Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8285662
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 30 of 35
Found at i:6964474 original size:95 final size:94
Alignment explanation
Indices: 6964281--6964543 Score: 312
Period size: 95 Copynumber: 2.7 Consensus size: 94
6964271 AACTAGCTGA
* ** * * *
6964281 ATCCATAAAGCCGGGGCGTTTGGCCAATTGCTCTAGAGGGACAACTTAATATCATTGTATATATA
1 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAAC-TCA-AGC-TT-TATGTATA
*
6964346 TTATAATCATCTTTATCAGGCTAGCTGAATATT
62 TTATAATCACCTTTATCAGGCTAGCTGAATATT
* * *
6964379 ATCCATAAAGCCGGGGCATTTAACCAATTACTCTAGAGGGATAACTCAAGCTTTATCGTACATTA
1 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTAT-GTATATTA
6964444 TAATCACCTTTATCAGGCTAGCTGAATATT
65 TAATCACCTTTATCAGGCTAGCTGAATATT
* * * * *
6964474 ATCCATAAAGTCGGGG-AGTTTAACTAATTGCTTTAGAGAGACAGCTCAAGCTTTATTGTATATA
1 ATCCATAAAGCCGGGGCA-TTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTA-TGTATAT-
6964538 TATAAT
63 TATAAT
6964544 ATTATAAAAT
Statistics
Matches: 143, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
94 4 0.03
95 88 0.62
96 9 0.06
97 2 0.01
98 40 0.28
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (94 bp):
ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATGTATATTAT
AATCACCTTTATCAGGCTAGCTGAATATT
Found at i:6968551 original size:28 final size:28
Alignment explanation
Indices: 6968518--6968581 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
6968508 AAACATACAT
*
6968518 AAAATAAAACAGAAAAAA-ATGAAGA-AA
1 AAAATAAAACA-AAAAAATAAGAAGACAA
*
6968545 AAGAATAAAATAAAAAAATAAGAAGACAA
1 AA-AATAAAACAAAAAAATAAGAAGACAA
6968574 AAAATAAA
1 AAAATAAA
6968582 GCTAAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 8 0.25
28 20 0.62
29 4 0.12
ACGTcount: A:0.78, C:0.03, G:0.09, T:0.09
Consensus pattern (28 bp):
AAAATAAAACAAAAAAATAAGAAGACAA
Found at i:6971046 original size:37 final size:37
Alignment explanation
Indices: 6971004--6971086 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
6970994 CTTAAACCCG
6971004 AACCGACCCGAC-CTGACCCAAATATCACACTTAAAAA
1 AACCGACCCGACTC-GACCCAAATATCACACTTAAAAA
** *
6971041 AACCGACCCGACTCGACCTGAATATCACGCTTAAAAA
1 AACCGACCCGACTCGACCCAAATATCACACTTAAAAA
*
6971078 ACCCGACCC
1 AACCGACCC
6971087 AAACAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 40 0.98
38 1 0.02
ACGTcount: A:0.39, C:0.37, G:0.11, T:0.13
Consensus pattern (37 bp):
AACCGACCCGACTCGACCCAAATATCACACTTAAAAA
Found at i:6971314 original size:37 final size:36
Alignment explanation
Indices: 6971263--6971352 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 36
6971253 CCGAACCCAA
* *
6971263 CCGACCCGAACCGACCCGAATATCA-CACTTAAAAAAT
1 CCGACCCGACCCGACCCGAATAT-ATCAATT-AAAAAT
* *
6971300 CCGACCCGACCCGACCCGAATATATGAATTAGAAAT
1 CCGACCCGACCCGACCCGAATATATCAATTAAAAAT
*
6971336 CCAACCCGACCCGACCC
1 CCGACCCGACCCGACCC
6971353 AAAATAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
36 22 0.47
37 25 0.53
ACGTcount: A:0.36, C:0.39, G:0.13, T:0.12
Consensus pattern (36 bp):
CCGACCCGACCCGACCCGAATATATCAATTAAAAAT
Found at i:6982591 original size:17 final size:18
Alignment explanation
Indices: 6982560--6982593 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6982550 TAGTTAAATA
6982560 TTGTGAATAAAGTAGAGT
1 TTGTGAATAAAGTAGAGT
*
6982578 TTGTG-ATAATGTAGAG
1 TTGTGAATAAAGTAGAG
6982594 ATAATGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (18 bp):
TTGTGAATAAAGTAGAGT
Found at i:6985762 original size:31 final size:31
Alignment explanation
Indices: 6985721--6985805 Score: 163
Period size: 31 Copynumber: 2.8 Consensus size: 31
6985711 AGGGTCGAGG
6985721 GTTTA-CTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
6985751 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
6985782 GTTTACCTATGTTCTTCGGGACAT
1 GTTTACCTATGTTCTTCGGGACAT
6985806 TTAACAGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 5 0.09
31 49 0.91
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:6989487 original size:64 final size:64
Alignment explanation
Indices: 6989376--6989534 Score: 178
Period size: 64 Copynumber: 2.5 Consensus size: 64
6989366 TTGAAGGTGT
** *** *
6989376 ATCGATGCATTGGTAGTGCATCGATGCACT-CTTTTAAAATAAAAACATCGAATGCAATTCATTC
1 ATCGATGCATAAGTAGTGCATCGATGCA-TACCAGTAAAATAAAAACATCGAATGCAATTCATGC
* * *
6989440 ATCGATGCATAAGTAGTGCATCGATGCATACCAGTAATAAT-ACAACATCGAATGCATTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATACCAGTAA-AATAAAAACATCGAATGCAATTCATGC
* * *
6989504 ACCGATGCATCATTAGTGCATCGATGCATAC
1 ATCGATGCATAAGTAGTGCATCGATGCATAC
6989535 TTTCATTGAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 1 0.01
64 77 0.95
65 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATACCAGTAAAATAAAAACATCGAATGCAATTCATGC
Found at i:6990221 original size:31 final size:31
Alignment explanation
Indices: 6990183--6990276 Score: 143
Period size: 31 Copynumber: 3.0 Consensus size: 31
6990173 AGGGTCGAGG
*
6990183 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACA
*
6990214 GTTTACCTATGTTCTTCGGGACATATAGACA
1 GTTTACCTATGTTCTTCGGGACATATGGACA
* * *
6990245 GTTTACCTAGGTTCTTCGGAACCTATGGACA
1 GTTTACCTATGTTCTTCGGGACATATGGACA
6990276 G
1 G
6990277 ATGCCGAGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACA
Found at i:6990316 original size:30 final size:30
Alignment explanation
Indices: 6990280--6990336 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
6990270 TGGACAGATG
6990280 CCGAGGATCTTTATGACCTTTGGATAGTTA
1 CCGAGGATCTTTATGACCTTTGGATAGTTA
6990310 CCGAGGATCTTTATGACCTTTGGATAG
1 CCGAGGATCTTTATGACCTTTGGATAG
6990337 GTCCTTCGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (30 bp):
CCGAGGATCTTTATGACCTTTGGATAGTTA
Found at i:7001256 original size:13 final size:13
Alignment explanation
Indices: 7001238--7001274 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7001228 GTCATAACCC
7001238 GACCCGACCCGTT
1 GACCCGACCCGTT
**
7001251 GACCCGACCAATT
1 GACCCGACCCGTT
7001264 GACCCGACCCG
1 GACCCGACCCG
7001275 ACCGTTGACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.22, C:0.46, G:0.22, T:0.11
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:7001257 original size:18 final size:17
Alignment explanation
Indices: 7001234--7001286 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
7001224 ACCGGTCATA
7001234 ACCCGACCCGACCCGTTG
1 ACCCGACCCGA-CCGTTG
*
7001252 ACCCGA-CC-A--ATTG
1 ACCCGACCCGACCGTTG
7001265 ACCCGACCCGACCGTTG
1 ACCCGACCCGACCGTTG
7001282 ACCCG
1 ACCCG
7001287 TTGACCGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 9 0.31
14 2 0.07
15 1 0.03
16 1 0.03
17 10 0.34
18 6 0.21
ACGTcount: A:0.21, C:0.47, G:0.21, T:0.11
Consensus pattern (17 bp):
ACCCGACCCGACCGTTG
Found at i:7003637 original size:24 final size:24
Alignment explanation
Indices: 7003610--7003712 Score: 102
Period size: 24 Copynumber: 4.3 Consensus size: 24
7003600 TCAAATTTGA
*
7003610 ATTCTGTTATGATACCTGACTTGG
1 ATTCTGTTATGATACTTGACTTGG
* *
7003634 ATTCTGATATGATA-TTGACATGG
1 ATTCTGTTATGATACTTGACTTGG
* * *
7003657 ATTCTGATT-GGATACATGACCTGG
1 ATTCTG-TTATGATACTTGACTTGG
* *
7003681 ATTCTGATATGATACTTGACTTGA
1 ATTCTGTTATGATACTTGACTTGG
*
7003705 ATTATGTT
1 ATTCTGTT
7003713 TTATTTTTGA
Statistics
Matches: 62, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
23 18 0.29
24 44 0.71
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (24 bp):
ATTCTGTTATGATACTTGACTTGG
Found at i:7004843 original size:36 final size:36
Alignment explanation
Indices: 7004774--7004853 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
7004764 TGTTCATTTC
* * * *
7004774 TAAAATATTAAAATTTTAGAAGTTTATCCCTTAACA
1 TAAAATTTTAAAATTTTAAAAATTCATCCCTTAACA
* * *
7004810 TAAAATTTTAAAATTTTAAAAATTCGTCTCTTAATA
1 TAAAATTTTAAAATTTTAAAAATTCATCCCTTAACA
7004846 TAAAATTT
1 TAAAATTT
7004854 ACGTTCTCAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (36 bp):
TAAAATTTTAAAATTTTAAAAATTCATCCCTTAACA
Found at i:7012285 original size:25 final size:24
Alignment explanation
Indices: 7012242--7012288 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
7012232 TCACAAGGGG
* *
7012242 CAAGGAAACAAGTATGATGATGGC
1 CAAGGAAAAAAGTAGGATGATGGC
7012266 CAAGGAAAAAAAGTAGGATGATG
1 CAAGG-AAAAAAGTAGGATGATG
7012289 ATGACTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.15
Consensus pattern (24 bp):
CAAGGAAAAAAGTAGGATGATGGC
Found at i:7017863 original size:15 final size:15
Alignment explanation
Indices: 7017843--7017872 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7017833 ATAAAATATG
*
7017843 ATTAATATTATTTAT
1 ATTAATATTAATTAT
7017858 ATTAATATTAATTAT
1 ATTAATATTAATTAT
7017873 TATATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTAATATTAATTAT
Found at i:7018694 original size:21 final size:19
Alignment explanation
Indices: 7018648--7018695 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
7018638 ATAAAGTTCC
7018648 AATAATAACAAAACCAATA
1 AATAATAACAAAACCAATA
* *
7018667 AAAAATAACAAAATCGATATA
1 AATAATAACAAAA-CCA-ATA
7018688 AATAATAA
1 AATAATAA
7018696 TATTCAGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.50
20 2 0.08
21 10 0.42
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.19
Consensus pattern (19 bp):
AATAATAACAAAACCAATA
Found at i:7024294 original size:21 final size:21
Alignment explanation
Indices: 7024265--7024317 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7024255 ATTTTGACTA
7024265 TCGCATTGCGA-TTTCCTAAAT
1 TCGCATTGCGATTTTCCT-AAT
*
7024286 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCTAAT
*
7024307 TCGCAATGCGA
1 TCGCATTGCGA
7024318 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCTAAT
Found at i:7024950 original size:20 final size:20
Alignment explanation
Indices: 7024925--7024973 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7024915 CAACGAGTGA
7024925 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
7024945 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
7024965 ATCGCAACG
1 ATCGCAACG
7024974 AGAGAATCGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:7025027 original size:20 final size:20
Alignment explanation
Indices: 7025002--7025045 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7024992 TTCTTGCATT
7025002 CGATAGTCAAATTCGCGTTG
1 CGATAGTCAAATTCGCGTTG
** *
7025022 CGATAGTCATTTTCGTGTTG
1 CGATAGTCAAATTCGCGTTG
7025042 CGAT
1 CGAT
7025046 TTTCATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (20 bp):
CGATAGTCAAATTCGCGTTG
Found at i:7025051 original size:20 final size:21
Alignment explanation
Indices: 7025013--7025068 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
7025003 GATAGTCAAA
* **
7025013 TTCGCGTTGCGATAGTCA-TT
1 TTCGTGTTGCGATTTTCATTT
7025033 TTCGTGTTGCGATTTTCATTT
1 TTCGTGTTGCGATTTTCATTT
7025054 TTCGTGTTGCGATTT
1 TTCGTGTTGCGATTT
7025069 AAAGTTTCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.50
Consensus pattern (21 bp):
TTCGTGTTGCGATTTTCATTT
Found at i:7026940 original size:20 final size:20
Alignment explanation
Indices: 7026915--7027016 Score: 135
Period size: 20 Copynumber: 5.4 Consensus size: 20
7026905 AAAATAGTTT
7026915 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
7026935 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
7026951 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
7026969 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
**
7026989 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
7027009 ACTATCGC
1 ACTATCGC
7027017 GAGAATCGAA
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
14 7 0.10
16 4 0.06
17 4 0.06
18 4 0.06
20 53 0.74
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:7027085 original size:20 final size:20
Alignment explanation
Indices: 7027060--7027106 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7027050 GATTCTCTCG
7027060 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
7027080 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
7027100 TTGCGAT
1 TTGCGAT
7027107 TTTGTTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:7027175 original size:20 final size:20
Alignment explanation
Indices: 7027147--7027190 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7027137 GATTCTCTCG
*
7027147 TTGCGATAGTCAAATTCGCA
1 TTGCAATAGTCAAATTCGCA
**
7027167 TTGCAATAGTCATTTTCGCA
1 TTGCAATAGTCAAATTCGCA
7027187 TTGC
1 TTGC
7027191 GATTTTCGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (20 bp):
TTGCAATAGTCAAATTCGCA
Found at i:7027197 original size:14 final size:14
Alignment explanation
Indices: 7027178--7027210 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7027168 TGCAATAGTC
7027178 ATTTTCGCATTGCG
1 ATTTTCGCATTGCG
*
7027192 ATTTTCGCGTTGCG
1 ATTTTCGCATTGCG
7027206 ATTTT
1 ATTTT
7027211 AAGTTTCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.48
Consensus pattern (14 bp):
ATTTTCGCATTGCG
Found at i:7027209 original size:87 final size:87
Alignment explanation
Indices: 7027043--7027210 Score: 284
Period size: 87 Copynumber: 1.9 Consensus size: 87
7027033 AATGAAAATT
* *
7027043 GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCGTTGCGATT
1 GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCAATAGTCATTTTCGCATTGCGATT
* *
7027108 TTGTTGTTGTGATTTTCATTTC
66 TTGTCGTTGCGATTTTCATTTC
7027130 GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCAATAGTCATTTTCGCATTGCGATT
1 GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCAATAGTCATTTTCGCATTGCGATT
7027195 TTCG-CGTTGCGATTTT
66 TT-GTCGTTGCGATTTT
7027211 AAGTTTCAGA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 75 0.99
88 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (87 bp):
GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCAATAGTCATTTTCGCATTGCGATT
TTGTCGTTGCGATTTTCATTTC
Found at i:7027721 original size:18 final size:19
Alignment explanation
Indices: 7027682--7027723 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
7027672 CTCACCTGTC
7027682 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
7027703 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
7027721 ATC
1 ATC
7027724 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:7029298 original size:33 final size:34
Alignment explanation
Indices: 7029236--7029306 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
7029226 ACTAATTTCG
*
7029236 CGTTGCGATTTTCATTTTCGCATTACGATTCACT
1 CGTTGCAATTTTCATTTTCGCATTACGATTCACT
* *
7029270 CGTTGCAATTTTCA-TTTCGCATTGCGATTCTCT
1 CGTTGCAATTTTCATTTTCGCATTACGATTCACT
7029303 CGTT
1 CGTT
7029307 ACGATAGTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 21 0.62
34 13 0.38
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.45
Consensus pattern (34 bp):
CGTTGCAATTTTCATTTTCGCATTACGATTCACT
Found at i:7029318 original size:33 final size:33
Alignment explanation
Indices: 7029251--7029331 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
7029241 CGATTTTCAT
* * **
7029251 TTTCGCATTACGATTCACTCGTTGCAATTTTCA
1 TTTCGCATTGCGATTCACTCGTTACAATAGTCA
* *
7029284 TTTCGCATTGCGATTCTCTCGTTACGATAGTCA
1 TTTCGCATTGCGATTCACTCGTTACAATAGTCA
*
7029317 TTTCCGCGTTGCGAT
1 TTT-CGCATTGCGAT
7029332 AGTCAATTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 30 0.75
34 10 0.25
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (33 bp):
TTTCGCATTGCGATTCACTCGTTACAATAGTCA
Found at i:7029331 original size:20 final size:20
Alignment explanation
Indices: 7029303--7029391 Score: 108
Period size: 20 Copynumber: 4.5 Consensus size: 20
7029293 GCGATTCTCT
*
7029303 CGTTACGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
7029323 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
* **
7029343 CATTGCGATAGTCATTTTTG
1 CGTTGCGATAGTCATTTCCG
*
7029363 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
7029383 CGTTGCGAT
1 CGTTGCGAT
7029392 TTTCGCGTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 56 0.97
21 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:7029398 original size:14 final size:14
Alignment explanation
Indices: 7029379--7029433 Score: 101
Period size: 14 Copynumber: 3.9 Consensus size: 14
7029369 GATAGTCATA
7029379 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
*
7029393 TTCGCGTTACGATT
1 TTCGCGTTGCGATT
7029407 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
7029421 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
7029434 AGTCAAATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.09, C:0.22, G:0.27, T:0.42
Consensus pattern (14 bp):
TTCGCGTTGCGATT
Found at i:7031853 original size:24 final size:23
Alignment explanation
Indices: 7031815--7031868 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
7031805 CTGAAAAATC
7031815 ATCAAATCCGAGTATTGACCAAG
1 ATCAAATCCGAGTATTGACCAAG
*
7031838 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAA-TCCGAGTATTGACCAAG
7031862 ATCAAAT
1 ATCAAAT
7031869 TTCGAATACT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 7 0.24
24 22 0.76
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (23 bp):
ATCAAATCCGAGTATTGACCAAG
Found at i:7031881 original size:24 final size:24
Alignment explanation
Indices: 7031815--7031881 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
7031805 CTGAAAAATC
* *
7031815 ATCAAA-TCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
7031838 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
7031862 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
7031882 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 6 0.16
24 31 0.84
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:7032815 original size:41 final size:40
Alignment explanation
Indices: 7032723--7032831 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 40
7032713 GTCAGAATCT
* **
7032723 CGTTGCGATTTACAG-ATTCACATTGCGATTTACGTATTCG
1 CGTTGCGATTTAC-GTATTCGCATTGCGATTTACAAATTCG
* * *
7032763 CATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
1 CGTTGCGATTTACGTATTCGCATTGCGA-TTTACAAATTCG
7032804 CGTTGCGATTTACGTATTCGCATTGCGA
1 CGTTGCGATTTACGTATTCGCATTGCGA
7032832 ATTAGGAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 23 0.39
41 35 0.59
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (40 bp):
CGTTGCGATTTACGTATTCGCATTGCGATTTACAAATTCG
Found at i:7032824 original size:20 final size:20
Alignment explanation
Indices: 7032725--7032831 Score: 135
Period size: 20 Copynumber: 5.3 Consensus size: 20
7032715 CAGAATCTCG
*
7032725 TTGCGATTTACAG-ATTCACA
1 TTGCGATTTAC-GTATTCGCA
7032745 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
*
7032765 TTGCGATTTACGTAATCGCA
1 TTGCGATTTACGTATTCGCA
* ** *
7032785 TTGCGATTTTCCAAATTCGCG
1 TTGCGA-TTTACGTATTCGCA
7032806 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
7032826 TTGCGA
1 TTGCGA
7032832 ATTAGGAAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 1 0.01
20 58 0.78
21 15 0.20
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (20 bp):
TTGCGATTTACGTATTCGCA
Found at i:7032854 original size:21 final size:21
Alignment explanation
Indices: 7032828--7032873 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7032818 TATTCGCATT
7032828 GCGAATTAGGAAAATTGCAAC
1 GCGAATTAGGAAAATTGCAAC
* * *
7032849 GCGAATTTGGGAAATTGCAAT
1 GCGAATTAGGAAAATTGCAAC
7032870 GCGA
1 GCGA
7032874 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (21 bp):
GCGAATTAGGAAAATTGCAAC
Found at i:7032945 original size:19 final size:19
Alignment explanation
Indices: 7032921--7032962 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7032911 CGATACCGAA
*
7032921 GATCGCGTTGTGAATTATC
1 GATCGCGTTGCGAATTATC
7032940 GATCGCGTTGCGAATTATC
1 GATCGCGTTGCGAATTATC
7032959 GATC
1 GATC
7032963 ACATTGCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.33
Consensus pattern (19 bp):
GATCGCGTTGCGAATTATC
Found at i:7032969 original size:19 final size:19
Alignment explanation
Indices: 7032932--7032971 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7032922 ATCGCGTTGT
* *
7032932 GAATTATCGATCGCGTTGC
1 GAATTATCGATCACATTGC
7032951 GAATTATCGATCACATTGC
1 GAATTATCGATCACATTGC
7032970 GA
1 GA
7032972 TTTAGTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (19 bp):
GAATTATCGATCACATTGC
Found at i:7033260 original size:19 final size:19
Alignment explanation
Indices: 7033236--7033297 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
7033226 AAATTTTAAA
7033236 AAATAATAATTGAATGACT
1 AAATAATAATTGAATGACT
7033255 AAATAA-AATT--A--A--
1 AAATAATAATTGAATGACT
7033267 AAATAATAATTGAATGACT
1 AAATAATAATTGAATGACT
7033286 AAATATATAATT
1 AAATA-ATAATT
7033298 TAATTTTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 15
0.70 0.00 0.30
Matches are distributed among these distances:
12 6 0.17
13 4 0.11
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 4 0.11
19 11 0.31
20 6 0.17
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (19 bp):
AAATAATAATTGAATGACT
Found at i:7033261 original size:26 final size:27
Alignment explanation
Indices: 7033234--7033292 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 27
7033224 TAAAATTTTA
7033234 AAAAATAATAATTGAATGACTAAATAAAATT
1 AAAAATAATAATTGAATGACTAAAT---A-T
7033265 AAAAATAATAATTGAATGACTAAATAT
1 AAAAATAATAATTGAATGACTAAATAT
7033292 A
1 A
7033293 TAATTTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 2 0.07
28 1 0.04
31 25 0.89
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAAATAATAATTGAATGACTAAATAT
Found at i:7035284 original size:24 final size:24
Alignment explanation
Indices: 7035257--7035307 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7035247 GACGAAATTG
7035257 TCGTCCTAGTTTACGATTTTCCCT
1 TCGTCCTAGTTTACGATTTTCCCT
7035281 TCGTCCTAGTTTACGATTTTCCCT
1 TCGTCCTAGTTTACGATTTTCCCT
7035305 TCG
1 TCG
7035308 ACGAAAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.29, G:0.14, T:0.45
Consensus pattern (24 bp):
TCGTCCTAGTTTACGATTTTCCCT
Found at i:7043839 original size:185 final size:185
Alignment explanation
Indices: 7043527--7043896 Score: 704
Period size: 185 Copynumber: 2.0 Consensus size: 185
7043517 CAACAATAAT
* *
7043527 CACTCAAATCAAATCTGAAGCAGAAAAAAACCCCCTCAAATTCTTGAACCTAGGGGATCGAAAAC
1 CACTCAAATCAAATCTGAAGCAGAAAAAAAACCCATCAAATTCTTGAACCTAGGGGATCGAAAAC
*
7043592 CAGCGATCAATTTACAGCAGCAAACATTAAAGGAGTATGAGAGCAAGAGAGAGAGTTAGAAACCT
66 CAGCGATCAATTTACAGCAGCAAAAATTAAAGGAGTATGAGAGCAAGAGAGAGAGTTAGAAACCT
7043657 TGGTTTAGCTTCCAGTTGCAGTAAAACTTGGAAACCCACCAAATGAGAGTAAGCG
131 TGGTTTAGCTTCCAGTTGCAGTAAAACTTGGAAACCCACCAAATGAGAGTAAGCG
*
7043712 CACTCAAATCAAATCTGAAGCAGAAAAAAAACCCATCGAATTCTTGAACCTAGGGGATCGAAAAC
1 CACTCAAATCAAATCTGAAGCAGAAAAAAAACCCATCAAATTCTTGAACCTAGGGGATCGAAAAC
7043777 CAGCGATCAATTTACAGCAGCAAAAATTAAAGGAGTATGAGAGCAAGAGAGAGAGTTAGAAACCT
66 CAGCGATCAATTTACAGCAGCAAAAATTAAAGGAGTATGAGAGCAAGAGAGAGAGTTAGAAACCT
7043842 TGGTTTAGCTTCCAGTTGCAGTAAAACTTGGAAACCCACCAAATGAGAGTAAGCG
131 TGGTTTAGCTTCCAGTTGCAGTAAAACTTGGAAACCCACCAAATGAGAGTAAGCG
7043897 AAAGAGTGAC
Statistics
Matches: 181, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 181 1.00
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.19
Consensus pattern (185 bp):
CACTCAAATCAAATCTGAAGCAGAAAAAAAACCCATCAAATTCTTGAACCTAGGGGATCGAAAAC
CAGCGATCAATTTACAGCAGCAAAAATTAAAGGAGTATGAGAGCAAGAGAGAGAGTTAGAAACCT
TGGTTTAGCTTCCAGTTGCAGTAAAACTTGGAAACCCACCAAATGAGAGTAAGCG
Found at i:7049793 original size:2 final size:2
Alignment explanation
Indices: 7049786--7049812 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7049776 CATCTTACTT
7049786 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7049813 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7069348 original size:22 final size:22
Alignment explanation
Indices: 7069320--7069371 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
7069310 ACATGTTAAG
7069320 TAAATAAAATAATTTTTTTATT
1 TAAATAAAATAATTTTTTTATT
7069342 TAAATAAAATAATTTTTTTATT
1 TAAATAAAATAATTTTTTTATT
7069364 TAAA-AAAA
1 TAAATAAAA
7069372 CTTAAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAATAAAATAATTTTTTTATT
Found at i:7069394 original size:22 final size:23
Alignment explanation
Indices: 7069359--7069405 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
7069349 AATAATTTTT
**
7069359 TTATTTAAAAAAACTTAAAATTA
1 TTATTTAAAAAAACCCAAAATTA
7069382 TTATTT-AAAAAACCCAAAATTA
1 TTATTTAAAAAAACCCAAAATTA
7069404 TT
1 TT
7069406 TGAAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (23 bp):
TTATTTAAAAAAACCCAAAATTA
Found at i:7070945 original size:18 final size:17
Alignment explanation
Indices: 7070924--7070962 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
7070914 TTCGTCACGT
7070924 AGGACTCCTACGTCCCGA
1 AGGACT-CTACGTCCCGA
7070942 AGGA--CTACGTCCCGA
1 AGGACTCTACGTCCCGA
7070957 AGGACT
1 AGGACT
7070963 ATTATACCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
15 15 0.79
18 4 0.21
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.15
Consensus pattern (17 bp):
AGGACTCTACGTCCCGA
Found at i:7070951 original size:15 final size:15
Alignment explanation
Indices: 7070931--7070963 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7070921 CGTAGGACTC
7070931 CTACGTCCCGAAGGA
1 CTACGTCCCGAAGGA
7070946 CTACGTCCCGAAGGA
1 CTACGTCCCGAAGGA
7070961 CTA
1 CTA
7070964 TTATACCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.33, G:0.24, T:0.15
Consensus pattern (15 bp):
CTACGTCCCGAAGGA
Found at i:7071090 original size:29 final size:29
Alignment explanation
Indices: 7071048--7071117 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
7071038 TTTCATATGT
7071048 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
7071076 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
7071105 TCATGTAGCTCAT
1 TCATGTAGCTCAT
7071118 ATCACTTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 7 0.17
29 34 0.83
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:7071142 original size:23 final size:26
Alignment explanation
Indices: 7071104--7071156 Score: 76
Period size: 23 Copynumber: 2.2 Consensus size: 26
7071094 TTCTCTTGTG
7071104 ATCATGTAGCTCATATCAC-T-TCAT
1 ATCATGTAGCTCATATCACATATCAT
*
7071128 ATCATGT-TCTCATATCACATATCAT
1 ATCATGTAGCTCATATCACATATCAT
7071153 ATCA
1 ATCA
7071157 CATGAACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 10 0.38
24 8 0.31
25 8 0.31
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
ATCATGTAGCTCATATCACATATCAT
Found at i:7071542 original size:64 final size:63
Alignment explanation
Indices: 7071468--7071691 Score: 245
Period size: 64 Copynumber: 3.5 Consensus size: 63
7071458 TAATGAAGGT
* * ** * *
7071468 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAGTATTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATTATTATTA-TGGG
* **
7071532 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATT-ATTATT-ATGGG
* ***
7071596 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTATTTATT-TTAAAAG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTA-TTATTATTATGGG
** *
7071659 AGTGCATCGATGCACTACCAATGCATCGGTGCA
1 A-TGCATCGATGCACTACTTATGCATCGATGCA
7071692 CATTCAAACA
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
63 4 0.03
64 127 0.93
65 4 0.03
66 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (63 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATTATTATTATGGG
Found at i:7075715 original size:15 final size:15
Alignment explanation
Indices: 7075695--7075723 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7075685 GACTCCTACA
7075695 TCCCGAAGGACTATG
1 TCCCGAAGGACTATG
7075710 TCCCGAAGGACTAT
1 TCCCGAAGGACTAT
7075724 TATACCCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (15 bp):
TCCCGAAGGACTATG
Found at i:7075849 original size:29 final size:29
Alignment explanation
Indices: 7075807--7075880 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
7075797 TTTCATATGT
7075807 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
7075835 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
7075864 TCATGTAGCTCATGTCA
1 TCATGTAGCTCATGTCA
7075881 CTTCATATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 7 0.16
29 38 0.84
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:7076335 original size:64 final size:65
Alignment explanation
Indices: 7076227--7076450 Score: 249
Period size: 64 Copynumber: 3.5 Consensus size: 65
7076217 TAATGAAGGT
* * ** * *
7076227 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAGT-ATTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAGTCATTATTAATGGG
* ** *
7076291 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAGTCATTATTAATGGG
* * * **
7076355 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAGTCATTATTAATGGG
** *
7076418 AGTGCATCGATGCACTACCAATGCATCGGTGCA
1 A-TGCATCGATGCACTACTTATGCATCGATGCA
7076451 CATTCAAACA
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
63 3 0.02
64 130 0.94
65 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (65 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAGTCATTATTAATGGG
Found at i:7076510 original size:21 final size:21
Alignment explanation
Indices: 7076484--7076537 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
7076474 AACCTTGATG
7076484 CATCGATGCACTATGAATGTA
1 CATCGATGCACTATGAATGTA
7076505 CATCGATGCACTATGAATGTA
1 CATCGATGCACTATGAATGTA
7076526 CATCGATGCACT
1 CATCGATGCACT
7076538 CTGGACAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (21 bp):
CATCGATGCACTATGAATGTA
Found at i:7077699 original size:216 final size:215
Alignment explanation
Indices: 7077246--7077919 Score: 1032
Period size: 216 Copynumber: 3.1 Consensus size: 215
7077236 ATGTTACAGG
*
7077246 TCGGGTCGGGTCGGGTTCGGGTTTAGGGTG-AAAAAACAGGACTGACCCGAAAATATATATAATT
1 TCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAACA-GACCGACCCGAAAATATATATAATT
**
7077310 CATGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTCG
65 CGGGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTCG
* * *
7077375 GGTCGGTTGGATTTCTAATTCATATATTCGGGTCGGGTCGTATGAAACTTTATTTTGTCCGGGTC
130 GGTC----GGATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCTGGTC
7077440 GGGTCGGGTTTTTTAAGTGTGATAT
191 GGGTCGGGTTTTTTAAGTGTGATAT
7077465 TCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAACCAGACCGACCCGAAAATATATATAATT
1 TCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAA-CAGACCGACCCGAAAATATATATAATT
* *
7077530 CGGGTCGGGTCGTATTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCG
65 CGGGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTCG
*
7077595 GGTCGGATTTCTAATTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCTGGTCGGGT
130 GGTCGGATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCTGGTCGGGT
7077660 CGGGTTTTTTAAGTGTGATAT
195 CGGGTTTTTTAAGTGTGATAT
*
7077681 CCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAA-ATTGGACCGACCCGAAAATATATATAT
1 TCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAACA---GACCGACCCG-AAA-ATATATAT
*
7077745 AATTCGGGTCGGGTCGGATT-AGTCACTTTTTTTATTAAATAAAAATATTTTTTTATTATTTCGG
61 AATTCGGGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGG
*
7077809 GTCGGGTCGTGTCGGATTTCTAATTCATATATTCGGGTTGGGTCGGATGAAACTTTATTTTGTT-
126 GTC--G--G-GTCGGATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTC
**
7077873 TGGGTCGGGTCATGTTTTTTAAGTGTGATAT
186 T-GGTCGGGTCGGGTTTTTTAAGTGTGATAT
*
7077904 TCGGGTCGAGTCGGGT
1 TCGGGTCGGGTCGGGT
7077920 CAGGTTTTTT
Statistics
Matches: 423, Mismatches: 19, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
214 1 0.00
216 114 0.27
217 10 0.02
218 48 0.11
219 57 0.13
220 96 0.23
221 2 0.00
222 2 0.00
223 93 0.22
ACGTcount: A:0.23, C:0.12, G:0.27, T:0.37
Consensus pattern (215 bp):
TCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAACAGACCGACCCGAAAATATATATAATTC
GGGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTCGG
GTCGGATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCTGGTCGGGTC
GGGTTTTTTAAGTGTGATAT
Found at i:7077955 original size:38 final size:37
Alignment explanation
Indices: 7077875--7077963 Score: 117
Period size: 38 Copynumber: 2.4 Consensus size: 37
7077865 ATTTTGTTTG
* **
7077875 GGTCGGGTCATG-TTTTTTAAGTGTGATATTCGGGTC
1 GGTCGGGTCAGGTTTTTTTAAGTGTGATATTCGAATC
7077911 GAGTCGGGTCAGGTTTTTTTAAGTGTGATATTCGAATC
1 G-GTCGGGTCAGGTTTTTTTAAGTGTGATATTCGAATC
*
7077949 AGGTCGGGTCGGGTT
1 -GGTCGGGTCAGGTT
7077964 CGGGTTTAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
36 1 0.02
37 10 0.22
38 34 0.74
39 1 0.02
ACGTcount: A:0.16, C:0.11, G:0.35, T:0.38
Consensus pattern (37 bp):
GGTCGGGTCAGGTTTTTTTAAGTGTGATATTCGAATC
Found at i:7078553 original size:18 final size:18
Alignment explanation
Indices: 7078504--7078553 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
7078494 TATTGAATTG
7078504 GATTCCAATTCC-T-ACA
1 GATTCCAATTCCTTCACA
**
7078520 GATTCCAATTAATTCACA
1 GATTCCAATTCCTTCACA
7078538 GATTCCAATTCCTTCA
1 GATTCCAATTCCTTCA
7078554 TAAATATTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 10 0.36
17 1 0.04
18 17 0.61
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Found at i:7082945 original size:27 final size:27
Alignment explanation
Indices: 7082915--7083025 Score: 204
Period size: 27 Copynumber: 4.1 Consensus size: 27
7082905 CAGCACGTGA
*
7082915 TCCAGCACTACCTCGTGTTCCACCGCT
1 TCCAGCACTTCCTCGTGTTCCACCGCT
7082942 TCCAGCACTTCCTCGTGTTCCACCGCT
1 TCCAGCACTTCCTCGTGTTCCACCGCT
7082969 TCCAGCACTTCCTCGTGTTCCACCGCT
1 TCCAGCACTTCCTCGTGTTCCACCGCT
*
7082996 TCCAGCACTTCCTCATGTTCCACCGCT
1 TCCAGCACTTCCTCGTGTTCCACCGCT
7083023 TCC
1 TCC
7083026 TCGATTTGCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.13, C:0.45, G:0.14, T:0.29
Consensus pattern (27 bp):
TCCAGCACTTCCTCGTGTTCCACCGCT
Found at i:7089496 original size:14 final size:15
Alignment explanation
Indices: 7089477--7089513 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7089467 CTCAAAGTAA
7089477 AAATGAGATTGA-AT
1 AAATGAGATTGATAT
*
7089491 AAATGA-AGTGATAT
1 AAATGAGATTGATAT
7089505 AAATGAGAT
1 AAATGAGAT
7089514 GGGAAATTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
13 4 0.21
14 14 0.74
15 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (15 bp):
AAATGAGATTGATAT
Found at i:7093772 original size:169 final size:170
Alignment explanation
Indices: 7093493--7093831 Score: 671
Period size: 169 Copynumber: 2.0 Consensus size: 170
7093483 GTGATTATAT
7093493 CCATCGGAAGTTTAGACATTTTTTAGTTTGTTTGAGGGGAAATGAGGGAATCGTTACTTTTGAGG
1 CCATCGGAAGTTTAGACATTTTTTAGTTTGTTTGAGGGGAAATGAGGGAATCGTTACTTTTGAGG
7093558 AGGAAGTGTGAGAGTGCGTGAAAGCGTGTCTATCAGTGAGAGCATAGGGTTACCTACTTTAAAGG
66 AGGAAGTGTGAGAGTGCGTGAAAGCGTGTCTATCAGTGAGAGCATAGGGTTACCTACTTTAAAGG
7093623 TTAAAGGCT-AAACGTGTCGCACTGGAAATATCCATTAAA
131 TTAAAGGCTAAAACGTGTCGCACTGGAAATATCCATTAAA
7093662 CCATCGGAAGTTTAGACATTTTTTAGTTTGTTTGAGGGGAAATGAGGGAATCGTTACTTTTGAGG
1 CCATCGGAAGTTTAGACATTTTTTAGTTTGTTTGAGGGGAAATGAGGGAATCGTTACTTTTGAGG
7093727 AGGAAGTGTGAGAGTGCGTGAAAGCGTGTCTATCAGTGAGAGCATAGGGTTACCTACTTTAAAGG
66 AGGAAGTGTGAGAGTGCGTGAAAGCGTGTCTATCAGTGAGAGCATAGGGTTACCTACTTTAAAGG
7093792 TTAAAGGCTAAAACGTGTCGCACTGGAAATATCCATTAAA
131 TTAAAGGCTAAAACGTGTCGCACTGGAAATATCCATTAAA
7093832 ATAAGGATTA
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
169 139 0.82
170 30 0.18
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.29
Consensus pattern (170 bp):
CCATCGGAAGTTTAGACATTTTTTAGTTTGTTTGAGGGGAAATGAGGGAATCGTTACTTTTGAGG
AGGAAGTGTGAGAGTGCGTGAAAGCGTGTCTATCAGTGAGAGCATAGGGTTACCTACTTTAAAGG
TTAAAGGCTAAAACGTGTCGCACTGGAAATATCCATTAAA
Found at i:7094377 original size:2 final size:2
Alignment explanation
Indices: 7094370--7094422 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
7094360 ATTATAATTG
7094370 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7094411 AT AT AT AT AT AT
1 AT AT AT AT AT AT
7094423 CATGGTGGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7094566 original size:15 final size:14
Alignment explanation
Indices: 7094524--7094582 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
7094514 GTAATTGGTT
7094524 TTCTGGAAATTGAA
1 TTCTGGAAATTGAA
*
7094538 TTCTGGAAAATGAA
1 TTCTGGAAATTGAA
*
7094552 TTACTGGAATTTGAA
1 TT-CTGGAAATTGAA
* * *
7094567 TTTTAGAAAATGAA
1 TTCTGGAAATTGAA
7094581 TT
1 TT
7094583 ACATTTCTGG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
14 25 0.68
15 12 0.32
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (14 bp):
TTCTGGAAATTGAA
Found at i:7094568 original size:29 final size:29
Alignment explanation
Indices: 7094526--7094584 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
7094516 AATTGGTTTT
*
7094526 CTGGAAATTGAATTCTGGAAAATGAATTA
1 CTGGAAATTGAATTCTAGAAAATGAATTA
* *
7094555 CTGGAATTTGAATTTTAGAAAATGAATTA
1 CTGGAAATTGAATTCTAGAAAATGAATTA
7094584 C
1 C
7094585 ATTTCTGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.34
Consensus pattern (29 bp):
CTGGAAATTGAATTCTAGAAAATGAATTA
Found at i:7094885 original size:29 final size:28
Alignment explanation
Indices: 7094821--7094886 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 28
7094811 TAAATATATT
*
7094821 TTATAATTTATTAATAAAAATATTAATA
1 TTATATTTTATTAATAAAAATATTAATA
7094849 TGGTATATTTTATTGAAATAAAAATATTAA-A
1 T--TATATTTTATT--AATAAAAATATTAATA
7094880 TTATATT
1 TTATATT
7094887 AATTATTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
28 1 0.03
29 6 0.18
30 10 0.30
31 2 0.06
32 14 0.42
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (28 bp):
TTATATTTTATTAATAAAAATATTAATA
Found at i:7095130 original size:21 final size:20
Alignment explanation
Indices: 7095071--7095135 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
7095061 TTAAATAATT
* * *
7095071 TATATATATATTAAAATAAAA
1 TATAT-TATATTATATTATAA
*
7095092 TATATTATCTTATATTATAA
1 TATATTATATTATATTATAA
*
7095112 TATATTGATATTTTATTATAA
1 TATATT-ATATTATATTATAA
7095133 TAT
1 TAT
7095136 TAAAAATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TATATTATATTATATTATAA
Found at i:7095172 original size:49 final size:49
Alignment explanation
Indices: 7095087--7095235 Score: 134
Period size: 49 Copynumber: 3.1 Consensus size: 49
7095077 TATATTAAAA
* * * **
7095087 TAAAATATATTATCTTA-TATTATAATATATTGATATTTTATTATAATAT
1 TAAAA-ATATAATATTATTATTAAAATATATAAATATTTTATTATAATAT
7095136 TAAAAATATAATATTATTATTAAAATATATAAATA-TTT-TTA-AATATT
1 TAAAAATATAATATTATTATTAAAATATATAAATATTTTATTATAATA-T
*
7095183 TAATAAT-TAATATT-TTGATTAAAATGATAATAAAATATTTTA-T-TAATAT
1 TAAAAATATAATATTATT-ATTAAAAT-AT-AT-AAATATTTTATTATAATAT
7095232 TAAA
1 TAAA
7095236 TTCATAAAAT
Statistics
Matches: 84, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
45 2 0.02
46 19 0.23
47 12 0.14
48 14 0.17
49 29 0.35
50 8 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (49 bp):
TAAAAATATAATATTATTATTAAAATATATAAATATTTTATTATAATAT
Found at i:7095178 original size:19 final size:20
Alignment explanation
Indices: 7095133--7095172 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7095123 TTTATTATAA
7095133 TATTAAAAATATAATATTAT
1 TATTAAAAATATAATATTAT
7095153 TATTAAAATATATAAATATT
1 TATTAAAA-ATAT-AATATT
7095173 TTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 4 0.22
22 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTAAAAATATAATATTAT
Found at i:7095204 original size:27 final size:24
Alignment explanation
Indices: 7095119--7095232 Score: 71
Period size: 27 Copynumber: 4.7 Consensus size: 24
7095109 TAATATATTG
* *
7095119 ATATTTTATTATAATATTAAAAATATA
1 ATATTTTATTA-AATATT--TAATAAA
*
7095146 ATATTATTATTAAA-ATAT-AT-AA
1 ATATT-TTATTAAATATTTAATAAA
7095168 ATA-TTT-TTAAATATTTAATAATTA
1 ATATTTTATTAAATATTTAATAA--A
*
7095192 ATATTTTGATTAAA-ATGATAATAAA
1 ATATTTT-ATTAAATAT-TTAATAAA
7095217 ATATTTTATT-AATATT
1 ATATTTTATTAAATATT
7095233 AAATTCATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 26
0.69 0.06 0.25
Matches are distributed among these distances:
19 5 0.07
20 5 0.07
21 3 0.04
22 5 0.07
23 4 0.06
24 9 0.13
25 11 0.16
26 4 0.06
27 18 0.26
28 6 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATTTTATTAAATATTTAATAAA
Found at i:7095830 original size:20 final size:19
Alignment explanation
Indices: 7095793--7095830 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7095783 GCTCAGGGAA
7095793 CCGATTCCCCCAAAGGGGG
1 CCGATTCCCCCAAAGGGGG
7095812 CCGATTCCCCCAAAGGGGG
1 CCGATTCCCCCAAAGGGGG
7095831 TACCAATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.37, G:0.32, T:0.11
Consensus pattern (19 bp):
CCGATTCCCCCAAAGGGGG
Found at i:7095841 original size:21 final size:19
Alignment explanation
Indices: 7095796--7095843 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 19
7095786 CAGGGAACCG
*
7095796 ATTCCCCCAAAGGGGGCCG
1 ATTCCCCCAAAGGGGGCCA
7095815 ATTCCCCCAAAGGGGGTACCA
1 ATTCCCCCAAAGGGGG--CCA
7095836 ATTCCCCC
1 ATTCCCCC
7095844 TGAATGGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 16 0.62
21 10 0.38
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.15
Consensus pattern (19 bp):
ATTCCCCCAAAGGGGGCCA
Found at i:7101255 original size:20 final size:21
Alignment explanation
Indices: 7101232--7101312 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
7101222 TTGGTGCAGA
* *
7101232 GGGAATCGATCCCCCCTTGA-
1 GGGAACCGATACCCCCTTGAG
*
7101252 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCC-TTG-AG
**
7101275 GGGAACCGATACCCCCTACAG
1 GGGAACCGATACCCCCTTGAG
*
7101296 GGGAATCGATACCCCCT
1 GGGAACCGATACCCCCT
7101313 GGGGTTCTGG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
20 14 0.27
21 21 0.40
22 2 0.04
23 15 0.29
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (21 bp):
GGGAACCGATACCCCCTTGAG
Found at i:7101282 original size:23 final size:21
Alignment explanation
Indices: 7101230--7101291 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 21
7101220 TTTTGGTGCA
* *
7101230 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCTTT
7101250 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCTTT
*
7101271 GAAGGGGAACCGATACCCCCT
1 G-A-GGGAACCGATTCCCCCT
7101292 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCTTT
Found at i:7106619 original size:60 final size:60
Alignment explanation
Indices: 7106541--7106717 Score: 151
Period size: 60 Copynumber: 3.0 Consensus size: 60
7106531 TGAATTTAAT
* ** * * * * *
7106541 GATGAAATCAGAGGATTCAAAATTTTGAGGACCAATTTAGAATGCAAGTCATAGTTTCA-T
1 GATGAAATTAGAATATTCAAAAATTTGAGGACCAATTTAAAATGAAAATCATAGTTT-AGG
* * * * * * * *
7106601 GATGAAATT-GTTATATTCAATAGTTTGAGGACTATTTTATAATGAAATTCATAATTTAGG
1 GATGAAATTAG-AATATTCAAAAATTTGAGGACCAATTTAAAATGAAAATCATAGTTTAGG
* * *
7106661 GATGAAATTAGAATATTCAAAAAGTTAAGGACCGATTTAAAATGAAAATCATAGTTT
1 GATGAAATTAGAATATTCAAAAATTTGAGGACCAATTTAAAATGAAAATCATAGTTT
7106718 GAGGATATTT
Statistics
Matches: 90, Mismatches: 24, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
59 2 0.02
60 87 0.97
61 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.34
Consensus pattern (60 bp):
GATGAAATTAGAATATTCAAAAATTTGAGGACCAATTTAAAATGAAAATCATAGTTTAGG
Found at i:7109950 original size:75 final size:75
Alignment explanation
Indices: 7109849--7110108 Score: 421
Period size: 75 Copynumber: 3.5 Consensus size: 75
7109839 TCAATGTTTG
* *
7109849 CCGCACCTTGGTCCCCATGTGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
1 CCGCACCTTGCTCCCCATATGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
*
7109914 TATTCTTGGA
66 TCTTCTTGGA
* * *
7109924 CCGCACTTTGCTCCCCATATGGACCACGCATATCACCACTTTAAATATTTAAATTTGCATTATTT
1 CCGCACCTTGCTCCCCATATGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
7109989 TCTTCTTGGA
66 TCTTCTTGGA
* *
7109999 CCGCACTTTCCTCCCCATATGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
1 CCGCACCTTGCTCCCCATATGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
7110064 TCTTCTTGGA
66 TCTTCTTGGA
* * *
7110074 CCGCACCTTGCTCCCCATGTACACAACGCATATCA
1 CCGCACCTTGCTCCCCATATGCACCACGCATATCA
7110109 TTATTTAATT
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 171 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (75 bp):
CCGCACCTTGCTCCCCATATGCACCACGCATATCACCACTTTCAATATTTAAATTTGCATTATTT
TCTTCTTGGA
Found at i:7113657 original size:5 final size:5
Alignment explanation
Indices: 7113647--7113672 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7113637 TGGGACCTGA
7113647 ACCCG ACCCG ACCCG ACCCG ACCCG A
1 ACCCG ACCCG ACCCG ACCCG ACCCG A
7113673 TCGTGTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.19, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:7123278 original size:21 final size:21
Alignment explanation
Indices: 7123254--7123306 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
7123244 ATTCTGACTA
7123254 TCGCATTGCGA-TTTCTCAAAT
1 TCGCATTGCGATTTTC-CAAAT
* *
7123275 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
7123296 TCGCAATGCGA
1 TCGCATTGCGA
7123307 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:7123321 original size:20 final size:20
Alignment explanation
Indices: 7123296--7123386 Score: 137
Period size: 20 Copynumber: 4.5 Consensus size: 20
7123286 TTTTCCTAAT
7123296 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
7123316 TCGCAATGCGAATTTCGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
7123337 TCGTAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
7123357 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
7123377 TCGTAATGCG
1 TCGCAATGCG
7123387 GTTTACATAG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
20 46 0.73
21 17 0.27
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:7123326 original size:41 final size:41
Alignment explanation
Indices: 7123281--7123369 Score: 133
Period size: 41 Copynumber: 2.2 Consensus size: 41
7123271 AAATTCGCGT
* * *
7123281 TGCGATTTTCCTAATTCGCAATGCGAATACGTAAATCGCAA
1 TGCGAATTTCCAAAATCGCAATGCGAATACGTAAATCGCAA
* *
7123322 TGCGAATTTCGAAAATCGTAATGCGAATACGTAAATCGCAA
1 TGCGAATTTCCAAAATCGCAATGCGAATACGTAAATCGCAA
7123363 TGCGAAT
1 TGCGAAT
7123370 ACGTAAATCG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (41 bp):
TGCGAATTTCCAAAATCGCAATGCGAATACGTAAATCGCAA
Found at i:7123589 original size:22 final size:22
Alignment explanation
Indices: 7123564--7123625 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 22
7123554 GGCGACATCC
7123564 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
*
7123586 GTCCCCA----CGACGATATCA
1 GTCCCCATCTCCGACGAAATCA
* *
7123604 GTCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
7123626 TTCACGGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 16 0.50
22 16 0.50
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:7124067 original size:20 final size:19
Alignment explanation
Indices: 7123961--7124083 Score: 121
Period size: 20 Copynumber: 6.6 Consensus size: 19
7123951 GCGATTCTGT
7123961 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
7123980 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
7123999 CGTTGCGA--TTC--TT-G
1 CGTTGCGATTTTCATTTCG
** *
7124013 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTTTC-ATTTCG
**
7124033 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
7124053 TGTTGCGATTTTCATTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
7124073 TGTTGCGATTT
1 CGTTGCGATTT
7124084 AAAGTTTCAG
Statistics
Matches: 92, Mismatches: 5, Indels: 13
0.84 0.05 0.12
Matches are distributed among these distances:
14 9 0.10
15 2 0.02
16 2 0.02
17 3 0.03
19 30 0.33
20 46 0.50
ACGTcount: A:0.13, C:0.19, G:0.24, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:7124091 original size:20 final size:20
Alignment explanation
Indices: 7124048--7124091 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7124038 CGATAGTCAT
** *
7124048 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTAAAG
7124068 TTTCGTGTTGCGATTTAAAG
1 TTTCGTGTTGCGATTTAAAG
7124088 TTTC
1 TTTC
7124092 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTAAAG
Found at i:7126151 original size:22 final size:21
Alignment explanation
Indices: 7126121--7126161 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7126111 AAATTTACTC
*
7126121 GTAATTTCACTTAGATTGCTTA
1 GTAAATTCA-TTAGATTGCTTA
*
7126143 GTAAATTCATTCGATTGCT
1 GTAAATTCATTAGATTGCT
7126162 GCCAATACTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTCATTAGATTGCTTA
Found at i:7126306 original size:20 final size:20
Alignment explanation
Indices: 7126281--7126384 Score: 148
Period size: 20 Copynumber: 5.5 Consensus size: 20
7126271 AGAATAGTTT
7126281 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
7126301 ACTATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
7126321 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
7126337 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
7126355 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
7126375 ACTATCGCAA
1 ACTATCGCAA
7126385 CGAAAGAATC
Statistics
Matches: 75, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
14 7 0.09
16 4 0.05
17 4 0.05
18 4 0.05
20 56 0.75
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.17
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:7126370 original size:54 final size:54
Alignment explanation
Indices: 7126284--7126422 Score: 226
Period size: 54 Copynumber: 2.6 Consensus size: 54
7126274 ATAGTTTACT
* *
7126284 ATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
7126338 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
1 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
** *
7126392 ATCGCAATGCG-AAATGAAAATCGCACTGCGA
1 ATCGCAATGCGAAAATGACTATCGCAATGCGA
7126423 TTCTCTCGTT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 17 0.21
54 63 0.79
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (54 bp):
ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
Found at i:7126450 original size:34 final size:34
Alignment explanation
Indices: 7126412--7126564 Score: 137
Period size: 34 Copynumber: 4.4 Consensus size: 34
7126402 GAAATGAAAA
* *
7126412 TCGCACTGCGATTCTCTCGTTGCGATAGTCAAAT
1 TCGCATTGCGATTCTCTCGTTGCGATAGTCAATT
* *
7126446 TCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTT
1 TCGCATTGCGAT--TC--TCTCG--TTGCGATAGTCAATT
* * * * * **
7126486 TCGCGTTGCAATTTTGTTGTTGCGATTTTC-ATT
1 TCGCATTGCGATTCTCTCGTTGCGATAGTCAATT
*
7126519 TCGCATTGCGATTCTCTCGTTGCGATAGTCATTT
1 TCGCATTGCGATTCTCTCGTTGCGATAGTCAATT
7126553 TCGCATTGCGAT
1 TCGCATTGCGAT
7126565 AGTCATTTTC
Statistics
Matches: 92, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
33 25 0.27
34 34 0.37
36 5 0.05
38 5 0.05
40 23 0.25
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (34 bp):
TCGCATTGCGATTCTCTCGTTGCGATAGTCAATT
Found at i:7126483 original size:20 final size:20
Alignment explanation
Indices: 7126431--7126584 Score: 129
Period size: 20 Copynumber: 8.3 Consensus size: 20
7126421 GATTCTCTCG
**
7126431 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
7126451 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
7126471 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
7126491 TTGC-A-A-T--TTTGTTG--
1 TTGCGATAGTCATTT-TCGCA
**
7126505 TTGCGATTTTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
7126524 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
7126538 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
7126558 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
7126578 TTGCGAT
1 TTGCGAT
7126585 TTTAAGTTTC
Statistics
Matches: 111, Mismatches: 9, Indels: 28
0.75 0.06 0.19
Matches are distributed among these distances:
14 11 0.10
15 4 0.04
16 8 0.07
17 6 0.05
18 7 0.06
19 8 0.07
20 67 0.60
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:7127109 original size:18 final size:19
Alignment explanation
Indices: 7127070--7127111 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
7127060 CTCACCTGTC
7127070 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
7127091 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
7127109 ATC
1 ATC
7127112 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:7127165 original size:42 final size:42
Alignment explanation
Indices: 7127065--7127166 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
7127055 CCCGACTCAC
* * *
7127065 CTGTCATCGTTCAAGAGGCCTCCCCTATCGTTCAAGAGGCCC
1 CTGTCATCGTTCAAGAGGCCTCCCCCACCGTTCAAGAGGCCA
* ** * *
7127107 CTATCATCCCTCAAGAGTCC-CCTCCCACCGTTCAAGAGGTCA
1 CTGTCATCGTTCAAGAGGCCTCC-CCCACCGTTCAAGAGGCCA
*
7127149 CTGTCATCGTTGAAGAGG
1 CTGTCATCGTTCAAGAGG
7127167 TCCTTTCCAA
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
41 2 0.04
42 44 0.96
ACGTcount: A:0.22, C:0.34, G:0.21, T:0.24
Consensus pattern (42 bp):
CTGTCATCGTTCAAGAGGCCTCCCCCACCGTTCAAGAGGCCA
Found at i:7128550 original size:14 final size:14
Alignment explanation
Indices: 7128531--7128566 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7128521 ATTGTTTAAT
7128531 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
7128545 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
7128559 TGATTTGT
1 TGATTTGT
7128567 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7128804 original size:19 final size:19
Alignment explanation
Indices: 7128780--7128866 Score: 174
Period size: 19 Copynumber: 4.6 Consensus size: 19
7128770 GATTCACTCG
7128780 TTGCGATTCTCATTTCGCA
1 TTGCGATTCTCATTTCGCA
7128799 TTGCGATTCTCATTTCGCA
1 TTGCGATTCTCATTTCGCA
7128818 TTGCGATTCTCATTTCGCA
1 TTGCGATTCTCATTTCGCA
7128837 TTGCGATTCTCATTTCGCA
1 TTGCGATTCTCATTTCGCA
7128856 TTGCGATTCTC
1 TTGCGATTCTC
7128867 TCGTTGCGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 68 1.00
ACGTcount: A:0.15, C:0.26, G:0.16, T:0.43
Consensus pattern (19 bp):
TTGCGATTCTCATTTCGCA
Found at i:7128893 original size:20 final size:20
Alignment explanation
Indices: 7128868--7128936 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 20
7128858 GCGATTCTCT
7128868 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCAATTCCG
*
7128888 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCAATTCCG
* *
7128908 TGTTGCGATAGTCATATT-TG
1 CGTTGCGATAGTCA-ATTCCG
7128928 CGTTGCGAT
1 CGTTGCGAT
7128937 TTCAGCGTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTCCG
Found at i:7131402 original size:24 final size:24
Alignment explanation
Indices: 7131368--7131421 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7131358 TGAAAAAATC
7131368 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
7131392 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7131416 ATCAAA
1 ATCAAA
7131422 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7131435 original size:24 final size:24
Alignment explanation
Indices: 7131368--7131435 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
7131358 TGAAAAAATC
* * *
7131368 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
7131392 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
7131416 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
7131436 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:7132297 original size:20 final size:20
Alignment explanation
Indices: 7132274--7132331 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
7132264 TTGCGATAAT
* *
7132274 CAGAATCTCGTTGCGATTCA
1 CAGAATCGCATTGCGATTCA
* *
7132294 CAGATTCGCATTGCGATTTA
1 CAGAATCGCATTGCGATTCA
*
7132314 C-GTAATCGCAATGCGATT
1 CAG-AATCGCATTGCGATT
7132332 TTCCAAATTC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (20 bp):
CAGAATCGCATTGCGATTCA
Found at i:7132332 original size:20 final size:20
Alignment explanation
Indices: 7132299--7132370 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
7132289 ATTCACAGAT
7132299 TCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAA
* * **
7132319 TCGCAATGCGATTTTCCAAA
1 TCGCATTGCGATTTACGTAA
* *
7132339 TTCGCGTTGCGATTTACGTAT
1 -TCGCATTGCGATTTACGTAA
7132360 TCGCATTGCGA
1 TCGCATTGCGA
7132371 ATTAGGAAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 26 0.65
21 14 0.35
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAA
Found at i:7132412 original size:21 final size:21
Alignment explanation
Indices: 7132360--7132412 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7132350 ATTTACGTAT
*
7132360 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTAGGAAAA
* * *
7132381 TCGCAACGCGAATTTGGGAAA
1 TCGCAATGCGAATTAGGAAAA
*
7132402 TCGTAATGCGA
1 TCGCAATGCGA
7132413 TAGTCAGAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTAGGAAAA
Found at i:7147747 original size:2 final size:2
Alignment explanation
Indices: 7147740--7147770 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7147730 TTTATCAATG
7147740 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7147771 ATTAGGTCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7152774 original size:2 final size:2
Alignment explanation
Indices: 7152769--7152798 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7152759 ACACAAACTA
7152769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7152799 TCTCTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7153326 original size:30 final size:29
Alignment explanation
Indices: 7153280--7153346 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 29
7153270 GTTTCTTTTC
7153280 AGGTTCTTTCGGTTTCTTCTCGGGCTCCTT
1 AGGTT-TTTCGGTTTCTTCTCGGGCTCCTT
*
7153310 GGGTTTTTCAGGTTTCTTCTCGGGCTCCTT
1 AGGTTTTTC-GGTTTCTTCTCGGGCTCCTT
7153340 AGGTTTT
1 AGGTTTT
7153347 GGAGGTGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.04, C:0.22, G:0.25, T:0.48
Consensus pattern (29 bp):
AGGTTTTTCGGTTTCTTCTCGGGCTCCTT
Found at i:7154619 original size:4 final size:4
Alignment explanation
Indices: 7154610--7154650 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
7154600 AAATCAAAAG
7154610 ATAA ATAA AT-A AT-A AT-A ATAA ATAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
7154651 GAAAATACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 9 0.25
4 27 0.75
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:7157469 original size:3 final size:3
Alignment explanation
Indices: 7157455--7157514 Score: 70
Period size: 3 Copynumber: 20.3 Consensus size: 3
7157445 TATTTATTTG
* *
7157455 TAA TAA -AA TAA TAA TAA TAA T-A TAT TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7157501 TAA TTAA GAA TAA T
1 TAA -TAA TAA TAA T
7157515 TTTAATGAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.08
3 41 0.85
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7158316 original size:10 final size:10
Alignment explanation
Indices: 7158304--7158337 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7158294 TTTCACAAAG
*
7158304 ATAAGATAAG
1 ATAAGATAAA
7158314 ATAAGATAAA
1 ATAAGATAAA
*
7158324 ATAAAATAAA
1 ATAAGATAAA
7158334 ATAA
1 ATAA
7158338 AAGTGAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (10 bp):
ATAAGATAAA
Found at i:7158321 original size:15 final size:15
Alignment explanation
Indices: 7158301--7158339 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7158291 AATTTTCACA
* *
7158301 AAGATAAGATAAGAT
1 AAGATAAAATAAAAT
7158316 AAGATAAAATAAAAT
1 AAGATAAAATAAAAT
*
7158331 AAAATAAAA
1 AAGATAAAA
7158340 GTGAAAAGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (15 bp):
AAGATAAAATAAAAT
Found at i:7158817 original size:18 final size:19
Alignment explanation
Indices: 7158779--7158818 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7158769 CTTTAGAGGT
7158779 AAAACAATAATAATATAAC
1 AAAACAATAATAATATAAC
7158798 AAAAC-ATAACTAATAT-AC
1 AAAACAATAA-TAATATAAC
7158816 AAA
1 AAA
7158819 TATTACATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAACAATAATAATATAAC
Found at i:7159710 original size:17 final size:19
Alignment explanation
Indices: 7159682--7159730 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7159672 TATTTTGAAA
7159682 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
7159700 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
7159719 CACCGATGCACT
1 CATCGATGCACT
7159731 AAGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:7159798 original size:21 final size:21
Alignment explanation
Indices: 7159768--7159823 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
7159758 TTTTACACTG
*
7159768 ATGCACCGATGCACCTAGGGT
1 ATGCATCGATGCACCTAGGGT
7159789 ATGCATCGATGCACCTAGGGT
1 ATGCATCGATGCACCTAGGGT
*
7159810 ATGCATTGATGCAC
1 ATGCATCGATGCAC
7159824 TGATGCTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (21 bp):
ATGCATCGATGCACCTAGGGT
Found at i:7168302 original size:56 final size:55
Alignment explanation
Indices: 7168249--7168391 Score: 155
Period size: 56 Copynumber: 2.5 Consensus size: 55
7168239 TTCATGCATC
*
7168249 GATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCATTT
1 GATGCACAT-CCATGCACCGATGCACTGAGGATATTT-TG-AAACATCGAATGCACTT
* * ** *
7168306 GATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACTT
1 GATGCA-CATCCATGCACCGATGCACTGAGGATATTTTGAAACATCGAATGCACTT
*
7168362 GATGCAC-TCTTAGTGCACCGATGCACTGAG
1 GATGCACATC-CA-TGCACCGATGCACTGAG
7168392 AGTCCAACGG
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
54 1 0.01
55 2 0.03
56 36 0.51
57 27 0.38
58 5 0.07
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (55 bp):
GATGCACATCCATGCACCGATGCACTGAGGATATTTTGAAACATCGAATGCACTT
Found at i:7180495 original size:2 final size:2
Alignment explanation
Indices: 7180480--7180517 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
7180470 AAACTATACC
7180480 AT AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7180518 TAGTTTTGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7181156 original size:2 final size:2
Alignment explanation
Indices: 7181149--7181175 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7181139 TGTTTATGTT
7181149 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7181176 TTGTTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7181997 original size:2 final size:2
Alignment explanation
Indices: 7181990--7182023 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7181980 AAGCATATTT
7181990 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7182024 CATTACTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7182299 original size:82 final size:83
Alignment explanation
Indices: 7182212--7182376 Score: 305
Period size: 82 Copynumber: 2.0 Consensus size: 83
7182202 AATTATCTAA
7182212 TTATATTATTTATTTAATATTATTTCTATATCAAATAAATAAATAATCATAAAAAAAATA-TCTA
1 TTATATTATTTATTTAATATTATTTCTATATCAAATAAATAAATAATCATAAAAAAAATATTCTA
7182276 ACAAAAAAATACAAATTT
66 ACAAAAAAATACAAATTT
*
7182294 TTATATTATTTATTTAATATTATTTCTATATCAAATAAATAAATAATCATAAACAAAATATTCTA
1 TTATATTATTTATTTAATATTATTTCTATATCAAATAAATAAATAATCATAAAAAAAATATTCTA
*
7182359 ACAAAAGAATACAAATTT
66 ACAAAAAAATACAAATTT
7182377 AACTTATTTA
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
82 59 0.74
83 21 0.26
ACGTcount: A:0.52, C:0.08, G:0.01, T:0.39
Consensus pattern (83 bp):
TTATATTATTTATTTAATATTATTTCTATATCAAATAAATAAATAATCATAAAAAAAATATTCTA
ACAAAAAAATACAAATTT
Found at i:7184097 original size:50 final size:50
Alignment explanation
Indices: 7184043--7184144 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
7184033 CATCTTTTTA
7184043 TATTCCTTTTAATGTTTTTTTGGGCCTTTAAGACACACGATCAATAAATG
1 TATTCCTTTTAATGTTTTTTTGGGCCTTTAAGACACACGATCAATAAATG
7184093 TATTCCTTTTAATGTTTTTTTGGGCCTTTAAGACACACGATCAATAAATG
1 TATTCCTTTTAATGTTTTTTTGGGCCTTTAAGACACACGATCAATAAATG
7184143 TA
1 TA
7184145 ATCACGGCCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (50 bp):
TATTCCTTTTAATGTTTTTTTGGGCCTTTAAGACACACGATCAATAAATG
Found at i:7187446 original size:123 final size:123
Alignment explanation
Indices: 7187227--7187474 Score: 487
Period size: 123 Copynumber: 2.0 Consensus size: 123
7187217 GGTAACTAAA
7187227 AGCAGACTAAAAGAGTAAATTTAAGAACCTGTCATAACCAGATGAACTTTTAGAAAGTATCATTT
1 AGCAGACTAAAAGAGTAAATTTAAGAACCTGTCATAACCAGATGAACTTTTAGAAAGTATCATTT
7187292 AGGAATTACCAACGTGGTTTATGACTCCAAAAATGTGCTTTTGATCTGCTTTCCTCAT
66 AGGAATTACCAACGTGGTTTATGACTCCAAAAATGTGCTTTTGATCTGCTTTCCTCAT
7187350 AGCAGACTAAAAGAGTAAATTTAAGAACCTGTCATAACCAGATGAACTTTTAGAAAGTATCATTT
1 AGCAGACTAAAAGAGTAAATTTAAGAACCTGTCATAACCAGATGAACTTTTAGAAAGTATCATTT
*
7187415 AGGAATTACCAACGTGGTTTATGACTCCAAAAATGTGCTTTTGATCTGCTTTCTTCAT
66 AGGAATTACCAACGTGGTTTATGACTCCAAAAATGTGCTTTTGATCTGCTTTCCTCAT
7187473 AG
1 AG
7187475 GTGGAATTAA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (123 bp):
AGCAGACTAAAAGAGTAAATTTAAGAACCTGTCATAACCAGATGAACTTTTAGAAAGTATCATTT
AGGAATTACCAACGTGGTTTATGACTCCAAAAATGTGCTTTTGATCTGCTTTCCTCAT
Found at i:7187651 original size:71 final size:71
Alignment explanation
Indices: 7187535--7187676 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
7187525 TTTTCTCATT
7187535 GTCTGCAGGATGACTATTTGGATTGCTTTGGCAATCCTGAGACCATTGGTAAGGTGAGATATGGA
1 GTCTGCAGGATGACTATTTGGATTGCTTTGGCAATCCTGAGACCATTGGTAAGGTGAGATATGGA
7187600 TTATGG
66 TTATGG
7187606 GTCTGCAGGATGACTATTTGGATTGCTTTGGCAATCCTGAGACCATTGGTAAGGTGAGATATGGA
1 GTCTGCAGGATGACTATTTGGATTGCTTTGGCAATCCTGAGACCATTGGTAAGGTGAGATATGGA
7187671 TTATGG
66 TTATGG
7187677 AGCTAAAAGT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (71 bp):
GTCTGCAGGATGACTATTTGGATTGCTTTGGCAATCCTGAGACCATTGGTAAGGTGAGATATGGA
TTATGG
Found at i:7188718 original size:2 final size:2
Alignment explanation
Indices: 7188711--7188741 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7188701 GAAATAAGTA
7188711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7188742 AAGAACCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7189042 original size:25 final size:25
Alignment explanation
Indices: 7189007--7189054 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
7188997 ACCAATTCTT
7189007 CATCTCCGACTTTCTCTGACATCGA
1 CATCTCCGACTTTCTCTGACATCGA
*
7189032 CATCTCTGACTTTCTCTGACATC
1 CATCTCCGACTTTCTCTGACATC
7189055 AACGAAAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.19, C:0.35, G:0.10, T:0.35
Consensus pattern (25 bp):
CATCTCCGACTTTCTCTGACATCGA
Found at i:7190776 original size:3 final size:3
Alignment explanation
Indices: 7190768--7190839 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
7190758 AACTTGCTTC
7190768 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7190816 ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
7190840 TAAGTAACAC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7191496 original size:18 final size:18
Alignment explanation
Indices: 7191473--7191525 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 18
7191463 CACCATAATC
7191473 TTATTTTATAATAATATT
1 TTATTTTATAATAATATT
*
7191491 TTATTTTCACTAATAATCTT
1 TTATTTT-A-TAATAATATT
* *
7191511 ATATTCTATAA-AATA
1 TTATTTTATAATAATA
7191526 AACGCAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 2 0.07
20 14 0.48
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTTTATAATAATATT
Found at i:7192875 original size:39 final size:39
Alignment explanation
Indices: 7192832--7192909 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
7192822 TATGATTGAT
* *
7192832 CAGGTTATGAACTTCTAGAGTAGCTTGAAATACAGAAAG
1 CAGGTTATAAACTTCTAGAGTAGCCTGAAATACAGAAAG
*
7192871 CAGGTTATAAACTTCTAGAGTTGCCTGAAATACAGAAAG
1 CAGGTTATAAACTTCTAGAGTAGCCTGAAATACAGAAAG
7192910 GGTGAAGCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (39 bp):
CAGGTTATAAACTTCTAGAGTAGCCTGAAATACAGAAAG
Found at i:7207057 original size:53 final size:53
Alignment explanation
Indices: 7206996--7207103 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
7206986 ATTATCAATA
7206996 ATTGTTCATCATTGTTATCAGTCACAGTCAATTATCATCACTGGTCGTCATCT
1 ATTGTTCATCATTGTTATCAGTCACAGTCAATTATCATCACTGGTCGTCATCT
7207049 ATTGTTCATCATTGTTATCAGTCACAGTCAATTATCATCACTGGTCGTCATCT
1 ATTGTTCATCATTGTTATCAGTCACAGTCAATTATCATCACTGGTCGTCATCT
7207102 AT
1 AT
7207104 GATCGTTAGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (53 bp):
ATTGTTCATCATTGTTATCAGTCACAGTCAATTATCATCACTGGTCGTCATCT
Found at i:7211645 original size:15 final size:16
Alignment explanation
Indices: 7211620--7211663 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
7211610 TTTGCCATTA
*
7211620 AATTAATTTATAAAAT
1 AATTAAATTATAAAAT
7211636 -ATTAAATTAT-AAAT
1 AATTAAATTATAAAAT
7211650 AATTAAAATTATAA
1 AATT-AAATTATAA
7211664 TTATAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 4 0.17
15 12 0.50
16 7 0.29
17 1 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAATTATAAAAT
Done.