATAGTAGGGTA
1 GTATCGATACCATAGTAGGGTA
*
981099 GTATCGATACCATGGT-GGG-A
1 GTATCGATACCATAGTAGGGTA
981119 GTATCGATAC
1 GTATCGATAC
981129 TGAGGAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 11 0.38
21 3 0.10
22 15 0.52
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (22 bp):
GTATCGATACCATAGTAGGGTA
Found at i:981127 original size:95 final size:94
Alignment explanation
Indices: 980905--981130 Score: 292
Period size: 94 Copynumber: 2.4 Consensus size: 94
980895 GGTACCGACG
* * * **
980905 GGGTAGTATCAATACCATAGTAAGGGTATTGATACCAGGTAACATCAAACCTAATTTTGGTATCG
1 GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGGTAACATCAAACCTAATTTTGGTATCG
* *
980970 ATACCATAAAGGGGTATCGGTACATAGTA
66 ATACCAGAAAGGGGTATCGATACATAGTA
** * * *
980999 TAGTAGTATCGATACCATGGTAAGGGTATCGATACTGGGTCACATCGAATCTAATTTTGGTATCG
1 GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGGTAACATCAAACCTAATTTTGGTATCG
* *
981064 ATACCGGAAGGGGGTATCGATACCATAGTA
66 ATACCAGAAAGGGGTATCGATA-CATAGTA
*
981094 GGGTAGTATCGATACCATGGT-GGGAGTATCGATACTG
1 GGGTAGTATCGATACCATGGTAAGG-GTATCGATACTG
981131 AGGAACAATA
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
94 75 0.66
95 38 0.34
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (94 bp):
GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGGTAACATCAAACCTAATTTTGGTATCG
ATACCAGAAAGGGGTATCGATACATAGTA
Found at i:981516 original size:58 final size:58
Alignment explanation
Indices: 981453--981566 Score: 194
Period size: 59 Copynumber: 2.0 Consensus size: 58
981443 ATGGCATAAA
* *
981453 GTGTGC-AAAATGTTAAGAAATTCATACTAAGTGTATGAATTTTCGTATTGGGCACTTT
1 GTGTGCTAAAATATTAAGAAATTCATACTAAGTGTATGAATTTCCGTA-TGGGCACTTT
981511 GTGTGCTAAAATATTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACT
1 GTGTGCTAAAATATTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACT
981567 ATGTATGCGA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 14 0.26
59 39 0.74
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.36
Consensus pattern (58 bp):
GTGTGCTAAAATATTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTTT
Found at i:981936 original size:68 final size:67
Alignment explanation
Indices: 981824--982011 Score: 241
Period size: 68 Copynumber: 2.8 Consensus size: 67
981814 AAAGATTAAT
* * * *
981824 AGGCCTAACTGTGCAATTGACATAAATATGTCATTTATGTCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCAATTGAAAGAAATGTGTCA-TTATGCCAGTTAGATGAAAGGCTAAGTGCCT
981889 TTG
65 TTG
* *
981892 AGGCCTAACTGTGCATTTGAAAGAAATGTGTCATTAATGCCAGTTAGATGAAAGGCTAAGTGTCT
1 AGGCCTAACTGTGCAATTGAAAGAAATGTGTCATT-ATGCCAGTTAGATGAAAGGCTAAGTGCCT
981957 TTG
65 TTG
* ** * **
981960 AGGCCTAACTATGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAA
1 AGGCCTAACTGTGCAATTGAAAGAAATGTGTC-ATTATGCCAGTTAGATGAA
982012 CGGTTAAATA
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
67 2 0.02
68 100 0.95
69 3 0.03
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (67 bp):
AGGCCTAACTGTGCAATTGAAAGAAATGTGTCATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TG
Found at i:982100 original size:81 final size:81
Alignment explanation
Indices: 981963--982198 Score: 382
Period size: 81 Copynumber: 2.9 Consensus size: 81
981953 GTCTTTGAGG
* *
981963 CCTAACTATGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATATCGTTG
1 CCTAACTGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTG
982028 AGTAAAAGAATAATGA
66 AGTAAAAGAATAATGA
* * * * * *
982044 CCTAACTGTGTAATTGGTATAAATGTATCAATTATGCTAGTTAGATGAACGATTAAATACCGTTG
1 CCTAACTGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTG
* *
982109 AGTAAAAAAATAATGG
66 AGTAAAAGAATAATGA
982125 CCTAACTGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTG
1 CCTAACTGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTG
982190 AGTAAAAGA
66 AGTAAAAGA
982199 CGAAAGGTTA
Statistics
Matches: 138, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 138 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (81 bp):
CCTAACTGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTG
AGTAAAAGAATAATGA
Found at i:985359 original size:16 final size:16
Alignment explanation
Indices: 985338--985382 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
985328 TCTTAGGTAA
* *
985338 TTTTAAAATTTTTATT
1 TTTTAAAATTTTAAAT
* *
985354 TTTTAAAAATATAAAT
1 TTTTAAAATTTTAAAT
985370 TTTTAAAATTTTA
1 TTTTAAAATTTTA
985383 TAAAGGCGAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTAAAATTTTAAAT
Found at i:994786 original size:18 final size:18
Alignment explanation
Indices: 994741--994786 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
994731 TTTGCTCTTG
*
994741 TTTACTTTGCTTCATAGC
1 TTTACTTTGTTTCATAGC
994759 TTTACTTTGTTTCATAGC
1 TTTACTTTGTTTCATAGC
994777 TTTACTTTGT
1 TTTACTTTGT
994787 GGTATTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.15, C:0.17, G:0.11, T:0.57
Consensus pattern (18 bp):
TTTACTTTGTTTCATAGC
Found at i:1010512 original size:3 final size:3
Alignment explanation
Indices: 1010504--1010541 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
1010494 CATTTTTTAT
*
1010504 TTA TTA TTA TTT TTA TTA TTA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1010542 ATAATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1010517 original size:17 final size:16
Alignment explanation
Indices: 1010495--1010541 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
1010485 TTTTTTGCCC
1010495 ATTTTTTATTTATTATT
1 ATTTTTTA-TTATTATT
1010512 A-TTTTTATTATTATT
1 ATTTTTTATTATTATT
*
1010527 ATATTATTATTATTA
1 AT-TTTTTATTATTA
1010542 ATAATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 9 0.33
16 6 0.22
17 12 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTATTATTATT
Found at i:1010533 original size:11 final size:11
Alignment explanation
Indices: 1010500--1010539 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
1010490 TGCCCATTTT
1010500 TTATT-TATTA
1 TTATTATATTA
*
1010510 TTATTTTTATTA
1 TTA-TTATATTA
1010522 TTATTATATTA
1 TTATTATATTA
1010533 TTATTAT
1 TTATTAT
1010540 TAATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 3 0.11
11 16 0.59
12 8 0.30
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTATTATATTA
Found at i:1013300 original size:17 final size:17
Alignment explanation
Indices: 1013278--1013315 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
1013268 GTACTAACCA
1013278 TTTTATTT-TCTTCTTAT
1 TTTTATTTAT-TTCTTAT
*
1013295 TTTTATTTATTTTTTAT
1 TTTTATTTATTTCTTAT
1013312 TTTT
1 TTTT
1013316 TCATAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATTTATTTCTTAT
Found at i:1029910 original size:37 final size:37
Alignment explanation
Indices: 1029822--1030054 Score: 115
Period size: 37 Copynumber: 6.4 Consensus size: 37
1029812 GTTTCACTCG
* * * ** * *
1029822 AAACAAAAAAATTATCTCACTCGAGATAATTTTTCTC
1 AAACAAACAATTTATCTCACTTGAGATTGTTTTCCTT
*
1029859 AAAGCAAA-GATTTATCTCACTTGAGATTGTTTTCCTT
1 AAA-CAAACAATTTATCTCACTTGAGATTGTTTTCCTT
* * * ** *
1029896 AAACAAAC--TTTTTATCGCTTGAGAAAG-TTTCACTCG
1 AAACAAACAATTTATCTCACTTGAGATTGTTTTC-CT-T
* *
1029932 AAA-TAGCAATTTATCTCACTTGAGATTGTTTTCCTT
1 AAACAAACAATTTATCTCACTTGAGATTGTTTTCCTT
* * * ** *
1029968 AAA-ACAA-AATTTTTCTCGCTTAAGAAAG-TTTCACTCG
1 AAACA-AACAATTTATCTCACTTGAGATTGTTTTC-CT-T
* *
1030005 AAA-TAGCAATTTATCTCACTTGAGATTGTTTTCCTT
1 AAACAAACAATTTATCTCACTTGAGATTGTTTTCCTT
*
1030041 AAAACAAACTATTT
1 -AAACAAACAATTT
1030055 CTCACAGGAG
Statistics
Matches: 142, Mismatches: 40, Indels: 27
0.68 0.19 0.13
Matches are distributed among these distances:
34 4 0.03
35 22 0.15
36 29 0.20
37 69 0.49
38 18 0.13
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (37 bp):
AAACAAACAATTTATCTCACTTGAGATTGTTTTCCTT
Found at i:1030002 original size:73 final size:73
Alignment explanation
Indices: 1029868--1030119 Score: 416
Period size: 73 Copynumber: 3.5 Consensus size: 73
1029858 CAAAGCAAAG
*
1029868 ATTTATCTCACTTGAGATTGTTTTCCTT-AAACAAACTTTTTATCGCTTGAGAAAGTTTCACTCG
1 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAACTTTTTCTCGCTTGAGAAAGTTTCACTCG
1029932 AAATAGCA
66 AAATAGCA
* *
1029940 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAAATTTTTCTCGCTTAAGAAAGTTTCACTCG
1 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAACTTTTTCTCGCTTGAGAAAGTTTCACTCG
1030005 AAATAGCA
66 AAATAGCA
* * **
1030013 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAACTATTTCTCACAGGAGAAAGTTTCACTCG
1 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAACTTTTTCTCGCTTGAGAAAGTTTCACTCG
1030078 AAATAGCA
66 AAATAGCA
* *
1030086 ATTTATCTCACTTGAGATTATTTTTCTTAAAACA
1 ATTTATCTCACTTGAGATTGTTTTCCTTAAAACA
1030120 TTTCCAGAAG
Statistics
Matches: 168, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 28 0.17
73 140 0.83
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (73 bp):
ATTTATCTCACTTGAGATTGTTTTCCTTAAAACAAACTTTTTCTCGCTTGAGAAAGTTTCACTCG
AAATAGCA
Found at i:1030339 original size:123 final size:123
Alignment explanation
Indices: 1030120--1030493 Score: 615
Period size: 123 Copynumber: 3.0 Consensus size: 123
1030110 TCTTAAAACA
*
1030120 TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATCTGAA
1 TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAA
* * * *
1030185 GAACCTATTCAACCTTTTGCCTGACTCTATCGCAGAAGGAGATGGAGCAGCATCAACG
66 GAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAACATCAACG
1030243 TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAA
1 TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAA
* *
1030308 GAACTTATTCAACTTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCATCATCAACG
66 GAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAACATCAACG
* * *
1030366 TTTCCAAAAGGTGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTAAA
1 TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAA
** * *
1030431 GAACTTATTCAACCTTTTGCTCAACTC-ATCGCAGAAGGAGATAGAACAACATCAACA
66 GAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAACATCAACG
1030488 TTTCCA
1 TTTCCA
1030494 TCATAATCAA
Statistics
Matches: 236, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
122 33 0.14
123 203 0.86
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (123 bp):
TTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAA
GAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAACATCAACG
Found at i:1030629 original size:3 final size:3
Alignment explanation
Indices: 1030621--1030665 Score: 74
Period size: 3 Copynumber: 15.0 Consensus size: 3
1030611 ATTTTTTCAT
1030621 TTA TTA TTA TTA TTAA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1030666 ATAAATAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:1030680 original size:30 final size:29
Alignment explanation
Indices: 1030614--1030681 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
1030604 TTTGTCCATT
* *
1030614 TTTTCATT-TATTATTATTATTAATTATTA
1 TTTT-ATTATATTATTATTATTAATAATAA
1030643 TTATTATTATATTATTATTATTAATAAATAA
1 TT-TTATTATATTATTATTATTAAT-AATAA
1030674 TTTTATTA
1 TTTTATTA
1030682 CAAATCAGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 5 0.15
30 24 0.71
31 5 0.15
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTATTATATTATTATTATTAATAATAA
Found at i:1035342 original size:30 final size:30
Alignment explanation
Indices: 1035308--1035385 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
1035298 TAGTTTAAGT
*
1035308 TGATATTTTATCTAAAGTTTAGGATTGAAA
1 TGATATTTTATCTAAAGTTCAGGATTGAAA
*
1035338 TGATATTTTATCTAAAGTTCAGGGTTGAAA
1 TGATATTTTATCTAAAGTTCAGGATTGAAA
*
1035368 TG-TCATTTTAACTAAAGT
1 TGAT-ATTTTATCTAAAGT
1035386 GCAAGATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 1 0.02
30 43 0.98
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (30 bp):
TGATATTTTATCTAAAGTTCAGGATTGAAA
Found at i:1036596 original size:34 final size:34
Alignment explanation
Indices: 1036553--1036628 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
1036543 TATGTTCGAC
* *
1036553 CGCCGCCTCCAGATGGTCTGCTTAGCTGCTGCCA
1 CGCCGCCTCCAGATGGTCCGCTCAGCTGCTGCCA
1036587 CGCCGCCTCCAGATGGTCCGCTCAGCTGCTGCCA
1 CGCCGCCTCCAGATGGTCCGCTCAGCTGCTGCCA
*
1036621 TGCCGCCT
1 CGCCGCCT
1036629 TGCCAGAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.11, C:0.42, G:0.26, T:0.21
Consensus pattern (34 bp):
CGCCGCCTCCAGATGGTCCGCTCAGCTGCTGCCA
Found at i:1040593 original size:13 final size:14
Alignment explanation
Indices: 1040565--1040615 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
1040555 AAATAATACC
*
1040565 TTTTGCATACACACA
1 TTTTGCAT-TACACA
1040580 TTTT-CATTACACA
1 TTTTGCATTACACA
*
1040593 TTTTGCATT-CTCA
1 TTTTGCATTACACA
1040606 TTTTTGCATT
1 -TTTTGCATT
1040616 TACATCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 12 0.38
14 16 0.50
15 4 0.12
ACGTcount: A:0.24, C:0.22, G:0.06, T:0.49
Consensus pattern (14 bp):
TTTTGCATTACACA
Found at i:1041959 original size:90 final size:90
Alignment explanation
Indices: 1041842--1042018 Score: 309
Period size: 90 Copynumber: 2.0 Consensus size: 90
1041832 TAATCCTGAA
* * *
1041842 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
1041907 TAGAGTAACTTGGATATAAAAGGAT
66 TAGAGTAACTTGGATATAAAAGGAT
1041932 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
* *
1041997 TAGGGTAACTTGGCTATAAAAG
66 TAGAGTAACTTGGATATAAAAG
1042019 AGTGTGTTAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
TAGAGTAACTTGGATATAAAAGGAT
Found at i:1048715 original size:90 final size:89
Alignment explanation
Indices: 1048601--1048775 Score: 289
Period size: 90 Copynumber: 2.0 Consensus size: 89
1048591 TCTCGAATCT
* * *
1048601 TTAATTTCAATTAATTAAATATAGA-TATAATTAATTTGAAATAATAAAATCCCTGATATGATTA
1 TTAAATTCAATTAATTAAATATAGATTA-AATTAATTTGAAATAATAAAAACCCTAATATGATTA
1048665 GGGTAACTTGGATATAAAAGGATTA
65 GGGTAACTTGGATATAAAAGGATTA
1048690 TTAAATTCTAATTAATTAAATATAGATTAAATTAATTTGAAATAATAAAAACCCTAATATGATTA
1 TTAAATTC-AATTAATTAAATATAGATTAAATTAATTTGAAATAATAAAAACCCTAATATGATTA
*
1048755 GGGTAACTTGGCTATAAAAGG
65 GGGTAACTTGGATATAAAAGG
1048776 GTGTGTTAGG
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
89 7 0.09
90 71 0.89
91 2 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAGATTAAATTAATTTGAAATAATAAAAACCCTAATATGATTAG
GGTAACTTGGATATAAAAGGATTA
Found at i:1055345 original size:119 final size:118
Alignment explanation
Indices: 1055136--1055545 Score: 687
Period size: 119 Copynumber: 3.5 Consensus size: 118
1055126 GTTGTTTCGA
1055136 AAAATGAGAAAGCGA-TTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTCTGGGTGA
1 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTCT-GGTGA
** * * *
1055200 TTTGTAAAACCTATGGGTCATCTGTAAAACCTCAGGGTATGATGATTTCGTATG
65 TTTGTAAAACCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATG
*
1055254 AAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTCCTGGTGA
1 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCT-CTGGTGA
*
1055319 TTTGTAAAACCTCCAGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATG
65 TTTGTAAAACCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATG
* *
1055373 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTTCGGGTGA
1 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCC-TCTGGTGA
*
1055438 TTTGTAAAACCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTAGCATG
65 TTTGTAAAACCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATG
*
1055492 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTACTAGAAAATTAAAT
1 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAAT
1055546 GTACGAACAA
Statistics
Matches: 275, Mismatches: 14, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
118 14 0.05
119 258 0.94
120 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (118 bp):
AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTCTGGTGAT
TTGTAAAACCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATG
Found at i:1058526 original size:27 final size:27
Alignment explanation
Indices: 1058471--1058538 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
1058461 TTTCATTTTC
* *
1058471 ATGTATGTATAT-TTATATATGTTTTT
1 ATGTATGTATATATTATATATGATTAT
*
1058497 ATGTAAGTATATATTATATCAT-ATTAT
1 ATGTATGTATATATTATAT-ATGATTAT
*
1058524 ATGTGTGTATATATT
1 ATGTATGTATATATT
1058539 TATTTAATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 11 0.31
27 22 0.63
28 2 0.06
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.54
Consensus pattern (27 bp):
ATGTATGTATATATTATATATGATTAT
Found at i:1060712 original size:7 final size:7
Alignment explanation
Indices: 1060679--1060720 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
1060669 GGATCAATTT
1060679 TTTTGCA
1 TTTTGCA
*
1060686 -TCTGCA
1 TTTTGCA
1060692 -TTTGCA
1 TTTTGCA
1060698 TCTTTGCA
1 T-TTTGCA
1060706 TTTTGCA
1 TTTTGCA
1060713 TTTTGCA
1 TTTTGCA
1060720 T
1 T
1060721 CTGTATTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 10 0.32
7 14 0.45
8 7 0.23
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.52
Consensus pattern (7 bp):
TTTTGCA
Found at i:1062614 original size:25 final size:25
Alignment explanation
Indices: 1062580--1062630 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
1062570 CGCCACCTTA
1062580 TCCAAGCTGCCAATTGCTTCATGAG
1 TCCAAGCTGCCAATTGCTTCATGAG
*
1062605 TCCAAGCTGCCAGTTGCTTCATGAG
1 TCCAAGCTGCCAATTGCTTCATGAG
1062630 T
1 T
1062631 TTTGTTGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (25 bp):
TCCAAGCTGCCAATTGCTTCATGAG
Found at i:1067647 original size:13 final size:13
Alignment explanation
Indices: 1067631--1067655 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1067621 ACCGCTGACT
1067631 TTGACTTTGACCG
1 TTGACTTTGACCG
1067644 TTGACTTTGACC
1 TTGACTTTGACC
1067656 CAAAATGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (13 bp):
TTGACTTTGACCG
Found at i:1067669 original size:8 final size:8
Alignment explanation
Indices: 1067656--1067703 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
1067646 GACTTTGACC
1067656 CAAAATGT
1 CAAAATGT
*
1067664 CAAAATTT
1 CAAAATGT
1067672 CCAAAATGT
1 -CAAAATGT
*
1067681 CAAAATTT
1 CAAAATGT
1067689 CTAAAATGT
1 C-AAAATGT
1067698 CAAAAT
1 CAAAAT
1067704 TTCCGAAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 20 0.59
9 14 0.41
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (8 bp):
CAAAATGT
Found at i:1067677 original size:17 final size:17
Alignment explanation
Indices: 1067655--1067716 Score: 99
Period size: 17 Copynumber: 3.6 Consensus size: 17
1067645 TGACTTTGAC
1067655 CCAAAATGTCAAAATTT
1 CCAAAATGTCAAAATTT
1067672 CCAAAATGTCAAAATTT
1 CCAAAATGTCAAAATTT
*
1067689 CTAAAATGTCAAAATTT
1 CCAAAATGTCAAAATTT
1067706 CCGAAAA-GTCA
1 CC-AAAATGTCA
1067717 TATTTTATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 38 0.90
18 4 0.10
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (17 bp):
CCAAAATGTCAAAATTT
Found at i:1072538 original size:24 final size:24
Alignment explanation
Indices: 1072485--1072530 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
1072475 CACCACTACT
* *
1072485 CATATAATTTGCACCGAAGTGCCA
1 CATAGAATTTGCACCAAAGTGCCA
1072509 CATAGAATTTGCACCAAAGTGC
1 CATAGAATTTGCACCAAAGTGC
1072531 TATGTAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (24 bp):
CATAGAATTTGCACCAAAGTGCCA
Found at i:1072597 original size:23 final size:23
Alignment explanation
Indices: 1072534--1072619 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
1072524 AAAGTGCTAT
* * *
1072534 GTAGATTTGTCCCGAAGGATCGC
1 GTAGAATTGTCCCGAAGGACCAC
*
1072557 GCAGAATTTGTCCCGAAGGACCAC
1 GTAGAA-TTGTCCCGAAGGACCAC
*
1072581 GTAGAATTATCCCGAAGGACCAC
1 GTAGAATTGTCCCGAAGGACCAC
* *
1072604 ATAGATTTGTCCCGAA
1 GTAGAATTGTCCCGAA
1072620 TGACTGCGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 33 0.62
24 20 0.38
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (23 bp):
GTAGAATTGTCCCGAAGGACCAC
Found at i:1074893 original size:27 final size:27
Alignment explanation
Indices: 1074863--1074917 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
1074853 TAGTTTTATA
1074863 TAAAAATAACAAAGGTAGTATCGATAC
1 TAAAAATAACAAAGGTAGTATCGATAC
1074890 TAAAAATAACAAAGGTAGTATCGATAC
1 TAAAAATAACAAAGGTAGTATCGATAC
1074917 T
1 T
1074918 CCTTGTAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.24
Consensus pattern (27 bp):
TAAAAATAACAAAGGTAGTATCGATAC
Found at i:1074930 original size:21 final size:21
Alignment explanation
Indices: 1074906--1074945 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1074896 TAACAAAGGT
1074906 AGTATCGATACTCCT-TGTAGG
1 AGTATCGATA-TCCTATGTAGG
1074927 AGTATCGATATCCTATGTA
1 AGTATCGATATCCTATGTA
1074946 CTGGGCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (21 bp):
AGTATCGATATCCTATGTAGG
Found at i:1079146 original size:15 final size:16
Alignment explanation
Indices: 1079105--1079147 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
1079095 TTTAGATATT
*
1079105 ATATTATAAATTCAAA
1 ATATTTTAAATTCAAA
*
1079121 ATATGTTAAATT-AAA
1 ATATTTTAAATTCAAA
*
1079136 TTATTTTAAATT
1 ATATTTTAAATT
1079148 TATTTATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATTTTAAATTCAAA
Found at i:1097855 original size:19 final size:19
Alignment explanation
Indices: 1097831--1097868 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1097821 CATATACTCA
1097831 CCATGCAGACGAGCCATAC
1 CCATGCAGACGAGCCATAC
1097850 CCATGCAGACGAGCCATAC
1 CCATGCAGACGAGCCATAC
1097869 AAGCCATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.37, G:0.21, T:0.11
Consensus pattern (19 bp):
CCATGCAGACGAGCCATAC
Found at i:1097985 original size:29 final size:29
Alignment explanation
Indices: 1097949--1098025 Score: 154
Period size: 29 Copynumber: 2.7 Consensus size: 29
1097939 TCGCAGTCTG
1097949 GGCGACCTTGTAGGTCGCCATGTAGTCCC
1 GGCGACCTTGTAGGTCGCCATGTAGTCCC
1097978 GGCGACCTTGTAGGTCGCCATGTAGTCCC
1 GGCGACCTTGTAGGTCGCCATGTAGTCCC
1098007 GGCGACCTTGTAGGTCGCC
1 GGCGACCTTGTAGGTCGCC
1098026 CCTGCAGACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.13, C:0.31, G:0.32, T:0.23
Consensus pattern (29 bp):
GGCGACCTTGTAGGTCGCCATGTAGTCCC
Found at i:1098108 original size:47 final size:48
Alignment explanation
Indices: 1098037--1098149 Score: 157
Period size: 47 Copynumber: 2.4 Consensus size: 48
1098027 CTGCAGACCA
1098037 TGCATG-C-ACATGCA-GCCAAATAACTTCACGTGCTCCTGCT-CC-C
1 TGCATGCCTACATGCATGCCAAATAACTTCACGTGCTCCTGCTCCCGC
*
1098080 TGCATGCCTGCATGCATGCCAAGATAACTTCACGTGCTCCTGCTCCCCGC
1 TGCATGCCTACATGCATGCCAA-ATAACTTCACGTGCTCCTGCT-CCCGC
1098130 TGCATGCCTACA-GCATGCCA
1 TGCATGCCTACATGCATGCCA
1098150 TGTGATCCTA
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
43 6 0.10
44 1 0.02
45 6 0.10
46 5 0.08
47 21 0.34
49 10 0.16
50 12 0.20
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (48 bp):
TGCATGCCTACATGCATGCCAAATAACTTCACGTGCTCCTGCTCCCGC
Found at i:1098325 original size:16 final size:16
Alignment explanation
Indices: 1098304--1098354 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
1098294 AGATTCAGCC
1098304 GAGAAAGAAAGAAAGG
1 GAGAAAGAAAGAAAGG
*
1098320 GAGAAAGAAAGGAAAGT
1 GAGAAAGAAA-GAAAGG
*
1098337 AAG-AAG-AAGAAAGG
1 GAGAAAGAAAGAAAGG
1098351 GAGA
1 GAGA
1098355 TAAGGTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 7 0.24
15 2 0.07
16 13 0.45
17 7 0.24
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (16 bp):
GAGAAAGAAAGAAAGG
Found at i:1098380 original size:15 final size:17
Alignment explanation
Indices: 1098360--1098396 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
1098350 GGAGATAAGG
*
1098360 TAAATTGTTTA-TATT-
1 TAAATTATTTATTATTA
1098375 TAAATTATTTATTATTA
1 TAAATTATTTATTATTA
1098392 TAAAT
1 TAAAT
1098397 GTTAATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 4 0.21
17 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TAAATTATTTATTATTA
Found at i:1098630 original size:12 final size:12
Alignment explanation
Indices: 1098613--1098664 Score: 70
Period size: 12 Copynumber: 4.3 Consensus size: 12
1098603 TTATATAAAA
1098613 ATTAGTTAGTTT
1 ATTAGTTAGTTT
1098625 ATTAGTTAGTTT
1 ATTAGTTAGTTT
*
1098637 AGTTAGTAAGTTT
1 A-TTAGTTAGTTT
*
1098650 ATTAG-TAGTAT
1 ATTAGTTAGTTT
1098661 ATTA
1 ATTA
1098665 TAATGAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 8 0.22
12 17 0.47
13 11 0.31
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (12 bp):
ATTAGTTAGTTT
Found at i:1098706 original size:32 final size:30
Alignment explanation
Indices: 1098644--1098723 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 30
1098634 TTTAGTTAGT
1098644 AAGTTTATTAG-TAGTATATTATAATGAAAAA
1 AAGTTTATTAGTTAGT-T-TTATAATGAAAAA
1098675 ATAGTTTATTAGTTAGTTTTAGTATAT-AAAAA
1 A-AGTTTATTAGTTAGTTTTA-TA-ATGAAAAA
*
1098707 AATTTTATTAGTT-GTTT
1 AAGTTTATTAGTTAGTTT
1098724 AAGGGTTTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
30 4 0.09
31 15 0.34
32 19 0.43
33 6 0.14
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (30 bp):
AAGTTTATTAGTTAGTTTTATAATGAAAAA
Found at i:1098792 original size:15 final size:15
Alignment explanation
Indices: 1098769--1098806 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
1098759 GTTTGTTAGT
*
1098769 TTATTAGTTATTATA
1 TTATAAGTTATTATA
1098784 TTATAAGTTATTATA
1 TTATAAGTTATTATA
1098799 TTA-AAGTT
1 TTATAAGTT
1098807 TAGTGTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (15 bp):
TTATAAGTTATTATA
Found at i:1110071 original size:26 final size:26
Alignment explanation
Indices: 1110032--1110092 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
1110022 CCATTCCCCT
*
1110032 AACCAGAGGCTGTCGATCTTTGCACC
1 AACCAGAGGCTGTCGATATTTGCACC
* *
1110058 AACCAGAGGTTGTCGATATTTTCACC
1 AACCAGAGGCTGTCGATATTTGCACC
1110084 AACCAGAGG
1 AACCAGAGG
1110093 AGAGCCACGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
AACCAGAGGCTGTCGATATTTGCACC
Found at i:1110949 original size:106 final size:108
Alignment explanation
Indices: 1110764--1110983 Score: 284
Period size: 106 Copynumber: 2.0 Consensus size: 108
1110754 CACATTTTAA
*
1110764 GTCCCCCAAACTTTCCTGTATTTTTACAAAATGGTCGCTATTAGGGACTATTTTATAATTTTCCC
1 GTCCCCCAAACTTTCCTGTATTTTTACAAAATAGTC-CTATTAGGGACTATTTTATAATTTTCCC
* * *
1110829 ATTTATATGAATGCTTTGTAATTTTTGGTAAAATATCAGTCCAT
65 ATTTACATGAATGCTTTATAATTTTTGGTAAAATATCAGTCCAG
* * * * *
1110873 GTCCCCCAAA-TTTGCTGTGTTTTTGCAAAATAGT-C-ATTAGGGACTGTTTTCATAATTTTCTC
1 GTCCCCCAAACTTTCCTGTATTTTTACAAAATAGTCCTATTAGGGACTATTTT-ATAATTTTCCC
* * * *
1110935 ATTTACATGCATGCTTTATATTTTTTGGTAAAATCTCATTCCAG
65 ATTTACATGAATGCTTTATAATTTTTGGTAAAATATCAGTCCAG
1110979 GTCCC
1 GTCCC
1110984 ACTATGTTTG
Statistics
Matches: 97, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
105 14 0.14
106 53 0.55
108 20 0.21
109 10 0.10
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (108 bp):
GTCCCCCAAACTTTCCTGTATTTTTACAAAATAGTCCTATTAGGGACTATTTTATAATTTTCCCA
TTTACATGAATGCTTTATAATTTTTGGTAAAATATCAGTCCAG
Found at i:1111110 original size:21 final size:22
Alignment explanation
Indices: 1111073--1111113 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1111063 TTTTATTTTA
1111073 ATTTAGTCACTATTAATTTCTG
1 ATTTAGTCACTATTAATTTCTG
1111095 ATTTAG-CTACTA-TAATTTC
1 ATTTAGTC-ACTATTAATTTC
1111114 AATTTTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (22 bp):
ATTTAGTCACTATTAATTTCTG
Found at i:1111155 original size:50 final size:51
Alignment explanation
Indices: 1111074--1111184 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 51
1111064 TTTATTTTAA
* * *
1111074 TTTAGTCACTATTAATTTCTGATTTAGCTACTATAATTTCA-ATT-TTGCAT
1 TTTAGTCACTATTAACTTCTGAATTAACTACTA-AATTTCATATTCTTGCAT
* * * * * *
1111124 TTTAGTCATTATTTACTTCTTAATTAACTACTAACTTTTATTTTCTTGCAT
1 TTTAGTCACTATTAACTTCTGAATTAACTACTAAATTTCATATTCTTGCAT
1111175 TTTAGTCACT
1 TTTAGTCACT
1111185 GTTATCTTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
49 5 0.10
50 29 0.59
51 15 0.31
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.52
Consensus pattern (51 bp):
TTTAGTCACTATTAACTTCTGAATTAACTACTAAATTTCATATTCTTGCAT
Done.