Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4978262
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 19 of 24
Found at i:3685161 original size:15 final size:15
Alignment explanation
Indices: 3685141--3685215 Score: 123
Period size: 15 Copynumber: 5.0 Consensus size: 15
3685131 TAATAAGGTT
3685141 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
3685156 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
3685171 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
3685186 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
3685201 AATTATTATAAAATA
1 ATTTATTTTAAAATA
3685216 TGGATTGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 56 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:3685256 original size:33 final size:32
Alignment explanation
Indices: 3685156--3685270 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 32
3685146 TTTTAAAATA
* * *
3685156 ATTTATTTTAAAATAATTTATTATA--AAATA
1 ATTTATTTTAAAATAATTTATTATATGGATTG
*
3685186 ATTTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTTAAAAT-AA-T-TTAT--TATATGGATTG
3685223 ATTTATTTTAAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAAATAATTTATTA-TATGGATTG
3685256 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
3685271 TGGATTGATT
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
30 14 0.19
31 2 0.03
32 2 0.03
33 28 0.39
34 4 0.06
35 4 0.06
36 2 0.03
37 16 0.22
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (32 bp):
ATTTATTTTAAAATAATTTATTATATGGATTG
Found at i:3685272 original size:22 final size:22
Alignment explanation
Indices: 3685247--3685289 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3685237 AATTTATTAG
3685247 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3685269 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3685290 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3685307 original size:32 final size:32
Alignment explanation
Indices: 3685269--3685353 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
3685259 TATTTTAAAA
3685269 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
3685301 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
*
3685333 TATAGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3685354 ATATGGATTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (32 bp):
TATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:3685362 original size:22 final size:22
Alignment explanation
Indices: 3685337--3685454 Score: 99
Period size: 22 Copynumber: 5.5 Consensus size: 22
3685327 TATTAGTATA
3685337 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
*** *
3685359 GATTGATTTATTATTGTAGTTGTATA
1 GATTGATTTA-T-TT-TA-AAATATG
3685385 GATTGATTTATTTT-AAATA--
1 GATTGATTTATTTTAAAATATG
*
3685404 -ATTGATTTA-TTT---GTATG
1 GATTGATTTATTTTAAAATATG
3685421 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
3685443 GATTGATTTATT
1 GATTGATTTATT
3685455 ATTGTAGTTG
Statistics
Matches: 76, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
15 2 0.03
17 3 0.04
18 18 0.24
19 3 0.04
21 2 0.03
22 26 0.34
23 2 0.03
24 4 0.05
25 3 0.04
26 13 0.17
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.53
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATG
Found at i:3685409 original size:18 final size:19
Alignment explanation
Indices: 3685386--3685437 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
3685376 AGTTGTATAG
3685386 ATTGATTTATTTTAAAT-A
1 ATTGATTTATTTTAAATGA
*
3685404 ATTGATTTATTTGT--ATGG
1 ATTGATTTATTT-TAAATGA
3685422 ATTGATTTATTTTAAA
1 ATTGATTTATTTTAAA
3685438 ATATGGATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 3 0.10
18 24 0.83
19 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (19 bp):
ATTGATTTATTTTAAATGA
Found at i:3685447 original size:84 final size:80
Alignment explanation
Indices: 3685214--3685611 Score: 606
Period size: 84 Copynumber: 4.9 Consensus size: 80
3685204 TATTATAAAA
3685214 TATGGATTGATTTATTTTAAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
1 TATGGATTGATTTATTTT-AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
*
3685279 TTTATTTTAAATAATTTA-TTAG
65 TTTA--TT--AT--TGTAGTT-G
*
3685301 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685366 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
* *
3685381 TATAGATTGATTTATTTTAAATAATTGATTTATTTGTATGGATTGATTTATTTTAAAATATGGAT
1 TATGGATTGATTTATTTTAAAT-A---ATTTATTAGTATGGATTGATTTATTTTAAAATATGGAT
3685446 TGATTTATTATTGTAGTTG
62 TGATTTATTATTGTAGTTG
3685465 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685529 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
* *
3685544 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGA-TT-TTTTAAAATATGGTTTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685607 TTATT
66 TTATT
3685612 TTAAATAATT
Statistics
Matches: 296, Mismatches: 9, Indels: 21
0.91 0.03 0.06
Matches are distributed among these distances:
78 24 0.08
79 74 0.25
80 47 0.16
81 3 0.01
82 2 0.01
83 1 0.00
84 78 0.26
86 49 0.17
87 18 0.06
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.53
Consensus pattern (80 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
TTATTATTGTAGTTG
Found at i:3685607 original size:52 final size:54
Alignment explanation
Indices: 3685203--3685665 Score: 307
Period size: 54 Copynumber: 8.5 Consensus size: 54
3685193 TTAAAATAAA
* *
3685203 TTATTATAAAATATGGATTGATTTATTTTAAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTT-AAATAATTTATTAGTATGAATTGAT
*
3685258 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGAT
* * * * * * *
3685312 TTATTTT-AAATA---ATTTA-TTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTA-AATAATTTA--TT--AGTATGAATTGAT
*** * * *
3685366 TTATTATTGTAGTTGTATAGATTGATTTATTTTAAATAATTGATTTATTTGTATGGATTGAT
1 TTA-T-TT-TA-AAATATGGATTGATTTATTTTAAAT-A---ATTTATTAGTATGAATTGAT
* *
3685428 TTATTTTAAAATATGGATTGATTTA--TT--AT--TGTAGTT-GTATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTA-TTAGTATGAATTGAT
* * * * * * * *
3685476 TTATTTT-AAATA---ATTTATTAGTATGGATTGATTTATTTA-AAATATGGATTGAT
1 TTATTTTAAAATATGGATTGATT--TAT--TTTAAATAATTTATTAGTATGAATTGAT
***
3685529 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGA-
1 TTA-T-TT-TA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGAT
* *
3685586 TT-TTTTAAAATATGGTTTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGAT
3685639 TTATTTTAAAATATGGATTGATTTATT
1 TTATTTTAAAATATGGATTGATTTATT
3685666 ATTGTAGTTG
Statistics
Matches: 323, Mismatches: 44, Indels: 83
0.72 0.10 0.18
Matches are distributed among these distances:
44 6 0.02
46 2 0.01
47 5 0.02
48 22 0.07
49 8 0.02
50 13 0.04
52 43 0.13
53 23 0.07
54 78 0.24
55 32 0.10
56 5 0.02
57 12 0.04
58 25 0.08
59 7 0.02
60 2 0.01
61 7 0.02
62 20 0.06
63 6 0.02
64 2 0.01
66 5 0.02
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (54 bp):
TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGAT
Found at i:3685642 original size:18 final size:18
Alignment explanation
Indices: 3685619--3685666 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
3685609 ATTTTAAATA
*
3685619 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
3685637 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
3685659 ATTTATTA
1 ATTTATTA
3685667 TTGTAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:3685642 original size:211 final size:219
Alignment explanation
Indices: 3685384--3685831 Score: 709
Period size: 211 Copynumber: 2.1 Consensus size: 219
3685374 GTAGTTGTAT
*
3685384 AGATTGATTTATTTTAAATAATTGATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGA
1 AGATTGATTTATTTTAAATAA-T-ATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
3685449 TTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TT
64 TTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTT
3685513 TAAAATATGGATTGATTTA-TT-AT-TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATT
129 TAAAATATGGATTGATTTATTTAATATGTA-TTAGTATGGATTGATTTATTTTAAATAATTTATT
*
3685574 AGTAT-GAATTGA-TT-TTTTAAAATAT
193 AGTATAG-ATTGATTTATTTTAAAATAC
* *
3685599 GGTTTGATTTATTTTAAAT-A-ATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
1 AGATTGATTTATTTTAAATAATATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
3685662 TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA
66 TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA
*
3685727 AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATT
131 AAATATGGATTGATTTA-TTT-AAT-ATGTATTAGTATGGATTGATTTATTTTAAATAATTTATT
*
3685792 TGTATAGATTGATTTATTTTAAAATAC
193 AGTATAGATTGATTTATTTTAAAATAC
3685819 AGATTGATTTATT
1 AGATTGATTTATT
3685832 ATTGTAGTTG
Statistics
Matches: 214, Mismatches: 8, Indels: 17
0.90 0.03 0.07
Matches are distributed among these distances:
211 102 0.48
212 21 0.10
214 3 0.01
215 17 0.08
216 2 0.01
217 2 0.01
218 43 0.20
219 3 0.01
220 21 0.10
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (219 bp):
AGATTGATTTATTTTAAATAATATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA
AAATATGGATTGATTTATTTAATATGTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGT
ATAGATTGATTTATTTTAAAATAC
Found at i:3685690 original size:132 final size:134
Alignment explanation
Indices: 3685465--3685782 Score: 597
Period size: 132 Copynumber: 2.4 Consensus size: 134
3685455 ATTGTAGTTG
3685465 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685529 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGA-TT-TTTT
66 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
3685592 AAAA
131 AAAA
*
3685596 TATGGTTTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
*
3685661 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
66 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
3685726 AAAA
131 AAAA
3685730 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
3685783 TAATTTATTT
Statistics
Matches: 181, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
131 45 0.25
132 74 0.41
133 2 0.01
134 60 0.33
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (134 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
AAAA
Found at i:3685698 original size:80 final size:80
Alignment explanation
Indices: 3685596--3685911 Score: 490
Period size: 80 Copynumber: 3.9 Consensus size: 80
3685586 TTTTTTAAAA
*
3685596 TATGGTTTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685661 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
3685676 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
*
3685741 TTATTTTAAATAATTTA-TTAG
66 TTA--TT--AT--TGTAGTT-G
* * **
3685762 TATGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAATACAGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685827 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
* *
3685842 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAAATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
3685907 TTATT
66 TTATT
3685912 TTAAATAATT
Statistics
Matches: 215, Mismatches: 13, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
80 135 0.63
81 2 0.01
82 4 0.02
84 4 0.02
85 2 0.01
86 68 0.32
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (80 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
TTATTATTGTAGTTG
Found at i:3685716 original size:32 final size:32
Alignment explanation
Indices: 3685675--3685814 Score: 192
Period size: 32 Copynumber: 4.7 Consensus size: 32
3685665 TATTGTAGTT
3685675 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3685707 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3685730 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
3685761 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
3685793 GTATAGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
3685815 ATACAGATTG
Statistics
Matches: 96, Mismatches: 2, Indels: 20
0.81 0.02 0.17
Matches are distributed among these distances:
22 14 0.15
23 4 0.04
25 1 0.01
26 3 0.03
28 3 0.03
29 1 0.01
31 4 0.04
32 66 0.69
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:3685733 original size:22 final size:22
Alignment explanation
Indices: 3685708--3685750 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3685698 AATTTATTAG
3685708 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3685730 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3685751 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3685789 original size:166 final size:166
Alignment explanation
Indices: 3685596--3685925 Score: 597
Period size: 166 Copynumber: 2.0 Consensus size: 166
3685586 TTTTTTAAAA
* * **
3685596 TATGGTTTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATACAGATTGAT
*
3685661 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
66 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
*
3685726 AAAATATGGATTGATTTATTTTAAATAATTTATTAG
131 AAAAAATGGATTGATTTATTTTAAATAATTTATTAG
*
3685762 TATGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAATACAGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATACAGATTGAT
3685827 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
66 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
3685892 AAAAAATGGATTGATTTATTTTAAATAATTTATT
131 AAAAAATGGATTGATTTATTTTAAATAATTTATT
3685926 TGTAGTTGTA
Statistics
Matches: 157, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
166 157 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (166 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATACAGATTGAT
TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT
AAAAAATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:3685913 original size:54 final size:54
Alignment explanation
Indices: 3685677--3685925 Score: 247
Period size: 54 Copynumber: 4.5 Consensus size: 54
3685667 TTGTAGTTGT
* *
3685677 ATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAA
* *
3685731 ATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATA
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAA
* * * * ** * ****
3685785 AT---TT-ATTT-GTATAGATTGATTTATTTTAAAATACAGATTGATTTATTATTGTAGTTGT
1 ATGGATTGATTTATTTTA-AATAATTTA--TTAGTAT-GA-ATTGATTTA-T-TT-TA-AAAA
3685843 ATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAA
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAA
3685897 ATGGATTGATTTATTTTAAATAATTTATT
1 ATGGATTGATTTATTTTAAATAATTTATT
3685926 TGTAGTTGTA
Statistics
Matches: 156, Mismatches: 25, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
49 3 0.02
50 11 0.07
51 2 0.01
52 5 0.03
54 92 0.59
55 3 0.02
56 4 0.03
57 3 0.02
58 11 0.07
59 1 0.01
60 5 0.03
61 2 0.01
62 11 0.07
63 3 0.02
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (54 bp):
ATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAAA
Found at i:3685977 original size:31 final size:31
Alignment explanation
Indices: 3685939--3685997 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
3685929 AGTTGTATGG
* *
3685939 ATTATTTAAATTTCAGTATTGTAAAACTACA
1 ATTATTTAAATCTCAGTATTGCAAAACTACA
3685970 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
3685998 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTACA
Found at i:3688504 original size:21 final size:21
Alignment explanation
Indices: 3688480--3688522 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
3688470 CACTTTTAAC
3688480 ATTTGTTCTCTT-AATTTATTT
1 ATTT-TTCTCTTCAATTTATTT
3688501 ATTTTTCTCTTCAATTTATTT
1 ATTTTTCTCTTCAATTTATTT
3688522 A
1 A
3688523 GTATTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTTCTCTTCAATTTATTT
Found at i:3692314 original size:106 final size:106
Alignment explanation
Indices: 3692126--3692897 Score: 1294
Period size: 106 Copynumber: 7.4 Consensus size: 106
3692116 ATTTTGCTCG
*
3692126 AGAGCCAATTTCAACTTCA-A-CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
**
3692189 CGAAGGGACCGCTACTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
*
3692230 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
3692295 CGAAGGGACCGCTGGTTGTCAACAAATAACTT-TCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCT-CAATTTC
* *
3692336 AGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
3692401 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* * * *
3692442 ATAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACACATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
3692507 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* * *
3692548 AGAGCCAATTTAAACTTCACAACGAAGGATATTGGACT-CAGACAACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
3692612 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* *
3692653 AGAGCCAA-TTCAACTTCACAACGAAGGATATT-G-CCCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
3692715 CGAAGGGACCGTTGGTTGTCAA-AAACAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
3692755 AGAGCCAATTTCAACTTCACAGCGAA-GATATTGGACTCCAGACAACGC-AGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
3692818 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
*
3692859 AGAGCCAATTTCAACTTCACAGCGGAGGATATTGGACTC
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTC
3692898 GGAACAATAT
Statistics
Matches: 632, Mismatches: 26, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
102 32 0.05
103 100 0.16
104 96 0.15
105 88 0.14
106 315 0.50
107 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (106 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
Found at i:3694850 original size:21 final size:21
Alignment explanation
Indices: 3694826--3694868 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
3694816 CACTTTTAAC
3694826 ATTTGTTCTCTT-AATTTATTT
1 ATTT-TTCTCTTCAATTTATTT
3694847 ATTTTTCTCTTCAATTTATTT
1 ATTTTTCTCTTCAATTTATTT
3694868 A
1 A
3694869 GTATTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTTCTCTTCAATTTATTT
Found at i:3695939 original size:23 final size:26
Alignment explanation
Indices: 3695913--3695983 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 26
3695903 AGGATAAAGA
*
3695913 TAAAAGATATTTAAT-TCT-TTTA-T
1 TAAAAGAGATTTAATATCTCTTTATT
*
3695936 TAAAAGAGATTTATTATCTCTTTATT
1 TAAAAGAGATTTAATATCTCTTTATT
* *
3695962 TAAAAGAG-GTTAATAGCTCTTT
1 TAAAAGAGATTTAATATCTCTTT
3695984 TATTAGAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 13 0.32
24 3 0.08
25 15 0.38
26 9 0.22
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (26 bp):
TAAAAGAGATTTAATATCTCTTTATT
Found at i:3695959 original size:25 final size:24
Alignment explanation
Indices: 3695913--3695969 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 24
3695903 AGGATAAAGA
*
3695913 TAAAAGATATTTAATTCTTTTA-T
1 TAAAAGAGATTTAATTCTTTTATT
*
3695936 TAAAAGAGATTTATTATCTCTTTATT
1 TAAAAGAGATTTAAT-TCT-TTTATT
3695962 TAAAAGAG
1 TAAAAGAG
3695970 GTTAATAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 13 0.45
24 3 0.10
25 4 0.14
26 9 0.31
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (24 bp):
TAAAAGAGATTTAATTCTTTTATT
Found at i:3695985 original size:26 final size:27
Alignment explanation
Indices: 3695928--3695987 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
3695918 GATATTTAAT
* * *
3695928 TCTTTTA-TTAAAAGAGATTTATTATC
1 TCTTTTATTTAAAAGAGAGTTAATAGC
3695954 TC-TTTATTTAAAAGAG-GTTAATAGC
1 TCTTTTATTTAAAAGAGAGTTAATAGC
3695979 TCTTTTATT
1 TCTTTTATT
3695988 AGAATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (27 bp):
TCTTTTATTTAAAAGAGAGTTAATAGC
Found at i:3708945 original size:22 final size:21
Alignment explanation
Indices: 3708895--3708961 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 21
3708885 GACATATACT
*
3708895 TGGTCCTT-A-GAATATGTATA
1 TGGTCCTTAAGGAAT-TTTATA
* *
3708915 TGATTCTTAAGGAATTTCTATA
1 TGGTCCTTAAGGAATTT-TATA
*
3708937 TGGTCCTTATGGACATTTTATA
1 TGGTCCTTAAGGA-ATTTTATA
3708959 TGG
1 TGG
3708962 CACTTTGGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 6 0.16
21 2 0.05
22 25 0.68
23 4 0.11
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.43
Consensus pattern (21 bp):
TGGTCCTTAAGGAATTTTATA
Found at i:3708985 original size:23 final size:23
Alignment explanation
Indices: 3708959--3709027 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
3708949 ACATTTTATA
3708959 TGGCACTTTGGTGTATTTCTACG
1 TGGCACTTTGGTGTATTTCTACG
*
3708982 TGGCACTTTGGTGTAATTCTACG
1 TGGCACTTTGGTGTATTTCTACG
* * *
3709005 TGGCACTTAGGTGCATTTATACG
1 TGGCACTTTGGTGTATTTCTACG
3709028 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.17, C:0.17, G:0.26, T:0.39
Consensus pattern (23 bp):
TGGCACTTTGGTGTATTTCTACG
Found at i:3709085 original size:17 final size:17
Alignment explanation
Indices: 3709065--3709105 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
3709055 CCTCTATAGA
*
3709065 CTCACATATATATATTT
1 CTCACATATATATAGTT
3709082 CTCACATATATATAGTT
1 CTCACATATATATAGTT
3709099 CTCACAT
1 CTCACAT
3709106 GTGTACATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.02, T:0.41
Consensus pattern (17 bp):
CTCACATATATATAGTT
Found at i:3715742 original size:21 final size:20
Alignment explanation
Indices: 3715710--3715748 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
3715700 TCGAAAATAT
*
3715710 TAAAAAATTAATATTTTAGA
1 TAAAAAAATAATATTTTAGA
*
3715730 TAAAAATAATAATTTTTTA
1 TAAAAA-AATAATATTTTA
3715749 AACAAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
TAAAAAAATAATATTTTAGA
Found at i:3716207 original size:2 final size:2
Alignment explanation
Indices: 3716202--3716251 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
3716192 ATAACTGAAC
3716202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3716244 TA TA TA TA
1 TA TA TA TA
3716252 AAAAGACAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3717454 original size:6 final size:6
Alignment explanation
Indices: 3717443--3717469 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
3717433 AGTCATCAGA
3717443 TTGTTC TTGTTC TTGTTC TTGTTC TTG
1 TTGTTC TTGTTC TTGTTC TTGTTC TTG
3717470 CTATGATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.19, T:0.67
Consensus pattern (6 bp):
TTGTTC
Found at i:3721108 original size:22 final size:22
Alignment explanation
Indices: 3721077--3721123 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
3721067 TGAAAGCTAC
*
3721077 CAACGTCGCATAACCAAAGCTG
1 CAACGCCGCATAACCAAAGCTG
*
3721099 CAACGCCGCATAACCAACGCTG
1 CAACGCCGCATAACCAAAGCTG
3721121 CAA
1 CAA
3721124 TTTATTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.36, G:0.17, T:0.11
Consensus pattern (22 bp):
CAACGCCGCATAACCAAAGCTG
Found at i:3721145 original size:13 final size:14
Alignment explanation
Indices: 3721127--3721159 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
3721117 GCTGCAATTT
3721127 ATTTCAAAAAG-AA
1 ATTTCAAAAAGCAA
3721140 ATTTC-AAAAGCAA
1 ATTTCAAAAAGCAA
3721153 ATTTCAA
1 ATTTCAA
3721160 CGATGCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 12 0.67
14 1 0.06
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (14 bp):
ATTTCAAAAAGCAA
Found at i:3721213 original size:24 final size:24
Alignment explanation
Indices: 3721183--3721238 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
3721173 TGGTTTAATT
3721183 TGATGCATCATTGCATCATATATC
1 TGATGCATCATTGCATCATATATC
3721207 TGATGCATCATTGCATCATATATC
1 TGATGCATCATTGCATCATATATC
3721231 TGATGCAT
1 TGATGCAT
3721239 TATGATGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (24 bp):
TGATGCATCATTGCATCATATATC
Found at i:3725354 original size:23 final size:23
Alignment explanation
Indices: 3725291--3725411 Score: 129
Period size: 23 Copynumber: 5.2 Consensus size: 23
3725281 AAGTGCAACG
* *
3725291 TAGAATT-TACCCAAAGGATCGCA
1 TAGAATTGT-CCCAAAGGACCACA
* *
3725314 TAGAATTTGTCCCGAAGGACCACG
1 TAGAA-TTGTCCCAAAGGACCACA
**
3725338 TAGAATTGTATCAAAGGACCACA
1 TAGAATTGTCCCAAAGGACCACA
*
3725361 TAGATTTGTCCCGAAA-GACCACA
1 TAGAATTGTCCC-AAAGGACCACA
*
3725384 TAGATTTGTCCCAAAGGACCACA
1 TAGAATTGTCCCAAAGGACCACA
3725407 TAGAA
1 TAGAA
3725412 CCCTCGACTC
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
22 3 0.04
23 58 0.71
24 20 0.24
25 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.21
Consensus pattern (23 bp):
TAGAATTGTCCCAAAGGACCACA
Found at i:3725399 original size:46 final size:46
Alignment explanation
Indices: 3725291--3725410 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
3725281 AAGTGCAACG
* * * *
3725291 TAGAATT-TACCCAAAGGATCGCATAGAATTTGTCCCGAAGGACCACG
1 TAGAATTGT-CCCAAAGGACCACATAG-ATTTGTCCCGAAAGACCACA
**
3725338 TAGAATTGTATCAAAGGACCACATAGATTTGTCCCGAAAGACCACA
1 TAGAATTGTCCCAAAGGACCACATAGATTTGTCCCGAAAGACCACA
*
3725384 TAGATTTGTCCCAAAGGACCACATAGA
1 TAGAATTGTCCCAAAGGACCACATAGA
3725411 ACCCTCGACT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 42 0.67
47 20 0.32
48 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (46 bp):
TAGAATTGTCCCAAAGGACCACATAGATTTGTCCCGAAAGACCACA
Found at i:3725680 original size:15 final size:14
Alignment explanation
Indices: 3725618--3725681 Score: 51
Period size: 15 Copynumber: 4.5 Consensus size: 14
3725608 ATTTATGTTC
3725618 CATAGAACATGTTCA
1 CATAGAACAT-TTCA
* * *
3725633 CTTAGCACGTATTCA
1 CATAGAACAT-TTCA
3725648 CAT--AACATTTCA
1 CATAGAACATTTCA
*
3725660 CGTAGAACATTGTCA
1 CATAGAACATT-TCA
3725675 CATAGAA
1 CATAGAA
3725682 TTATCAAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
12 6 0.16
13 3 0.08
14 6 0.16
15 22 0.59
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (14 bp):
CATAGAACATTTCA
Found at i:3731420 original size:23 final size:23
Alignment explanation
Indices: 3731373--3731439 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
3731363 CACTGAAGTG
* * *
3731373 CCACGTAGAATTTTCCCAAAGGA
1 CCACGTAGAATTGTCTCGAAGGA
*
3731396 CCACGTAGAATTGTCTCGAATGA
1 CCACGTAGAATTGTCTCGAAGGA
** *
3731419 CCATATAGATTTGTCTCGAAG
1 CCACGTAGAATTGTCTCGAAG
3731440 AACAACATAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (23 bp):
CCACGTAGAATTGTCTCGAAGGA
Found at i:3731449 original size:23 final size:23
Alignment explanation
Indices: 3731401--3731453 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
3731391 AAGGACCACG
* * *
3731401 TAGAATTGTCTCGAATGACCATA
1 TAGATTTGTCTCGAATGACAACA
3731424 TAGATTTGTCTCGAA-GAACAACA
1 TAGATTTGTCTCGAATG-ACAACA
3731447 TAGATTT
1 TAGATTT
3731454 TTCCCGAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (23 bp):
TAGATTTGTCTCGAATGACAACA
Found at i:3732990 original size:4 final size:4
Alignment explanation
Indices: 3732981--3733009 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
3732971 CAGACATTTC
3732981 CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
3733010 CCACATGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
CTTT
Found at i:3736778 original size:21 final size:21
Alignment explanation
Indices: 3736754--3736796 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
3736744 GGAAATTCCC
3736754 TAGTTGTGGGAATATCATAGA
1 TAGTTGTGGGAATATCATAGA
3736775 TAGTTGTGGGAATATCATAGA
1 TAGTTGTGGGAATATCATAGA
3736796 T
1 T
3736797 CTTACTTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.35
Consensus pattern (21 bp):
TAGTTGTGGGAATATCATAGA
Found at i:3738867 original size:26 final size:26
Alignment explanation
Indices: 3738838--3738919 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 26
3738828 CCGTAGTGCT
*
3738838 TACACATAAGGTCATGCCCACCATAA
1 TACACATAAGGTCGTGCCCACCATAA
*
3738864 TACACATAAGGTCGTGCCTACCATAA
1 TACACATAAGGTCGTGCCCACCATAA
*
3738890 TACACATAAGGTCGTGTCCACCATAA
1 TACACATAAGGTCGTGCCCACCATAA
3738916 -ACAC
1 TACAC
3738920 TTAGTGCCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 4 0.08
26 48 0.92
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.21
Consensus pattern (26 bp):
TACACATAAGGTCGTGCCCACCATAA
Found at i:3743338 original size:29 final size:29
Alignment explanation
Indices: 3743305--3743467 Score: 159
Period size: 29 Copynumber: 5.7 Consensus size: 29
3743295 CATTTTTTTA
* *
3743305 TAATTACCAAAATAGCACCCTTTTCGAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
*
3743334 TAATTCCCAAAATAGCACCAATTTCGAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
* * ** *
3743363 TAATTCCCAGAATATCACCTTTTTC-AAA
1 TAATTCCCAAAATAGCACCCATTTCGAAT
* *
3743391 AAATTTACCAAAATAGCACCCATTTCGAAT
1 TAA-TTCCCAAAATAGCACCCATTTCGAAT
* ** **
3743421 TAATTCCCCAAATAGCACTAAACT-GAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
*
3743449 TAATTCCCAAAATAACACC
1 TAATTCCCAAAATAGCACC
3743468 GGTCAACGGT
Statistics
Matches: 107, Mismatches: 25, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
28 24 0.22
29 79 0.74
30 4 0.04
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (29 bp):
TAATTCCCAAAATAGCACCCATTTCGAAT
Found at i:3743493 original size:13 final size:13
Alignment explanation
Indices: 3743475--3743545 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
3743465 ACCGGTCAAC
3743475 GGTCAACGGGTCG
1 GGTCAACGGGTCG
3743488 GGTCAACGGGTCTGGTCG
1 GGTCAAC--G---GGTCG
3743506 GGTCAACGGTCGGATCG
1 GGTCAAC-G--GG-TCG
3743523 GGTCAAC-GGTCG
1 GGTCAACGGGTCG
3743535 GGTCAACGGGT
1 GGTCAACGGGT
3743546 AAACGGGTCG
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
12 10 0.20
13 12 0.24
15 1 0.02
16 2 0.04
17 12 0.24
18 12 0.24
ACGTcount: A:0.15, C:0.23, G:0.44, T:0.18
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:3743523 original size:17 final size:16
Alignment explanation
Indices: 3743483--3743535 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 16
3743473 ACGGTCAACG
3743483 GGTCGGGTCAACGGGTC
1 GGTCGGGTCAAC-GGTC
3743500 TGGTCGGGTCAACGGTC
1 -GGTCGGGTCAACGGTC
3743517 GGATCGGGTCAACGGTC
1 GG-TCGGGTCAACGGTC
3743534 GG
1 GG
3743536 GTCAACGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.06
17 20 0.59
18 12 0.35
ACGTcount: A:0.13, C:0.23, G:0.45, T:0.19
Consensus pattern (16 bp):
GGTCGGGTCAACGGTC
Found at i:3750657 original size:29 final size:29
Alignment explanation
Indices: 3750625--3750787 Score: 159
Period size: 29 Copynumber: 5.7 Consensus size: 29
3750615 ATTTTTTTTA
* *
3750625 TAATTACCAAAATAGCACCCTTTTCGAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
*
3750654 TAATTCCCAAAATAGCACCAATTTCGAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
* * ** *
3750683 TAATTCCCAGAATATCACCTTTTTC-AAA
1 TAATTCCCAAAATAGCACCCATTTCGAAT
* *
3750711 AAATTTACCAAAATAGCACCCATTTCGAAT
1 TAA-TTCCCAAAATAGCACCCATTTCGAAT
* * ***
3750741 TAATTCCCCAAATAGCA-CTAAACCGAAT
1 TAATTCCCAAAATAGCACCCATTTCGAAT
*
3750769 TAATTCCCAAAATAACACC
1 TAATTCCCAAAATAGCACC
3750788 GATCAACGGA
Statistics
Matches: 107, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
28 26 0.24
29 77 0.72
30 4 0.04
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (29 bp):
TAATTCCCAAAATAGCACCCATTTCGAAT
Found at i:3750730 original size:87 final size:86
Alignment explanation
Indices: 3750628--3750787 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 86
3750618 TTTTTTATAA
* ** *
3750628 TTACCAAAATAGCACCCTTTTCGAATTAATTCCCAAAATAGCACCAATTTCGAATTAATTCCCAG
1 TTACCAAAATAGCACCCATTTCGAATTAATTCCCAAAATAGCACCAA-ACCGAATTAATTCCCAA
*
3750693 AATATCACCTTTTTCAAAAAAT
65 AATAACACCTTTTTCAAAAAAT
* *
3750715 TTACCAAAATAGCACCCATTTCGAATTAATTCCCCAAATAGCACTAAACCGAATTAATTCCCAAA
1 TTACCAAAATAGCACCCATTTCGAATTAATTCCCAAAATAGCACCAAACCGAATTAATTCCCAAA
3750780 ATAACACC
66 ATAACACC
3750788 GATCAACGGA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
86 22 0.33
87 44 0.67
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (86 bp):
TTACCAAAATAGCACCCATTTCGAATTAATTCCCAAAATAGCACCAAACCGAATTAATTCCCAAA
ATAACACCTTTTTCAAAAAAT
Found at i:3750817 original size:13 final size:13
Alignment explanation
Indices: 3750799--3750823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3750789 ATCAACGGAC
3750799 AACGGGTCGGGTT
1 AACGGGTCGGGTT
3750812 AACGGGTCGGGT
1 AACGGGTCGGGT
3750824 CGGGTCAACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.48, T:0.20
Consensus pattern (13 bp):
AACGGGTCGGGTT
Found at i:3750863 original size:11 final size:11
Alignment explanation
Indices: 3750847--3750885 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
3750837 GTGACCAGTC
3750847 AAACCGGTTCA
1 AAACCGGTTCA
3750858 AAACCGGTT--
1 AAACCGGTTCA
3750867 AAACCGG-TCA
1 AAACCGGTTCA
3750877 AAACCGGTT
1 AAACCGGTT
3750886 TTCAGCGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.04
9 7 0.28
10 7 0.28
11 10 0.40
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (11 bp):
AAACCGGTTCA
Found at i:3750879 original size:19 final size:20
Alignment explanation
Indices: 3750847--3750885 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
3750837 GTGACCAGTC
3750847 AAACCGGTTCAAAACCGGTT
1 AAACCGGTTCAAAACCGGTT
3750867 AAACCGG-TCAAAACCGGTT
1 AAACCGGTTCAAAACCGGTT
3750886 TTCAGCGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (20 bp):
AAACCGGTTCAAAACCGGTT
Found at i:3750882 original size:10 final size:10
Alignment explanation
Indices: 3750847--3750884 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
3750837 GTGACCAGTC
3750847 AAACCGGTTCA
1 AAACCGG-TCA
*
3750858 AAACCGGT-T
1 AAACCGGTCA
3750867 AAACCGGTCA
1 AAACCGGTCA
3750877 AAACCGGT
1 AAACCGGT
3750885 TTTCAGCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.33
10 9 0.38
11 7 0.29
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (10 bp):
AAACCGGTCA
Found at i:3752659 original size:16 final size:16
Alignment explanation
Indices: 3752638--3752671 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3752628 TTACTATTCA
*
3752638 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
3752654 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
3752670 CG
1 CG
3752672 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:3759023 original size:15 final size:15
Alignment explanation
Indices: 3758982--3759048 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 15
3758972 TAAAATGATA
*
3758982 AATTTAGTTTTTAAT
1 AATTTAGTTTTTATT
*
3758997 -ATTTACACTTTTTATT
1 AATTT--AGTTTTTATT
3759013 AATTTAGTTTTTATT
1 AATTTAGTTTTTATT
*
3759028 CAATTTA-TTTTGAATT
1 -AATTTAGTTTT-TATT
3759044 AATTT
1 AATTT
3759049 CATCACATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
14 4 0.09
15 18 0.42
16 17 0.40
17 4 0.09
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (15 bp):
AATTTAGTTTTTATT
Found at i:3761410 original size:188 final size:191
Alignment explanation
Indices: 3761076--3761479 Score: 509
Period size: 188 Copynumber: 2.1 Consensus size: 191
3761066 ATTCATAGTC
** *
3761076 CTTTTGACTATTGCAAATTAAAAGATATTTTTTTTAATTTGAATATTAGTAGAATAATTACTCTT
1 CTTTTGACTATTGCAAATT--AA-ATATACTATTTAATTTGAATATTAG-AGAATAATTACTCTT
* * *
3761141 TTAATAAGTCAATTCAAAAAAGTATATGTTATCTTTTTAATTTTGAATATTAAAAGGTAATTACA
62 TGAATAAGTCAATTCAAAAAAGTATATGTTATCTTTTTAACTTTGAATATTAAAAGATAATTACA
* * *
3761206 TACTTTTGTATATTTCAAATTAAAATAATATATGTTTAATTTTGAATAGTAAAAGGA-TTTTA-A
127 TACTTTTGTATATTTCAAATTAAAATAATATATATTTAAGTTTAAATAGTAAAAGGAGTTTTATA
*
3761269 CTTTTGACCATTGCAAATTAAATATACTATTTAATTTGAATATTA-A-ATATAATTACTCTTTGA
1 CTTTTGACTATTGCAAATTAAATATACTATTTAATTTGAATATTAGAGA-ATAATTACTCTTTGA
* * * * *
3761332 ATATGTCAATTTAAAAAGGTATTTGTTATCTTTTTAACTTTGAATATT-AAAGATAATTATATA-
65 ATAAGTCAATTCAAAAAAGTATATGTTATCTTTTTAACTTTGAATATTAAAAGATAATTACATAC
* *
3761395 TATATAT-TTTATTTCAAATTAAAATAATATATATTTAAGTTTAAATGGTAAAAGGAGTTTTATA
130 T-T-T-TGTATATTTCAAATTAAAATAATATATATTTAAGTTTAAATAGTAAAAGGAGTTTTATA
* *
3761459 -TTTTGAATATTTCAAATTAAA
1 CTTTTGACTATTGCAAATTAAA
3761480 AGATATTGTT
Statistics
Matches: 185, Mismatches: 20, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
186 1 0.01
187 15 0.08
188 103 0.56
189 24 0.13
190 22 0.12
191 2 0.01
193 18 0.10
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (191 bp):
CTTTTGACTATTGCAAATTAAATATACTATTTAATTTGAATATTAGAGAATAATTACTCTTTGAA
TAAGTCAATTCAAAAAAGTATATGTTATCTTTTTAACTTTGAATATTAAAAGATAATTACATACT
TTTGTATATTTCAAATTAAAATAATATATATTTAAGTTTAAATAGTAAAAGGAGTTTTATA
Found at i:3762838 original size:10 final size:10
Alignment explanation
Indices: 3762823--3762850 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
3762813 AGTATTCCTA
3762823 GAAGGGAGGT
1 GAAGGGAGGT
3762833 GAAGGGAGGT
1 GAAGGGAGGT
3762843 GAAGGGAG
1 GAAGGGAG
3762851 ACTCTAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.61, T:0.07
Consensus pattern (10 bp):
GAAGGGAGGT
Found at i:3764854 original size:25 final size:25
Alignment explanation
Indices: 3764826--3764873 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
3764816 ATGACTAAGA
3764826 CACTAACCCATATACAAAAAATGGC
1 CACTAACCCATATACAAAAAATGGC
**
3764851 CACTAAGGCATATACAAAAAATG
1 CACTAACCCATATACAAAAAATG
3764874 ACCAAGCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.17
Consensus pattern (25 bp):
CACTAACCCATATACAAAAAATGGC
Found at i:3764908 original size:20 final size:20
Alignment explanation
Indices: 3764861--3764914 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 20
3764851 CACTAAGGCA
3764861 TATACAAAAAATGACCAAGCC
1 TATAC-AAAAATGACCAAGCC
3764882 -ATA-AAAAAT-ACCAAGCC
1 TATACAAAAATGACCAAGCC
3764899 GTATACAAAAAATGAC
1 -TATAC-AAAAATGAC
3764915 AACTAAGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.29
18 6 0.21
19 3 0.11
20 3 0.11
21 6 0.21
22 2 0.07
ACGTcount: A:0.56, C:0.20, G:0.09, T:0.15
Consensus pattern (20 bp):
TATACAAAAATGACCAAGCC
Found at i:3765306 original size:33 final size:33
Alignment explanation
Indices: 3765260--3765335 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
3765250 CTATGCTAGC
*
3765260 TGAAGATGATTGAAACCCTATAGGTGCACCAAT
1 TGAAGATGATTGAAACCCTAGAGGTGCACCAAT
* * *
3765293 TGAAGATGGTTGAAACCCTGGAGGTGCATCAAT
1 TGAAGATGATTGAAACCCTAGAGGTGCACCAAT
3765326 TGAAGATGAT
1 TGAAGATGAT
3765336 CAAAACAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.25
Consensus pattern (33 bp):
TGAAGATGATTGAAACCCTAGAGGTGCACCAAT
Found at i:3766158 original size:28 final size:28
Alignment explanation
Indices: 3766118--3766247 Score: 161
Period size: 28 Copynumber: 4.4 Consensus size: 28
3766108 TTAAAAACTT
3766118 ATGAATCAAAACATTCAAAGATTTTCAA
1 ATGAATCAAAACATTCAAAGATTTTCAA
* * *
3766146 ATGAATCAAAACAGTCAAATATCCTTTAAAAA
1 ATGAATCAAAACATTCAAAGAT--TTT--CAA
3766178 CTTATGAATCAAAACATTCAAAGATTTTCAA
1 ---ATGAATCAAAACATTCAAAGATTTTCAA
3766209 ATGAATCAAAACATTCAAAGATTTTCAA
1 ATGAATCAAAACATTCAAAGATTTTCAA
*
3766237 ATGAATTAAAA
1 ATGAATCAAAA
3766248 AAAAACTTAA
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
28 58 0.66
30 3 0.03
31 2 0.02
32 2 0.02
33 3 0.03
35 20 0.23
ACGTcount: A:0.51, C:0.14, G:0.07, T:0.28
Consensus pattern (28 bp):
ATGAATCAAAACATTCAAAGATTTTCAA
Found at i:3766174 original size:63 final size:63
Alignment explanation
Indices: 3766105--3766227 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
3766095 TAAATTAAGC
3766105 CCTTTAAAAACTTATGAATCAAAACATTCAAAGATTTTCAAATGAATCAAAACAGTCAAATAT
1 CCTTTAAAAACTTATGAATCAAAACATTCAAAGATTTTCAAATGAATCAAAACAGTCAAATAT
*
3766168 CCTTTAAAAACTTATGAATCAAAACATTCAAAGATTTTCAAATGAATCAAAACATTCAAA
1 CCTTTAAAAACTTATGAATCAAAACATTCAAAGATTTTCAAATGAATCAAAACAGTCAAA
3766228 GATTTTCAAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (63 bp):
CCTTTAAAAACTTATGAATCAAAACATTCAAAGATTTTCAAATGAATCAAAACAGTCAAATAT
Found at i:3773985 original size:217 final size:218
Alignment explanation
Indices: 3773604--3774031 Score: 671
Period size: 217 Copynumber: 2.0 Consensus size: 218
3773594 TGTTGGAGGA
* * * * * * *
3773604 ATTTCTGAAGGCTCCTTTGTTATGTGCAAGGTAAGACCTTACTATTTATGAAGGCTCCTTTGCTA
1 ATTTATGAAGGCTCCTTTGCTATATCCAAGGTAAGACCTTACCATTTATGAAGGCTCCTTTACAA
* * **
3773669 CGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCCTTTGCTATGTGTAAGGGTAAGACCTTGT
66 CGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTAA
* *
3773734 CGTTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCCTTTGC
131 CATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCCTCTGC
*
3773799 TATGTGCAAGGGTAAGGCCTACC
196 TATGTGCAAAGGTAAGGCCTACC
* *
3773822 ATTTATGAAGGCTCCTTTGCTATATCCAAGGGTAAGACCTTGCCATTTCTGAAGGCTCCTTTACA
1 ATTTATGAAGGCTCCTTTGCTATATCCAA-GGTAAGACCTTACCATTTATGAAGGCTCCTTTACA
*
3773887 ATG-GCAAGGGTAAGACCTTA-CATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTA
65 ACGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTA
*
3773950 ACATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCGTTTCTGAAGGCTCCTCTG
130 ACATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCCTCTG
3774015 CTATGTGCAAAGGTAAG
195 CTATGTGCAAAGGTAAG
3774032 ACCTTACCGC
Statistics
Matches: 191, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
217 117 0.61
218 42 0.22
219 32 0.17
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (218 bp):
ATTTATGAAGGCTCCTTTGCTATATCCAAGGTAAGACCTTACCATTTATGAAGGCTCCTTTACAA
CGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTAA
CATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCATTTCTGAAGGCTCCTCTGC
TATGTGCAAAGGTAAGGCCTACC
Found at i:3774040 original size:44 final size:44
Alignment explanation
Indices: 3773604--3774039 Score: 646
Period size: 44 Copynumber: 10.0 Consensus size: 44
3773594 TGTTGGAGGA
* *
3773604 ATTTCTGAAGGCTCCTTTGTTATGTGCAA-GGTAAGACCTTACT
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* *
3773647 ATTTATGAAGGCTCCTTTGCTACGTGCAAGGGTAAGACCTTACC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* **
3773691 ATTTCTGAAGGCTCCTTTGCTATGTGTAAGGGTAAGACCTTGTC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* *
3773735 GTTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
*
3773779 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGGCC-TACC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* * * *
3773822 ATTTATGAAGGCTCCTTTGCTATATCCAAGGGTAAGACCTTGCC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* *
3773866 ATTTCTGAAGGCTCCTTTACAATG-GCAAGGGTAAGACCTTA-C
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* *
3773908 ATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTAAC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
*
3773952 ATTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
* * *
3773996 GTTTCTGAAGGCTCCTCTGCTATGTGCAAAGGTAAGACCTTACC
1 ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
3774040 GCTTTTCGCA
Statistics
Matches: 353, Mismatches: 36, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
42 22 0.06
43 97 0.27
44 234 0.66
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (44 bp):
ATTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACC
Found at i:3777982 original size:18 final size:18
Alignment explanation
Indices: 3777955--3777989 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3777945 ATTCAGTATT
*
3777955 TGTCCCGAATGACCACTA
1 TGTCCAGAATGACCACTA
3777973 TGTCCAGAATGACCACT
1 TGTCCAGAATGACCACT
3777990 GGATACGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (18 bp):
TGTCCAGAATGACCACTA
Found at i:3778008 original size:22 final size:22
Alignment explanation
Indices: 3777974--3778094 Score: 190
Period size: 22 Copynumber: 5.5 Consensus size: 22
3777964 TGACCACTAT
* *
3777974 GTCCAGAATGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
*
3777996 GTCCTGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
*
3778018 GTCCCGAAGGACCACTGGATAT
1 GTCCCGAAGGACCACTGGATAC
*
3778040 GT-CCGAATGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
3778061 GTCCCGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
3778083 GTCCCGAAGGAC
1 GTCCCGAAGGAC
3778095 TAATATACCC
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
21 19 0.21
22 72 0.79
ACGTcount: A:0.28, C:0.29, G:0.26, T:0.17
Consensus pattern (22 bp):
GTCCCGAAGGACCACTGGATAC
Found at i:3778058 original size:65 final size:66
Alignment explanation
Indices: 3777971--3778094 Score: 232
Period size: 65 Copynumber: 1.9 Consensus size: 66
3777961 GAATGACCAC
*
3777971 TATGTCCAGAATGACCACTGGATACGTCCTGAAGGACCACTGGATACGTCCCGAAGGACCACTGG
1 TATGTCCAGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGTCCCGAAGGACCACTGG
3778036 A
66 A
3778037 TATGTCC-GAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGTCCCGAAGGAC
1 TATGTCCAGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGTCCCGAAGGAC
3778095 TAATATACCC
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
65 50 0.88
66 7 0.12
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (66 bp):
TATGTCCAGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGTCCCGAAGGACCACTGG
A
Found at i:3778059 original size:43 final size:43
Alignment explanation
Indices: 3777959--3778086 Score: 183
Period size: 43 Copynumber: 3.0 Consensus size: 43
3777949 AGTATTTGTC
* *
3777959 CCGAATGACCACT--AT--GTCCAGAATGACCACTGGATACGT
1 CCGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGT
* *
3777998 CCTGAAGGACCACTGGATACGTCCCGAAGGACCACTGGATATGT
1 CC-GAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGT
3778042 CCGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGT
1 CCGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGT
3778085 CC
1 CC
3778087 CGAAGGACTA
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
39 2 0.03
40 10 0.13
42 2 0.03
43 41 0.53
44 23 0.29
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.18
Consensus pattern (43 bp):
CCGAATGACCACTGGATACGTCCCGAAGGACCACTGGATACGT
Found at i:3782566 original size:24 final size:26
Alignment explanation
Indices: 3782534--3782582 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
3782524 TCACCCGCAA
3782534 CATCCATCCACCCAT-TA-ATATATC
1 CATCCATCCACCCATCTATATATATC
*
3782558 CATCCATCCATCCATCTATATATAT
1 CATCCATCCACCCATCTATATATAT
3782583 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.64
25 2 0.09
26 6 0.27
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (26 bp):
CATCCATCCACCCATCTATATATATC
Found at i:3782929 original size:17 final size:17
Alignment explanation
Indices: 3782880--3782929 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
3782870 TTGTTCATGT
3782880 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
*
3782897 TTTGAG----TATCAATG
1 TTTG-GTTTCTATGAATG
3782911 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
3782928 TT
1 TT
3782930 AAAAGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
17 13 0.50
18 1 0.04
ACGTcount: A:0.20, C:0.06, G:0.22, T:0.52
Consensus pattern (17 bp):
TTTGGTTTCTATGAATG
Found at i:3783704 original size:44 final size:44
Alignment explanation
Indices: 3783637--3783854 Score: 375
Period size: 44 Copynumber: 5.0 Consensus size: 44
3783627 TTGGAGGAAG
3783637 TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCA
*
3783681 TTTCTGAAGGCTCATTTGTTATGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCA
3783725 TTTCTGAAGGCT-ACTTTGCTATGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCA-TTTGCTATGTGCAAGGGTAAGACCTTACCA
*
3783769 TTTCTGAAGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCA
* * *
3783813 TTTCTGAAGGCTCCTCTGCTATGTGCATGGGTAAGACCTTAC
1 TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTAC
3783855 TGCAGGCTCC
Statistics
Matches: 167, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
43 1 0.01
44 166 0.99
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (44 bp):
TTTCTGAAGGCTCATTTGCTATGTGCAAGGGTAAGACCTTACCA
Found at i:3783895 original size:39 final size:38
Alignment explanation
Indices: 3783776--3783875 Score: 101
Period size: 44 Copynumber: 2.5 Consensus size: 38
3783766 CCATTTCTGA
* * *
3783776 AGGCTCCTTTGCTATGTGCAAGGGTAAGACCTTACCATTTCTGA
1 AGGCTCCTATGCTATGTGCATGGGTAAGACCTT---A---CTGC
*
3783820 AGGCTCCTCTGCTATGTGCATGGGTAAGACCTTACTGC
1 AGGCTCCTATGCTATGTGCATGGGTAAGACCTTACTGC
*
3783858 AGGCTCCTATGCTTTGTG
1 AGGCTCCTATGCTATGTG
3783876 TACAGGGTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
38 19 0.37
41 1 0.02
44 31 0.61
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (38 bp):
AGGCTCCTATGCTATGTGCATGGGTAAGACCTTACTGC
Found at i:3793153 original size:19 final size:20
Alignment explanation
Indices: 3793119--3793390 Score: 89
Period size: 20 Copynumber: 13.6 Consensus size: 20
3793109 AAATGACCAA
* *
3793119 CAAATTCGCGACGCGATCT-
1 CAAATTCGCAACGCGAACTC
*
3793138 CAAATTCGCAATGCGAACTC
1 CAAATTCGCAACGCGAACTC
* * *
3793158 CAATTTCGCAACGCGAATATG
1 CAAATTCGCAACGCGAA-CTC
* * * *
3793179 TAAA-TCGCAACACAAAAGT-
1 CAAATTCGCAACGC-GAACTC
* *
3793198 CAAATTCTCAACGCGATAGT-
1 CAAATTCGCAACGCGA-ACTC
* *
3793218 CAAATTCGCAACGAGATAGT-
1 CAAATTCGCAACGCGA-ACTC
*
3793238 CAAATTCGCAACGCGAATCTG
1 CAAATTCGCAACGCGAA-CTC
** *
3793259 TGAA-TCGCAACGCGAATCTG
1 CAAATTCGCAACGCGAA-CTC
** * *
3793279 TGAA-TCGCAATGCGAATCTG
1 CAAATTCGCAACGCGAA-CTC
* * *
3793299 TAAA-TCGCAACGCGAATTTG
1 CAAATTCGCAACGCGAA-CTC
* * *
3793319 TAAA-TCGCAACACAGAAGT-
1 CAAATTCGCAACGC-GAACTC
*
3793338 CAAATTCGCAACGCGATAGT-
1 CAAATTCGCAACGCGA-ACTC
* *
3793358 CAAATTCGCAACGCGGAATTT
1 CAAATTCGCAACGC-GAACTC
3793379 CAAATTCGCAAC
1 CAAATTCGCAAC
3793391 TGAATTTCGA
Statistics
Matches: 210, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
19 26 0.12
20 160 0.76
21 24 0.11
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (20 bp):
CAAATTCGCAACGCGAACTC
Found at i:3793186 original size:20 final size:20
Alignment explanation
Indices: 3793163--3793329 Score: 139
Period size: 20 Copynumber: 8.3 Consensus size: 20
3793153 AACTCCAATT
3793163 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATATGTAAA
* *
3793183 TCGCAACAC-AA-AAGTCAAA
1 TCGCAACGCGAATATGT-AAA
*
3793202 TTCTCAACGCG-ATA-GTCAAA
1 -TCGCAACGCGAATATGT-AAA
*
3793222 TTCGCAACGAG-ATA-GTCAAA
1 -TCGCAACGCGAATATGT-AAA
* *
3793242 TTCGCAACGCGAATCTGTGAA
1 -TCGCAACGCGAATATGTAAA
* *
3793263 TCGCAACGCGAATCTGTGAA
1 TCGCAACGCGAATATGTAAA
* *
3793283 TCGCAATGCGAATCTGTAAA
1 TCGCAACGCGAATATGTAAA
*
3793303 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATATGTAAA
3793323 TCGCAAC
1 TCGCAAC
3793330 ACAGAAGTCA
Statistics
Matches: 128, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.02
19 5 0.04
20 113 0.88
21 5 0.04
22 2 0.02
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAATATGTAAA
Found at i:3793246 original size:80 final size:79
Alignment explanation
Indices: 3793119--3793269 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 79
3793109 AAATGACCAA
* * * *
3793119 CAAATTCGCGACGCGATCTCAAATTCGCAATGCGAACTCCAATTTCGCAACGCGAATATGTAAAT
1 CAAATTCGCAACGCGATCTCAAATTCGCAACGAGAACTCCAAATTCGCAACGCGAATATGTAAAT
3793184 CGCAACACAAAAGT
66 CGCAACACAAAAGT
* * * * *
3793198 CAAATTCTCAACGCGATAGTCAAATTCGCAACGAGATAGT-CAAATTCGCAACGCGAATCTGTGA
1 CAAATTCGCAACGCGAT-CTCAAATTCGCAACGAGA-ACTCCAAATTCGCAACGCGAATATGTAA
3793262 ATCGCAAC
64 ATCGCAAC
3793270 GCGAATCTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 15 0.25
80 44 0.72
81 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (79 bp):
CAAATTCGCAACGCGATCTCAAATTCGCAACGAGAACTCCAAATTCGCAACGCGAATATGTAAAT
CGCAACACAAAAGT
Found at i:3793270 original size:60 final size:60
Alignment explanation
Indices: 3793206--3793372 Score: 175
Period size: 60 Copynumber: 2.8 Consensus size: 60
3793196 GTCAAATTCT
*
3793206 CAACGCGATAGTCAAATTCGCAACGAGATAGTCAAATTCGCAACGCGAATCTGTGAATCG
1 CAACGCGATAGTCAAATTCGCAACGAGATAGTCAAATTCGCAACGCGAATCTGTAAATCG
* * * *
3793266 CAACGCGAATCTGT-GAA-TCGCAATGCGA-ATCTGT-AAA-TCGCAACGCGAATTTGTAAATCG
1 CAACGCG-AT-AGTCAAATTCGCAA--CGAGAT-AGTCAAATTCGCAACGCGAATCTGTAAATCG
* *
3793326 CAACACAGA-AGTCAAATTCGCAACGCGATAGTCAAATTCGCAACGCG
1 CAACGC-GATAGTCAAATTCGCAACGAGATAGTCAAATTCGCAACGCG
3793373 GAATTTCAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
58 6 0.07
59 7 0.08
60 56 0.65
61 10 0.12
62 7 0.08
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (60 bp):
CAACGCGATAGTCAAATTCGCAACGAGATAGTCAAATTCGCAACGCGAATCTGTAAATCG
Found at i:3793397 original size:19 final size:19
Alignment explanation
Indices: 3793357--3793448 Score: 87
Period size: 19 Copynumber: 4.7 Consensus size: 19
3793347 AACGCGATAG
*
3793357 TCAAATTCGCAACGCGGAATT
1 TCAAATTCGCAA--CTGAATT
3793378 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACTGAATT
* *
3793397 TCGAATTCGCAACTAGATTT
1 TCAAATTCGCAACT-GAATT
* *
3793417 TCGAATTCGCAACACGAATT
1 TCAAATTCGCAAC-TGAATT
*
3793437 T-AATTTCGCAAC
1 TCAAATTCGCAAC
3793449 AGGTTTTAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
19 28 0.45
20 22 0.35
21 12 0.19
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (19 bp):
TCAAATTCGCAACTGAATT
Found at i:3793449 original size:19 final size:19
Alignment explanation
Indices: 3793422--3793468 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
3793412 GATTTTCGAA
3793422 TTCGCAACACGAATTTAAT
1 TTCGCAACACGAATTTAAT
** *
3793441 TTCGCAACA-GGTTTTAGT
1 TTCGCAACACGAATTTAAT
3793459 TTCGCAACAC
1 TTCGCAACAC
3793469 AAATGTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (19 bp):
TTCGCAACACGAATTTAAT
Found at i:3794414 original size:24 final size:24
Alignment explanation
Indices: 3794382--3794435 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3794372 GTATTCGAAA
3794382 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
3794406 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
3794430 TTTGAT
1 TTTGAT
3794436 GATGTGATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:3795239 original size:18 final size:18
Alignment explanation
Indices: 3795216--3795251 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3795206 AAGCAAAAGG
3795216 AAATCAAAATCACAATCA
1 AAATCAAAATCACAATCA
*
3795234 AAATCAAAATCCCAATCA
1 AAATCAAAATCACAATCA
3795252 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.25, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCACAATCA
Found at i:3795617 original size:20 final size:20
Alignment explanation
Indices: 3795592--3795717 Score: 93
Period size: 20 Copynumber: 6.5 Consensus size: 20
3795582 CACAATGCAA
3795592 TGCGAATTTGACTTTCGCGT
1 TGCGAATTTGACTTTCGCGT
*
3795612 TGCGAATTTGACTATCGC--
1 TGCGAATTTGACTTTCGCGT
** *
3795630 AACG--CTT-A-TTTCGCGT
1 TGCGAATTTGACTTTCGCGT
*
3795646 TGCGAATTTGACTTTCGCAT
1 TGCGAATTTGACTTTCGCGT
** **
3795666 TGCGAATTTGACAAAATCGCAA
1 TGCGAATTTGAC--TTTCGCGT
* *
3795688 CGCGAATTTTACTTTCGCGT
1 TGCGAATTTGACTTTCGCGT
3795708 TGCGAATTTG
1 TGCGAATTTG
3795718 TACCTTCAAC
Statistics
Matches: 78, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
14 5 0.06
15 1 0.01
16 4 0.05
18 4 0.05
19 1 0.01
20 48 0.62
22 15 0.19
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (20 bp):
TGCGAATTTGACTTTCGCGT
Found at i:3795892 original size:50 final size:52
Alignment explanation
Indices: 3795787--3795897 Score: 154
Period size: 51 Copynumber: 2.2 Consensus size: 52
3795777 ATCAACTTTT
3795787 ACAAATCAATTAAACAAGTAAAAAAATAATTCTTATTTACACATCAAATTAA
1 ACAAATCAATTAAACAAGTAAAAAAATAATTCTTATTTACACATCAAATTAA
* * * * * *
3795839 ACAAATCAATTAAACATG-CAAAAAATAATTGTTATTTCCTCTTC-AATTAA
1 ACAAATCAATTAAACAAGTAAAAAAATAATTCTTATTTACACATCAAATTAA
3795889 ACAAATCAA
1 ACAAATCAA
3795898 CTTTCAATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 15 0.28
51 21 0.40
52 17 0.32
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30
Consensus pattern (52 bp):
ACAAATCAATTAAACAAGTAAAAAAATAATTCTTATTTACACATCAAATTAA
Found at i:3797372 original size:42 final size:42
Alignment explanation
Indices: 3797276--3797372 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
3797266 GGGCGAGACA
*
3797276 TCTTGAATGATGACAGGGGCCTCTTGAACTGTGGGAGGGGCC
1 TCTTGAATGATGACAGGGGCCTCTTGAACTGTAGGAGGGGCC
* * *
3797318 TCTTCG-ATGATGAGATGGGCCTCTTGAAC-GATAGGAGGTGCC
1 TCTT-GAATGATGACAGGGGCCTCTTGAACTG-TAGGAGGGGCC
*
3797360 TCTTGAACGATGA
1 TCTTGAATGATGA
3797373 TAGGTGCATC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
41 2 0.04
42 44 0.94
43 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.26
Consensus pattern (42 bp):
TCTTGAATGATGACAGGGGCCTCTTGAACTGTAGGAGGGGCC
Found at i:3797379 original size:21 final size:21
Alignment explanation
Indices: 3797276--3797372 Score: 92
Period size: 21 Copynumber: 4.6 Consensus size: 21
3797266 GGGCGAGACA
* *
3797276 TCTTGAATGATGACAGGGGCC
1 TCTTGAACGATGAGAGGGGCC
*
3797297 TCTTGAACTG-TGGGAGGGGCC
1 TCTTGAAC-GATGAGAGGGGCC
* *
3797318 TCTTCG-ATGATGAGATGGGCC
1 TCTT-GAACGATGAGAGGGGCC
*
3797339 TCTTGAACGAT-AGGAGGTGCC
1 TCTTGAACGATGA-GAGGGGCC
3797360 TCTTGAACGATGA
1 TCTTGAACGATGA
3797373 TAGGTGCATC
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
20 3 0.05
21 55 0.90
22 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.26
Consensus pattern (21 bp):
TCTTGAACGATGAGAGGGGCC
Found at i:3800020 original size:22 final size:22
Alignment explanation
Indices: 3799987--3800037 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
3799977 AGATAGATGA
3799987 ATTTCGCTGGAGATGGGGACGG
1 ATTTCGCTGGAGATGGGGACGG
*
3800009 ATTTCG-TCGGAGATGGGGACAG
1 ATTTCGCT-GGAGATGGGGACGG
*
3800031 ATGTCGC
1 ATTTCGC
3800038 CGTAGAGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.24
Consensus pattern (22 bp):
ATTTCGCTGGAGATGGGGACGG
Found at i:3800228 original size:20 final size:20
Alignment explanation
Indices: 3800148--3800234 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
3800138 TGTGTTTCGC
* * *
3800148 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTTTTGT
*
3800168 ATTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTTTGT
3800188 GTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTTTGT
3800208 GTTGCGAATTTGA-TTTCTGT
1 GTTGCGAATTTGACTTT-TGT
3800228 GTTGCGA
1 GTTGCGA
3800235 TTTACAAATT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
19 3 0.05
20 58 0.95
ACGTcount: A:0.17, C:0.13, G:0.25, T:0.45
Consensus pattern (20 bp):
GTTGCGAATTTGACTTTTGT
Found at i:3800251 original size:20 final size:20
Alignment explanation
Indices: 3800228--3800274 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
3800218 TGATTTCTGT
*
3800228 GTTGCGATTTACAAATTTGC
1 GTTGCGATTTACAAATTCGC
*
3800248 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAAATTCGC
3800268 GTTGCGA
1 GTTGCGA
3800275 AATTGGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (20 bp):
GTTGCGATTTACAAATTCGC
Found at i:3800252 original size:40 final size:40
Alignment explanation
Indices: 3800148--3800254 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 40
3800138 TGTGTTTCGC
* *
3800148 GTTGCGAATTTGAC-TATCGCATTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACAT-TTGCGTTGCGAATTTGACTTTTGT
* *
3800188 GTTGCGAATTTGACTTTTGTGTTGCGAATTTGA-TTTCTGT
1 GTTGCGAATTTGACATTTGCGTTGCGAATTTGACTTT-TGT
3800228 GTTGCG-ATTT-ACAAATTTGCGTTGCGA
1 GTTGCGAATTTGAC--ATTTGCGTTGCGA
3800255 TTTACAGATT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 7 0.12
40 48 0.83
41 1 0.02
ACGTcount: A:0.19, C:0.13, G:0.24, T:0.44
Consensus pattern (40 bp):
GTTGCGAATTTGACATTTGCGTTGCGAATTTGACTTTTGT
Found at i:3800311 original size:20 final size:20
Alignment explanation
Indices: 3800264--3800315 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
3800254 ATTTACAGAT
3800264 TCGCGTTGCGAAATTGGAAA
1 TCGCGTTGCGAAATTGGAAA
* * * *
3800284 TTGGGTTGCGAAATTTGAGA
1 TCGCGTTGCGAAATTGGAAA
3800304 TCGCGTTGCGAA
1 TCGCGTTGCGAA
3800316 TTTTTTGGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (20 bp):
TCGCGTTGCGAAATTGGAAA
Found at i:3802645 original size:44 final size:44
Alignment explanation
Indices: 3802541--3802850 Score: 285
Period size: 43 Copynumber: 7.2 Consensus size: 44
3802531 TGTGATATAA
* * * *
3802541 AAACGCCGTAAAAAGTCAAGATCTATAGAGGCGTTTTTGGA-AC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
* *
3802584 AAACGTCGCAAAATGTCGAGATCTATAGCGGCGTTTTTGGATAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
* * * * **
3802628 AAACGCCGCAAAATGTCGAGTTCTCTAGCGGTGTTTTTTCCA-A-
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCG-TTTTTGGATAC
* ** *
3802671 AAACGCCGCAAAAGG--GTAGATATATAGTAGCGTTATTGGATAC
1 AAACGCCGCAAAAGGTCG-AGATCTATAGCGGCGTTTTTGGATAC
* * * *
3802714 AAACGCCACAAAAGGTCAAGATCTATAGCGG-GTTTTTGGAAAA
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
* * * * * *
3802757 AAATGCCGCAAAAGGT-TAGTTATATAGTGGCATTTTTGGATAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
* *
3802800 AAACGCCGCAAAAGGTC-AGATATATAGCGGCGTTTATTGGATAT
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTT-TTGGATAC
3802844 AAACGCC
1 AAACGCC
3802851 TAATTACCAT
Statistics
Matches: 214, Mismatches: 43, Indels: 19
0.78 0.16 0.07
Matches are distributed among these distances:
41 6 0.03
42 20 0.09
43 126 0.59
44 56 0.26
45 6 0.03
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (44 bp):
AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
Found at i:3812451 original size:28 final size:28
Alignment explanation
Indices: 3812410--3812474 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
3812400 TTATAGAAAT
* * *
3812410 TAGGGACCTCATTATAAATATAAAAAAC
1 TAGGGCCCTAATTATAAATACAAAAAAC
* *
3812438 TGGGGCCCTAATTATAAATACAAAAAAT
1 TAGGGCCCTAATTATAAATACAAAAAAC
3812466 TAGGGCCCT
1 TAGGGCCCT
3812475 GAGCGGTTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (28 bp):
TAGGGCCCTAATTATAAATACAAAAAAC
Found at i:3820138 original size:28 final size:30
Alignment explanation
Indices: 3820083--3820138 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
3820073 CAAAAATTGA
* *
3820083 TTAGTGATTAAAATGTAAATTTGTGGAAGT
1 TTAGTGATTAAAATGAAAAATTGTGGAAGT
3820113 TTAGTGATTAAAAT-AAAAATT-TGGAA
1 TTAGTGATTAAAATGAAAAATTGTGGAA
3820139 AAATTTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 5 0.21
30 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.38
Consensus pattern (30 bp):
TTAGTGATTAAAATGAAAAATTGTGGAAGT
Found at i:3820146 original size:30 final size:30
Alignment explanation
Indices: 3820083--3820146 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
3820073 CAAAAATTGA
** * *
3820083 TTAGTGATTAAAATGTAAATTTGTGGAAGT
1 TTAGTGATTAAAATAAAAATTTGTGAAAAT
3820113 TTAGTGATTAAAATAAAAATTTG-GAAAAAT
1 TTAGTGATTAAAATAAAAATTTGTG-AAAAT
3820143 TTAG
1 TTAG
3820147 GGACCAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (30 bp):
TTAGTGATTAAAATAAAAATTTGTGAAAAT
Found at i:3822662 original size:23 final size:23
Alignment explanation
Indices: 3822632--3822690 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
3822622 TGGGTACTTC
*
3822632 TGTATCAGTGTTTTATGCACTCT
1 TGTATCAGTGTATTATGCACTCT
* *
3822655 TGTATCAGTGCCATTGTGCACTCT
1 TGTATCAGTG-TATTATGCACTCT
*
3822679 TGAATCAGTGTA
1 TGTATCAGTGTA
3822691 ATTGTGGACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (23 bp):
TGTATCAGTGTATTATGCACTCT
Found at i:3822694 original size:24 final size:24
Alignment explanation
Indices: 3822647--3822696 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
3822637 CAGTGTTTTA
* *
3822647 TGCACTCTTGTATCAGTGCCATTG
1 TGCACTCTTGAATCAGTGCAATTG
*
3822671 TGCACTCTTGAATCAGTGTAATTG
1 TGCACTCTTGAATCAGTGCAATTG
3822695 TG
1 TG
3822697 GACTTCTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (24 bp):
TGCACTCTTGAATCAGTGCAATTG
Found at i:3822729 original size:24 final size:24
Alignment explanation
Indices: 3822702--3822764 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 24
3822692 TTGTGGACTT
3822702 CTGTATTAGTGCGAA-TGCACACTC
1 CTGTATTAGTGC-AACTGCACACTC
* **
3822726 CTGTA-TACTGCAACTGTGCACTC
1 CTGTATTAGTGCAACTGCACACTC
3822749 CTGTATTAGTGCAACT
1 CTGTATTAGTGCAACT
3822765 TTGCACTCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.06
23 17 0.52
24 14 0.42
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (24 bp):
CTGTATTAGTGCAACTGCACACTC
Found at i:3822749 original size:23 final size:24
Alignment explanation
Indices: 3822721--3822773 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
3822711 TGCGAATGCA
3822721 CACTCCTGTA-TACTGCAACTGTG
1 CACTCCTGTATTACTGCAACTGTG
* *
3822744 CACTCCTGTATTAGTGCAACTTTG
1 CACTCCTGTATTACTGCAACTGTG
3822768 CACTCC
1 CACTCC
3822774 CGAAATTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (24 bp):
CACTCCTGTATTACTGCAACTGTG
Found at i:3836676 original size:11 final size:11
Alignment explanation
Indices: 3836642--3836679 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
3836632 AGAGAAAATA
3836642 TTTTCATTCTT
1 TTTTCATTCTT
*
3836653 TATTCATTCTT
1 TTTTCATTCTT
3836664 TTTTCATTCTT
1 TTTTCATTCTT
3836675 TTTTC
1 TTTTC
3836680 TTGTACATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTCATTCTT
Found at i:3838060 original size:28 final size:28
Alignment explanation
Indices: 3838003--3838057 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
3837993 TCATTAAACC
3838003 TTTTTTATATTTTTTATTTTATAAAAAA
1 TTTTTTATATTTTTTATTTTATAAAAAA
3838031 TTTTTTATA-TTTTTATTTTATAAAAAA
1 TTTTTTATATTTTTTATTTTATAAAAAA
3838058 ATTATATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTTTTATATTTTTTATTTTATAAAAAA
Found at i:3838072 original size:26 final size:27
Alignment explanation
Indices: 3838016--3838072 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
3838006 TTTATATTTT
* * * *
3838016 TTATTTTATAAAAAATTTTTTATATTT
1 TTATTTTATAAAAAATATTATATAATA
3838043 TTATTTTATAAAAAA-ATTATATAATA
1 TTATTTTATAAAAAATATTATATAATA
3838069 TTAT
1 TTAT
3838073 GAATTTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TTATTTTATAAAAAATATTATATAATA
Found at i:3838306 original size:20 final size:18
Alignment explanation
Indices: 3838252--3838294 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
3838242 CCAGTAATCC
3838252 TATTCCCTAGTAATCTTT
1 TATTCCCTAGTAATCTTT
3838270 TATTCCCTAGTAATCTTT
1 TATTCCCTAGTAATCTTT
3838288 TATTCCC
1 TATTCCC
3838295 ACTGATAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.05, T:0.49
Consensus pattern (18 bp):
TATTCCCTAGTAATCTTT
Found at i:3840406 original size:22 final size:23
Alignment explanation
Indices: 3840380--3840431 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
3840370 TTGAAAAACG
* *
3840380 ATTTTGAG-CTCTCAAAAATAAA
1 ATTTTAAGTCTCTCAAAAAGAAA
* *
3840402 ATTTTAAGTTTTTCAAAAAGAAA
1 ATTTTAAGTCTCTCAAAAAGAAA
3840425 ATTTTAA
1 ATTTTAA
3840432 TTTGAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (23 bp):
ATTTTAAGTCTCTCAAAAAGAAA
Found at i:3842271 original size:35 final size:35
Alignment explanation
Indices: 3842225--3842293 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
3842215 AAGGATTTTT
*
3842225 ATTCCTTGTCAAAAGCATTTAATCTGAATAATTTA
1 ATTCCTTGTCAAAAGCATTTAATCCGAATAATTTA
*
3842260 ATTCCTTGTCAAAAGCATTTTATCCGAATAATTT
1 ATTCCTTGTCAAAAGCATTTAATCCGAATAATTT
3842294 CACACCAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.41
Consensus pattern (35 bp):
ATTCCTTGTCAAAAGCATTTAATCCGAATAATTTA
Found at i:3846612 original size:12 final size:11
Alignment explanation
Indices: 3846584--3846610 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
3846574 GAAATAATCC
3846584 TTAAATTATTT
1 TTAAATTATTT
3846595 TTAAATTATTT
1 TTAAATTATTT
3846606 TTAAA
1 TTAAA
3846611 ATAATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTAAATTATTT
Found at i:3849955 original size:13 final size:13
Alignment explanation
Indices: 3849939--3849975 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
3849929 TTTAATATTT
3849939 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
3849952 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
3849965 ATCGGGGCGGG
1 ATCGGGGCGGG
3849976 GATTACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.14, C:0.16, G:0.57, T:0.14
Consensus pattern (13 bp):
ATCGGGGCGGGTA
Found at i:3850632 original size:4 final size:4
Alignment explanation
Indices: 3850623--3850708 Score: 118
Period size: 4 Copynumber: 21.5 Consensus size: 4
3850613 GAAATAATAC
* * * *
3850623 ATAT ATAT ATAT ATAC ATAT ATAC ATAT ATAT ATAT ATAC ATAT ATAC
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* *
3850671 ATAT ATAT ATAT ATAT ATAC ATAC ATAT ATAT ATAT AT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT AT
3850709 TGATTTTATT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 72 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (4 bp):
ATAT
Found at i:3850651 original size:24 final size:24
Alignment explanation
Indices: 3850619--3850708 Score: 162
Period size: 24 Copynumber: 3.8 Consensus size: 24
3850609 GTTTGAAATA
3850619 ATACATATATATATATATACATAT
1 ATACATATATATATATATACATAT
3850643 ATACATATATATATATATACATAT
1 ATACATATATATATATATACATAT
* *
3850667 ATACATATATATATATATATATAC
1 ATACATATATATATATATACATAT
3850691 ATACATATATATATATAT
1 ATACATATATATATATAT
3850709 TGATTTTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (24 bp):
ATACATATATATATATATACATAT
Found at i:3855792 original size:20 final size:20
Alignment explanation
Indices: 3855767--3855822 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 20
3855757 ACCCCTTGCA
3855767 TTTTGCATATGCATTTTACT
1 TTTTGCATATGCATTTTACT
3855787 TTTTGCAT-TGCATTTTACT
1 TTTTGCATATGCATTTTACT
*
3855806 TTTCGCA-ATGCATTTTA
1 TTTTGCATATGCATTTTA
3855823 TCAATGTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 26 0.76
20 8 0.24
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTTGCATATGCATTTTACT
Found at i:3856655 original size:2 final size:2
Alignment explanation
Indices: 3856648--3856679 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
3856638 CCTCCCCGAT
3856648 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3856680 TTTTTATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3856768 original size:9 final size:9
Alignment explanation
Indices: 3856756--3856800 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
3856746 ATATATAATA
3856756 TTTTATATT
1 TTTTATATT
3856765 TTTTATATAT
1 TTTTATAT-T
* *
3856775 ATTTATAAT
1 TTTTATATT
3856784 TTTTATATT
1 TTTTATATT
3856793 TTTTATAT
1 TTTTATAT
3856801 ATATAATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 24 0.77
10 7 0.23
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTATATT
Found at i:3856773 original size:21 final size:19
Alignment explanation
Indices: 3856747--3856823 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
3856737 CCCGATTATA
*
3856747 TATATAATATTTTATATTTTT
1 TATAT-ATA-TTTATAATTTT
3856768 TATATATATTTATAATTTT
1 TATATATATTTATAATTTT
* *
3856787 TATAT-T-TTT-T-ATATA
1 TATATATATTTATAATTTT
3856802 TATA-ATATTTAT-ATTTT
1 TATATATATTTATAATTTT
3856819 TATAT
1 TATAT
3856824 TAATTATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
15 8 0.17
16 4 0.09
17 11 0.23
18 1 0.02
19 15 0.32
20 3 0.06
21 5 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TATATATATTTATAATTTT
Found at i:3856796 original size:28 final size:29
Alignment explanation
Indices: 3856743--3856839 Score: 117
Period size: 28 Copynumber: 3.3 Consensus size: 29
3856733 TTTCCCCGAT
3856743 TATATATATAATATTTTATATTTTTTATA
1 TATATATATAATATTTTATATTTTTTATA
*
3856772 TATATTTATAAT-TTTTATATTTTTTATA
1 TATATATATAATATTTTATATTTTTTATA
* **
3856800 TATATAATATTTATATTTTTATATTAATTATA
1 TATAT-ATA-TAATA-TTTTATATTTTTTATA
3856832 TATA-ATAT
1 TATATATAT
3856840 CAGGATCGGG
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
28 21 0.36
29 14 0.24
30 6 0.10
32 18 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (29 bp):
TATATATATAATATTTTATATTTTTTATA
Found at i:3856831 original size:26 final size:26
Alignment explanation
Indices: 3856749--3856831 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 26
3856739 CGATTATATA
*
3856749 TATAATATTTTATATTTTTTATATATATT
1 TATAATA-TTTATA-TTTTTATAT-TAAT
*
3856778 TATAATTTTTATATTTTT-TA-T-AT
1 TATAATATTTATATTTTTATATTAAT
3856801 ATATAATATTTATATTTTTATATTAAT
1 -TATAATATTTATATTTTTATATTAAT
3856828 TATA
1 TATA
3856832 TATAATATCA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
23 1 0.02
24 18 0.38
25 2 0.04
26 7 0.15
27 7 0.15
28 6 0.13
29 6 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (26 bp):
TATAATATTTATATTTTTATATTAAT
Found at i:3858926 original size:13 final size:13
Alignment explanation
Indices: 3858908--3858932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3858898 AAGAAAAAAT
3858908 AAAAAAAGAGAAC
1 AAAAAAAGAGAAC
3858921 AAAAAAAGAGAA
1 AAAAAAAGAGAA
3858933 GAAGAAGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAGAAC
Found at i:3860649 original size:134 final size:133
Alignment explanation
Indices: 3860445--3860829 Score: 429
Period size: 134 Copynumber: 2.9 Consensus size: 133
3860435 GAATATGATC
* * *
3860445 TCCCCTAAAGAGTAGTGGAGCAGATCCTCTTTATT-TTGGATTTGGTCTTCCTGAAGAGAGGTGA
1 TCCCCTAAAGAGTAGTGGAGCAGATCCTCTTTTTTCTTAGATTTGGTCTTCCTGAAGAGAAGTGA
* *
3860509 AACAAATCAAGTTCGATTCAATCTTCCCTGAAGAACAACGAAGTGGATCAAAAAATTTGAAGTCT
66 AGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAACAACGAAGTGGATCAAAAAAATTGAAGT-T
*
3860574 GATA
130 CATA
** * * * *
3860578 TTTCCTAAAGAGTAGTGGAGCATATCCT-TATTTTTCTTATATTTGGTCTTCCTGAAAAGAAGTT
1 TCCCCTAAAGAGTAGTGGAGCAGATCCTCT-TTTTTCTTAGATTTGGTCTTCCTGAAGAGAAGTG
* * *
3860642 AAGCAAATCAAGTTCGATTCAATATTCCCTGAAGAGA-AACAAAGTGGATCAAAAAAAAATTGAG
65 AAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGA-ACAACGAAGTGGATC--AAAAAAATTGAA
3860706 GTTCATA
127 GTTCATA
* * * *
3860713 TCCCCTAAAGAGTAGTAGAGCAGATCCTCTTGCTTTC--AGATTTGGCCTTCCTGAAGAGCAGTG
1 TCCCCTAAAGAGTAGTGGAGCAGATCCTCTT-TTTTCTTAGATTTGGTCTTCCTGAAGAGAAGTG
* * * * ** * * *
3860776 AAGCAAATCGACTTTGATTCAACCTTCCCTGTGGAGCAGCGAAGTGAATCAAAA
65 AAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAACAACGAAGTGGATCAAAA
3860830 TTTTCCAAAT
Statistics
Matches: 208, Mismatches: 36, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
132 5 0.02
133 29 0.14
134 127 0.61
135 30 0.14
136 17 0.08
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (133 bp):
TCCCCTAAAGAGTAGTGGAGCAGATCCTCTTTTTTCTTAGATTTGGTCTTCCTGAAGAGAAGTGA
AGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAACAACGAAGTGGATCAAAAAAATTGAAGTTC
ATA
Found at i:3862727 original size:30 final size:29
Alignment explanation
Indices: 3862691--3862750 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
3862681 TTGTCCTAAT
*
3862691 TTAGA-TTACTTTATCTTTTAGATTTAGTCC
1 TTAGATTTACATT-TCTTTTA-ATTTAGTCC
*
3862721 TTAGATTTAGATTTCTTTTAATTTAGTCC
1 TTAGATTTACATTTCTTTTAATTTAGTCC
3862750 T
1 T
3862751 GTGTTAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 10 0.37
30 12 0.44
31 5 0.19
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (29 bp):
TTAGATTTACATTTCTTTTAATTTAGTCC
Found at i:3863023 original size:36 final size:36
Alignment explanation
Indices: 3862956--3863025 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
3862946 TTTTATTAAT
*
3862956 ATATATATAGTATAATTTTTGAAAATATTTTTAAAA
1 ATATATATAGTATAATTTTTGAAAAGATTTTTAAAA
*
3862992 ATATA-ATA-TATAATTTTTAGAAAACGGTTTTTAA
1 ATATATATAGTATAATTTTT-GAAAA-GATTTTTAA
3863026 TGATCGTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 10 0.33
35 8 0.27
36 12 0.40
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (36 bp):
ATATATATAGTATAATTTTTGAAAAGATTTTTAAAA
Found at i:3865096 original size:49 final size:49
Alignment explanation
Indices: 3865024--3865122 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
3865014 TCACTTGGAA
3865024 TCTTACCATGACTTCAAGGGGATTCATCTGCCACGAAAGCACAAGCCTT
1 TCTTACCATGACTTCAAGGGGATTCATCTGCCACGAAAGCACAAGCCTT
3865073 TCTTACCATGACTTCAAGGGGATTCATCTGCCACGAAAGCACAAGCCTT
1 TCTTACCATGACTTCAAGGGGATTCATCTGCCACGAAAGCACAAGCCTT
3865122 T
1 T
3865123 GTAACCAACC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TCTTACCATGACTTCAAGGGGATTCATCTGCCACGAAAGCACAAGCCTT
Found at i:3866129 original size:36 final size:35
Alignment explanation
Indices: 3866085--3866158 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 35
3866075 CAACATCCTG
* *
3866085 TTTGAACTTGTTTTTTGAATTTTCTCATATTTCTT
1 TTTGAACTTGTCTTTTGAACTTTCTCATATTTCTT
*
3866120 TTTGTAACTTGTCTTTTGAACTTTCTCGTATTTCTT
1 TTTG-AACTTGTCTTTTGAACTTTCTCATATTTCTT
3866156 TTT
1 TTT
3866159 ATATGGATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
35 4 0.11
36 31 0.89
ACGTcount: A:0.15, C:0.14, G:0.09, T:0.62
Consensus pattern (35 bp):
TTTGAACTTGTCTTTTGAACTTTCTCATATTTCTT
Found at i:3866619 original size:116 final size:116
Alignment explanation
Indices: 3866414--3866649 Score: 454
Period size: 116 Copynumber: 2.0 Consensus size: 116
3866404 TAGGTATGCA
*
3866414 TAGGAGCAGACAACATGGGGAATCCCTTGCGTATGACATTATTATACTTTTGTTGAAGACTTTCA
1 TAGGAGCAGACAACATGGGGAATCCCTTGCGTATGACATTATTATACTTTTGTTGAAGACGTTCA
*
3866479 ATGATGATCATGATCTTTATAGATGGAACAGTTGAGTGGATGAATCTAATT
66 ATGATGATCATGATCTTTACAGATGGAACAGTTGAGTGGATGAATCTAATT
3866530 TAGGAGCAGACAACATGGGGAATCCCTTGCGTATGACATTATTATACTTTTGTTGAAGACGTTCA
1 TAGGAGCAGACAACATGGGGAATCCCTTGCGTATGACATTATTATACTTTTGTTGAAGACGTTCA
3866595 ATGATGATCATGATCTTTACAGATGGAACAGTTGAGTGGATGAATCTAATT
66 ATGATGATCATGATCTTTACAGATGGAACAGTTGAGTGGATGAATCTAATT
3866646 TAGG
1 TAGG
3866650 TCGGTTGCTG
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (116 bp):
TAGGAGCAGACAACATGGGGAATCCCTTGCGTATGACATTATTATACTTTTGTTGAAGACGTTCA
ATGATGATCATGATCTTTACAGATGGAACAGTTGAGTGGATGAATCTAATT
Found at i:3866887 original size:99 final size:99
Alignment explanation
Indices: 3866772--3866974 Score: 325
Period size: 99 Copynumber: 2.1 Consensus size: 99
3866762 TTATAATATT
* * * * *
3866772 ATATGTATACAGTAAAGCTTGAGTTATCCCTCTAGAGAAATTGGTTAAACGCCCCGACTTTATGG
1 ATATTTATACAATAAAGCTTGAGTTATCCCTCTAAAGAAATTGGCTAAACGCCCCAACTTTATGG
3866837 ATAAGATTCAGCTAGCTTGATAAAGGTGATTATA
66 ATAAGATTCAGCTAGCTTGATAAAGGTGATTATA
* * *
3866871 ATATTTATACAATAAAGCTTGAGTTGTCCCTCTAAAGTAATTGGCTAAACGCCCTAACTTTATGG
1 ATATTTATACAATAAAGCTTGAGTTATCCCTCTAAAGAAATTGGCTAAACGCCCCAACTTTATGG
*
3866936 ATAAGATTTAGCTAGCTTGATAAAGGTGATTATA
66 ATAAGATTCAGCTAGCTTGATAAAGGTGATTATA
3866970 ATATT
1 ATATT
3866975 GAGCTGTCCC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (99 bp):
ATATTTATACAATAAAGCTTGAGTTATCCCTCTAAAGAAATTGGCTAAACGCCCCAACTTTATGG
ATAAGATTCAGCTAGCTTGATAAAGGTGATTATA
Found at i:3868466 original size:169 final size:170
Alignment explanation
Indices: 3868067--3868706 Score: 684
Period size: 169 Copynumber: 3.8 Consensus size: 170
3868057 TAAAGGAACT
* * * * *
3868067 ATTTACAGCATAGCTCAAGGCAAG-AAGGATAATATATATCAATAAAAACCTTCGAGGTCGATTA
1 ATTTACAGCATAACTCAAGGCGAGAAAGG-T--TATCTCTCAATAAAAACCTTCGAGTTCGATTA
* * * * * *
3868131 TATTCATCTCAATGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAAGGCTATCTGTCAACG
63 CATTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACA
*
3868196 AAGACCTTCGAGTTCGATTATATTCAGCTCAAAGACATATCAA
128 AAAACCTTCGAGTTCGATTATATTCAGCTCAAAGACATATCAA
* * * ** *
3868239 ATTTACAACATAACTCAGGGCGAGAAGGGTTATCTGC-C-AGCAAAACCTTTGAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCT-CTCAATAAAAACCTTCGAGTTCGATTACA
* * * * * * *
3868302 TTCAGCTCAAGGACATATTAAATTTACAGCATAACTCAAGGCAATAAGGGTTATCAG-CTAGC-A
65 TTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTC-AACAA
* *
3868365 AAACGTTCGAGTTCGATTATATTCAGCTCAATGACATATCAA
129 AAACCTTCGAGTTCGATTATATTCAGCTCAAAGACATATCAA
3868407 ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCTCTCAATAAAAACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCTCTCAATAAAAACCTTCGAGTTCGATTACAT
* * *
3868472 TCAACTCAAGGGCATATCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAA
66 TCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAAC-AAA
* * * * ** *
3868537 AACCTTTGAGTTCGATTCA-ATTCAGTTCAAGGGCA-GCCGA
130 AACCTTCGAGTTCGATT-ATATTCAGCTCAAAGACATATCAA
** * * * * * * * *
3868577 ATTTACAGCATAGTTTAAGTCGAGAAGGGCTATCTGTCAACAAAATCCTTCGAGTTCGATTCCAT
1 ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCTCTCAATAAAAACCTTCGAGTTCGATTACAT
* * * * * *
3868642 TCAGCTCAAGGGCAT-CCAAATTTACAGCATAGCTTAAGACAATAAGGGTTATCTGTAAACAAAA
66 TCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACAAAA
3868706 A
131 A
3868707 AACTTTCCGG
Statistics
Matches: 390, Mismatches: 69, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
167 1 0.00
168 79 0.20
169 178 0.46
170 77 0.20
171 30 0.08
172 22 0.06
173 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (170 bp):
ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCTCTCAATAAAAACCTTCGAGTTCGATTACAT
TCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACAAAA
ACCTTCGAGTTCGATTATATTCAGCTCAAAGACATATCAA
Found at i:3868673 original size:84 final size:84
Alignment explanation
Indices: 3868067--3868705 Score: 665
Period size: 84 Copynumber: 7.5 Consensus size: 84
3868057 TAAAGGAACT
* * * * * * *
3868067 ATTTACAGCATAGCTCAAGGCAAGAAGGATAATATATATCAATAAAAACCTTCGAGGTCGATTAT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGT--TATCTGTCAA-CAAAACCTTCGAGTTCGATTAC
* *
3868132 ATTCATCTCAATGGCATATCAA
63 ATTCAGCTCAAGGGCATATCAA
* * * *
3868154 ATTTACAGCATAGCTCAAGGCGAGAAAGGCTATCTGTCAACGAAGACCTTCGAGTTCGATTATAT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAAC-AAAACCTTCGAGTTCGATTACAT
* *
3868219 TCAGCTCAAAGACATATCAA
65 TCAGCTCAAGGGCATATCAA
* * * * * *
3868239 ATTTACAACATAACTCAGGGCGAGAAGGGTTATCTGCCAGCAAAACCTTTGAGTTCGATTACATT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGATTACATT
* *
3868304 CAGCTCAAGGACATATTAA
66 CAGCTCAAGGGCATATCAA
* * * * * * *
3868323 ATTTACAGCATAACTCAAGGCAATAAGGGTTATCAG-CTAGCAAAACGTTCGAGTTCGATTATAT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTC-AACAAAACCTTCGAGTTCGATTACAT
* *
3868387 TCAGCTCAATGACATATCAA
65 TCAGCTCAAGGGCATATCAA
* * * *
3868407 ATTTACAGCATAACTCAAGGCGAGAAAGGTTATCTCTCAATAAAAACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAA-CAAAACCTTCGAGTTCGATTACAT
*
3868472 TCAACTCAAGGGCATATCAA
65 TCAGCTCAAGGGCATATCAA
* * *
3868492 ATTTACAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAAACCTTTGAGTTCGATT-CA
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAAC--AAAACCTTCGAGTTCGATTAC-
* ** *
3868556 ATTCAGTTCAAGGGCA-GCCGA
63 ATTCAGCTCAAGGGCATATCAA
* * * * *
3868577 ATTTACAGCATAGTTTAAGTCGAGAAGGGCTATCTGTCAACAAAATCCTTCGAGTTCGATTCCAT
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAA-CCTTCGAGTTCGATTACAT
*
3868642 TCAGCTCAAGGGCAT-CCAA
65 TCAGCTCAAGGGCATATCAA
* * * * *
3868661 ATTTACAGCATAGCTTAAGACAATAAGGGTTATCTGTAAACAAAA
1 ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAA
3868706 AAACTTTCCG
Statistics
Matches: 471, Mismatches: 71, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
83 5 0.01
84 213 0.45
85 195 0.41
86 32 0.07
87 26 0.06
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (84 bp):
ATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGATTACATT
CAGCTCAAGGGCATATCAA
Found at i:3870893 original size:25 final size:25
Alignment explanation
Indices: 3870855--3870927 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
3870845 AAAGGAAAGC
*
3870855 AAATATTTTATATATATTAACTTAA
1 AAATATTTTTTATATATTAACTTAA
* *
3870880 AAAT-GTTTTT-TATATTAACTTATT
1 AAATATTTTTTATATATTAACTTA-A
*
3870904 AAATATATTTTAT-TATTAACTTAA
1 AAATATTTTTTATATATTAACTTAA
3870928 TTTAAAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
23 12 0.31
24 8 0.21
25 18 0.46
26 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (25 bp):
AAATATTTTTTATATATTAACTTAA
Done.