Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8285662
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 35
Found at i:6743633 original size:43 final size:43
Alignment explanation
Indices: 6743585--6743670 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
6743575 TTGGTTTTCG
6743585 ATGTTTTTGGGATTGACACTTTTTATATATGGATCGACACTTT
1 ATGTTTTTGGGATTGACACTTTTTATATATGGATCGACACTTT
6743628 ATGTTTTTGGGATTGACACTTTTTATATATGGATCGACACTTT
1 ATGTTTTTGGGATTGACACTTTTTATATATGGATCGACACTTT
6743671 TCTCATCTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.47
Consensus pattern (43 bp):
ATGTTTTTGGGATTGACACTTTTTATATATGGATCGACACTTT
Found at i:6743645 original size:22 final size:22
Alignment explanation
Indices: 6743585--6743649 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
6743575 TTGGTTTTCG
6743585 ATGTTTTTGGGATTGACACTTT
1 ATGTTTTTGGGATTGACACTTT
* * * * *
6743607 TTATATAT-GGATCGACACTTT
1 ATGTTTTTGGGATTGACACTTT
6743628 ATGTTTTTGGGATTGACACTTT
1 ATGTTTTTGGGATTGACACTTT
6743650 TTATATATGG
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (22 bp):
ATGTTTTTGGGATTGACACTTT
Found at i:6743744 original size:19 final size:19
Alignment explanation
Indices: 6743698--6743746 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
6743688 TTATATTCAC
*
6743698 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
6743717 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
6743736 ATACAAAATTA
1 ATACAAAATTA
6743747 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:6745573 original size:33 final size:33
Alignment explanation
Indices: 6745536--6745601 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
6745526 CATCTTAATA
*
6745536 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
6745569 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
6745602 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:6745659 original size:21 final size:21
Alignment explanation
Indices: 6745634--6745677 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6745624 CCCCTTATGC
6745634 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
6745655 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
6745676 CT
1 CT
6745678 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:6747911 original size:17 final size:18
Alignment explanation
Indices: 6747889--6747931 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
6747879 ATATATCCGG
6747889 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
6747906 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
6747926 TATCAT
1 TATCAT
6747932 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:6747949 original size:20 final size:19
Alignment explanation
Indices: 6747894--6747940 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
6747884 TCCGGTATCA
6747894 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
6747913 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
6747934 TTTTACC
1 TTTTACC
6747941 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:6748102 original size:20 final size:20
Alignment explanation
Indices: 6748075--6748121 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
6748065 TCCGGTAACG
6748075 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
6748094 TTATTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
6748115 TTTTACC
1 TTTTACC
6748122 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:6748602 original size:229 final size:229
Alignment explanation
Indices: 6748170--6749097 Score: 1643
Period size: 229 Copynumber: 4.1 Consensus size: 229
6748160 ACTTTTATAC
* *
6748170 GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTTAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
6748234 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC--AAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
6748297 --A----ATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
6748356 TATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
*
6748390 GTATGGACACTTTTATAAAAATGATATGTACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
6748455 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
6748520 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
6748585 TATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
6748619 GTATGGACAC-TTTATAAAAATG--ATATAC-TTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
6748680 TTTTTAATAGTGTTTCATGTTTTACACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
6748745 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
6748810 GATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
6748844 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
6748909 TTTTTAATAGT-TTTGCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAA
66 TTTTTAATAGTGTTT-CATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
*
6748973 ATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
130 ATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
* *
6749038 AGATAATAATAAATATATTTT-CACAGTAAAATAA
195 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
*
6749072 GTATGGACACTTTTATAAAAAGGATA
1 GTATGGACACTTTTATAAAAATGATA
6749098 GATAATTTAC
Statistics
Matches: 682, Mismatches: 12, Indels: 20
0.96 0.02 0.03
Matches are distributed among these distances:
220 59 0.09
221 61 0.09
223 4 0.01
225 206 0.30
226 17 0.02
228 58 0.09
229 277 0.41
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (229 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
GATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:6748930 original size:454 final size:446
Alignment explanation
Indices: 6748170--6749097 Score: 1619
Period size: 454 Copynumber: 2.1 Consensus size: 446
6748160 ACTTTTATAC
* *
6748170 GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTTAATTT
1 GTATGGACACTTTTATAAAAATG--ATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
6748235 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
64 TTTTAATAGTGTTTCATGTTTTACACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
*
6748300 TATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAATATAATAAT
129 TATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAAT
*
6748365 AAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATGTACTTTTTTTAA
194 AAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAA
6748430 AGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAAT
259 AGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAAT
6748495 TTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAA
324 TTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAA
* * *
6748560 TTTAAATTTAACAATATTAACCAAATATAATAATAAATATGTTTTCCACAGTGAAATAA
389 TTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTT-CACAGTAAAATAA
6748619 GTATGGACAC-TTTATAAAAATGATATAC-TTTTTTAAAGTTATGTAATTTATGTTTCAATTTTT
1 GTATGGACACTTTTATAAAAATGATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTT
6748682 TTTAATAGTGTTTCATGTTTTACACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
65 TTTAATAGTGTTTCATGTTTTACACCTACAATATTAATTTAATAATTTCATTTACAC--AAAA--
6748747 ATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGA
126 A----ATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGA
6748812 TAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACTT
187 TAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACTT
6748877 TTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGT-TTTGCATGTTTTCCACCTACA
252 TTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTT-CATGTTTTCCACCTACA
* *
6748941 ATATTAATTTAATAATTTCATTTACACACAAAATTATTTGATTTTTTGATATTTTATAAAATATT
316 ATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATT
6749006 ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTAAAATA
381 ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTAAAATA
6749071 A
446 A
*
6749072 GTATGGACACTTTTATAAAAAGGATA
1 GTATGGACACTTTTATAAAAATGATA
6749098 GATAATTTAC
Statistics
Matches: 457, Mismatches: 11, Indels: 17
0.94 0.02 0.04
Matches are distributed among these distances:
445 29 0.06
446 66 0.14
448 16 0.04
449 9 0.02
450 1 0.00
453 25 0.05
454 311 0.68
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (446 bp):
GTATGGACACTTTTATAAAAATGATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTT
TTAATAGTGTTTCATGTTTTACACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTA
TTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAA
ATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAG
TTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTT
AATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATT
TAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTAAAATAA
Found at i:6762033 original size:26 final size:26
Alignment explanation
Indices: 6762000--6762067 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
6761990 AGGACTACTA
6762000 TGTCCCGAAGGACCACATATCACATG
1 TGTCCCGAAGGACCACATATCACATG
* *
6762026 TGTCCCGAATGACCACATATCACATT
1 TGTCCCGAAGGACCACATATCACATG
6762052 TGTCCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
6762068 TCCTTAAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (26 bp):
TGTCCCGAAGGACCACATATCACATG
Found at i:6763082 original size:21 final size:21
Alignment explanation
Indices: 6763056--6763096 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6763046 TTTTTTCTTT
6763056 AGGGGGAAATC-GATACCCCCC
1 AGGGGGAAATCTG-TACCCCCC
*
6763077 AGGGGGGAATCTGTACCCCC
1 AGGGGGAAATCTGTACCCCC
6763097 TACGTAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.12
Consensus pattern (21 bp):
AGGGGGAAATCTGTACCCCCC
Found at i:6766656 original size:45 final size:45
Alignment explanation
Indices: 6766605--6766733 Score: 177
Period size: 45 Copynumber: 2.9 Consensus size: 45
6766595 TATATAATTT
* ** * *
6766605 CTGAAGGAAAGCAATTGGATGACACAATAACTGATGAGACTGTTG
1 CTGAAGGAAAGCATTTGGATGGTACAATAACTGATGACACTGTTA
* * *
6766650 CTGAAGGGAAGCATTTGGATGGTACAATAGCTGATGACATTGTTA
1 CTGAAGGAAAGCATTTGGATGGTACAATAACTGATGACACTGTTA
*
6766695 CTGAAGGAAAGCATTTGGATGGTACAAAAACTGATGACA
1 CTGAAGGAAAGCATTTGGATGGTACAATAACTGATGACA
6766734 ATGATATTCT
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.24
Consensus pattern (45 bp):
CTGAAGGAAAGCATTTGGATGGTACAATAACTGATGACACTGTTA
Found at i:6771752 original size:18 final size:18
Alignment explanation
Indices: 6771726--6771763 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6771716 TCTCTCTCCG
6771726 CGTGATCCAACACTTCCT
1 CGTGATCCAACACTTCCT
* *
6771744 CGTGTTCCACCACTTCCT
1 CGTGATCCAACACTTCCT
6771762 CG
1 CG
6771764 AATTGCGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.42, G:0.13, T:0.29
Consensus pattern (18 bp):
CGTGATCCAACACTTCCT
Found at i:6779356 original size:221 final size:217
Alignment explanation
Indices: 6779004--6779416 Score: 668
Period size: 221 Copynumber: 1.9 Consensus size: 217
6778994 TTTGGTCGGG
* *
6779004 TCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTGAAAAATAC
1 TCGGGTCGGTGTTTTTAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTGAAAAAGAC
* *
6779069 CCGACCCGAAAATATATATAATTTTACCTTATATATTTAGGAATAATTACAATAATACCCCTCTA
66 CCGACCCGAAAAAAAATATAATTTTACCTTATATATTTAGGAATAATTACAATAATACCCCTCTA
* *
6779134 TATATAATTTTTTTCAATTAAGTCACTGTTTTTATTGAATAAAAATA-ATTTTTTATTATTTCGG
131 TATATAATTTTTTCCAATTAAGTCAATGTTTTTATTGAATAAAAATATATTTTTTATTATTTCGG
6779198 GTCGGATTTCTAATTCATATAT
196 GTCGGATTTCTAATTCATATAT
* * *
6779220 TCGGGTC-GTGTTTTTAAGTGTGATATTCGGGTCGGTTTGGGTTCGGGTTTAGGGTGAAAAAAAC
1 TCGGGTCGGTGTTTTTAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTG--AAAAA-
6779284 CGGACCCGACCCGAAAAAAAAATATAATTTTACCTTATATATTTAGGAATAATTACAATAATACC
63 --GACCCGACCCG-AAAAAAAATATAATTTTACCTTATATATTTAGGAATAATTACAATAATACC
*
6779349 CCTCTATATATAATTTTTTCCAATTAAGTCAATGTTTTTATTGAATAAAAATATTTTTTTTATTA
125 CCTCTATATATAATTTTTTCCAATTAAGTCAATGTTTTTATTGAATAAAAATATATTTTTTATTA
6779414 TTT
190 TTT
6779417 TGTGTCTTGT
Statistics
Matches: 180, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
215 45 0.25
216 7 0.04
217 5 0.03
220 10 0.06
221 100 0.56
222 13 0.07
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.40
Consensus pattern (217 bp):
TCGGGTCGGTGTTTTTAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTGAAAAAGAC
CCGACCCGAAAAAAAATATAATTTTACCTTATATATTTAGGAATAATTACAATAATACCCCTCTA
TATATAATTTTTTCCAATTAAGTCAATGTTTTTATTGAATAAAAATATATTTTTTATTATTTCGG
GTCGGATTTCTAATTCATATAT
Found at i:6779869 original size:17 final size:17
Alignment explanation
Indices: 6779847--6779904 Score: 98
Period size: 17 Copynumber: 3.4 Consensus size: 17
6779837 AATTATATTT
*
6779847 CAATTCCTAACAAATTC
1 CAATTCCTAACAGATTC
*
6779864 CAATTCCTGACAGATTC
1 CAATTCCTAACAGATTC
6779881 CAATTCCTAACAGATTC
1 CAATTCCTAACAGATTC
6779898 CAATTCC
1 CAATTCC
6779905 CTCATAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.34, C:0.31, G:0.05, T:0.29
Consensus pattern (17 bp):
CAATTCCTAACAGATTC
Found at i:6780527 original size:17 final size:18
Alignment explanation
Indices: 6780491--6780531 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6780481 ATATTATGTA
*
6780491 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
6780509 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
6780526 TTTACT
1 TTTACT
6780532 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:6782884 original size:35 final size:33
Alignment explanation
Indices: 6782844--6782928 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
6782834 GTATTTCAGT
6782844 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAAT-TC--TTATTG
*
6782879 TAATTTGGTTATCATTTACCATTTAATTCTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATTCTTATTG
* *
6782914 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
6782929 TAAAATTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 3 0.07
38 12 0.28
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATTCTTATTG
Found at i:6786553 original size:20 final size:21
Alignment explanation
Indices: 6786501--6786561 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
6786491 TTCCCCTGTG
6786501 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
6786524 GGGGGAATCGGTTCCCTC-AT
1 GGGGGAATCGGTTCCCTCAAA
* *
6786544 GGGGGTATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
6786562 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:6790381 original size:22 final size:21
Alignment explanation
Indices: 6790339--6790378 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6790329 GAGTTTATTT
*
6790339 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
6790360 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
6790379 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:6792239 original size:19 final size:19
Alignment explanation
Indices: 6792215--6792251 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6792205 TTGGAGCGTG
*
6792215 GGGGAATCGGTACCCTAAT
1 GGGGAATCAGTACCCTAAT
*
6792234 GGGGAATCAGTTCCCTAA
1 GGGGAATCAGTACCCTAA
6792252 GTATAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (19 bp):
GGGGAATCAGTACCCTAAT
Found at i:6803087 original size:63 final size:65
Alignment explanation
Indices: 6803009--6803136 Score: 242
Period size: 63 Copynumber: 2.0 Consensus size: 65
6802999 TAGGATTCAT
6803009 TAAACTCAAATATAACAAAGTAATACAAA-TAATCTCCCTCAAGAGATATAAC-AAGTAATACAA
1 TAAACTCAAATATAACAAAGTAATACAAACTAATCTCCCTCAAGAGATATAACAAAGTAATACAA
6803072 TAAACTCAAATATAACAAAGTAATACAAACTAATCTCCCTCAAGAGATATAACAAAGTAATACAA
1 TAAACTCAAATATAACAAAGTAATACAAACTAATCTCCCTCAAGAGATATAACAAAGTAATACAA
6803137 ACGAATCTAT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
63 29 0.46
64 23 0.37
65 11 0.17
ACGTcount: A:0.54, C:0.18, G:0.06, T:0.22
Consensus pattern (65 bp):
TAAACTCAAATATAACAAAGTAATACAAACTAATCTCCCTCAAGAGATATAACAAAGTAATACAA
Found at i:6804342 original size:19 final size:19
Alignment explanation
Indices: 6804318--6804369 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
6804308 GTGGACCCTT
*
6804318 AGTGCATCGGTGCACTAAG
1 AGTGCATCGATGCACTAAG
6804337 AGTGCATCGATGCACTAAG
1 AGTGCATCGATGCACTAAG
*
6804356 AGTGCACCGATGCA
1 AGTGCATCGATGCA
6804370 TCAAGTGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (19 bp):
AGTGCATCGATGCACTAAG
Found at i:6805072 original size:2 final size:2
Alignment explanation
Indices: 6805065--6805105 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
6805055 ATCAAACCAA
6805065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6805106 ATAAGTTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6805531 original size:21 final size:21
Alignment explanation
Indices: 6805507--6805550 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6805497 CCGGTGCAGG
*
6805507 AGGAGGAGCACGAGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
* *
6805528 AGGAGCAGCTCGTGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
6805549 AG
1 AG
6805551 CTCCCGGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.41, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAGCT
Found at i:6806512 original size:64 final size:64
Alignment explanation
Indices: 6806428--6806612 Score: 212
Period size: 64 Copynumber: 2.9 Consensus size: 64
6806418 TTGTTTGAAT
* ** * * * *
6806428 GTGCACCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTATAATAAAGACATTGAATGCAATTC
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAA-ACATCGAATGCAA-TC
6806492 -
64 G
* *
6806492 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATGCAATCG
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCG
* * ** *
6806556 GTGCATCGATGCATAAGGAGTGCATCGATGCATCTCAGCAATAATACAACATCGAAT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAAT
6806613 ACATTTTATG
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
63 2 0.02
64 91 0.88
65 10 0.10
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (64 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCG
Found at i:6807328 original size:31 final size:31
Alignment explanation
Indices: 6807290--6807369 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
6807280 AGGGTCGAGG
6807290 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
6807321 GTTTACCTATGTTCTTCGGGACATATTGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
6807352 GTTTACCTAGGTTCTTCG
1 GTTTACCTATGTTCTTCG
6807370 AGATCTATGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.41
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:6810040 original size:63 final size:64
Alignment explanation
Indices: 6809968--6810088 Score: 158
Period size: 64 Copynumber: 1.9 Consensus size: 64
6809958 CGATGCATTG
* *
6809968 GTAGTGCATCGATGCA-CTC-TTTATAATAAAGACATCGAATGCAATTC-GTGCATCGATACATA
1 GTAGTGCATCGATGCATCCCATTAATAATAAA-ACATCGAATGCAA-TCGGTGCATCGATACATA
6810030 A
64 A
* * *
6810031 GTAGTGCATCGATTCATCCCATTAATAGTGAAACATCGAATGCAATCGGTGCATCGAT
1 GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCGGTGCATCGAT
6810089 GCATCTCAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
63 17 0.34
64 25 0.50
65 8 0.16
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (64 bp):
GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCGGTGCATCGATACATAA
Found at i:6810944 original size:31 final size:30
Alignment explanation
Indices: 6810796--6810937 Score: 234
Period size: 30 Copynumber: 4.7 Consensus size: 30
6810786 AGGGTCGAGG
6810796 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTA-GTTCTTCGGGACATATGGACT
6810827 GTTTACCTATGTTCTTCGGGACAT-TGGACT
1 GTTTACCTA-GTTCTTCGGGACATATGGACT
6810857 GTTTACCTAGTTCTTCGGGACATATGGACT
1 GTTTACCTAGTTCTTCGGGACATATGGACT
6810887 GTTTTACCTA-TTCTTCGGGACATATGGACT
1 G-TTTACCTAGTTCTTCGGGACATATGGACT
6810917 GTTTACCTAGGTTCTTCGGGA
1 GTTTACCTA-GTTCTTCGGGA
6810938 TCTATGGCCT
Statistics
Matches: 107, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
29 22 0.21
30 43 0.40
31 42 0.39
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (30 bp):
GTTTACCTAGTTCTTCGGGACATATGGACT
Found at i:6811259 original size:31 final size:29
Alignment explanation
Indices: 6811153--6811252 Score: 166
Period size: 28 Copynumber: 3.4 Consensus size: 29
6811143 GTAAGTGGTT
6811153 TGTTCTTCGGGACATGGACTGTTTACCTA
1 TGTTCTTCGGGACATGGACTGTTTACCTA
6811182 TGTTCTTCGGGACAT-GACTGTTTACCTA
1 TGTTCTTCGGGACATGGACTGTTTACCTA
6811210 TGTTCTTCGGGACATATGGACTGTTTACCTA
1 TGTTCTTCGGGAC--ATGGACTGTTTACCTA
*
6811241 GGTTCTTCGGGA
1 TGTTCTTCGGGA
6811253 TCTATGGCCT
Statistics
Matches: 67, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
28 26 0.39
29 15 0.22
30 2 0.03
31 24 0.36
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (29 bp):
TGTTCTTCGGGACATGGACTGTTTACCTA
Found at i:6819205 original size:64 final size:63
Alignment explanation
Indices: 6819133--6819275 Score: 148
Period size: 64 Copynumber: 2.2 Consensus size: 63
6819123 TTAGACCCTT
* *
6819133 AGTGCATCGGTGCA-CTAAGAGTGCATCGATGCAACAAGTGCATTCGATG-TTTCA-AAATAGCC
1 AGTGCATCGGTGCAGCT--G-GTGCATCGATGCAACAAATGCATTCCATGTTTTCATAAA-AGCC
*
6819195 TG
62 TC
* * *
6819197 AGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCCATGTTTTCATAAAATCCTC
1 AGTGCATCGGTGCA--GCTGGTGCATCGATGCAACAAATGCATTCCATGTTTTCATAAAAGCCTC
*
6819262 AGTGCATCTGTGCA
1 AGTGCATCGGTGCA
6819276 TGGTATGTGC
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
64 39 0.59
65 22 0.33
66 3 0.05
67 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (63 bp):
AGTGCATCGGTGCAGCTGGTGCATCGATGCAACAAATGCATTCCATGTTTTCATAAAAGCCTC
Found at i:6819286 original size:65 final size:64
Alignment explanation
Indices: 6819153--6819295 Score: 166
Period size: 65 Copynumber: 2.2 Consensus size: 64
6819143 TGCACTAAGA
* * * *
6819153 GTGCATCGATGCAACAAGTGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCCATGTTTCAAAATAGCCTCAGTGCATCGATGCATGGCTG
*
6819217 GTGCATCGATGCATCAAATGCATTCCATGTTTTCATAAA-ATCCTCAGTGCATCTG-TGCATGG-
1 GTGCATCGATGCATCAAATGCATTCCATG-TTTCA-AAATAGCCTCAGTGCATC-GATGCATGGC
*
6819279 TAT
63 T-G
*
6819282 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
6819296 GGTATGTGCA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
64 27 0.40
65 37 0.54
66 4 0.06
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCCATGTTTCAAAATAGCCTCAGTGCATCGATGCATGGCTG
Found at i:6819287 original size:19 final size:19
Alignment explanation
Indices: 6819263--6819315 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
6819253 AAAATCCTCA
*
6819263 GTGCATCTGTGCATGGTAT
1 GTGCATCGGTGCATGGTAT
6819282 GTGCATCGGTGCATGGTAT
1 GTGCATCGGTGCATGGTAT
*
6819301 GTGCATCGATGCATG
1 GTGCATCGGTGCATG
6819316 AAATGCATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.32
Consensus pattern (19 bp):
GTGCATCGGTGCATGGTAT
Found at i:6826829 original size:22 final size:21
Alignment explanation
Indices: 6826787--6826826 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6826777 GAGTTTGTTT
*
6826787 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
6826808 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
6826827 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:6830039 original size:31 final size:31
Alignment explanation
Indices: 6830001--6830065 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
6829991 CAGTTACGTT
* *
6830001 GGGACCATATTGCAAACAAAGTAAATGTTAG
1 GGGACCATATTACAAACAAACTAAATGTTAG
* *
6830032 GGGACCATATTACAAACAGACTAAATGTTGG
1 GGGACCATATTACAAACAAACTAAATGTTAG
6830063 GGG
1 GGG
6830066 GGACTATGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (31 bp):
GGGACCATATTACAAACAAACTAAATGTTAG
Found at i:6831162 original size:30 final size:31
Alignment explanation
Indices: 6831093--6831159 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
6831083 TGCAATACAA
* *
6831093 TCCCCCAACATTTAATTCGTTTGTAATATGG
1 TCCCCCAACATTTAATTCATTTGCAATATGG
**
6831124 TCCCCCAACATTTCGTTCATTTGCAATATGG
1 TCCCCCAACATTTAATTCATTTGCAATATGG
6831155 TCCCC
1 TCCCC
6831160 AACGTAGCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (31 bp):
TCCCCCAACATTTAATTCATTTGCAATATGG
Found at i:6835567 original size:18 final size:19
Alignment explanation
Indices: 6835532--6835573 Score: 68
Period size: 18 Copynumber: 2.2 Consensus size: 19
6835522 TGTTAGGAAT
6835532 TTAATTAAAATTTTGAAAAA
1 TTAATTAAAA-TTTGAAAAA
6835552 TTAATTAAAA-TTGAAAAA
1 TTAATTAAAATTTGAAAAA
6835570 TTAA
1 TTAA
6835574 ACTATTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.55
20 10 0.45
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
TTAATTAAAATTTGAAAAA
Found at i:6837040 original size:16 final size:13
Alignment explanation
Indices: 6837010--6837035 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6837000 TTATATATGA
6837010 TATTATTATATTT
1 TATTATTATATTT
6837023 TATTATTATATTT
1 TATTATTATATTT
6837036 ATTTAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTATTATATTT
Found at i:6840502 original size:20 final size:21
Alignment explanation
Indices: 6840473--6840523 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
6840463 AATTTTAATA
*
6840473 GTTATAAAATGATTATTAAAT
1 GTTATAAAATGATTATCAAAT
* *
6840494 -TTATTAAATTATTATCAAAT
1 GTTATAAAATGATTATCAAAT
6840514 GTTATAAAAT
1 GTTATAAAAT
6840524 AATAATAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (21 bp):
GTTATAAAATGATTATCAAAT
Found at i:6840533 original size:20 final size:20
Alignment explanation
Indices: 6840473--6840544 Score: 56
Period size: 21 Copynumber: 3.5 Consensus size: 20
6840463 AATTTTAATA
* *
6840473 GTTATAAAATGATTATTAAAT
1 GTTATAAAAT-AATAATAAAT
* * *
6840494 -TTATTAAATTATTATCAAAT
1 GTTATAAAATAATAAT-AAAT
6840514 GTTATAAAATAATAATAAAT
1 GTTATAAAATAATAATAAAT
*
6840534 TTTAATAAAAT
1 GTT-ATAAAAT
6840545 TAAGGAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
19 2 0.05
20 18 0.46
21 19 0.49
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (20 bp):
GTTATAAAATAATAATAAAT
Found at i:6844063 original size:181 final size:182
Alignment explanation
Indices: 6843829--6844211 Score: 632
Period size: 183 Copynumber: 2.1 Consensus size: 182
6843819 AATTCTAATT
* * * *
6843829 TATATAA-AAATTAAATATTTTTTAATTCAAAAAAGTTTATAATTAATTTAAAT-A-ATAT-ATT
1 TATATAATATATTTAATATTTTTTAATTAAAAAAAGTTTACAATTAATTTAAATAATATATAATT
*
6843890 ATAAAATAAAAATTTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTG
66 ATAAAATAAAAAATTTAGAT-AATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTG
* *
6843955 GATTTTAAATTATTAATTGAGTTTTAAATGGTTTGGGCTT-AGCCCATATGTTA
130 GATCTTAAATTATTAATTGAGTTTTAAATGATTTGGG-TTGAGCCCATATGTTA
6844008 TATATAATATATTTAATATTTTTTAATTAAAAAACAGTTTACAATTAATTTAAATAATATATAAT
1 TATATAATATATTTAATATTTTTTAATTAAAAAA-AGTTTACAATTAATTTAAATAATATATAAT
*
6844073 TATAAAATAAAAAATTTATATAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTG
65 TATAAAATAAAAAATTTAGATAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTG
6844138 GATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCCATATGTTA
130 GATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCCATATGTTA
6844191 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
6844212 AAAATTTAAT
Statistics
Matches: 190, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
179 7 0.04
180 23 0.12
181 19 0.10
182 3 0.02
183 117 0.62
184 21 0.11
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (182 bp):
TATATAATATATTTAATATTTTTTAATTAAAAAAAGTTTACAATTAATTTAAATAATATATAATT
ATAAAATAAAAAATTTAGATAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTGG
ATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCCATATGTTA
Found at i:6844426 original size:5 final size:5
Alignment explanation
Indices: 6844402--6844455 Score: 65
Period size: 5 Copynumber: 11.0 Consensus size: 5
6844392 TACCTGCAAC
* * * *
6844402 AAAAT AAAA- AAGAT ATAAT AAAAT AAAAT TATAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
6844451 AAAAT
1 AAAAT
6844456 TATATAAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
4 3 0.08
5 37 0.93
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:6844439 original size:15 final size:15
Alignment explanation
Indices: 6844419--6844464 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
6844409 AAAAGATATA
6844419 ATAAAATAAAATTAT
1 ATAAAATAAAATTAT
6844434 ATAAAAT--AA--A-
1 ATAAAATAAAATTAT
6844444 ATAAAATAAAATTAT
1 ATAAAATAAAATTAT
6844459 ATAAAA
1 ATAAAA
6844465 AATAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
10 7 0.27
11 1 0.04
12 2 0.08
13 2 0.08
14 1 0.04
15 13 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAAATAAAATTAT
Found at i:6845686 original size:125 final size:125
Alignment explanation
Indices: 6845427--6846050 Score: 1164
Period size: 125 Copynumber: 5.0 Consensus size: 125
6845417 TTGAATTTCC
* *
6845427 CTCGTTTTGGGATTATGTTTGTTGGCTCGGATGTTTGTGAGGTGCGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
6845492 -T-TGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
6845550 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
6845615 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
*
6845675 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTATGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
6845740 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTA-TCTTTTTCCTTCATTTAGGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
6845799 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
*
6845864 TTGTGTGTCCAAATGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
6845924 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
* * *
6845989 TTGTGTGTCCAAGTGTAAACTTGACAATGGCATGATGTATTCTTTTTCCTCCATTTAAGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
6846049 CT
1 CT
6846051 AGGGAGATTT
Statistics
Matches: 489, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
123 63 0.13
124 123 0.25
125 303 0.62
ACGTcount: A:0.17, C:0.12, G:0.26, T:0.45
Consensus pattern (125 bp):
CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
Found at i:6845864 original size:249 final size:250
Alignment explanation
Indices: 6845427--6846050 Score: 1164
Period size: 249 Copynumber: 2.5 Consensus size: 250
6845417 TTGAATTTCC
* *
6845427 CTCGTTTTGGGATTATGTTTGTTGGCTCGGATGTTTGTGAGGTGCGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
6845492 -T-TGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGTCTCGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGTCTCGT
6845555 TTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGATTGTG
131 TTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGATTGTG
*
6845620 TGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
196 TGTCCAAATGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
*
6845675 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTATGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
6845740 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTA-TCTTTTTCCTTCATTTAGGTCTCGT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGTCTCGT
6845804 TTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGATTGTG
131 TTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGATTGTG
6845869 TGTCCAAATGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
196 TGTCCAAATGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
6845924 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
1 CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
* * *
6845989 TTGTGTGTCCAAGTGTAAACTTGACAATGGCATGATGTATTCTTTTTCCTCCATTTAAGTCT
66 TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGTCT
6846051 AGGGAGATTT
Statistics
Matches: 365, Mismatches: 8, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
248 62 0.17
249 247 0.68
250 56 0.15
ACGTcount: A:0.17, C:0.12, G:0.26, T:0.45
Consensus pattern (250 bp):
CTCGTTTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGA
TTGTGTGTCCAAGTGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGTCTCGT
TTTGGGATTGTGTTTGTTGGCTCGGATGTTTGTGAGGTGTGGTTAAGTTCTGATTTTTGATTGTG
TGTCCAAATGTAAACTTGACAATGGCAAGATGTATTCTTTTTCCTTCATTTAGGT
Found at i:6856147 original size:29 final size:29
Alignment explanation
Indices: 6856071--6856150 Score: 142
Period size: 29 Copynumber: 2.8 Consensus size: 29
6856061 ATTCTACAGT
*
6856071 GACCAAAGAGGTCGCCATACACGCCCAAC
1 GACCAAAGAGGTCGCCATGCACGCCCAAC
6856100 GACCAAAGAGGTCGCCATGCACGCCCAAC
1 GACCAAAGAGGTCGCCATGCACGCCCAAC
*
6856129 GACCAAGGAGGTCGCCATGCAC
1 GACCAAAGAGGTCGCCATGCAC
6856151 TCGGGGCGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.25, T:0.07
Consensus pattern (29 bp):
GACCAAAGAGGTCGCCATGCACGCCCAAC
Found at i:6856557 original size:21 final size:21
Alignment explanation
Indices: 6856499--6856590 Score: 103
Period size: 21 Copynumber: 4.3 Consensus size: 21
6856489 CTATCACTCA
*
6856499 TGCATGCGTTGCATCCATAGC
1 TGCATGCGTTGCATCCGTAGC
* * **
6856520 TGGAAGATTCCTGCATCCGTAGC
1 TGCATGCGT--TGCATCCGTAGC
*
6856543 TACATGCGTTGCATCCGTAGC
1 TGCATGCGTTGCATCCGTAGC
*
6856564 TGCATGCGTTGCATCCATAGC
1 TGCATGCGTTGCATCCGTAGC
6856585 TGCATG
1 TGCATG
6856591 ATTGCAGCTT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
21 42 0.74
23 15 0.26
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (21 bp):
TGCATGCGTTGCATCCGTAGC
Found at i:6856986 original size:21 final size:21
Alignment explanation
Indices: 6856961--6857000 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6856951 TAGTTAATTA
6856961 GTTTGTTAGTATAAATTATTT
1 GTTTGTTAGTATAAATTATTT
* *
6856982 GTTTGTTAGTTTAAGTTAT
1 GTTTGTTAGTATAAATTAT
6857001 ATATTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.57
Consensus pattern (21 bp):
GTTTGTTAGTATAAATTATTT
Found at i:6857508 original size:17 final size:17
Alignment explanation
Indices: 6857486--6857543 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
6857476 ATAATTCCTG
6857486 TTAAAAAAATATTGTGT
1 TTAAAAAAATATTGTGT
* *
6857503 TTAAAAATATTTAGTGTTGTT
1 TTAAAAA-A-ATATTG-TG-T
6857524 TTAAAAAAATATT-TGT
1 TTAAAAAAATATTGTGT
6857540 TTAA
1 TTAA
6857544 TTTATATTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
16 5 0.15
17 9 0.27
18 1 0.03
19 7 0.21
20 3 0.09
21 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (17 bp):
TTAAAAAAATATTGTGT
Found at i:6857547 original size:21 final size:23
Alignment explanation
Indices: 6857505--6857547 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
6857495 TATTGTGTTT
**
6857505 AAAAATATTTAGTGTTGTTTTAA
1 AAAAATATTTAGTGTTAATTTAA
6857528 AAAAATATTT-GT-TTAATTTA
1 AAAAATATTTAGTGTTAATTTA
6857548 TATTGTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
AAAAATATTTAGTGTTAATTTAA
Found at i:6857756 original size:16 final size:15
Alignment explanation
Indices: 6857717--6857759 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
6857707 ATCAAATCTA
*
6857717 AATCATTAAATATTAT
1 AATCA-TAATTATTAT
*
6857733 AATAATAATTATTAGT
1 AATCATAATTATTA-T
6857749 AATCATAATTA
1 AATCATAATTA
6857760 AATCATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (15 bp):
AATCATAATTATTAT
Found at i:6857770 original size:26 final size:26
Alignment explanation
Indices: 6857740--6857831 Score: 66
Period size: 31 Copynumber: 3.5 Consensus size: 26
6857730 TATAATAATA
6857740 ATTATTAGTAATCATAATTAAATCAT
1 ATTATTAGTAATCATAATTAAATCAT
*
6857766 ATTATTATTAAATCATTAAATATCAAATCAT
1 ATTATTAGT-AATCA-T-AAT-T-AAATCAT
* * *
6857797 -TAGATTAATAATAAT-ATTAAATC--
1 AT-TATTAGTAATCATAATTAAATCAT
6857820 ATTATTAGTAAT
1 ATTATTAGTAAT
6857832 ATTAGTAATC
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
23 8 0.15
24 1 0.02
25 5 0.09
26 9 0.17
27 7 0.13
28 1 0.02
29 4 0.08
30 6 0.11
31 12 0.23
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (26 bp):
ATTATTAGTAATCATAATTAAATCAT
Found at i:6859258 original size:23 final size:21
Alignment explanation
Indices: 6859227--6859279 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
6859217 GATTTGATAC
* *
6859227 TAATGATTTACTATTATTATT
1 TAATTATTTACTATTAATATT
*
6859248 AATAATTATTTATTATTAATATT
1 --TAATTATTTACTATTAATATT
6859271 TAATTATTT
1 TAATTATTT
6859280 GATACTAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 9 0.33
23 18 0.67
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TAATTATTTACTATTAATATT
Found at i:6859262 original size:17 final size:17
Alignment explanation
Indices: 6859239--6859278 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6859229 ATGATTTACT
6859239 ATTATTATTAATAATTA
1 ATTATTATTAATAATTA
* *
6859256 TTTATTATTAATATTTA
1 ATTATTATTAATAATTA
6859273 ATTATT
1 ATTATT
6859279 TGATACTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTATTATTAATAATTA
Found at i:6859288 original size:21 final size:22
Alignment explanation
Indices: 6859250--6859333 Score: 77
Period size: 21 Copynumber: 3.9 Consensus size: 22
6859240 TTATTATTAA
*
6859250 TAATTATTT-ATTATTAATATT
1 TAATTATTTGATTACTAATATT
6859271 TAATTATTTGA-TACTAATGATT
1 TAATTATTTGATTACTAAT-ATT
* * *
6859293 TAAAATAGTCGAATTACT-ATATT
1 T-AATTATTTG-ATTACTAATATT
6859316 TAATTATTTGA-TACTAAT
1 TAATTATTTGATTACTAAT
6859334 GATACCAGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
20 4 0.08
21 18 0.36
22 11 0.22
23 10 0.20
24 3 0.06
25 4 0.08
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (22 bp):
TAATTATTTGATTACTAATATT
Found at i:6861655 original size:21 final size:21
Alignment explanation
Indices: 6861631--6861670 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
6861621 TTTATATATG
6861631 ATATAACTTAAACTAACAATA
1 ATATAACTTAAACTAACAATA
6861652 ATATAACTTAAACTAACAA
1 ATATAACTTAAACTAACAA
6861671 ACTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
ATATAACTTAAACTAACAATA
Found at i:6861804 original size:29 final size:27
Alignment explanation
Indices: 6861755--6861812 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
6861745 TTTAAATAAT
6861755 TATTCTTTTATATAACTAAACTAATAAAC
1 TATTCTTTTATATAACTAAACT--TAAAC
6861784 TATT-TTTTATTATAA-TAAAACTTAAAC
1 TATTCTTTTA-TATAACT-AAACTTAAAC
6861811 TA
1 TA
6861813 CTAATAAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
27 7 0.26
28 6 0.22
29 14 0.52
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (27 bp):
TATTCTTTTATATAACTAAACTTAAAC
Found at i:6861898 original size:27 final size:29
Alignment explanation
Indices: 6861863--6861927 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
6861853 AAAATATAAC
*
6861863 TTAACTATTTA-ACTAACT-ACAAACTAA
1 TTAAATATTTAGACTAACTAACAAACTAA
*
6861890 TTAAATA-TTAGACTAACTAACACACTAA
1 TTAAATATTTAGACTAACTAACAAACTAA
*
6861918 TTAATTATTT
1 TTAAATATTT
6861928 TTTTAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 13 0.41
28 14 0.44
29 2 0.06
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (29 bp):
TTAAATATTTAGACTAACTAACAAACTAA
Found at i:6862370 original size:29 final size:28
Alignment explanation
Indices: 6862338--6862421 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 28
6862328 GAAGGCATAG
*
6862338 GTCGTTGGGATCCCTTGGCGACCTACAAT
1 GTCGATGGGATCCC-TGGCGACCTACAAT
6862367 GTCGATGGGATGCCCTGGCGACCTACAAT
1 GTCGATGGGAT-CCCTGGCGACCTACAAT
* *
6862396 GTCGCTGGGATTCCCTGGCAACCTAC
1 GTCGATGGGA-TCCCTGGCGACCTAC
6862422 CCACGTTGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.24
Consensus pattern (28 bp):
GTCGATGGGATCCCTGGCGACCTACAAT
Found at i:6862536 original size:29 final size:29
Alignment explanation
Indices: 6862502--6862590 Score: 160
Period size: 29 Copynumber: 3.1 Consensus size: 29
6862492 CATGCAGAGA
6862502 CTCCAAGCTCGCCCGGATGCCATGGCGAC
1 CTCCAAGCTCGCCCGGATGCCATGGCGAC
* *
6862531 CTCCAAGCTCGCCTGGATGCCATGACGAC
1 CTCCAAGCTCGCCCGGATGCCATGGCGAC
6862560 CTCCAAGCTCGCCCGGATGCCATGGCGAC
1 CTCCAAGCTCGCCCGGATGCCATGGCGAC
6862589 CT
1 CT
6862591 ACGGTAACAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.18, C:0.40, G:0.26, T:0.16
Consensus pattern (29 bp):
CTCCAAGCTCGCCCGGATGCCATGGCGAC
Found at i:6864891 original size:21 final size:22
Alignment explanation
Indices: 6864859--6864902 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
6864849 ACTAGGGGCG
*
6864859 CGTAGAATGTCCCGAAGGACCA
1 CGTAGAATGTCCCAAAGGACCA
6864881 CGTAG-ATGTCCCAAAGGACCA
1 CGTAGAATGTCCCAAAGGACCA
6864902 C
1 C
6864903 ATATAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.32, C:0.30, G:0.25, T:0.14
Consensus pattern (22 bp):
CGTAGAATGTCCCAAAGGACCA
Found at i:6865759 original size:24 final size:20
Alignment explanation
Indices: 6865710--6865767 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
6865700 TTCTCATTGA
*
6865710 AGTGCATCGGTGCATTCTAC
1 AGTGCATCGATGCATTCTAC
6865730 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
6865753 AGGTGCATCGATGCA
1 A-GTGCATCGATGCA
6865768 CTACCATGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:6870434 original size:169 final size:167
Alignment explanation
Indices: 6870127--6870464 Score: 585
Period size: 169 Copynumber: 2.0 Consensus size: 167
6870117 CAAGAAGGTT
6870127 CCTCTAAAACTTAAGGGAAAATTTTATAGAATGGCAATAAGACAAGCGCTGTTGTATGGATCAGA
1 CCTCTAAAACTTAAGGGAAAATTTTATAGAATGGCAATAAGACAAGCGCTGTTGTATGGATCAGA
6870192 ATGTTGGCAACCAAGATCATGTAAGAGGATAGATAGGCCGCAGAAATGAGAATGCTTCGATGGAC
66 ATGTTGGCAACCAAGATCATGTAAGAGGATAGA-AGGCCGCAGAAATGAGAATGCTTCGATGGAC
6870257 ATGCGGTATGACTCTGTGGGATATGACAACAAACTCTG
130 ATGCGGTATGACTCTGTGGGATATGACAACAAACTCTG
6870295 CCTCTAAAACTTAAGGGAAAATTTTATAGAATGGCAAT-A-ACAAGCG-TGTTGTATGGATCAGA
1 CCTCTAAAACTTAAGGGAAAATTTTATAGAATGGCAATAAGACAAGCGCTGTTGTATGGATCAGA
6870357 ATGTTGGGCAACCAAGAAGGATCATGTAAGGAGGATAG-AGGCCGCAGAAATGAGAATGCTTCGA
66 ATGTT-GGCAACC---AA-GATCATGTAA-GAGGATAGAAGGCCGCAGAAATGAGAATGCTTCGA
6870421 TGGACATGCGGTATGACTCTGTGGGATATGACAACAAACTCTG
125 TGGACATGCGGTATGACTCTGTGGGATATGACAACAAACTCTG
6870464 C
1 C
6870465 TATTAGGATG
Statistics
Matches: 164, Mismatches: 0, Indels: 11
0.94 0.00 0.06
Matches are distributed among these distances:
165 21 0.13
166 14 0.09
167 1 0.01
168 38 0.23
169 72 0.44
170 10 0.06
171 8 0.05
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.23
Consensus pattern (167 bp):
CCTCTAAAACTTAAGGGAAAATTTTATAGAATGGCAATAAGACAAGCGCTGTTGTATGGATCAGA
ATGTTGGCAACCAAGATCATGTAAGAGGATAGAAGGCCGCAGAAATGAGAATGCTTCGATGGACA
TGCGGTATGACTCTGTGGGATATGACAACAAACTCTG
Found at i:6870949 original size:17 final size:16
Alignment explanation
Indices: 6870927--6870958 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
6870917 TATACAGAGA
6870927 TTTTTTCGCAGGGATTT
1 TTTTTTC-CAGGGATTT
6870944 TTTTTTCCAGGGATT
1 TTTTTTCCAGGGATT
6870959 ACTGCCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.53
Consensus pattern (16 bp):
TTTTTTCCAGGGATTT
Found at i:6875916 original size:2 final size:2
Alignment explanation
Indices: 6875909--6875940 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6875899 GTGCTCATAA
6875909 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6875941 TTAGTGCTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6881714 original size:36 final size:36
Alignment explanation
Indices: 6881658--6881779 Score: 151
Period size: 38 Copynumber: 3.4 Consensus size: 36
6881648 TTTTTTAAAA
*
6881658 AAAACA-TTTTGAAAATATATAATATATAGTTTTTG
1 AAAACATTTTTGAAAAAATATAATATATAGTTTTTG
6881693 AAAACATTTTTGAAAAAATATATATTATATAGTTTTTG
1 AAAACATTTTTGAAAAAATATA-A-TATATAGTTTTTG
* * * * *
6881731 AAATCATTTTTGAAAACATATAACATATA--ATTTC
1 AAAACATTTTTGAAAAAATATAATATATAGTTTTTG
6881765 AAAACATTTTTGAAA
1 AAAACATTTTTGAAA
6881780 CTATGAGTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
34 17 0.22
35 6 0.08
36 19 0.25
37 2 0.03
38 33 0.43
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.41
Consensus pattern (36 bp):
AAAACATTTTTGAAAAAATATAATATATAGTTTTTG
Found at i:6881936 original size:15 final size:14
Alignment explanation
Indices: 6881876--6881943 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
6881866 TGAAAAATAT
*
6881876 TTTTTATTATTATAA
1 TTTTTATTATT-TTA
* *
6881891 TTGTCATT-TTTTA
1 TTTTTATTATTTTA
6881904 TTTTAGTATTATTATTA
1 TTTT--TATTATT-TTA
6881921 TTTTTATTAATTTTA
1 TTTTTATT-ATTTTA
6881936 TTTTTATT
1 TTTTTATT
6881944 GTTCATGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
13 5 0.12
14 2 0.05
15 24 0.56
16 5 0.12
17 7 0.16
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTTATTATTTTA
Found at i:6882288 original size:84 final size:84
Alignment explanation
Indices: 6881977--6882536 Score: 652
Period size: 84 Copynumber: 6.7 Consensus size: 84
6881967 GCAAAGGGTC
* * * *
6881977 CACTCAGCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAGAAGGGCTATCTG-C--C-AA
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAA
**
6882038 AGACCCCCGAGTTCGATTA
66 AGACCTTCGAGTTCGATTA
* * * *
6882057 CACTCAGCTTCGATGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGTTATCTGCCAACCA
1 CACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
6882122 AAGACCTTCGAGTTCGATTA
65 AAGACCTTCGAGTTCGATTA
* * * * *
6882142 CACTCAGCTTCGAGGGCACATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAA
1 CACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
* *
6882207 AATACCTTTGAGTTCGATTA
65 AAGACCTTCGAGTTCGATTA
* *
6882227 CACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAACAAA
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAA
*
6882292 AGACCTTCGAGTTCGACTA
66 AGACCTTCGAGTTCGATTA
* * * *
6882311 CGCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-C--C-AA
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAA
* *
6882372 AGATCC-CCAAGTTCGATTA
66 AGA-CCTTCGAGTTCGATTA
* * * * * * ** *
6882391 CACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
1 CACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
*
6882456 AAGACCTTCGAGTTCGACTA
65 AAGACCTTCGAGTTCGATTA
* * * * *
6882476 CGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAGAAGGGCTATATGCCAA
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
6882537 AGACTCCCGA
Statistics
Matches: 408, Mismatches: 60, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
80 30 0.07
81 85 0.21
82 1 0.00
83 1 0.00
84 163 0.40
85 128 0.31
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (84 bp):
CACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAA
AGACCTTCGAGTTCGATTA
Found at i:6882416 original size:249 final size:247
Alignment explanation
Indices: 6881977--6882561 Score: 762
Period size: 249 Copynumber: 2.3 Consensus size: 247
6881967 GCAAAGGGTC
* * *
6881977 CACTCAGCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGAC
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTCCCAAAGAC
* * *
6882042 CCCCGAGTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGG
66 CCCCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGG
* * * *
6882107 GTTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAG
131 GCTATCTG---ACCAAAGACCTCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
* * * * * *
6882172 CACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAATACCTTTGAGTTCGATTA
193 CACAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
6882227 CACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAACAAA
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT-CC--C-AA
** * * * *
6882292 AGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAG
62 AGACCCCCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTGCAGCACAACTTAAGTCGAG
6882356 AAGGGCTATCTG-CCAAAGATCC-CCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTAC
127 AAGGGCTATCTGACCAAAGA-CCTCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTAC
* ** *
6882419 AGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTA
191 AGCACAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
6882476 CGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAGAAGGGCTATATGCCAAAGAC
1 CACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTCCCAAAGAC
* *
6882541 TCCCGAGTTCGATTACACTCA
66 CCCCGAGTTCGACTACACTCA
6882562 ACTGCGGGGT
Statistics
Matches: 289, Mismatches: 41, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
245 22 0.08
246 1 0.00
248 1 0.00
249 142 0.49
250 53 0.18
251 1 0.00
253 44 0.15
254 25 0.09
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (247 bp):
CACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTCCCAAAGAC
CCCCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGG
GCTATCTGACCAAAGACCTCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCAC
AACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
Found at i:6882459 original size:165 final size:165
Alignment explanation
Indices: 6881979--6882610 Score: 779
Period size: 165 Copynumber: 3.8 Consensus size: 165
6881969 AAAGGGTCCA
* * *
6881979 CTCAGCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCC
1 CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCC
* * * * *
6882044 CCGAGTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGT
66 CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGT
* *
6882109 TATCTGCCAACC-AAAGACCTTCGAGTTCGATTACA
131 TATCTG-CAACCAAAAGACCTTCGAGTTCGACTACG
* * * * * * * *
6882144 CTCAGCTTCGAGGGCACATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAA
1 CTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCC-A-AAGA
** * * * * * *
6882209 TACCTTTGAGTTCGATTACACTCAGC-TCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGA
63 T-CC-CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGA
*
6882273 AGGGTTATCTACCAA-CAAAAGACCTTCGAGTTCGACTACG
126 AGGGTTATCT-GCAACCAAAAGACCTTCGAGTTCGACTACG
*
6882313 CTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCC
1 CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCC
* *
6882378 CCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGT
66 CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGT
**
6882443 TATCTGTGACCAAAAGACCTTCGAGTTCGACTACG
131 TATCTGCAACCAAAAGACCTTCGAGTTCGACTACG
* *
6882478 CTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAGAAGGGCTATATGCCAAAGA-CT
1 CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATC-
* * * * * * *
6882542 CCCGAGTTCGATTACACTCAACTGCG-GGGTCATATCATTTACAACATAGCTCATGGCAAGAAGG
65 CCCGAGTTCGATTACACTCAGCTTCGAGGG-CACATCATTTACAGCATAACTCAAGGCGAGAAGG
6882606 GTTAT
129 GTTAT
6882611 TTGTCAATAA
Statistics
Matches: 403, Mismatches: 53, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
164 23 0.06
165 190 0.47
166 46 0.11
167 2 0.00
168 47 0.12
169 76 0.19
170 19 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (165 bp):
CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCC
CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGT
TATCTGCAACCAAAAGACCTTCGAGTTCGACTACG
Found at i:6883278 original size:40 final size:40
Alignment explanation
Indices: 6883234--6883313 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
6883224 AAACATTTTG
6883234 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
1 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
* *
6883274 AAAATATATATTATATAGTTTTTGAAATCATTTTTGAAAA
1 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
6883314 CATATAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (40 bp):
AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
Found at i:6883502 original size:15 final size:14
Alignment explanation
Indices: 6883442--6883509 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
6883432 TGAAAAATAT
*
6883442 TTTTTATTATTATAA
1 TTTTTATTATT-TTA
* *
6883457 TTGTCATT-TTTTA
1 TTTTTATTATTTTA
6883470 TTTTAGTATTATTATTA
1 TTTT--TATTATT-TTA
6883487 TTTTTATTAATTTTA
1 TTTTTATT-ATTTTA
6883502 TTTTTATT
1 TTTTTATT
6883510 GTTCATGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
13 5 0.12
14 2 0.05
15 24 0.56
16 5 0.12
17 7 0.16
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTTATTATTTTA
Found at i:6890232 original size:165 final size:165
Alignment explanation
Indices: 6889959--6890774 Score: 1044
Period size: 165 Copynumber: 4.9 Consensus size: 165
6889949 ACCTACCACC
*
6889959 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAAGTCGA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTT-AAGTCGA
*** *
6890024 GAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACA
65 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACA
* *
6890089 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
130 GCATAACTCAAGGCGAGAAGGGTTATCTGCGACCAA
* * * * *
6890125 AAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
* * * *
6890190 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAG
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAG
* * * *
6890255 CACAACTTAAGTCGAGAAGGGTTATCTGCCAACC-A
131 CATAACTCAAGGCGAGAAGGGTTATCTG-CGACCAA
* ** * * * * *
6890290 AAGACCTTCGAGTTCGATTATACTCAGCTTCGAGGGCACATCATTTGCAGCACAACTTAAGTCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGA
* * *** *
6890355 GAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGATTACACTCAGCTCCAA-GGCATATCATT
65 GAAGGGCTATCTG-C--C-AAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGGCATATCATT
* * * * *
6890419 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAA
126 TACAGCATAACTCAAGGCGAGAAGGGTTATCTGCGACCAA
*
6890459 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
* * * *
6890524 AAGGGCTATCTGCCAAAGATCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAG
* *
6890589 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CATAACTCAAGGCGAGAAGGGTTATCTGCGACCAA
*
6890624 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
* * * *
6890689 AAGGGCTATCTGCCAAAGACTCCCGAGTTCGATTACACTCAACTGC-GGGGTCATATCATTTACA
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGG-CATATCATTTACA
* * * *
6890753 ACATAGCTCATGGCAAGAAGGG
130 GCATAACTCAAGGCGAGAAGGG
6890775 CTATTTGTCA
Statistics
Matches: 563, Mismatches: 78, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
164 30 0.05
165 294 0.52
166 95 0.17
167 2 0.00
168 44 0.08
169 69 0.12
170 29 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (165 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAG
CATAACTCAAGGCGAGAAGGGTTATCTGCGACCAA
Found at i:6890452 original size:84 final size:84
Alignment explanation
Indices: 6889959--6890704 Score: 827
Period size: 84 Copynumber: 9.0 Consensus size: 84
6889949 ACCTACCACC
* * * *
6889959 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAAGTCGA
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTT-AAGTCGA
*
6890024 GAAGGGCTATCTG-C--C-A
65 GAAGGGTTATCTGCCAACAA
* * * * * * * *
6890040 AAGACCCTT-AAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCT
1 AAGA-CCTTCGAGTTCGATTACACTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCG
** *
6890104 AGAAGGGTTATCTGTGACCAA
64 AGAAGGGTTATCTGCCAACAA
* * * *
6890125 AAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
6890190 AAGGGCTATCTG-C--C-A
66 AAGGGTTATCTGCCAACAA
** * * *
6890205 AAGACCCCCGAGTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAGCACAACTTAAGTCGA
1 AAGACCTTCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
*
6890270 GAAGGGTTATCTGCCAACCA
65 GAAGGGTTATCTGCCAACAA
* * * * *
6890290 AAGACCTTCGAGTTCGATTATACTCAGCTTCGAGGGCACATCATTTGCAGCACAACTTAAGTCTA
1 AAGACCTTCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
*
6890355 GAAGGGTTGTCTGCCAACAA
65 GAAGGGTTATCTGCCAACAA
* *
6890375 AAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
6890440 AAGGGTTATCTGCCAACAA
66 AAGGGTTATCTGCCAACAA
* * * *
6890459 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
6890524 AAGGGCTATCTG-C--C-A
66 AAGGGTTATCTGCCAACAA
* * * * * * * *
6890539 AAGATCC-CCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCT
1 AAGA-CCTTCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
** *
6890603 AGAAGGGTTATCTGTGACCAA
64 AGAAGGGTTATCTGCCAACAA
* * * *
6890624 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
6890689 AAGGGCTATCTGCCAA
66 AAGGGTTATCTGCCAA
6890705 AGACTCCCGA
Statistics
Matches: 561, Mismatches: 85, Indels: 35
0.82 0.12 0.05
Matches are distributed among these distances:
80 48 0.09
81 127 0.23
82 23 0.04
83 1 0.00
84 208 0.37
85 154 0.27
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (84 bp):
AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
AAGGGTTATCTGCCAACAA
Found at i:6890565 original size:334 final size:333
Alignment explanation
Indices: 6889959--6890704 Score: 1070
Period size: 334 Copynumber: 2.2 Consensus size: 333
6889949 ACCTACCACC
*
6889959 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAAGTCGA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTT-AAGTCGA
*
6890024 GAAGGGCTATCTG-C--CAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTT
65 GAAGGGCTATCTGCCAACAAAGACCCTTAAGTTCGATTACACTCAGCTCCAAGGGCATAACATTT
* ** * * *
6890086 ACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTTGAGTTCGATTACACTCA
130 ACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* *
6890151 GCTCCAAGGCACATCATTTACAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGA
195 GCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAA
* * * *
6890216 GTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGTTATC
260 GTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCACAACTCAAGGCGAGAAGGGTTATC
6890281 TGCCAACC-A
325 TG-CAACCAA
* ** * * * * *
6890290 AAGACCTTCGAGTTCGATTATACTCAGCTTCGAGGGCACATCATTTGCAGCACAACTTAAGTCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGA
* * * * *
6890355 GAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGATTACACTCAGCTCCAA-GGCATATCATT
65 GAAGGGCTATCTGCCAAC-AAAGACCCTTAAGTTCGATTACACTCAGCTCCAAGGGCATAACATT
* * * *
6890419 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTC
129 TACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTC
* * *
6890484 AGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCCCCA
194 AGCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCA
* *
6890549 AGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTAT
259 AGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCACAACTCAAGGCGAGAAGGGTTAT
**
6890614 CTGTGACCAA
324 CTGCAACCAA
*
6890624 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
6890689 AAGGGCTATCTGCCAA
66 AAGGGCTATCTGCCAA
6890705 AGACTCCCGA
Statistics
Matches: 360, Mismatches: 49, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
331 42 0.12
332 25 0.07
333 48 0.13
334 214 0.59
335 31 0.09
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (333 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
AAGGGCTATCTGCCAACAAAGACCCTTAAGTTCGATTACACTCAGCTCCAAGGGCATAACATTTA
CAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAG
CTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAG
TTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCACAACTCAAGGCGAGAAGGGTTATCT
GCAACCAA
Found at i:6891449 original size:40 final size:40
Alignment explanation
Indices: 6891405--6891484 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
6891395 AAACATTTTG
6891405 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
1 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
* *
6891445 AAAATATATATTATATAGTTTTTGAAATCATTTTTGAAAA
1 AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
6891485 CATATAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (40 bp):
AAAATATATAATATATAGTTTTTGAAAACATTTTTGAAAA
Found at i:6891667 original size:15 final size:14
Alignment explanation
Indices: 6891607--6891674 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
6891597 TTGAAAATAT
*
6891607 TTTTTATTATTATAA
1 TTTTTATTATT-TTA
* *
6891622 TTGTCATT-TTTTA
1 TTTTTATTATTTTA
6891635 TTTTAGTATTATTATTA
1 TTTT--TATTATT-TTA
6891652 TTTTTATTAATTTTA
1 TTTTTATT-ATTTTA
6891667 TTTTTATT
1 TTTTTATT
6891675 GTTCATGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
13 5 0.12
14 2 0.05
15 24 0.56
16 5 0.12
17 7 0.16
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTTATTATTTTA
Found at i:6894597 original size:43 final size:45
Alignment explanation
Indices: 6894548--6894686 Score: 123
Period size: 45 Copynumber: 3.2 Consensus size: 45
6894538 GAAAAATGGA
*
6894548 AAAAAAAAATTAGAGG-CATAAATTATAAA-AGT-AAAAGTGAGATT
1 AAAAAAAAATTAGAGGTC-TAAATTATAAAGA-TAAAAAATGAGATT
* *
6894592 --GAAAAAATTATG-GGTCTCAATTATAAAGATAAAAAATGAGATT
1 AAAAAAAAATTA-GAGGTCTAAATTATAAAGATAAAAAATGAGATT
** *
6894635 AAAAAAAAATTAGA-GTCT-TTTATATTAAAGATAAAAAGTGAGATT
1 AAAAAAAAATTAGAGGTCTAAAT-TA-TAAAGATAAAAAATGAGATT
6894680 AAAAAAA
1 AAAAAAA
6894687 TCAAAGGGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 17
0.77 0.07 0.17
Matches are distributed among these distances:
42 22 0.28
43 15 0.19
44 7 0.09
45 35 0.44
ACGTcount: A:0.57, C:0.03, G:0.14, T:0.26
Consensus pattern (45 bp):
AAAAAAAAATTAGAGGTCTAAATTATAAAGATAAAAAATGAGATT
Found at i:6894640 original size:89 final size:90
Alignment explanation
Indices: 6894548--6894713 Score: 214
Period size: 87 Copynumber: 1.9 Consensus size: 90
6894538 GAAAAATGGA
* * *
6894548 AAAAAAAAATTAGAGGCATAAATTATAAAAG-T-AAAAGTGAGATTGAAAAAAT-TATGGGTCTC
1 AAAAAAAAATTAGAGGCATAAA-TATAAAAGATAAAAAGTGAGATTAAAAAAATCAAAGGGTCTC
6894610 AATTATAAA-GATAAAAAATGAGATT
65 AATTATAAACGATAAAAAATGAGATT
* * ** * *
6894635 AAAAAAAAATTAGAGTCTTTTATATTAAAGATAAAAAGTGAGATTAAAAAAATCAAAGGGTCTCG
1 AAAAAAAAATTAGAGGCATAAATATAAAAGATAAAAAGTGAGATTAAAAAAATCAAAGGGTCTCA
6894700 ATTATAAACGATAA
66 ATTATAAACGATAA
6894714 TAATCACATG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
86 7 0.11
87 19 0.29
88 19 0.29
89 16 0.24
90 5 0.08
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (90 bp):
AAAAAAAAATTAGAGGCATAAATATAAAAGATAAAAAGTGAGATTAAAAAAATCAAAGGGTCTCA
ATTATAAACGATAAAAAATGAGATT
Found at i:6894713 original size:45 final size:42
Alignment explanation
Indices: 6894580--6894713 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 42
6894570 TTATAAAAGT
* * *
6894580 AAAAGTGAGATTGAAAAAATTATGGGTCTCAATTATAAAGATA
1 AAAAGTGAGATTAAAAAAATAAAGGGTCTC-ATTATAAAGATA
* * **
6894623 AAAAATGAGATTAAAAAAA-AATTAGAGTCTTTTATATTAAAGATA
1 AAAAGTGAGATTAAAAAAATAA--AGGGTCTCAT-TA-TAAAGATA
6894668 AAAAGTGAGATTAAAAAAATCAAAGGGTCTCGATTATAAACGATA
1 AAAAGTGAGATTAAAAAAAT-AAAGGGTCTC-ATTATAAA-GATA
6894713 A
1 A
6894714 TAATCACATG
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 18 0.25
44 11 0.15
45 39 0.54
46 1 0.01
47 2 0.03
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.27
Consensus pattern (42 bp):
AAAAGTGAGATTAAAAAAATAAAGGGTCTCATTATAAAGATA
Found at i:6901095 original size:60 final size:60
Alignment explanation
Indices: 6900982--6901110 Score: 145
Period size: 60 Copynumber: 2.1 Consensus size: 60
6900972 TTAGGGTAAT
* ** * *
6900982 TTATAGAAATGGTCCCTCAACTATAGGGTGTTGTTTTGTCGAGTTCTTCAACTATTAAAAG
1 TTATA-AAATGGTCCCTAAACTATAGCATGTTGTTTTGTCGAGTCCGTCAACTATTAAAAG
* *
6901043 TTATAAAATGGTCCCTAAACTATATGCAT-TTGTTTTGTTGAGTCCCGT-AACTATTGAAAG
1 TTATAAAATGGTCCCTAAACTATA-GCATGTTGTTTTGTCGAGT-CCGTCAACTATTAAAAG
*
6901103 TTACAAAA
1 TTATAAAA
6901111 ATTGTCATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
60 49 0.84
61 9 0.16
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (60 bp):
TTATAAAATGGTCCCTAAACTATAGCATGTTGTTTTGTCGAGTCCGTCAACTATTAAAAG
Found at i:6902161 original size:18 final size:18
Alignment explanation
Indices: 6902124--6902159 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
6902114 TCCTTTTACT
*
6902124 TTTTTAATAAATATTAAA
1 TTTTTAATAAATAATAAA
6902142 TTTTTATATAAATAATAA
1 TTTTTA-ATAAATAATAA
6902160 TTAAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTTTAATAAATAATAAA
Found at i:6909855 original size:21 final size:23
Alignment explanation
Indices: 6909816--6909857 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
6909806 TTTTTTAAAG
6909816 TATAAGATAATTTATAATTATTT
1 TATAAGATAATTTATAATTATTT
*
6909839 TATAA-ATATTTTA-AATTAT
1 TATAAGATAATTTATAATTAT
6909858 ATATATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATAAGATAATTTATAATTATTT
Found at i:6911373 original size:6 final size:6
Alignment explanation
Indices: 6911362--6911388 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6911352 AATAATATAT
6911362 TAACCA TAACCA TAACCA TAACCA TAA
1 TAACCA TAACCA TAACCA TAACCA TAA
6911389 AAATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (6 bp):
TAACCA
Found at i:6920609 original size:31 final size:31
Alignment explanation
Indices: 6920571--6920713 Score: 214
Period size: 31 Copynumber: 4.6 Consensus size: 31
6920561 TTCAATGTGC
6920571 TTTTAATCACTCAATTTTGACATTATTCTTG
1 TTTTAATCACTCAATTTTGACATTATTCTTG
6920602 TTTTAATCACTCAATTTTGACATTATTCTTG
1 TTTTAATCACTCAATTTTGACATTATTCTTG
* * *
6920633 TTTTAATCACTCATTTTTAACATTATTATTG
1 TTTTAATCACTCAATTTTGACATTATTCTTG
** *
6920664 TTTTAATCACTCAGGTTTGACATTATTTTTG
1 TTTTAATCACTCAATTTTGACATTATTCTTG
*
6920695 TTTTAATCTCTCAACTTTT
1 TTTTAATCACTCAA-TTTT
6920714 AGGTTTTCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 98 0.97
32 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.53
Consensus pattern (31 bp):
TTTTAATCACTCAATTTTGACATTATTCTTG
Found at i:6922618 original size:42 final size:41
Alignment explanation
Indices: 6922530--6922851 Score: 391
Period size: 42 Copynumber: 7.7 Consensus size: 41
6922520 ATTTTGGACT
* *
6922530 ATCGCAA-CGAACTTGGAATAAATCGCAACGCGAACTTGGACT--
1 ATCGCAAGCGAACTTGGACT--ATCGCAA--CGAACTTGGAATAA
* * **
6922572 ATCGCAA-CGAATTTGGAATAAATCGCAAAAAACTTGGAATAA
1 ATCGCAAGCGAACTTGGACT--ATCGCAACGAACTTGGAATAA
6922614 ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
1 ATCGCAA-GCGAACTTGGACTATCGCAACGAACTTGGAATAA
* * *
6922656 ATCGCAACGCAAACTTGAACTATCGCAACGAATTTGGAATAA
1 ATCGCAA-GCGAACTTGGACTATCGCAACGAACTTGGAATAA
*
6922698 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
1 ATCGCAA-GCGAACTTGGACTATCGCAACGAACTTGGAATAA
*
6922740 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAA-GCGAACTTGGACTATCGCAACGAACTTGGAATAA
* *
6922782 ATCGCAATGCGAACTTCGACTATTGCAACGAACTTGGAATAA
1 ATCGCAA-GCGAACTTGGACTATCGCAACGAACTTGGAATAA
6922824 ATCGCAACGCGAACTTGGACTATCGCAA
1 ATCGCAA-GCGAACTTGGACTATCGCAA
6922852 TGCGAATATG
Statistics
Matches: 252, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
40 9 0.04
42 233 0.92
44 10 0.04
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (41 bp):
ATCGCAAGCGAACTTGGACTATCGCAACGAACTTGGAATAA
Found at i:6922629 original size:63 final size:63
Alignment explanation
Indices: 6922530--6922788 Score: 325
Period size: 63 Copynumber: 4.1 Consensus size: 63
6922520 ATTTTGGACT
* *
6922530 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACAAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
*
6922593 ATCGCAAAAAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
1 ATCGCAACAAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
* * *
6922656 ATCGCAACGCAAACTT-GAACT--ATCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTCG
1 ATCGCAA--CAAACTTGGAA-TAAATCGCAACGCGAACTTGGACT--ATCGCAA--CGAACTTGG
*
6922716 ACT--
59 AATAA
* *
6922719 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACAAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
6922782 ATCGCAA
1 ATCGCAA
6922789 TGCGAACTTC
Statistics
Matches: 168, Mismatches: 14, Indels: 28
0.80 0.07 0.13
Matches are distributed among these distances:
61 26 0.15
62 3 0.02
63 109 0.65
64 3 0.02
65 27 0.16
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (63 bp):
ATCGCAACAAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
Found at i:6929053 original size:24 final size:26
Alignment explanation
Indices: 6929026--6929084 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 26
6929016 AGTAGTGACC
6929026 AATTTTTTT-A-TCAATTAAATTATT
1 AATTTTTTTGAGTCAATTAAATTATT
*
6929050 AATTTATTTTGATGTTAATTAAATTATT
1 AATTT-TTTTGA-GTCAATTAAATTATT
6929078 AATTTTT
1 AATTTTT
6929085 AAATTTTCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.17
25 4 0.13
26 1 0.03
27 2 0.07
28 18 0.60
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (26 bp):
AATTTTTTTGAGTCAATTAAATTATT
Found at i:6931865 original size:117 final size:116
Alignment explanation
Indices: 6931639--6931870 Score: 385
Period size: 117 Copynumber: 2.0 Consensus size: 116
6931629 GAAACCTATT
*
6931639 ATAAGTACCCTTATTGAATACTTCTAAACTATAAATGAAGGATAATGACAGTAGCGAACCCATTA
1 ATAAGTACCCTTATTGAATACTTCTAAACTAAAAATGAAGGATAATGACAGTAGCGAACCCATTA
*
6931704 ACCTAGATAGCCCCCCAATCCACTTTCCAAGAATTGATTCAAACCCTAATGG
66 ACCTAGATAACCCCCCAATCCACTTTCCAAGAATTGATTCAAA-CCTAATGG
* * *
6931756 ATAAGTATCCTTATTGAATACTTCTAAACTAAAAATTAAGGATAATGACAGTAGTGAACCCATTA
1 ATAAGTACCCTTATTGAATACTTCTAAACTAAAAATGAAGGATAATGACAGTAGCGAACCCATTA
*
6931821 ACCTAGATAACCCCCC-ATCCTCTTTCCAAGAATTGATTCAAAACCTAATG
66 ACCTAGATAACCCCCCAATCCACTTTCCAAGAATTGATTC-AAACCTAATG
6931871 CATCCATATA
Statistics
Matches: 108, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
116 29 0.27
117 79 0.73
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (116 bp):
ATAAGTACCCTTATTGAATACTTCTAAACTAAAAATGAAGGATAATGACAGTAGCGAACCCATTA
ACCTAGATAACCCCCCAATCCACTTTCCAAGAATTGATTCAAACCTAATGG
Found at i:6932621 original size:115 final size:115
Alignment explanation
Indices: 6932419--6932648 Score: 460
Period size: 115 Copynumber: 2.0 Consensus size: 115
6932409 GAAAATAAAT
6932419 GCCCCCCAAAAATAGTTTCCATGAAACCGTATTGAGACAAAAACAAAAGCTACACAGTGCATATA
1 GCCCCCCAAAAATAGTTTCCATGAAACCGTATTGAGACAAAAACAAAAGCTACACAGTGCATATA
6932484 TCAATATAGCTGCTAATCAGATCATAACTACTTCAAGAGTAACAGCAATC
66 TCAATATAGCTGCTAATCAGATCATAACTACTTCAAGAGTAACAGCAATC
6932534 GCCCCCCAAAAATAGTTTCCATGAAACCGTATTGAGACAAAAACAAAAGCTACACAGTGCATATA
1 GCCCCCCAAAAATAGTTTCCATGAAACCGTATTGAGACAAAAACAAAAGCTACACAGTGCATATA
6932599 TCAATATAGCTGCTAATCAGATCATAACTACTTCAAGAGTAACAGCAATC
66 TCAATATAGCTGCTAATCAGATCATAACTACTTCAAGAGTAACAGCAATC
6932649 AATTCTTAAT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.22
Consensus pattern (115 bp):
GCCCCCCAAAAATAGTTTCCATGAAACCGTATTGAGACAAAAACAAAAGCTACACAGTGCATATA
TCAATATAGCTGCTAATCAGATCATAACTACTTCAAGAGTAACAGCAATC
Found at i:6936614 original size:26 final size:26
Alignment explanation
Indices: 6936585--6936641 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
6936575 CACAATCATT
6936585 GAAACATCATAGGAGTTTTTAATTTA
1 GAAACATCATAGGAGTTTTTAATTTA
6936611 GAAACATCATAGGAGTTTTTAATTTA
1 GAAACATCATAGGAGTTTTTAATTTA
*
6936637 AAAAC
1 GAAAC
6936642 TCCGCATCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (26 bp):
GAAACATCATAGGAGTTTTTAATTTA
Found at i:6937833 original size:30 final size:30
Alignment explanation
Indices: 6937797--6937880 Score: 120
Period size: 29 Copynumber: 2.9 Consensus size: 30
6937787 AACAATTTTT
6937797 AATAATTA-CAAAAATATCACCTTTTTTAAA
1 AATAATTACCAAAAATATCA-CTTTTTTAAA
*
6937827 AATAATTACCAAAAATATCAC-TTTTTCAA
1 AATAATTACCAAAAATATCACTTTTTTAAA
*
6937856 AATAATTATC-AAAATATCACTTTTT
1 AATAATTACCAAAAATATCACTTTTT
6937881 CTCAAAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
28 10 0.20
29 20 0.40
30 9 0.18
31 11 0.22
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (30 bp):
AATAATTACCAAAAATATCACTTTTTTAAA
Found at i:6937861 original size:29 final size:28
Alignment explanation
Indices: 6937797--6937898 Score: 118
Period size: 29 Copynumber: 3.5 Consensus size: 28
6937787 AACAATTTTT
*
6937797 AATAATTACAAAAATATCACCTTTTTTAAA
1 AATAATTACAAAAATATCA-C-TTTTTCAA
6937827 AATAATTACCAAAAATATCACTTTTTCAA
1 AATAATTA-CAAAAATATCACTTTTTCAA
6937856 AATAATTATC-AAAATATCACTTTTTCTCAA
1 AATAATTA-CAAAAATATCAC-TTTT-TCAA
6937886 AA-AATTTACAAAA
1 AATAA-TTACAAAA
6937899 CTAACACCCT
Statistics
Matches: 65, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
28 10 0.15
29 23 0.35
30 21 0.32
31 11 0.17
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (28 bp):
AATAATTACAAAAATATCACTTTTTCAA
Found at i:6937947 original size:28 final size:29
Alignment explanation
Indices: 6937908--6937978 Score: 117
Period size: 28 Copynumber: 2.5 Consensus size: 29
6937898 ACTAACACCC
*
6937908 TTAACAATATTTACGAAACTATCA-TATT
1 TTAACAATATTTACGAAACTAACATTATT
*
6937936 TTAACAATATTTACGAAACTAACATTTTT
1 TTAACAATATTTACGAAACTAACATTATT
6937965 TTAACAATATTTAC
1 TTAACAATATTTAC
6937979 AAAATACCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 23 0.57
29 17 0.43
ACGTcount: A:0.42, C:0.14, G:0.03, T:0.41
Consensus pattern (29 bp):
TTAACAATATTTACGAAACTAACATTATT
Found at i:6938582 original size:20 final size:20
Alignment explanation
Indices: 6938548--6938606 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
6938538 CACTTCATTT
*
6938548 TATTTTATTCT-TAGTGTTAA
1 TATTTTATT-TATAGTGCTAA
6938568 TATTTTATTTATAGTGCTAA
1 TATTTTATTTATAGTGCTAA
*
6938588 T-TATTTATTTATATTGCTA
1 TAT-TTTATTTATAGTGCTA
6938607 TAATATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 33 0.94
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TATTTTATTTATAGTGCTAA
Found at i:6938616 original size:2 final size:2
Alignment explanation
Indices: 6938605--6938702 Score: 189
Period size: 2 Copynumber: 49.5 Consensus size: 2
6938595 TTTATATTGC
6938605 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6938646 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6938688 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
6938703 TATTGTGGCA
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 94 0.99
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6940799 original size:43 final size:43
Alignment explanation
Indices: 6940670--6940792 Score: 228
Period size: 43 Copynumber: 2.9 Consensus size: 43
6940660 GTAACGCTAT
*
6940670 ATAGGTGTTGATATTTAGCGGCGTTTTTCCCACAAACGCCGCA
1 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACGCCGCA
6940713 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACGCCGCA
1 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACGCCGCA
*
6940756 ATAGGTGTTGAGATTTAGTGGCGTTTTTCCCACAAAC
1 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAAC
6940793 ATCGCAAAAG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 78 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (43 bp):
ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACGCCGCA
Found at i:6940834 original size:86 final size:86
Alignment explanation
Indices: 6940670--6940839 Score: 200
Period size: 86 Copynumber: 2.0 Consensus size: 86
6940660 GTAACGCTAT
* * * * * * *
6940670 ATAGGTGTTGATATTTAGCGGCGTTTTTCCCACAAACGCCGCAATAGGTGTTGAGATTTAGCGGC
1 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACACCGCAAAAGATGCTGAGATATAGAGGC
* *
6940735 GTTTTTCCCACAAACGCCGCA
66 GTTTTTACAACAAACGCCGCA
* *
6940756 ATAGGTGTTGAGATTTAGTGGCGTTTTTCCCACAAACATCGCAAAAGAT-CTG-GTATATAGAGG
1 ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACACCGCAAAAGATGCTGAG-ATATAGAGG
*
6940819 CGTTTTTTAGAACAAACGCCG
65 CG-TTTTTACAACAAACGCCG
6940840 TAAAAGGTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
84 1 0.01
85 11 0.16
86 58 0.83
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (86 bp):
ATAGGTGTTGAGATTTAGCGGCGTTTTTCCCACAAACACCGCAAAAGATGCTGAGATATAGAGGC
GTTTTTACAACAAACGCCGCA
Found at i:6941021 original size:21 final size:21
Alignment explanation
Indices: 6940995--6941053 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
6940985 ATTTTCCAAT
*
6940995 AAACTTGACATCCATAACAAC
1 AAACTTGAAATCCATAACAAC
* *
6941016 AAACTTAAAATCCATAACAAG
1 AAACTTGAAATCCATAACAAC
**
6941037 AAAAATGAAATCCATAA
1 AAACTTGAAATCCATAA
6941054 TAATAAATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (21 bp):
AAACTTGAAATCCATAACAAC
Found at i:6943875 original size:41 final size:41
Alignment explanation
Indices: 6943832--6944177 Score: 301
Period size: 41 Copynumber: 8.4 Consensus size: 41
6943822 CCTTACAATA
** *
6943832 TTTAGCGGCGTTTATATA-AAAGCGCCGTTAAAGTATGAGTA
1 TTTAGCGGCGTTTATATATAAA-CGCCACTAAAGTATGAGTC
* *
6943873 TTTAGCGGCGTTTATATAAAAACACCACTAAAGTATGAGTC
1 TTTAGCGGCGTTTATATATAAACGCCACTAAAGTATGAGTC
* * * * * *
6943914 TTTAGCAGCATTTGTATATAAATGACACTAAAGTACGAGTC
1 TTTAGCGGCGTTTATATATAAACGCCACTAAAGTATGAGTC
* *
6943955 TTTAGCGGCGTTTTTATATAAACGCCACTAAAGTACGAGTC
1 TTTAGCGGCGTTTATATATAAACGCCACTAAAGTATGAGTC
* * *
6943996 TTTAGCGGCATTTTTATATAAACGCCACTGAAA-TATGAGTT
1 TTTAGCGGCGTTTATATATAAACGCCACT-AAAGTATGAGTC
* * * *
6944037 TTTAGCGGTGTTTGTATAAAAACGCCACTAAA-TCACGAGTC
1 TTTAGCGGCGTTTATATATAAACGCCACTAAAGT-ATGAGTC
* * * *
6944078 TATAGCGGCGTTTGCA-ATA-AAAGCGTCACTAAAGTACGACTC
1 TTTAGCGGCGTTT--ATATATAAA-CGCCACTAAAGTATGAGTC
* * * * *
6944120 TATATCGGCGTTTATACAAAAACGCCACTAAA-TGA-CAGTC
1 TTTAGCGGCGTTTATATATAAACGCCACTAAAGT-ATGAGTC
* *
6944160 TTTAACGTCGTTTATATA
1 TTTAGCGGCGTTTATATA
6944178 AAAAATACAC
Statistics
Matches: 255, Mismatches: 40, Indels: 21
0.81 0.13 0.07
Matches are distributed among these distances:
40 23 0.09
41 192 0.75
42 39 0.15
43 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTATATATAAACGCCACTAAAGTATGAGTC
Found at i:6943983 original size:82 final size:82
Alignment explanation
Indices: 6943860--6944220 Score: 338
Period size: 82 Copynumber: 4.4 Consensus size: 82
6943850 AAAGCGCCGT
* * * * *
6943860 TAAAGTATGAGTATTTAGCGGCGTTTATATAAAAACACCACTAAAGTATGAGTCTTTAGCAGCAT
1 TAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGCAT
*
6943925 TTGTATATAAATGACAC
66 TTGTATATAAACGACAC
* *
6943942 TAAAGTACGAGTCTTTAGCGGCGTTTTTATATAAACGCCACTAAAGTACGAGTCTTTAGCGGCAT
1 TAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGCAT
* *
6944007 TTTTATATAAACGCCAC
66 TTGTATATAAACGACAC
* * * * *
6944024 TGAAA-TATGAGTTTTTAGCGGTGTTTGTATAAAAACGCCACTAAA-TCACGAGTCTATAGCGGC
1 T-AAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACGCCACTAAAGT-ACGAGTCTTTAGCGGC
* * *
6944087 GTTTGCA-ATAAAAGCGTCAC
64 ATTTGTATAT-AAA-CGACAC
* * * * * * *
6944107 TAAAGTACGACTCTATATCGGCGTTTATACAAAAACGCCACTAAA-TGAC-AGTCTTTAACGTCG
1 TAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACGCCACTAAAGT-ACGAGTCTTTAGCGGCA
* * **
6944170 TTTATATAAAAAATACAC
65 TTTGTATATAAACGACAC
* * * *
6944188 TAAAGTAC-ATTCTTTAACGGCATTTTTATAAAA
1 TAAAGTACGAGTCTTTAGCGGCGTTTATATAAAA
6944221 GTGTCGCTAT
Statistics
Matches: 229, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
80 19 0.08
81 14 0.06
82 151 0.66
83 45 0.20
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (82 bp):
TAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGCAT
TTGTATATAAACGACAC
Found at i:6944000 original size:123 final size:121
Alignment explanation
Indices: 6943832--6944255 Score: 408
Period size: 123 Copynumber: 3.5 Consensus size: 121
6943822 CCTTACAATA
* ** * * *
6943832 TTTAGCGGCGTTTATATAAAAGCGCCGTTAAAGTATGAGTATTTAGCGGCGTTTATATAAAAACA
1 TTTAGCGGCGTTTTTATAAAAGCGCCACTAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACG
* *
6943897 CCACTAAAGTATGAGTCTTTAGCAGCATTTGTATATAAATGACACTAAAGTACGAGTC
66 CCACTAAA-TATGAGTCTTTAGC-GCGTTTGTATAAAAATGACACTAAAGTACGAGTC
* * *
6943955 TTTAGCGGCGTTTTTATATAAA-CGCCACTAAAGTACGAGTCTTTAGCGGCATTTTTATATAAAC
1 TTTAGCGGCGTTTTTATA-AAAGCGCCACTAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAAC
* * * *
6944019 GCCACTGAAATATGAGTTTTTAGCGGTGTTTGTATAAAAACGCCACTAAA-TCACGAGTC
65 GCCACT-AAATATGAGTCTTTAGC-GCGTTTGTATAAAAATGACACTAAAGT-ACGAGTC
* ** * * * * *
6944078 TATAGCGGCGTTTGCAATAAAAGCGTCACTAAAGTACGACTCTATATCGGCGTTTATACAAAAAC
1 TTTAGCGGCGTTT-TTATAAAAGCGCCACTAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAAC
* * * *
6944143 GCCACTAAATGA-CAGTCTTTAACGTCGTTTATATAAAAAAT-ACACTAAAGTAC-ATTC
65 GCCACTAAAT-ATGAGTCTTTAGCG-CGTTTGTAT-AAAAATGACACTAAAGTACGAGTC
* * * * * * * *
6944200 TTTAACGGCATTTTTATAAAAGTGTCGCTATAGTACTAGTTTTTAGCGGCGTTTAT
1 TTTAGCGGCGTTTTTATAAAAGCGCCACTAAAGTACGAGTCTTTAGCGGCGTTTAT
6944256 TCTAAAAATG
Statistics
Matches: 244, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
121 33 0.14
122 15 0.06
123 140 0.57
124 56 0.23
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (121 bp):
TTTAGCGGCGTTTTTATAAAAGCGCCACTAAAGTACGAGTCTTTAGCGGCGTTTATATAAAAACG
CCACTAAATATGAGTCTTTAGCGCGTTTGTATAAAAATGACACTAAAGTACGAGTC
Found at i:6944189 original size:40 final size:40
Alignment explanation
Indices: 6944104--6944220 Score: 101
Period size: 40 Copynumber: 2.9 Consensus size: 40
6944094 ATAAAAGCGT
* * * * * ***
6944104 CACTAAAGTACGACTCTATATCGGCGTTTATACAAAAACGC
1 CACTAAAGTAC-AGTCTTTAACGGCATTTATATAAAAAATA
* *
6944145 CACTAAA-TGACAGTCTTTAACGTCGTTTATATAAAAAATA
1 CACTAAAGT-ACAGTCTTTAACGGCATTTATATAAAAAATA
* *
6944185 CACTAAAGTACATTCTTTAACGGCATTTTTATAAAA
1 CACTAAAGTACAGTCTTTAACGGCATTTATATAAAA
6944221 GTGTCGCTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
40 52 0.84
41 10 0.16
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (40 bp):
CACTAAAGTACAGTCTTTAACGGCATTTATATAAAAAATA
Found at i:6944750 original size:15 final size:15
Alignment explanation
Indices: 6944730--6944761 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6944720 TGTTCCAATC
6944730 AATGAAAGCGTGTCA
1 AATGAAAGCGTGTCA
6944745 AATGAAAGCGTGTCA
1 AATGAAAGCGTGTCA
6944760 AA
1 AA
6944762 ATAGCGCTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (15 bp):
AATGAAAGCGTGTCA
Found at i:6946121 original size:19 final size:18
Alignment explanation
Indices: 6946093--6946135 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
6946083 GTTTGTTTCT
*
6946093 AAAAAAT-AAATATTTTAA
1 AAAAAATAAAATA-TTGAA
6946111 AAAAAATTAAAATATTGAA
1 AAAAAA-TAAAATATTGAA
6946130 AAAAAA
1 AAAAAA
6946136 CATTTGGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 11 0.50
20 5 0.23
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAAAAATAAAATATTGAA
Found at i:6951990 original size:22 final size:19
Alignment explanation
Indices: 6951965--6952052 Score: 58
Period size: 18 Copynumber: 4.5 Consensus size: 19
6951955 TAGGATGAAA
6951965 ATAAAAAAATACATATATATAT
1 ATAAAAAAATA-ATA-ATA-AT
6951987 ATAAGGAAATAATAATAATAAT
1 ATAA--AAA-AATAATAATAAT
*
6952009 AT-AAAAAATAATACTAAT
1 ATAAAAAAATAATAATAAT
* *
6952027 AGT--TACAATAATAAT-AT
1 A-TAAAAAAATAATAATAAT
6952044 ATAAAAAAA
1 ATAAAAAAA
6952053 AGTAAAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
16 1 0.02
17 3 0.06
18 24 0.44
19 4 0.07
21 1 0.02
22 8 0.15
23 3 0.06
24 6 0.11
25 4 0.07
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (19 bp):
ATAAAAAAATAATAATAAT
Found at i:6952020 original size:18 final size:18
Alignment explanation
Indices: 6951997--6952051 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
6951987 ATAAGGAAAT
6951997 AATAATAATAATATAAAA
1 AATAATAATAATATAAAA
* * *
6952015 AATAATACTAATAGT-TAC
1 AATAATAATAATA-TAAAA
6952033 AATAATAAT-ATATAAAA
1 AATAATAATAATATAAAA
6952050 AA
1 AA
6952052 AAGTAAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
16 1 0.03
17 6 0.21
18 21 0.72
19 1 0.03
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAATAATAATATAAAA
Found at i:6953141 original size:2 final size:2
Alignment explanation
Indices: 6953134--6953163 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6953124 TATGAACATA
6953134 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6953164 CTATGGATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6953745 original size:36 final size:36
Alignment explanation
Indices: 6953662--6954316 Score: 516
Period size: 36 Copynumber: 18.5 Consensus size: 36
6953652 GGTTTTTTTG
* * *
6953662 TGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
*
6953699 TGTTTCAAGGGAAACTCTCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
*
6953735 TGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * *
6953771 TATTTCAAGAGAAACTGTCTTAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
* * * ** * * *
6953808 AGATCCAAAAGAAACAGTCTCAAGGGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * *
6953844 TGTTT-AATGTAAAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAA-GGGAAAC-TGTCTCAAGAGAGACAAAATT
6953873 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
6953909 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* *
6953945 TGTTTCAAGAGAAACTGTCTCAAGAGATACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
** * ** * *
6953982 ACTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * * *
6954018 TATTTCAAGGAAAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAAGGGAAAC-TGTCTCAAGAGAGACAAAATT
* *
6954047 TGTTTCAAGGGAATCTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* **
6954083 TGTTTTAAGGGAAACTGGATCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
*
6954119 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAGATAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGAC------AAAATT
* *
6954161 TGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
* ** ** * *
6954198 AGTACCAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * *
6954234 TGTTT-AATGTAAAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAA-GGGAAAC-TGTCTCAAGAGAGACAAAATT
*
6954263 TGTTTCAAGGGAAACTGTCTCAAGATAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
6954299 TGTTTCAAGGGAAACTGT
1 TGTTTCAAGGGAAACTGT
6954317 AACACCCCCA
Statistics
Matches: 493, Mismatches: 85, Indels: 81
0.75 0.13 0.12
Matches are distributed among these distances:
28 7 0.01
29 47 0.10
30 7 0.01
31 3 0.01
32 6 0.01
33 6 0.01
35 7 0.01
36 255 0.52
37 120 0.24
42 35 0.07
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.26
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
Found at i:6953954 original size:21 final size:21
Alignment explanation
Indices: 6953892--6953956 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 21
6953882 GGAAACTGTC
6953892 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
* *
6953913 TCAAG-G-G---AAA-CTGTC
1 TCAAGAGAGACAAAATTTGTT
6953928 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
6953949 TCAAGAGA
1 TCAAGAGA
6953957 AACTGTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
15 8 0.24
16 4 0.12
17 1 0.03
19 1 0.03
20 4 0.12
21 16 0.47
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:6953991 original size:174 final size:174
Alignment explanation
Indices: 6953697--6954151 Score: 759
Period size: 174 Copynumber: 2.6 Consensus size: 174
6953687 GAGACAAAAC
*
6953697 TTTGTTTCAAGGGAAACTCTCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGA
1 TTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGA
* * *
6953762 GACAAAATTTATTTCAAGAGAAACTGTCTTAAGAGAGACAAAACTTAGATCCAAAAGAAACAGTC
66 GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTACATCCAAAAGAAACAGTC
* *
6953827 TCAAGGGAGACGAAATTTGTTT-AATGTAAAACATATTCAAAGAT
131 TCAAGGGAGACGAAATTTATTTCAA-GGAAAACATATTCAAAGAT
* *
6953871 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGA
1 TTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGA
* * *
6953936 GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGATACAAAACTTACTTCCAAAAGAAACTGTC
66 GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTACATCCAAAAGAAACAGTC
6954001 TCAAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGAT
131 TCAAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGAT
* * **
6954045 TTTGTTTCAAGGGAATCTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTGGATCAAGAGA
1 TTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGA
6954110 GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAA
66 GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAA
6954152 GATAAAATTT
Statistics
Matches: 264, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
174 262 0.99
175 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (174 bp):
TTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGA
GACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTACATCCAAAAGAAACAGTC
TCAAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGAT
Found at i:6954160 original size:42 final size:42
Alignment explanation
Indices: 6954113--6954193 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
6954103 CAAGAGAGAC
*
6954113 AAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAGAT
1 AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAGAT
6954155 AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAA
1 AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAA
6954194 ACTTAGTACC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (42 bp):
AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAGAT
Found at i:6954188 original size:78 final size:79
Alignment explanation
Indices: 6954077--6954227 Score: 214
Period size: 78 Copynumber: 1.9 Consensus size: 79
6954067 CAAGAGAGAC
* * * ** *
6954077 AAAATTTGTTTTAAGGGAAACTGGATCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCA
1 AAAATTTGTTTAAAGAGAAACTGGATCAAGAGAGACAAAACTTAGTACCAAAAGAAACTGTCTCA
6954141 AGAGAGACAAAGAT
66 AGAGAGACAAAGAT
**
6954155 AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTACCAAAAGAAACTGTCTCA
1 AAAATTTGTTTAAAGAGAAACTGGATCAAGAGAGACAAAACTTAGTACCAAAAGAAACTGTCTCA
*
6954220 AGGGAGAC
66 AGAGAGAC
6954228 GAAATTTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
78 36 0.57
79 27 0.43
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (79 bp):
AAAATTTGTTTAAAGAGAAACTGGATCAAGAGAGACAAAACTTAGTACCAAAAGAAACTGTCTCA
AGAGAGACAAAGAT
Found at i:6954250 original size:216 final size:210
Alignment explanation
Indices: 6953662--6954315 Score: 704
Period size: 216 Copynumber: 3.1 Consensus size: 210
6953652 GGTTTTTTTG
* * ** * * *
6953662 TGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAACTTTGTTTCAAGGGAAACTCTCTCAAGAGAG
1 TGTTTCAAGGGAAACTGGATCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGAGAG
* * ** *
6953727 ACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAATTTA-TTTCAAGAGAAACTGTCT
65 ACAAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTACTACCAAAAGAAACTGTCT
* * * * * * * * *
6953791 TAAGAGAGACAAAACTTAGATCCAA-AAGAAACAGT-CTCAAGGGAGACGAAATTTGTTT-AATG
130 CAAGGGAGACGAAATTTA-TTTCAAGGA-AAACA-TATTC-A---A-A-G-ATTTTGTTTCAA-G
** *
6953853 TAAAACATAT-TC-A-A-AG----ATTT
184 GGAAAC-TATCTCAAGAGAGACAAAATT
** *
6953873 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGA
1 TGTTTCAAGGGAAACTGGATCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
* * *
6953938 CAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGATACAAAACTTACTTCCAAAAGAAACTGTCTC
66 CAAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTACTACCAAAAGAAACTGTCTC
*
6954003 AAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGGAATCTATCTC
131 AAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTATCTC
6954068 AAGAGAGACAAAATT
196 AAGAGAGACAAAATT
*
6954083 TGTTTTAAGGGAAACTGGATCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
1 TGTTTCAAGGGAAACTGGATCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
*
6954148 CAAAGATAAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTACCAAAAGAAAC
66 C------AAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTACTACCAAAAGAAAC
* *
6954213 TGTCTCAAGGGAGACGAAATTTGTTT-AATGTAAAACATATTCAAAGATTTTGTTTCAAGGGAAA
125 TGTCTCAAGGGAGACGAAATTTATTTCAA-GGAAAACATATTCAAAGATTTTGTTTCAAGGGAAA
* *
6954277 CTGTCTCAAGATAGACAAAATT
189 CTATCTCAAGAGAGACAAAATT
6954299 TGTTTCAAGGGAAACTG
1 TGTTTCAAGGGAAACTG
6954316 TAACACCCCC
Statistics
Matches: 387, Mismatches: 37, Indels: 33
0.85 0.08 0.07
Matches are distributed among these distances:
202 3 0.01
203 14 0.04
204 4 0.01
205 2 0.01
206 3 0.01
209 2 0.01
210 147 0.38
211 62 0.16
215 2 0.01
216 148 0.38
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.26
Consensus pattern (210 bp):
TGTTTCAAGGGAAACTGGATCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
CAAAATTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTACTACCAAAAGAAACTGTCTC
AAGGGAGACGAAATTTATTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTATCTC
AAGAGAGACAAAATT
Found at i:6954854 original size:18 final size:18
Alignment explanation
Indices: 6954827--6954864 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6954817 TCTTAGCATT
*
6954827 ATTATATATATTATTATC
1 ATTATATATATCATTATC
*
6954845 ATTATTTATATCATTATC
1 ATTATATATATCATTATC
6954863 AT
1 AT
6954865 CAAATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTATATATATCATTATC
Found at i:6955144 original size:23 final size:23
Alignment explanation
Indices: 6955118--6955175 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
6955108 CTCGTATAAA
* *
6955118 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
6955141 TGCACCGTAGTGCCACGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
*
6955164 TACACCGTAGTG
1 TGCACCGTAGTG
6955176 TCATATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (23 bp):
TGCACCGTAGTGCCACGTAGAAT
Found at i:6960073 original size:18 final size:18
Alignment explanation
Indices: 6960046--6960083 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6960036 TCTTAGCATT
*
6960046 ATTATATATATTATTATC
1 ATTATATATATCATTATC
*
6960064 ATTATTTATATCATTATC
1 ATTATATATATCATTATC
6960082 AT
1 AT
6960084 CAAATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTATATATATCATTATC
Found at i:6960215 original size:2 final size:2
Alignment explanation
Indices: 6960208--6960246 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
6960198 ATCAAAAATC
6960208 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6960247 TGTATTTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6960399 original size:23 final size:23
Alignment explanation
Indices: 6960369--6960414 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
6960359 CGAAGTACCG
6960369 CGTAGAATTACACCGTAGTGCCA
1 CGTAGAATTACACCGTAGTGCCA
*
6960392 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTACACCGTAGTGCCA
6960415 TATAATAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (23 bp):
CGTAGAATTACACCGTAGTGCCA
Found at i:6962914 original size:36 final size:37
Alignment explanation
Indices: 6962874--6962981 Score: 130
Period size: 36 Copynumber: 2.9 Consensus size: 37
6962864 GGATTTTACA
*
6962874 GAAACTGCCTCAAGAGAGACAAAATTTGTTTTAAG-G
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGAG
* * *
6962910 GAAACTATCTCAAGAGTGACAAAATTTGTTTCAAGAG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGAG
* * *
6962947 G-AACTGTCTAAACAGAGACAAAACTTTATTTTAAG
1 GAAACTGTCTCAAGAGAGACAAAA-TTTGTTTTAAG
6962982 TAATTTAGTC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
36 49 0.82
37 11 0.18
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (37 bp):
GAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGAG
Done.