Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8285662
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 35
Found at i:7211667 original size:22 final size:22
Alignment explanation
Indices: 7211636--7211709 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
7211626 TTTATAAAAT
7211636 ATTA-AATTATAAATAATTAAA
1 ATTATAATTATAAATAATTAAA
*
7211657 ATTATAATTATAAATTAGTTAAAA
1 ATTATAATTATAAA-TAATT-AAA
* *
7211681 ATT-TAAATATAATTTAATTAAA
1 ATTATAATTATAA-ATAATTAAA
7211703 A-TATAAT
1 ATTATAAT
7211710 ATTTATAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 5 0.12
22 16 0.37
23 16 0.37
24 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (22 bp):
ATTATAATTATAAATAATTAAA
Found at i:7211678 original size:23 final size:23
Alignment explanation
Indices: 7211636--7211709 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
7211626 TTTATAAAAT
7211636 ATTA-AATTATAAA-TAATTAAA
1 ATTATAATTATAAATTAATTAAA
*
7211657 ATTATAATTATAAATTAGTTAAAA
1 ATTATAATTATAAATTAATT-AAA
* *
7211681 ATT-TAAATATAATTTAATTAAA
1 ATTATAATTATAAATTAATTAAA
7211703 A-TATAAT
1 ATTATAAT
7211710 ATTTATAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 5 0.11
22 16 0.36
23 17 0.39
24 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (23 bp):
ATTATAATTATAAATTAATTAAA
Found at i:7211691 original size:29 final size:29
Alignment explanation
Indices: 7211638--7211705 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
7211628 TATAAAATAT
7211638 TAAATTATAAATAATTAAAATTATAATTA
1 TAAATTATAAATAATTAAAATTATAATTA
*
7211667 TAAATTAGTTAAA-AATTTAAA-TATAATT-
1 TAAATTA--TAAATAATTAAAATTATAATTA
7211695 T-AATTA-AAATA
1 TAAATTATAAATA
7211706 TAATATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
24 3 0.09
25 1 0.03
27 5 0.14
28 1 0.03
29 14 0.40
30 7 0.20
31 4 0.11
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (29 bp):
TAAATTATAAATAATTAAAATTATAATTA
Found at i:7212779 original size:20 final size:20
Alignment explanation
Indices: 7212754--7212791 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7212744 TTTGGTTCAC
7212754 GGAATGTAAGATTACCAGTG
1 GGAATGTAAGATTACCAGTG
7212774 GGAATGTAAGATTACCAG
1 GGAATGTAAGATTACCAG
7212792 AGAATAGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.24
Consensus pattern (20 bp):
GGAATGTAAGATTACCAGTG
Found at i:7212993 original size:2 final size:2
Alignment explanation
Indices: 7212986--7213029 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
7212976 CATAAAATTC
*
7212986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7213028 AT
1 AT
7213030 TTACAAAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7217730 original size:17 final size:16
Alignment explanation
Indices: 7217693--7217729 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7217683 AGAAGTCGGA
*
7217693 TTTTAATCCGATCCGG
1 TTTTTATCCGATCCGG
*
7217709 TTTTTATCCGATCCTG
1 TTTTTATCCGATCCGG
7217725 TTTTT
1 TTTTT
7217730 TCCCATAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTTTATCCGATCCGG
Found at i:7219075 original size:32 final size:33
Alignment explanation
Indices: 7218979--7219077 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
7218969 TAACTCAAAT
* * *
7218979 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7219012 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7219045 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7219077 A
1 A
7219078 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:7219096 original size:21 final size:21
Alignment explanation
Indices: 7219072--7219113 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7219062 ACTTCAAGTT
7219072 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
7219093 CGATAATTGAAATAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
7219114 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:7220526 original size:85 final size:86
Alignment explanation
Indices: 7220425--7220595 Score: 303
Period size: 85 Copynumber: 2.0 Consensus size: 86
7220415 ATCTTGGAAC
7220425 CGCGTTTGTATTATTCGATGCATTATCAAAGGATATAGAAAAAAACTTTA-TTTCTAATTTATAA
1 CGCGTTTGTATTATTCGATGCATTATCAAAGGATATAG-AAAAAACTTTATTTTCTAATTTATAA
7220489 AGACACAATTACCC-TTTTAAAA
65 AGACA-AATTACCCTTTTTAAAA
7220511 CGCG-TTGTATTATTCGATGCATTATCAAAGGATATAGAAAAAACTTTATTTTCTAATTTATAAA
1 CGCGTTTGTATTATTCGATGCATTATCAAAGGATATAGAAAAAACTTTATTTTCTAATTTATAAA
7220575 GACAAATTACCCTTTTTAAAA
66 GACAAATTACCCTTTTTAAAA
7220596 GTGTAAATAA
Statistics
Matches: 83, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
84 19 0.23
85 60 0.72
86 4 0.05
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (86 bp):
CGCGTTTGTATTATTCGATGCATTATCAAAGGATATAGAAAAAACTTTATTTTCTAATTTATAAA
GACAAATTACCCTTTTTAAAA
Found at i:7221357 original size:18 final size:18
Alignment explanation
Indices: 7221334--7221370 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7221324 AATCAACCAA
7221334 ATACATCCCAACCTATTT
1 ATACATCCCAACCTATTT
7221352 ATACATCCCAACCTATTT
1 ATACATCCCAACCTATTT
7221370 A
1 A
7221371 CAATGAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (18 bp):
ATACATCCCAACCTATTT
Found at i:7227146 original size:223 final size:224
Alignment explanation
Indices: 7226741--7227183 Score: 741
Period size: 223 Copynumber: 2.0 Consensus size: 224
7226731 GTAAATTATC
* *
7226741 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA-CTTTAGT
*
7226806 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
65 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA-TATT
7226871 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
129 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
7226936 AAACATAAATTACATAACTTTCAAAAAATATA
194 AAACATAAATTACATAACTTT-AAAAAATATA
*
7226968 TATCATTTTTATAAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTA-TA-TTTGG
1 TATCATTTTTAT-AAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTACTTTAG
*
7227031 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTAT-AAATATCAAAACAATCAAATAA-ATT
64 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
* * *
7227094 TGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGGAACACTATTAAATAAATTG
129 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
7227159 AAACATAAATTACATAACTTTAAAA
194 AAACATAAATTACATAACTTTAAAA
7227184 GCAGTTTTAA
Statistics
Matches: 206, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
222 4 0.02
223 85 0.41
225 22 0.11
226 41 0.20
227 11 0.05
228 27 0.13
229 16 0.08
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (224 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTACTTTAGTT
AATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTG
TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
ACATAAATTACATAACTTTAAAAAATATA
Found at i:7227271 original size:20 final size:19
Alignment explanation
Indices: 7227248--7227293 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
7227238 CGATATACCA
7227248 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
7227268 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
7227288 GGTAAA
1 GGTAAA
7227294 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7227439 original size:20 final size:19
Alignment explanation
Indices: 7227416--7227462 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
7227406 CGATATAACA
7227416 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
7227436 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
7227456 GGTAAAA
1 GGTAAAA
7227463 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7227464 original size:17 final size:18
Alignment explanation
Indices: 7227420--7227467 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
7227410 ATAACAGGTA
7227420 AAAATATGATAAAACCGGT
1 AAAA-ATGATAAAACCGGT
7227439 AACAAAATGATAAAACCGGT
1 -A-AAAATGATAAAACCGGT
7227459 -AAAATGATA
1 AAAAATGATA
7227468 CCGGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (18 bp):
AAAAATGATAAAACCGGT
Found at i:7229719 original size:21 final size:21
Alignment explanation
Indices: 7229672--7229736 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7229662 CAAAGACAAA
* *
7229672 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
7229694 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
7229714 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
7229735 AG
1 AG
7229737 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:7231614 original size:19 final size:19
Alignment explanation
Indices: 7231590--7231638 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
7231580 TATTACGAGT
7231590 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
7231609 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
7231628 TATTTTTGTAT
1 TAATTTTGTAT
7231639 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:7233092 original size:199 final size:199
Alignment explanation
Indices: 7231754--7233706 Score: 3520
Period size: 199 Copynumber: 9.9 Consensus size: 199
7231744 CAATATGGCC
* *
7231754 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAA-CATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
7231818 ACC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
7231882 AGAATATGTCTAAAT-ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATG
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATG
7231946 AATTAAA
193 AATTAAA
7231953 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-ACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7232017 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT--GAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232080 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTTGTGTCGATATTTTTTTTTTTCCAGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAG-TTTGTGTCGATA---TTTTTTTTCCAGAAT
7232145 GAATTAAA
192 GAATTAAA
7232153 AACAAGGTGCACCCATAAAGTGTCGATCCATATA-AAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7232217 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCAGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232282 AATATGTCTAAATAATGTGTCGAC-CTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAA
7232346 --AAA
195 TTAAA
*
7232349 AACAATGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7232414 CAAAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232478 AATATGTCTAAATAATGTGTCGACACTAATATAG-TT-TGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
7232541 T-AA
196 TAAA
7232544 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7232609 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTAC-ATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232673 -ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTT-CCAGAATGAA
7232737 TTAAA
195 TTAAA
7232742 AACAAGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCC-AAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7232804 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* *
7232868 AATATGTCTAAATAATATGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
7232933 TAAA
196 TAAA
*
7232937 AACAAGGTGCACCCATAAAGTGTCGATCTATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7233002 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7233067 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCG--ATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
7233130 TAAA
196 TAAA
7233134 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7233198 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7233263 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
7233328 TAAA
196 TAAA
7233332 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7233397 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* **
7233462 AATATGTCTAAATAATGTGTCGACACAAATATAGTTTGTGTCGATATTTTTTCCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
**
7233527 GGAA
196 TAAA
*
7233531 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCAAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7233596 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAAAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7233661 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
7233707 CTAATTTAAA
Statistics
Matches: 1704, Mismatches: 23, Indels: 54
0.96 0.01 0.03
Matches are distributed among these distances:
194 55 0.03
195 233 0.14
196 365 0.21
197 172 0.10
198 249 0.15
199 462 0.27
200 132 0.08
201 9 0.01
202 27 0.02
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
TAAA
Found at i:7233333 original size:395 final size:397
Alignment explanation
Indices: 7231754--7233706 Score: 3491
Period size: 395 Copynumber: 4.9 Consensus size: 397
7231744 CAATATGGCC
* *
7231754 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAA-CATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
7231818 ACC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
7231882 AGAATATGTCTAAAT-ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATG
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGA-A-TTTTTTTTCCAGAATG
7231946 AATTAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA
192 AATTAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA
7232011 TCG-ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
257 TCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
7232075 AT--GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTTGTGTCGATATTTTTTTTTTT
322 ATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAG-TTTGTGTCGATA---TTTTTTTT
7232138 CCAGAATGAATTAAA
383 CCAGAATGAATTAAA
7232153 AACAAGGTGCACCCATAAAGTGTCGATCCATATA-AAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7232217 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCAGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232282 AATATGTCTAAATAATGTGTCGAC-CTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGA-A-TTTTTTTTCCAGAATGAA
*
7232346 --AAAAACAATGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
194 TTAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
7232409 GAACCCAAAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
259 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
7232473 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAG-TT-TGTCGATATTTTTTTTCCAGAA
324 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAA
7232536 TGAATT-AA
389 TGAATTAAA
7232544 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7232609 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTAC-ATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7232673 -ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGA-ATTTTTTTT-CCAGAATGAA
7232737 TTAAAAACAAGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCC-AAATCATC
194 TTAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
7232799 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTAT
259 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
* *
7232863 GAGAGAATATGTCTAAATAATATGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAA
324 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAA
7232928 TGAATTAAA
389 TGAATTAAA
*
7232937 AACAAGGTGCACCCATAAAGTGTCGATCTATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7233002 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7233067 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCG-ATTTTTTTTCCAGAATGAATT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAATTTTTTTTCCAGAATGAATT
7233131 AAAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGA
196 AAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
7233195 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
7233260 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATG
326 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATG
7233325 AATTAAA
391 AATTAAA
7233332 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7233397 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* **
7233462 AATATGTCTAAATAATGTGTCGACACAAATATAGTTTGTGTCGATATTTTTTCCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGA-ATTTTTTTTCCAGAATGAAT
** *
7233527 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCAAAAATCATCG
195 TAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
7233592 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
260 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
7233657 AAAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
325 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
7233707 CTAATTTAAA
Statistics
Matches: 1509, Mismatches: 21, Indels: 49
0.96 0.01 0.03
Matches are distributed among these distances:
390 124 0.08
391 125 0.08
392 164 0.11
393 164 0.11
394 76 0.05
395 313 0.21
396 103 0.07
397 102 0.07
398 295 0.20
399 43 0.03
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (397 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAATTTTTTTTCCAGAATGAATT
AAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATG
AATTAAA
Found at i:7235186 original size:3 final size:3
Alignment explanation
Indices: 7235166--7235252 Score: 75
Period size: 3 Copynumber: 29.0 Consensus size: 3
7235156 GGTCGCAGAA
* * * * * ** *
7235166 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* * *
7235214 GAT GAT GAC AAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
7235253 CCAAACAAGT
Statistics
Matches: 63, Mismatches: 21, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:7237024 original size:184 final size:184
Alignment explanation
Indices: 7236715--7237426 Score: 1307
Period size: 184 Copynumber: 3.9 Consensus size: 184
7236705 CTTTCAACAT
** * * * * *
7236715 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
*
7236780 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
7236845 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
7236899 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
7236964 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
7237029 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
7237083 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
7237148 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
7237213 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
7237267 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACTGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
* *
7237332 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
* *
7237397 AATGTGTCGATACCATTGAAAAAAGTGTCG
131 AATGTGTCGATACGATTTAAAAAAGTGTCG
7237427 GTAATTTGAA
Statistics
Matches: 515, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 515 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:7239118 original size:23 final size:23
Alignment explanation
Indices: 7239087--7239150 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7239077 ATAGGTAAAC
*
7239087 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7239110 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7239133 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7239151 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7239157 original size:23 final size:23
Alignment explanation
Indices: 7239087--7239159 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7239077 ATAGGTAAAC
* **
7239087 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7239110 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7239133 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7239156 ATAT
1 ATAT
7239160 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7239451 original size:25 final size:25
Alignment explanation
Indices: 7239423--7239473 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7239413 ACAACAAATC
*
7239423 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
7239448 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
7239473 A
1 A
7239474 TTTGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:7239788 original size:18 final size:18
Alignment explanation
Indices: 7239767--7239803 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7239757 GTAATTGGAG
7239767 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
7239785 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
7239803 T
1 T
7239804 ATTTATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:7239811 original size:24 final size:23
Alignment explanation
Indices: 7239758--7239808 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
7239748 ATTTCATATG
*
7239758 TAATTGGAGTTTGAATTTAAATT
1 TAATTTGAGTTTGAATTTAAATT
7239781 TCAATTTGAGTTTGAATTTCAATATT
1 T-AATTTGAGTTTGAATTT-AA-ATT
7239807 TA
1 TA
7239809 TTTCGGCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 1 0.04
24 16 0.67
25 3 0.12
26 4 0.17
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TAATTTGAGTTTGAATTTAAATT
Found at i:7240518 original size:23 final size:23
Alignment explanation
Indices: 7240487--7240550 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7240477 ATAGGTAAAC
*
7240487 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7240510 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7240533 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7240551 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7240557 original size:23 final size:23
Alignment explanation
Indices: 7240487--7240559 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7240477 ATAGGTAAAC
* **
7240487 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7240510 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7240533 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7240556 ATAT
1 ATAT
7240560 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7252809 original size:62 final size:60
Alignment explanation
Indices: 7252736--7252889 Score: 202
Period size: 62 Copynumber: 2.5 Consensus size: 60
7252726 TATTACTTTA
* *
7252736 TTGAGTCATCTAATTATTAAAAGTTATAAAATAATCTCTTGTTTATAGAGAGTTGTTTTG
1 TTGAGTCATCTAATTATTAAAAGTTATAAAATAATCTCATGTTTATAGAGAGTTATTTTG
* * * *
7252796 TTGTGAGTCATCTAATTATTAAAAGTTATAAAGTAGTCTCATGTTTATAGATATTTATTTTG
1 -T-TGAGTCATCTAATTATTAAAAGTTATAAAATAATCTCATGTTTATAGAGAGTTATTTTG
* *
7252858 TTGAGTC-TCTTAACTATTAAAAGTTACAAAAT
1 TTGAGTCATC-TAATTATTAAAAGTTATAAAAT
7252890 GGTCATTTAA
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
59 2 0.02
60 25 0.30
61 2 0.02
62 53 0.65
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (60 bp):
TTGAGTCATCTAATTATTAAAAGTTATAAAATAATCTCATGTTTATAGAGAGTTATTTTG
Found at i:7253232 original size:59 final size:59
Alignment explanation
Indices: 7253120--7253233 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 59
7253110 ATCAAATGAC
* * *
7253120 CATTTTGTAACTTTCAATAGTCGAAGGACTCAATAAAAAAATCTCTTTAATCGAGGTAT
1 CATTATGTAACTTTCAATAGCCGAAGGACTCAATAAAAAAATATCTTTAATCGAGGTAT
* * *
7253179 CATTATGTAACTTAT-AATAGCCG-ATGACTCAATAAAACAATATCTTATTATCGAG
1 CATTATGTAACTT-TCAATAGCCGAAGGACTCAATAAAAAAATATCTT-TAATCGAG
7253234 AGATAATTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 20 0.43
59 26 0.55
60 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (59 bp):
CATTATGTAACTTTCAATAGCCGAAGGACTCAATAAAAAAATATCTTTAATCGAGGTAT
Found at i:7253446 original size:27 final size:26
Alignment explanation
Indices: 7253387--7253437 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
7253377 TATTTTTATA
*
7253387 CAATTATAATTATTATTATTTGTGCG
1 CAATTATAATTATTAATATTTGTGCG
*
7253413 CATTTATAATGTATTAATATTTGTG
1 CAATTATAAT-TATTAATATTTGTG
7253438 TTTAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (26 bp):
CAATTATAATTATTAATATTTGTGCG
Found at i:7253928 original size:31 final size:31
Alignment explanation
Indices: 7253855--7253920 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7253845 AGTTACATCG
* * *
7253855 GGGACCATATTGCAAACGGACTAAATGTTGA
1 GGGACAATATTACAAACGAACTAAATGTTGA
* *
7253886 GGGACAATATTACAAACGAACTAAATTTTGG
1 GGGACAATATTACAAACGAACTAAATGTTGA
7253917 GGGA
1 GGGA
7253921 TTATATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (31 bp):
GGGACAATATTACAAACGAACTAAATGTTGA
Found at i:7278813 original size:5 final size:5
Alignment explanation
Indices: 7278803--7278840 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
7278793 CGCCCTATCT
7278803 AGTCC AGTCC AGTCC AGTCC AGTCC AGTCC AGTCC AGT
1 AGTCC AGTCC AGTCC AGTCC AGTCC AGTCC AGTCC AGT
7278841 TCCGTTGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.37, G:0.21, T:0.21
Consensus pattern (5 bp):
AGTCC
Found at i:7280115 original size:3 final size:3
Alignment explanation
Indices: 7280107--7280140 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7280097 GAAGGTCCCC
7280107 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7280141 TGCGGAGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7281429 original size:109 final size:109
Alignment explanation
Indices: 7281238--7281456 Score: 438
Period size: 109 Copynumber: 2.0 Consensus size: 109
7281228 AAGTGTTTAG
7281238 GTGTTGCATTACTCGGAAACAAATCATGTTTATTTAAAAAAAATCGTGTTCGTGATGTAGTAACC
1 GTGTTGCATTACTCGGAAACAAATCATGTTTATTTAAAAAAAATCGTGTTCGTGATGTAGTAACC
7281303 TGTGAAGAGGAGTGGGATTGGGCCTTTTTGAGCCAATGGTTTTT
66 TGTGAAGAGGAGTGGGATTGGGCCTTTTTGAGCCAATGGTTTTT
7281347 GTGTTGCATTACTCGGAAACAAATCATGTTTATTTAAAAAAAATCGTGTTCGTGATGTAGTAACC
1 GTGTTGCATTACTCGGAAACAAATCATGTTTATTTAAAAAAAATCGTGTTCGTGATGTAGTAACC
7281412 TGTGAAGAGGAGTGGGATTGGGCCTTTTTGAGCCAATGGTTTTT
66 TGTGAAGAGGAGTGGGATTGGGCCTTTTTGAGCCAATGGTTTTT
7281456 G
1 G
7281457 ATCTATTGGT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (109 bp):
GTGTTGCATTACTCGGAAACAAATCATGTTTATTTAAAAAAAATCGTGTTCGTGATGTAGTAACC
TGTGAAGAGGAGTGGGATTGGGCCTTTTTGAGCCAATGGTTTTT
Found at i:7281656 original size:18 final size:19
Alignment explanation
Indices: 7281624--7281661 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7281614 TGTTATAGCT
*
7281624 TTAATTAATGTTATA-AAA
1 TTAATTAATGGTATATAAA
*
7281642 TTAATTATTGGTATATAAA
1 TTAATTAATGGTATATAAA
7281661 T
1 T
7281662 ATTTGTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (19 bp):
TTAATTAATGGTATATAAA
Found at i:7284522 original size:204 final size:204
Alignment explanation
Indices: 7284174--7284579 Score: 748
Period size: 201 Copynumber: 2.0 Consensus size: 204
7284164 CGACTCAACC
7284174 TTGAGGTAAGAGTTCGTAACCTAAGCCATTAGGAATATGTAATAGTTAATATGAAGTAAAAAGTA
1 TTGAGGTAAGAGTTCGTAACCTAAGCCATTAGGAATATGTAATAGTTAATATGAAGTAAAAAGTA
7284239 ATAAGAAAATTGATAGAAAAATTGGGAAAAAGTAAATACTCATCCGCACGACTAACTGACGTTCA
66 ATAAGAAAATTGATAGAAAAATTGGGAAAAAGTAAATACTCATCCGCACGACTAACTGACGTTCA
7284304 TCGTTCTTCTTGTAA-TTCTGT-ATAGTTTGCAGCAATATGACGGACACAA-AACGATGTTGAAC
131 TCGTTCTTCTTGTAATTTCTGTAATAGTTTGCAGCAATATGACGGACACAATAACGATGTTGAAC
7284366 ATGTGGACT
196 ATGTGGACT
7284375 TTGAGGTAAGAGTTCGTAACCTAAGCCATTAGGAATATGTAATAGTTAATATGAAGTATAAATAA
1 TTGAGGTAAGAGTTCGTAACCTAAGCCATTAGGAATATGTAATAGTTAATATGAAG--TAAA-AA
7284440 GTAATAAG-AAATTGATAGAAAAATTGGGAAAAAGTAACATACTCATCCGCACGACTAACTGACG
63 GTAATAAGAAAATTGATAGAAAAATTGGGAAAAAGTAA-ATACTCATCCGCACGACTAACTGACG
7284504 TTCATCGTTCTTCTTGTAATTTCTGTAATAGTTTGCAGCAATATGACGGACACAATAACGATGTT
127 TTCATCGTTCTTCTTGTAATTTCTGTAATAGTTTGCAGCAATATGACGGACACAATAACGATGTT
7284569 GAACATGTGGA
192 GAACATGTGGA
7284580 GGTCTATACA
Statistics
Matches: 198, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
201 56 0.28
203 33 0.17
204 55 0.28
205 6 0.03
206 28 0.14
207 20 0.10
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (204 bp):
TTGAGGTAAGAGTTCGTAACCTAAGCCATTAGGAATATGTAATAGTTAATATGAAGTAAAAAGTA
ATAAGAAAATTGATAGAAAAATTGGGAAAAAGTAAATACTCATCCGCACGACTAACTGACGTTCA
TCGTTCTTCTTGTAATTTCTGTAATAGTTTGCAGCAATATGACGGACACAATAACGATGTTGAAC
ATGTGGACT
Found at i:7285484 original size:31 final size:31
Alignment explanation
Indices: 7285449--7285591 Score: 250
Period size: 31 Copynumber: 4.6 Consensus size: 31
7285439 TCCATAGATT
*
7285449 CCGAAGAACCTAGGTAAACAATCCATATGTC
1 CCGAAGAACATAGGTAAACAATCCATATGTC
*
7285480 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAATCCATATGTC
*
7285511 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAATCCATATGTC
*
7285542 CCGAATAACATAGGTAAACAATCCATATGTC
1 CCGAAGAACATAGGTAAACAATCCATATGTC
7285573 CCGAAGAACATAGGTAAAC
1 CCGAAGAACATAGGTAAAC
7285592 CCTCAACCCT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAACAATCCATATGTC
Found at i:7286240 original size:92 final size:94
Alignment explanation
Indices: 7286083--7286267 Score: 356
Period size: 92 Copynumber: 2.0 Consensus size: 94
7286073 CACCTTAGCT
7286083 TTGCTTTGATTCGATTCTAATCCTTCAGTTGATTCGGAATGGGATCACGTTCTATATCTACATAA
1 TTGCTTTGATTCGATTCTAATCCTTCAGTTGATTCGGAATGGGATCACGTTCTATATCTACATAA
7286148 TCA-ATAT-GATCTATATCAGTATCATAC
66 TCATATATAGATCTATATCAGTATCATAC
7286175 TTGCTTTGATTCGATTCTAATCCTTCAGTTGATTCGGAATGGGATCACGTTCTATATCTACATAA
1 TTGCTTTGATTCGATTCTAATCCTTCAGTTGATTCGGAATGGGATCACGTTCTATATCTACATAA
7286240 TCATATATAGATCTATATCAGTATCATA
66 TCATATATAGATCTATATCAGTATCATA
7286268 ACTAATATAC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
92 68 0.75
93 4 0.04
94 19 0.21
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (94 bp):
TTGCTTTGATTCGATTCTAATCCTTCAGTTGATTCGGAATGGGATCACGTTCTATATCTACATAA
TCATATATAGATCTATATCAGTATCATAC
Found at i:7286532 original size:64 final size:64
Alignment explanation
Indices: 7286396--7286539 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 64
7286386 TATTATTGCT
* * * *
7286396 GAGATGCATCGATGCACTCCTTATGCATCGATGCACCGATTGCATTCGATGTTTCACTATTAAT
1 GAGATGCATCGATGCACTACTTATGAATAGATGCACCGATTGCATTCGATGTTTCACTATTAAA
* * * *
7286460 GGGATGCATCGATGCACTACTTATGAATAGATGCA-TGAATTGCATTCGATGTCTTTA-TTTTAA
1 GAGATGCATCGATGCACTACTTATGAATAGATGCACCG-ATTGCATTCGATGT-TTCACTATTAA
7286523 A
64 A
7286524 -AGAGTGCATCGATGCA
1 GAGA-TGCATCGATGCA
7286540 TTACCAATGC
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
63 3 0.04
64 62 0.91
65 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (64 bp):
GAGATGCATCGATGCACTACTTATGAATAGATGCACCGATTGCATTCGATGTTTCACTATTAAA
Found at i:7286617 original size:21 final size:21
Alignment explanation
Indices: 7286591--7286646 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
7286581 TTAACCTTGA
7286591 TGCATCGATGCACTATGAATG
1 TGCATCGATGCACTATGAATG
7286612 TGCATCGATGCACTATGAATG
1 TGCATCGATGCACTATGAATG
7286633 TGCATCGATGCACT
1 TGCATCGATGCACT
7286647 CTGCCCAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (21 bp):
TGCATCGATGCACTATGAATG
Found at i:7290598 original size:64 final size:64
Alignment explanation
Indices: 7290462--7290602 Score: 180
Period size: 64 Copynumber: 2.2 Consensus size: 64
7290452 TATTATTGCT
* * *
7290462 GAGATGCATCGATGCACTCCTTATGCATCGATGCACCGATTGCATTCGATGTTTCACTATTAAT
1 GAGATGCATCGATACACTACTTATGCATCGATGCACCGATTGCATTCGATGTTTCACTATTAAA
* * *
7290526 GGGATGCATCGATACACTACTTATGCATCGATGCA-CGAATTGCATTCGATGTCTTTA-TTTTAA
1 GAGATGCATCGATACACTACTTATGCATCGATGCACCG-ATTGCATTCGATGT-TTCACTATTAA
7290589 A
64 A
7290590 -AGAGTGCATCGAT
1 GAGA-TGCATCGAT
7290603 GCATTACCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
63 4 0.06
64 60 0.90
65 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (64 bp):
GAGATGCATCGATACACTACTTATGCATCGATGCACCGATTGCATTCGATGTTTCACTATTAAA
Found at i:7291748 original size:27 final size:27
Alignment explanation
Indices: 7291710--7291764 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7291700 TTGCTTGACA
7291710 AATAATGTTGGATTCCAAGTTGGGATG
1 AATAATGTTGGATTCCAAGTTGGGATG
7291737 AATAATGTTGGATTCCAAGTTGGGATG
1 AATAATGTTGGATTCCAAGTTGGGATG
7291764 A
1 A
7291765 TCCTGGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (27 bp):
AATAATGTTGGATTCCAAGTTGGGATG
Found at i:7292967 original size:8 final size:8
Alignment explanation
Indices: 7292954--7292996 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
7292944 CTCATTTTCA
7292954 GAGAATTT
1 GAGAATTT
7292962 GAGAATTT
1 GAGAATTT
*
7292970 -AGAGTTT
1 GAGAATTT
7292977 GAGAATTT
1 GAGAATTT
7292985 GAGAATTT
1 GAGAATTT
7292993 GAGA
1 GAGA
7292997 GCTTGTGAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (8 bp):
GAGAATTT
Found at i:7292979 original size:15 final size:16
Alignment explanation
Indices: 7292954--7292996 Score: 70
Period size: 15 Copynumber: 2.8 Consensus size: 16
7292944 CTCATTTTCA
7292954 GAGAATTTGAGAATTT
1 GAGAATTTGAGAATTT
*
7292970 -AGAGTTTGAGAATTT
1 GAGAATTTGAGAATTT
7292985 GAGAATTTGAGA
1 GAGAATTTGAGA
7292997 GCTTGTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (16 bp):
GAGAATTTGAGAATTT
Found at i:7293303 original size:128 final size:128
Alignment explanation
Indices: 7293075--7293809 Score: 1274
Period size: 128 Copynumber: 5.7 Consensus size: 128
7293065 ACTATTCACA
* *
7293075 TGAAGTCGCGTTCCCGGGGGTGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
7293140 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
* * * *
7293203 TGAAGGCGTGTTCCCGGGGGCACGCATTCCATTATTTTGTCAGAGAATATGTTATCATTACCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
7293268 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTATCAAGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
7293331 TGAAGGCGCGTTCCCGGGGGCGTGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
7293396 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
* *
7293459 TGAAGGCGCGTTCCCGGGGGCACGCCTTCCATTATTTTGTCATAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
7293524 TTATGTCACTCATGTCCCTCGGGGACACTAGAT-ATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTA-TTCATATCAGTACCTATTATTTCTCAGGGGACT
*
7293587 TGAAGACGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
7293652 TTATATCACTCATGTCCCTCAGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
* * * *
7293715 TGAAGGCGCTTTCCCGGGGGTGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTTCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
7293780 TTATGTCACTCATGTCCCTCGAGGACACTA
66 TTATGTCACTCATGTCCCTCGGGGACACTA
7293810 GATGGATTGT
Statistics
Matches: 572, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.00
128 570 1.00
129 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.34
Consensus pattern (128 bp):
TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
Found at i:7294213 original size:34 final size:33
Alignment explanation
Indices: 7294174--7294280 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
7294164 TAAGTTGAAA
*
7294174 TTTAATGTTAAATTTCGAATACTATAATTTATAT
1 TTTAAT-TTAAATTTCGAATAATATAATTTATAT
* * *
7294208 TTTAATTATAAATTTTGAATAATATTATTTTTATT
1 TTTAATT-TAAATTTCGAATAATATAATTTATA-T
* *
7294243 TTTATTTTAAATTTCGAATAATATAATTTGTAT
1 TTTAATTTAAATTTCGAATAATATAATTTATAT
7294276 TTTAA
1 TTTAA
7294281 AAACATTTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
33 6 0.10
34 49 0.79
35 7 0.11
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (33 bp):
TTTAATTTAAATTTCGAATAATATAATTTATAT
Found at i:7294832 original size:21 final size:20
Alignment explanation
Indices: 7294808--7294873 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 20
7294798 TAAAACCCTA
*
7294808 CGGGCTAGGCATGTAACCTGG
1 CGGGCTAGGAATGTAACCT-G
7294829 CGGGCTAGGAATGTAACCCTG
1 CGGGCTAGGAATGTAA-CCTG
*
7294850 CGGGCTCGGAATGTAACCCTG
1 CGGGCTAGGAATGTAA-CCTG
7294871 CGG
1 CGG
7294874 AGATGGCATA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
21 39 0.93
22 3 0.07
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.18
Consensus pattern (20 bp):
CGGGCTAGGAATGTAACCTG
Found at i:7298362 original size:365 final size:365
Alignment explanation
Indices: 7297682--7298701 Score: 1452
Period size: 366 Copynumber: 2.8 Consensus size: 365
7297672 TGGGCGCGTG
* * * * * **
7297682 AGTTTACCGGTTGAGAAGTATATGTACTGATGCATTTCTTGTGGCACTGCATTTTACAAATTACA
1 AGTTTACCTGTTGAGAAGTATATGTCCTGATGCACTTCTCGTTGCACCACATTTTACAAATTACA
* * * * * *
7297747 ATAGATCATTTACATTTC-CCCTTCTAGTGTTTTGTTTTCTTTTCAAAAGAAAGTATTTATTTGA
66 ATAGGTCATTT-C-TTTCACCCTTCCAGTCTTTTGTTTTCTTTTTAAAACAAA-TAATTATTTGA
* * * * ** *
7297811 TCTGATTTGTGCATTTAGTGTGCCTTGCTGCTTCAAATTCTGAAGCCATGGCTTACCATTTTTTT
128 TCTGATTTATGTATTTAGTGTGCCTTGTTGCTTCAAAATCTGAAGCCGGGGC-T--CACTTTTTT
* * * * * * *
7297876 CTAAATGGAAATAAACGATGCCCCCATATCCCTTCAAGGGAATCGTTTTCATCTATGTTCATCCT
190 CTAGATGGAAATAAAAGATGGCCCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCT
* * * * * * * *
7297941 GATATGAGTTTAAGTAACAAATTAATTCATCAAATGACATTTATGACTTTTAAATTGTGTTGCAA
255 AATATGAGTTTAAATATCTAATTAATTCATCAAATGACAGTTATGACTTCTAAATTGTGGTACAA
7298006 AGCTAGGGCGCATGATGCTTACACTTGATCTCTGAACTTCAGGT-A
320 AGCTAGGGCGCATGATGCTTACACTTGATCTCTGAACTTCAGGTAA
* *
7298051 AGTTTACCTGTTGAGAAGTATATATCCTGATGCACTTCTCATTGCACCACATTTTACAAATTACA
1 AGTTTACCTGTTGAGAAGTATATGTCCTGATGCACTTCTCGTTGCACCACATTTTACAAATTACA
* *
7298116 ATAGGTCATGTTCTTTCATCCTTCCAGTCTTTTGTTTTATTTTTAAAACAAATAATTATTTGATC
66 ATAGGTCAT-TTCTTTCACCCTTCCAGTCTTTTGTTTTCTTTTTAAAACAAATAATTATTTGATC
* * *
7298181 TGATTTATGTATTTAGTGTGCCTTGTTGCTCCAAAAGCTGAAGCTGGGGCTCACTTTTTTCTAGA
130 TGATTTATGTATTTAGTGTGCCTTGTTGCTTCAAAATCTGAAGCCGGGGCTCACTTTTTTCTAGA
7298246 TGGAAATAAAAGATGGCCCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCTAATAT
195 TGGAAATAAAAGATGGCCCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCTAATAT
*
7298311 GAGTTTAAATATCTAATTAATTCATCAAATGATAGTTATGACTTCTAAATTGTGGTACAAAGCTA
260 GAGTTTAAATATCTAATTAATTCATCAAATGACAGTTATGACTTCTAAATTGTGGTACAAAGCTA
7298376 GGGCGCATGATGCTTACACTTGATCTCTGAACTTCAGGTAA
325 GGGCGCATGATGCTTACACTTGATCTCTGAACTTCAGGTAA
* * * *
7298417 AGTTTGCCTGTTGATAAGTATATGTCCTTATGCACTTCTCGTTGCACCACATGTTACAAATTACA
1 AGTTTACCTGTTGAGAAGTATATGTCCTGATGCACTTCTCGTTGCACCACATTTTACAAATTACA
* *
7298482 ATAGGCCATTTTCTTTCACCCTTCCAGTCTTTTGTTTTCTTTTTAAAACAAATAATTAATTGATC
66 ATAGGTCA-TTTCTTTCACCCTTCCAGTCTTTTGTTTTCTTTTTAAAACAAATAATTATTTGATC
* ** *
7298547 TGATTTATGTATTTTGCATGCCTTGTTGCTTCAAAATCTGAAGCCGGGACTCACTTTTTTTCTAG
130 TGATTTATGTATTTAGTGTGCCTTGTTGCTTCAAAATCTGAAGCCGGGGCTCAC-TTTTTTCTAG
7298612 ATGGAAATAAAAGATGG-CCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCTAATA
194 ATGGAAATAAAAGATGGCCCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCTAATA
*
7298676 TGAGTTTAAATATTTAATTAATTCAT
259 TGAGTTTAAATATCTAATTAATTCAT
7298702 TCAATAACAG
Statistics
Matches: 585, Mismatches: 61, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
365 166 0.28
366 238 0.41
367 29 0.05
368 57 0.10
369 93 0.16
370 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (365 bp):
AGTTTACCTGTTGAGAAGTATATGTCCTGATGCACTTCTCGTTGCACCACATTTTACAAATTACA
ATAGGTCATTTCTTTCACCCTTCCAGTCTTTTGTTTTCTTTTTAAAACAAATAATTATTTGATCT
GATTTATGTATTTAGTGTGCCTTGTTGCTTCAAAATCTGAAGCCGGGGCTCACTTTTTTCTAGAT
GGAAATAAAAGATGGCCCCATATCCATACAAGGGAATCTTTTTCATCCATGTTCATCCTAATATG
AGTTTAAATATCTAATTAATTCATCAAATGACAGTTATGACTTCTAAATTGTGGTACAAAGCTAG
GGCGCATGATGCTTACACTTGATCTCTGAACTTCAGGTAA
Found at i:7300453 original size:15 final size:13
Alignment explanation
Indices: 7300423--7300448 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7300413 CAATTAGAAA
7300423 AAATAATATTTTT
1 AAATAATATTTTT
7300436 AAATAATATTTTT
1 AAATAATATTTTT
7300449 TTAAAAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATAATATTTTT
Found at i:7301999 original size:2 final size:2
Alignment explanation
Indices: 7301992--7302022 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7301982 AATACATGTG
7301992 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7302023 GTTTGTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7322775 original size:22 final size:23
Alignment explanation
Indices: 7322749--7322800 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
7322739 CATTCTGAAT
7322749 AAAAATGTCA-TTTTTTTGCTGA
1 AAAAATGTCATTTTTTTTGCTGA
7322771 AAAAATGTCATTTTTTTTGCTGA
1 AAAAATGTCATTTTTTTTGCTGA
*
7322794 GAAAATG
1 AAAAATG
7322801 AAAATTAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (23 bp):
AAAAATGTCATTTTTTTTGCTGA
Found at i:7327160 original size:21 final size:21
Alignment explanation
Indices: 7327136--7327176 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7327126 AGACAATAAA
7327136 ATTATATTTAAAAAAATTATC
1 ATTATATTTAAAAAAATTATC
7327157 ATTATATTTAAAAAAATTAT
1 ATTATATTTAAAAAAATTAT
7327177 AAAAACAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTATATTTAAAAAAATTATC
Found at i:7327273 original size:23 final size:21
Alignment explanation
Indices: 7327240--7327282 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
7327230 AATAAAATTT
7327240 TAATAAATTAAATAACTATTTTA
1 TAATAAATT-AATAA-TATTTTA
*
7327263 TAATAACTTAATAATATTTT
1 TAATAAATTAATAATATTTT
7327283 GTGATCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 5 0.26
23 8 0.42
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATAAATTAATAATATTTTA
Found at i:7327951 original size:19 final size:20
Alignment explanation
Indices: 7327927--7327971 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
7327917 AAGGAATTAA
7327927 AATAATCAAAT-TAAAAAAT
1 AATAATCAAATCTAAAAAAT
* *
7327946 AATAATTAAATCTATAAAAT
1 AATAATCAAATCTAAAAAAT
7327966 ATATAA
1 A-ATAA
7327972 AATATGTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 10 0.45
20 8 0.36
21 4 0.18
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (20 bp):
AATAATCAAATCTAAAAAAT
Found at i:7329956 original size:101 final size:101
Alignment explanation
Indices: 7329779--7329971 Score: 278
Period size: 101 Copynumber: 1.9 Consensus size: 101
7329769 TATAGAAACA
* * *
7329779 TAAGTTTTAATATAATAACCATAGCAAAGTGCTTGACGTGGGATGGCCTGACCAAATATGAGAAT
1 TAAGTTTTAATATAATAACCACAGCAAAGTGCTTGAAGTGGGATGGCCTGACCAAATATGAAAAT
* *
7329844 ATAAAGAGAAGGAAATTTTATTATCTCAATATCAGT
66 ACAAAGAGAAGGAAATTTTATAATCTCAATATCAGT
* * * * *
7329880 TAAGTTTTAATATAATAATCACAGGAAGGTGCTTGAAGTGGGATGTCCTGACCAAATTTGAAAAT
1 TAAGTTTTAATATAATAACCACAGCAAAGTGCTTGAAGTGGGATGGCCTGACCAAATATGAAAAT
* *
7329945 GCAAAGGGAAGGAAATTTTATAATCTC
66 ACAAAGAGAAGGAAATTTTATAATCTC
7329972 TACATTGGTT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (101 bp):
TAAGTTTTAATATAATAACCACAGCAAAGTGCTTGAAGTGGGATGGCCTGACCAAATATGAAAAT
ACAAAGAGAAGGAAATTTTATAATCTCAATATCAGT
Found at i:7336683 original size:39 final size:38
Alignment explanation
Indices: 7336602--7336702 Score: 98
Period size: 39 Copynumber: 2.6 Consensus size: 38
7336592 ACTCTTGGGA
* * * *
7336602 TCTTCTCAATTTACCTGAATATGTCATACAGTCGTAGGG
1 TCTTCTC-ATTTGCCTGAAGACGTCATACAGTCGTAGAG
7336641 TCTTCTTCATTTGCCTGAAGACGTCATACAGTCGT-GAAG
1 TCTTC-TCATTTGCCTGAAGACGTCATACAGTCGTAG-AG
*
7336680 TCTTCAT-ATTTAGCTTGAAGACG
1 TCTTC-TCATTT-GCCTGAAGACG
7336703 CGTGAAACAC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
38 5 0.09
39 46 0.87
40 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (38 bp):
TCTTCTCATTTGCCTGAAGACGTCATACAGTCGTAGAG
Found at i:7339272 original size:6 final size:6
Alignment explanation
Indices: 7339262--7339303 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
7339252 TCTATGATCT
*
7339262 TCCTAT TCCTAA TCCTAA TCCTAA TCCTAA TCCTAA TTCCTA
1 TCCTAA TCCTAA TCCTAA TCCTAA TCCTAA TCCTAA -TCCTA
7339304 CCCACCATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (6 bp):
TCCTAA
Found at i:7346101 original size:21 final size:21
Alignment explanation
Indices: 7346075--7346119 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7346065 GATTTCTGGG
* *
7346075 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
7346096 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
7346117 CAA
1 CAA
7346120 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:7346783 original size:18 final size:18
Alignment explanation
Indices: 7346760--7346794 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7346750 CTAGGAGATT
7346760 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
7346778 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
7346795 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:7346928 original size:2 final size:2
Alignment explanation
Indices: 7346921--7346962 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7346911 CAGATTAGAT
7346921 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7346963 GAAATAATAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7347887 original size:149 final size:149
Alignment explanation
Indices: 7347707--7348010 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
7347697 GAGTCGAGGG
7347707 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
*
7347772 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTTCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
7347837 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
7347856 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
7347921 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
7347986 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
7348005 TCTACG
1 TCTACG
7348011 GGGCACTTCG
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:7348033 original size:23 final size:23
Alignment explanation
Indices: 7347989--7348033 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7347979 ATCATTATAT
*
7347989 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
7348012 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
7348034 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:7358613 original size:6 final size:6
Alignment explanation
Indices: 7358602--7358675 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
7358592 CGAAAATTTA
* ** * *
7358602 AAAATT AAAATT AAAATTT AAAAACT CGACTC AAAA-T AAAA-T AAAATT
1 AAAATT AAAATT AAAA-TT -AAAATT AAAATT AAAATT AAAATT AAAATT
7358650 AAAATATT AAAATT AAAATT AAAATT
1 -AAA-ATT AAAATT AAAATT AAAATT
7358676 TTAAAAGTAG
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 9 0.17
6 28 0.53
7 9 0.17
8 7 0.13
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:7358619 original size:20 final size:20
Alignment explanation
Indices: 7358594--7358681 Score: 78
Period size: 20 Copynumber: 4.5 Consensus size: 20
7358584 CTTAATTGCG
7358594 AAAATTTAAAAATTAAAATT
1 AAAATTTAAAAATTAAAATT
* ** * *
7358614 AAAATTTAAAAACTCGACTC
1 AAAATTTAAAAATTAAAATT
7358634 AAAA--T-AAAA-TAAAATT
1 AAAATTTAAAAATTAAAATT
7358650 AAAATATT-AAAATTAAAATT
1 AAAAT-TTAAAAATTAAAATT
7358670 AAAATTTTAAAA
1 AAAA-TTTAAAA
7358682 GTAGTAAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
16 7 0.13
17 4 0.08
18 1 0.02
19 5 0.09
20 32 0.60
21 4 0.08
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.31
Consensus pattern (20 bp):
AAAATTTAAAAATTAAAATT
Found at i:7359743 original size:3 final size:3
Alignment explanation
Indices: 7359730--7359787 Score: 64
Period size: 3 Copynumber: 18.3 Consensus size: 3
7359720 GGCCTACAAA
*
7359730 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAAT AAT AGT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT -AAT
7359776 AAAT AAAT AAT A
1 -AAT -AAT AAT A
7359788 TTTTTTAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
2 2 0.04
3 34 0.68
4 14 0.28
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:7359762 original size:16 final size:16
Alignment explanation
Indices: 7359730--7359787 Score: 75
Period size: 16 Copynumber: 3.6 Consensus size: 16
7359720 GGCCTACAAA
7359730 AATAA-AATAAT-AAT
1 AATAATAATAATAAAT
7359744 AATAATAATAATAAAT
1 AATAATAATAATAAAT
*
7359760 AATAGTAATAATAAAT
1 AATAATAATAATAAAT
7359776 AAATAAATAATA
1 -AAT-AATAATA
7359788 TTTTTTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 5 0.13
15 6 0.16
16 18 0.47
17 3 0.08
18 6 0.16
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
AATAATAATAATAAAT
Found at i:7362057 original size:21 final size:21
Alignment explanation
Indices: 7362033--7362084 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7362023 GTAAATATTT
*
7362033 ATTTTAGATA-ACAAAATTAAC
1 ATTTTAGATATA-AAAAATAAC
7362054 ATTTCT-GATATAAAAAATAAC
1 ATTT-TAGATATAAAAAATAAC
*
7362075 ATTTCAGATA
1 ATTTTAGATA
7362085 CCAATCTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (21 bp):
ATTTTAGATATAAAAAATAAC
Found at i:7364824 original size:21 final size:21
Alignment explanation
Indices: 7364800--7364845 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7364790 GAGGATGGGC
*
7364800 CTCCTCTTCAGCAACCTCCGT
1 CTCCTCCTCAGCAACCTCCGT
* * *
7364821 CTCCTCCTCTGCAGCCTCTGT
1 CTCCTCCTCAGCAACCTCCGT
7364842 CTCC
1 CTCC
7364846 AATGGGCGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.50, G:0.11, T:0.30
Consensus pattern (21 bp):
CTCCTCCTCAGCAACCTCCGT
Found at i:7372291 original size:2 final size:2
Alignment explanation
Indices: 7372284--7372314 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7372274 TTAAATTCTT
7372284 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7372315 CTTAATTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7372427 original size:15 final size:16
Alignment explanation
Indices: 7372396--7372429 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7372386 AGGTGCTATC
*
7372396 TAAATCGATTGATTAA
1 TAAATCAATTGATTAA
7372412 TAAATCAATT-ATTAA
1 TAAATCAATTGATTAA
7372427 TAA
1 TAA
7372430 TATTGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (16 bp):
TAAATCAATTGATTAA
Found at i:7372582 original size:24 final size:24
Alignment explanation
Indices: 7372555--7372610 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7372545 ATATTACACA
7372555 TCAATATTTTTAGGATATTATGAT
1 TCAATATTTTTAGGATATTATGAT
* * *
7372579 TCAAAATCTTTAGGGTATTATGAT
1 TCAATATTTTTAGGATATTATGAT
7372603 TCAATATT
1 TCAATATT
7372611 AAGTCCTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (24 bp):
TCAATATTTTTAGGATATTATGAT
Found at i:7372982 original size:12 final size:12
Alignment explanation
Indices: 7372965--7373016 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
7372955 CTTCAAAGAG
7372965 ATTTTATATTTA
1 ATTTTATATTTA
7372977 ATTTTATA-TTA
1 ATTTTATATTTA
*
7372988 TATTTGAT-TTTA
1 -ATTTTATATTTA
7373000 ATTTTA-ATATTA
1 ATTTTATAT-TTA
7373012 ATTTT
1 ATTTT
7373017 TTAAATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 9 0.26
12 25 0.74
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
ATTTTATATTTA
Found at i:7373054 original size:19 final size:19
Alignment explanation
Indices: 7373030--7373112 Score: 60
Period size: 19 Copynumber: 4.2 Consensus size: 19
7373020 AATAAATTAA
7373030 ATATTATTTTTTTAATATT
1 ATATTATTTTTTTAATATT
*** * *
7373049 ATATTATAGATATAATTTT
1 ATATTATTTTTTTAATATT
*
7373068 ATATTATTTTTTAAATAAATT
1 ATATTATTTTTTTAAT--ATT
*
7373089 A-AATATTCATTTTTAATATT
1 ATATTATT--TTTTTAATATT
7373109 ATAT
1 ATAT
7373113 AGATATTTAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
19 25 0.56
20 9 0.20
21 4 0.09
22 7 0.16
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
ATATTATTTTTTTAATATT
Found at i:7373087 original size:61 final size:61
Alignment explanation
Indices: 7372978--7373130 Score: 201
Period size: 61 Copynumber: 2.5 Consensus size: 61
7372968 TTATATTTAA
7372978 TTTT-ATATTATATT-T-GATTTTAATTTTAATATTAATTTTTTAAATAAATTAAATATT-ATTT
1 TTTTAATATTATATTATAGA-TTTAATTTT-ATATTAATTTTTTAAATAAATTAAATATTCA--T
*
7373039 TTTTAATATTATATTATAGATATAATTTTATATT-ATTTTTTAAATAAATTAAATATTCAT
1 TTTTAATATTATATTATAGATTTAATTTTATATTAATTTTTTAAATAAATTAAATATTCAT
* *
7373099 TTTTAATATTATA-TAGATATTTAATTTTATAT
1 TTTTAATATTATATTATAGATTTAATTTTATAT
7373131 CATATAAATT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
59 16 0.19
60 14 0.17
61 27 0.32
62 16 0.19
63 9 0.11
64 2 0.02
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (61 bp):
TTTTAATATTATATTATAGATTTAATTTTATATTAATTTTTTAAATAAATTAAATATTCAT
Found at i:7373143 original size:24 final size:24
Alignment explanation
Indices: 7373088--7373144 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
7373078 TTAAATAAAT
* * *
7373088 TAAATATTCATTTTTAATATTATA
1 TAAATATTTAATTTTAATATCATA
*
7373112 TAGATATTTAATTTT-ATATCATA
1 TAAATATTTAATTTTAATATCATA
7373135 TAAATTATTT
1 TAAA-TATTT
7373145 TATATATTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (24 bp):
TAAATATTTAATTTTAATATCATA
Found at i:7373199 original size:20 final size:18
Alignment explanation
Indices: 7373135--7373201 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
7373125 TTATATCATA
* *
7373135 TAAATTATTTTATATATTAT
1 TAAA-TATTTTATTTAGT-T
*
7373155 TAAA-ATTTTATTTATTT
1 TAAATATTTTATTTAGTT
*
7373172 TAATTATTTTGATTTAAGTT
1 TAAATATTTT-ATTT-AGTT
7373192 TAAATATTTT
1 TAAATATTTT
7373202 TTGGATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.10
18 16 0.40
19 4 0.10
20 16 0.40
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TAAATATTTTATTTAGTT
Found at i:7373675 original size:31 final size:31
Alignment explanation
Indices: 7373640--7373699 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
7373630 TAGTTGTATG
*
7373640 AATTATTTAAAT-TTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTT-AGTATTGCAAAACTAA
7373671 AATTATTTAAATCTTAGTATTGCAAAACT
1 AATTATTTAAATCTTAGTATTGCAAAACT
7373700 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATCTTAGTATTGCAAAACTAA
Found at i:7376653 original size:37 final size:37
Alignment explanation
Indices: 7376612--7376684 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
7376602 GGCCGGCGAC
**
7376612 ATGGTAGGTCGCCATGGAGTCCCGGTGACATGGTAGA
1 ATGGTAGGTCGCCATGGAGTCCCGACGACATGGTAGA
7376649 ATGGTAGGTCGCCATGGAGTCCCGACGACATGGTAG
1 ATGGTAGGTCGCCATGGAGTCCCGACGACATGGTAG
7376685 GTCGACATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.21, G:0.37, T:0.21
Consensus pattern (37 bp):
ATGGTAGGTCGCCATGGAGTCCCGACGACATGGTAGA
Found at i:7376692 original size:13 final size:13
Alignment explanation
Indices: 7376674--7376700 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7376664 GGAGTCCCGA
7376674 CGACATGGTAGGT
1 CGACATGGTAGGT
7376687 CGACATGGTAGGT
1 CGACATGGTAGGT
7376700 C
1 C
7376701 TGTATCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.19, G:0.37, T:0.22
Consensus pattern (13 bp):
CGACATGGTAGGT
Found at i:7377241 original size:21 final size:21
Alignment explanation
Indices: 7377216--7377276 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7377206 AATCTAGTTA
*
7377216 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTATTAGTATAAATT
* *
7377237 ATTAGTTTATTAGTTTAAGTT
1 ATTAGTTTATTAGTATAAATT
7377258 ATATA-TTATATTA-TATAAA
1 AT-TAGTT-TATTAGTATAAA
7377277 AAAATTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 26 0.79
22 7 0.21
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (21 bp):
ATTAGTTTATTAGTATAAATT
Found at i:7377811 original size:24 final size:23
Alignment explanation
Indices: 7377767--7377811 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
7377757 TATTGTGTTT
*
7377767 AAAAATATTTAGTGTTGTTTAAA
1 AAAAATATTTAGTGTTATTTAAA
* *
7377790 AAAATATATTTTGTTTTATTTA
1 AAAA-ATATTTAGTGTTATTTA
7377812 TATTGTATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (23 bp):
AAAAATATTTAGTGTTATTTAAA
Found at i:7381016 original size:10 final size:10
Alignment explanation
Indices: 7381001--7381027 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7380991 AATGATTTGA
7381001 TAGTAATGAT
1 TAGTAATGAT
7381011 TAGTAATGAT
1 TAGTAATGAT
7381021 TAGTAAT
1 TAGTAAT
7381028 AATGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (10 bp):
TAGTAATGAT
Found at i:7381050 original size:32 final size:30
Alignment explanation
Indices: 7380956--7381098 Score: 101
Period size: 28 Copynumber: 5.0 Consensus size: 30
7380946 TTATAAGATT
*
7380956 TAGTAATGATTAGTAATGATGAAATTATTA
1 TAGTAATGATTAGTAATAATGAAATTATTA
* * * *
7380986 TATTTAATGATT--TGAT-A-GTAATGA-T-
1 TA-GTAATGATTAGTAATAATGAAATTATTA
7381011 TAGTAATGATTAGTAATAATGAAATTATTAA
1 TAGTAATGATTAGTAATAATGAAATTATT-A
* * * *
7381042 TATTTAATGATT--TGAT-AT-TAATGATT-
1 TA-GTAATGATTAGTAATAATGAAATTATTA
7381068 TAGTAATGATTAGTAATAATGAAATTATTA
1 TAGTAATGATTAGTAATAATGAAATTATTA
7381098 T
1 T
7381099 TAATTTTTAA
Statistics
Matches: 83, Mismatches: 16, Indels: 28
0.65 0.13 0.22
Matches are distributed among these distances:
24 8 0.10
25 10 0.12
26 6 0.07
27 9 0.11
28 14 0.17
29 12 0.14
30 6 0.07
31 10 0.12
32 8 0.10
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (30 bp):
TAGTAATGATTAGTAATAATGAAATTATTA
Found at i:7381126 original size:60 final size:60
Alignment explanation
Indices: 7380952--7381753 Score: 1010
Period size: 60 Copynumber: 14.2 Consensus size: 60
7380942 GTATTTATAA
*
7380952 GATTTAGTAATGATTAGTAATGATGAAATTATTA-T-A--TTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* *
7381008 GA-TTAGTAATGATTAGTAATAATG-AA--ATTATTAATATTTAATGATTTGATATTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381064 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381124 GA-TTAG---T-A--A-TAATAATGAAATTA-TA-TAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381174 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* * * * *
7381234 GATTTAATAATGATT--T-GTAATGAAATTGTTATTAA-TATTAATAATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* * *
7381290 GATTTAGT-A--A-T-G--ATAATGAAATTGTTA--GATATTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* * *
7381341 AATTTAGTAATGATTAGTAATAATGAAATTGTTATTAATATTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381401 GA-TTAG---T-A--A-TAAT--T-AAATTATTATTAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381450 GATTTAGT-A--A-T-G-----ATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* *
7381500 GATTTAGTACTGATTAGTAATAATGAAATCATTATTAATTTTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* * *
7381560 GATTTAATAATGATTAGTAATAATG-AATTGTTATTAATATTTAATGATTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
* *
7381619 GATTTAGTAATGATTAGTAATAATGAAATTGTTATTAATATTTAATGATTTGATCA-TAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGAT-AGTAAT
* *
7381679 GATTTAGTAATGATTAGTAATAATTAAATTATTATTAATTTTTAATGAGTTGATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
7381739 GATTTAGTAATGATT
1 GATTTAGTAATGATT
7381754 TATTATAAAT
Statistics
Matches: 665, Mismatches: 32, Indels: 94
0.84 0.04 0.12
Matches are distributed among these distances:
49 36 0.05
50 76 0.11
51 32 0.05
52 38 0.06
53 5 0.01
54 6 0.01
55 27 0.04
56 52 0.08
57 40 0.06
58 32 0.05
59 66 0.10
60 254 0.38
61 1 0.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (60 bp):
GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
Found at i:7381188 original size:110 final size:112
Alignment explanation
Indices: 7380952--7381753 Score: 823
Period size: 110 Copynumber: 7.1 Consensus size: 112
7380942 GTATTTATAA
*
7380952 GATTTAGTAATGATTAGTAATGATGAAATTATTA-T-A--TTTAATGATTTGATAGTAATGATTA
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT-
* * *
7381013 GTAATGATTAGTAATAATGAAA-T-TATTAATATTTAATGATTTGATATTAAT
65 -T-A-G--TAATAATAATGAAATTATATTAATTTTTAATGATTTGATAGTAAT
7381064 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-TT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
7381128 AGTAATAATAATGAAATTATA-TAATTTTTAATGATTTGATAGTAAT
66 AGTAATAATAATGAAATTATATTAATTTTTAATGATTTGATAGTAAT
7381174 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
* * * * *
7381239 AATAATGATTTGTAATGAAATTGTTATTAA-TATTAATAATTTGATAGTAAT
66 AGTAAT-A---ATAATGAAATT-ATATTAATTTTTAATGATTTGATAGTAAT
* * * *
7381290 GATTTAGT-A--A-T-G--ATAATGAAATTGTTA--GATATTTAATGATTTGATAGTAATAATTT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
* * * * * * * * *
7381346 AGTAATGATTAGTAATAATGAAATT-GTTATTAAT-ATTTAAT-G-ATTT
66 AGTAAT-AATAATGA-AATTATATTAATTTTTAATGATTTGATAGTA-AT
*
7381392 GA--TAGTAATGATTAGTAATAATTAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
*
7381455 AG---TAATGATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
66 AGTAATAATAATGAAATTA-TATTAATTTTTAATGATTTGATAGTAAT
* *
7381500 GATTTAGTACTGATTAGTAATAATGAAATCATTATTAATTTTTAATGATTTGATAGTAATGATTT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
* * * *
7381565 AATAATGATTAGTAATAATGAATTGTTATTAATATTTAATGATTTGATAGTAAT
66 AGTAAT-A--A-TAATGA--AATT-ATATTAATTTTTAATGATTTGATAGTAAT
* *
7381619 GATTTAGTAATGATTAGTAATAATGAAATTGTTATTAATATTTAATGATTTGATCA-TAATGATT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGAT-AGTAATGATT
* *
7381683 TAGTAATGATTAGTAATAATTAAATTATTATTAATTTTTAATGAGTTGATAGTAAT
65 TAG---T-A--A-TAATAATGAAATTA-TATTAATTTTTAATGATTTGATAGTAAT
7381739 GATTTAGTAATGATT
1 GATTTAGTAATGATT
7381754 TATTATAAAT
Statistics
Matches: 584, Mismatches: 55, Indels: 94
0.80 0.08 0.13
Matches are distributed among these distances:
100 4 0.01
101 2 0.00
102 4 0.01
103 7 0.01
104 19 0.03
105 11 0.02
106 8 0.01
107 52 0.09
108 4 0.01
109 56 0.10
110 145 0.25
111 11 0.02
112 36 0.06
113 4 0.01
114 2 0.00
115 12 0.02
116 52 0.09
117 7 0.01
119 91 0.16
120 46 0.08
122 6 0.01
123 2 0.00
125 2 0.00
126 1 0.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (112 bp):
GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTT
AGTAATAATAATGAAATTATATTAATTTTTAATGATTTGATAGTAAT
Found at i:7381610 original size:119 final size:119
Alignment explanation
Indices: 7381432--7381753 Score: 484
Period size: 119 Copynumber: 2.7 Consensus size: 119
7381422 TATTAATTTT
*
7381432 TAATGATTTGATAGTAATGATTTAGTAATGATGAAATTATTATTAATTTTTAATGATTTGATAGT
1 TAATGATTT-A-A-TAATGA-TTAGTAATAATG-AATTATTATTAATTTTTAATGATTTGATAGT
* *
7381497 AATGATTTAGTACTGATTAGTAATAATGAAATCATTATTAATTTTTAATGATTTGAT-A
61 AATGATTTAGTAATGATTAGTAATAATGAAATCATTATTAATATTTAATGATTTGATCA
* *
7381555 GTAATGATTTAATAATGATTAGTAATAATGAATTGTTATTAATATTTAATGATTTGATAGTAATG
1 -TAATGATTTAATAATGATTAGTAATAATGAATTATTATTAATTTTTAATGATTTGATAGTAATG
**
7381620 ATTTAGTAATGATTAGTAATAATGAAATTGTTATTAATATTTAATGATTTGATCA
65 ATTTAGTAATGATTAGTAATAATGAAATCATTATTAATATTTAATGATTTGATCA
* * *
7381675 TAATGATTTAGTAATGATTAGTAATAATTAAATTATTATTAATTTTTAATGAGTTGATAGTAATG
1 TAATGATTTAATAATGATTAGTAATAA-TGAATTATTATTAATTTTTAATGATTTGATAGTAATG
7381740 ATTTAGTAATGATT
65 ATTTAGTAATGATT
7381754 TATTATAAAT
Statistics
Matches: 184, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
119 108 0.59
120 59 0.32
121 6 0.03
122 1 0.01
123 1 0.01
124 9 0.05
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.46
Consensus pattern (119 bp):
TAATGATTTAATAATGATTAGTAATAATGAATTATTATTAATTTTTAATGATTTGATAGTAATGA
TTTAGTAATGATTAGTAATAATGAAATCATTATTAATATTTAATGATTTGATCA
Found at i:7383879 original size:15 final size:16
Alignment explanation
Indices: 7383859--7383892 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
7383849 CAAAAAAATT
7383859 TAATATAAT-AACTTA
1 TAATATAATAAACTTA
7383874 TAATATAATAAACTTA
1 TAATATAATAAACTTA
7383890 TAA
1 TAA
7383893 AGTAACAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATATAATAAACTTA
Found at i:7384014 original size:29 final size:30
Alignment explanation
Indices: 7383944--7384014 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
7383934 TTTCTTTAAA
*
7383944 CAACTAATAAACTATTCTTTAATATAACTT
1 CAACTAATAAAATATTCTTTAATATAACTT
*
7383974 CAACTAATAAAATATTTTTTAATTATAA-TT
1 CAACTAATAAAATATTCTTTAA-TATAACTT
*
7384004 C-ACTACTAAAA
1 CAACTAATAAAA
7384015 AACTAATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.24
30 23 0.62
31 5 0.14
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (30 bp):
CAACTAATAAAATATTCTTTAATATAACTT
Found at i:7384175 original size:14 final size:14
Alignment explanation
Indices: 7384156--7384183 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7384146 TAAATTTTTT
7384156 ACCCTAACCCTAAA
1 ACCCTAACCCTAAA
7384170 ACCCTAACCCTAAA
1 ACCCTAACCCTAAA
7384184 CTAACAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (14 bp):
ACCCTAACCCTAAA
Found at i:7384382 original size:27 final size:27
Alignment explanation
Indices: 7384352--7384403 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
7384342 CTCATATCAT
7384352 ATGCACCAATAATTGAAGAATCACGCA
1 ATGCACCAATAATTGAAGAATCACGCA
7384379 ATGCACCAATAATTGAAGAATCACG
1 ATGCACCAATAATTGAAGAATCACG
7384404 AGCCGTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.19
Consensus pattern (27 bp):
ATGCACCAATAATTGAAGAATCACGCA
Found at i:7384623 original size:29 final size:29
Alignment explanation
Indices: 7384582--7384664 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
7384572 AGCAGGGGAT
*
7384582 GTCGCCGGGCGTGCATGGCGACCTAGGAG
1 GTCGCCGGACGTGCATGGCGACCTAGGAG
7384611 GTCGCCGGACGTGCATGGCGACCTAGGAG
1 GTCGCCGGACGTGCATGGCGACCTAGGAG
* **
7384640 GTCGCTGGAATTGCATGGCGACCTA
1 GTCGCCGGACGTGCATGGCGACCTA
7384665 TGGTTGGGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.17, C:0.27, G:0.40, T:0.17
Consensus pattern (29 bp):
GTCGCCGGACGTGCATGGCGACCTAGGAG
Found at i:7384737 original size:12 final size:12
Alignment explanation
Indices: 7384720--7384746 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7384710 ACGACCCTCT
7384720 TCGGAAGCCACG
1 TCGGAAGCCACG
7384732 TCGGAAGCCACG
1 TCGGAAGCCACG
7384744 TCG
1 TCG
7384747 TAGGTCGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.11
Consensus pattern (12 bp):
TCGGAAGCCACG
Found at i:7393034 original size:107 final size:107
Alignment explanation
Indices: 7392848--7393061 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
7392838 GTAATTTAAT
7392848 TTGGAGATTATTTTTTTATCTAGGGTGAATTGTATAGTACCAACTTAAAGATTCTAGGTGTTCCA
1 TTGGAGATTATTTTTTTATCTAGGGTGAATTGTATAGTACCAACTTAAAGATTCTAGGTGTTCCA
7392913 CGCGTTTTTAAGTCAAATATAAAGACTCCACGATTGCATGAC
66 CGCGTTTTTAAGTCAAATATAAAGACTCCACGATTGCATGAC
7392955 TTGGAGATTATTTTTTTATCTAGGGTGAATTGTATAGTACCAACTTAAAGATTCTAGGTGTTCCA
1 TTGGAGATTATTTTTTTATCTAGGGTGAATTGTATAGTACCAACTTAAAGATTCTAGGTGTTCCA
7393020 CGCGTTTTTAAGTCAAATATAAAGACTCCACGATTGCATGAC
66 CGCGTTTTTAAGTCAAATATAAAGACTCCACGATTGCATGAC
7393062 ATCTTTAGAC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (107 bp):
TTGGAGATTATTTTTTTATCTAGGGTGAATTGTATAGTACCAACTTAAAGATTCTAGGTGTTCCA
CGCGTTTTTAAGTCAAATATAAAGACTCCACGATTGCATGAC
Found at i:7399879 original size:31 final size:31
Alignment explanation
Indices: 7399841--7399919 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
7399831 CCAACGTTAC
7399841 ACTTTTAGGTGTCTAAC-TTCTCTGACATTAT
1 ACTTTTAGGTGTCTAACATT-TCTGACATTAT
* *
7399872 ACTTTTAGATGTCTAACATTTCTGACGTTAT
1 ACTTTTAGGTGTCTAACATTTCTGACATTAT
* *
7399903 ACTTTTAAGTGTTTAAC
1 ACTTTTAGGTGTCTAAC
7399920 GTTAAATTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 40 0.95
32 2 0.05
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.46
Consensus pattern (31 bp):
ACTTTTAGGTGTCTAACATTTCTGACATTAT
Found at i:7400404 original size:15 final size:15
Alignment explanation
Indices: 7400381--7400420 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7400371 AAAAATAAAA
* *
7400381 TTTAATTTAAAGTTT
1 TTTATTTTAAAATTT
7400396 TTTATTTTAAAATTT
1 TTTATTTTAAAATTT
7400411 TTT-TTTTAAA
1 TTTATTTTAAA
7400421 TTTATAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (15 bp):
TTTATTTTAAAATTT
Found at i:7400888 original size:21 final size:22
Alignment explanation
Indices: 7400851--7400892 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7400841 TAGGTTCAGT
7400851 TGTTATTTTACATTTTGTTTAC
1 TGTTATTTTACATTTTGTTTAC
*
7400873 TGTTATTTT-TATTTTGTTTA
1 TGTTATTTTACATTTTGTTTA
7400893 TTACTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (22 bp):
TGTTATTTTACATTTTGTTTAC
Found at i:7402147 original size:63 final size:62
Alignment explanation
Indices: 7402041--7402212 Score: 231
Period size: 63 Copynumber: 2.8 Consensus size: 62
7402031 GCTTCCAAGT
* *
7402041 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGATAGAATCGCAATGCGATTGAGAGAG
1 TCGCAACGCGA-TTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAGAA
* * *
7402104 TCGCAACGCGATCTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGATTTATAGAA
1 TCGCAACGCGAT-TAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAGAA
* * * *
7402167 TCGCAACGCGATT-G-AGAGAATCGCAACGCGATTTAGAAAATCGCAA
1 TCGCAACGCGATTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAA
7402213 CGGTCAAAAG
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
60 27 0.28
61 1 0.01
62 2 0.02
63 68 0.69
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (62 bp):
TCGCAACGCGATTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAGAA
Found at i:7402213 original size:20 final size:20
Alignment explanation
Indices: 7402041--7402214 Score: 177
Period size: 20 Copynumber: 8.4 Consensus size: 20
7402031 GCTTCCAAGT
*
7402041 TCGCAACGCGATTTAGAAGAAAA
1 TCGCAACGCGA-TT-G-AGAGAA
* *
7402064 TCGCAATGCGATTGATAGAA
1 TCGCAACGCGATTGAGAGAA
* *
7402084 TCGCAATGCGATTGAGAGAG
1 TCGCAACGCGATTGAGAGAA
*
7402104 TCGCAACGCGATCTAGAAGAAAA
1 TCGCAACGCGAT-T-G-AGAGAA
* *
7402127 TCGCAATGCGACTGAGAGAA
1 TCGCAACGCGATTGAGAGAA
* * *
7402147 TCGCAATGCGATTTATAGAA
1 TCGCAACGCGATTGAGAGAA
7402167 TCGCAACGCGATTGAGAGAA
1 TCGCAACGCGATTGAGAGAA
* *
7402187 TCGCAACGCGATTTAGAAAA
1 TCGCAACGCGATTGAGAGAA
7402207 TCGCAACG
1 TCGCAACG
7402215 GTCAAAAGAA
Statistics
Matches: 129, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
20 98 0.76
21 3 0.02
22 4 0.03
23 24 0.19
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (20 bp):
TCGCAACGCGATTGAGAGAA
Found at i:7402313 original size:6 final size:6
Alignment explanation
Indices: 7402302--7402344 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
7402292 GACACGTATT
7402302 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
7402345 CGAGACGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.30, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:7403038 original size:10 final size:11
Alignment explanation
Indices: 7403026--7403062 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
7403016 TCTCGTCTCG
7403026 GGTCGGGTCG-
1 GGTCGGGTCGT
7403036 GGTC-GGTCGT
1 GGTCGGGTCGT
7403046 GGTCGTGGTCGT
1 GGTCG-GGTCGT
7403058 GGTCG
1 GGTCG
7403063 TGGTAATACG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 5 0.21
10 8 0.33
12 11 0.46
ACGTcount: A:0.00, C:0.19, G:0.54, T:0.27
Consensus pattern (11 bp):
GGTCGGGTCGT
Found at i:7403051 original size:6 final size:6
Alignment explanation
Indices: 7403040--7403066 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7403030 GGGTCGGGTC
7403040 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
7403067 AATACGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:7403177 original size:20 final size:20
Alignment explanation
Indices: 7403154--7403447 Score: 300
Period size: 20 Copynumber: 14.4 Consensus size: 20
7403144 TTCTTTTGAC
*
7403154 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTCTCTAAATCG
7403174 CGTTGCGATTCTCTAAATCG
1 CGTTGCGATTCTCTAAATCG
7403194 CGTTGCGATTCTCTAAATCG
1 CGTTGCGATTCTCTAAATCG
*
7403214 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTCTCTAAATCG
* *
7403234 CATTGCGATTCTATAAATCG
1 CGTTGCGATTCTCTAAATCG
* * *
7403254 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTCTCTAAATCG
* * *
7403274 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTCTCTAAATCG
* * *
7403294 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTCTCTAAATCG
* * *
7403314 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTCTCTAAATCG
* *
7403334 CATTGCGATTTTCTTCTAGATCG
1 CGTTGCGA--TTC-TCTAAATCG
* *
7403357 CGTTGCGACTCTCTCAATCG
1 CGTTGCGATTCTCTAAATCG
* *
7403377 CATTGCGATTCTATAAATCG
1 CGTTGCGATTCTCTAAATCG
* * *
7403397 CATTGCGATTCTATCAATCG
1 CGTTGCGATTCTCTAAATCG
*
7403417 CATTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TTC-TCTAAATCG
7403440 CGTTGCGA
1 CGTTGCGA
7403448 ACTTGGAAGC
Statistics
Matches: 245, Mismatches: 23, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
20 210 0.86
21 2 0.01
22 6 0.02
23 27 0.11
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (20 bp):
CGTTGCGATTCTCTAAATCG
Found at i:7403234 original size:60 final size:60
Alignment explanation
Indices: 7403156--7403447 Score: 350
Period size: 60 Copynumber: 4.8 Consensus size: 60
7403146 CTTTTGACCG
* * * * *
7403156 TTGCGATTTTCTAAATCGCGTTGCGATTCTCTAAATCGCGTTGCGATTCTCTAAATCGCG
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTAAATCGCATTGCGATTCTCTAAATCGCA
* * *
7403216 TTGCGATTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTAAATCGCATTGCGATTCTCTAAATCGCA
* * * * *
7403276 TTGCGATTCTCTCAGTCGCATTGCGATTCTCTCAGTCGCATTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTAAATCGCATTGCGATTCTCTAAATCGCA
* * * * *
7403336 TTGCGATTTTCTTCTAGATCGCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCA
1 TTGCGATTCTC-TC-A-ATCGCATTGCGATTCTCTAAATCGCATTGCGATTCTCTAAATCGCA
* *
7403399 TTGCGATTCTATCAATCGCATTGCGATTTTCTTCTAAATCGCGTTGCGA
1 TTGCGATTCTCTCAATCGCATTGCGA--TTC-TCTAAATCGCATTGCGA
7403448 ACTTGGAAGC
Statistics
Matches: 200, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
60 129 0.64
61 3 0.01
62 5 0.03
63 63 0.31
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (60 bp):
TTGCGATTCTCTCAATCGCATTGCGATTCTCTAAATCGCATTGCGATTCTCTAAATCGCA
Found at i:7403463 original size:21 final size:21
Alignment explanation
Indices: 7403437--7403489 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
7403427 TTCTTCTAAA
7403437 TCGCGTTGCGAACTTGGAAGC
1 TCGCGTTGCGAACTTGGAAGC
7403458 TCGCGTTGCGAACTTGGAAGC
1 TCGCGTTGCGAACTTGGAAGC
7403479 TCGCGTTGCGA
1 TCGCGTTGCGA
7403490 TTTTCTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.17, C:0.25, G:0.34, T:0.25
Consensus pattern (21 bp):
TCGCGTTGCGAACTTGGAAGC
Found at i:7403507 original size:20 final size:20
Alignment explanation
Indices: 7403482--7403535 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
7403472 TGGAAGCTCG
*
7403482 CGTTGCGATTTTCTTTTGAC
1 CGTTGCGATTTTCTTTTGAA
*
7403502 CGTTGCGATTTTCTTTTTAA
1 CGTTGCGATTTTCTTTTGAA
7403522 CGTTGCGATTTTCT
1 CGTTGCGATTTTCT
7403536 AAATCGCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.19, G:0.19, T:0.52
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTGAA
Found at i:7403562 original size:19 final size:20
Alignment explanation
Indices: 7403522--7403572 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
7403512 TTCTTTTTAA
*
7403522 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCGAAATCG
*
7403542 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCGAAATCG
7403561 CGTTGCGATTTT
1 CGTTGCGATTTT
7403573 ATTGGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTTCGAAATCG
Found at i:7408538 original size:42 final size:42
Alignment explanation
Indices: 7408479--7408564 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
7408469 TAATAGTTTC
7408479 AATGGGCTGGGGGTTAACATGTTTTGGGGACACGGGCTGATT
1 AATGGGCTGGGGGTTAACATGTTTTGGGGACACGGGCTGATT
*
7408521 AATGGGCTGGGGGTTAACATGTTTTGGGGATACGGGCTGATT
1 AATGGGCTGGGGGTTAACATGTTTTGGGGACACGGGCTGATT
7408563 AA
1 AA
7408565 AGGACTGTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.10, G:0.40, T:0.29
Consensus pattern (42 bp):
AATGGGCTGGGGGTTAACATGTTTTGGGGACACGGGCTGATT
Found at i:7411298 original size:271 final size:271
Alignment explanation
Indices: 7410815--7411356 Score: 1084
Period size: 271 Copynumber: 2.0 Consensus size: 271
7410805 AAAAGGGGAA
7410815 ATTGGGATGCTCTCGTCTTTATCTCCCGAAGATATGATTATCACATTAAGTTCAAGTTTGTGAAT
1 ATTGGGATGCTCTCGTCTTTATCTCCCGAAGATATGATTATCACATTAAGTTCAAGTTTGTGAAT
7410880 GTCCTATTTTGTGGTTCACTTTATGGTTTGAATCCTTTACCGAGTTTAGATGTTGAGGATGGAGA
66 GTCCTATTTTGTGGTTCACTTTATGGTTTGAATCCTTTACCGAGTTTAGATGTTGAGGATGGAGA
7410945 TACACTGCACTTAGTTGAAAGGCAGCCAGCCCAATCACAGCCTTCATCTGAAACAAGTTCAGGAG
131 TACACTGCACTTAGTTGAAAGGCAGCCAGCCCAATCACAGCCTTCATCTGAAACAAGTTCAGGAG
7411010 AGACAAATGGAAATAACAGTAATAGAGGTATGATATGTACATTGGTGCTTGCCTGGCCTGTGAAG
196 AGACAAATGGAAATAACAGTAATAGAGGTATGATATGTACATTGGTGCTTGCCTGGCCTGTGAAG
7411075 TTGAGAGCATT
261 TTGAGAGCATT
7411086 ATTGGGATGCTCTCGTCTTTATCTCCCGAAGATATGATTATCACATTAAGTTCAAGTTTGTGAAT
1 ATTGGGATGCTCTCGTCTTTATCTCCCGAAGATATGATTATCACATTAAGTTCAAGTTTGTGAAT
7411151 GTCCTATTTTGTGGTTCACTTTATGGTTTGAATCCTTTACCGAGTTTAGATGTTGAGGATGGAGA
66 GTCCTATTTTGTGGTTCACTTTATGGTTTGAATCCTTTACCGAGTTTAGATGTTGAGGATGGAGA
7411216 TACACTGCACTTAGTTGAAAGGCAGCCAGCCCAATCACAGCCTTCATCTGAAACAAGTTCAGGAG
131 TACACTGCACTTAGTTGAAAGGCAGCCAGCCCAATCACAGCCTTCATCTGAAACAAGTTCAGGAG
7411281 AGACAAATGGAAATAACAGTAATAGAGGTATGATATGTACATTGGTGCTTGCCTGGCCTGTGAAG
196 AGACAAATGGAAATAACAGTAATAGAGGTATGATATGTACATTGGTGCTTGCCTGGCCTGTGAAG
7411346 TTGAGAGCATT
261 TTGAGAGCATT
7411357 TTACTAAAAG
Statistics
Matches: 271, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
271 271 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (271 bp):
ATTGGGATGCTCTCGTCTTTATCTCCCGAAGATATGATTATCACATTAAGTTCAAGTTTGTGAAT
GTCCTATTTTGTGGTTCACTTTATGGTTTGAATCCTTTACCGAGTTTAGATGTTGAGGATGGAGA
TACACTGCACTTAGTTGAAAGGCAGCCAGCCCAATCACAGCCTTCATCTGAAACAAGTTCAGGAG
AGACAAATGGAAATAACAGTAATAGAGGTATGATATGTACATTGGTGCTTGCCTGGCCTGTGAAG
TTGAGAGCATT
Found at i:7432748 original size:21 final size:21
Alignment explanation
Indices: 7432719--7432771 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
7432709 ATTCTGACTA
7432719 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
7432740 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
7432761 TCGCAATGCGA
1 TCGCATTGCGA
7432772 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:7432786 original size:20 final size:20
Alignment explanation
Indices: 7432761--7432894 Score: 205
Period size: 20 Copynumber: 6.7 Consensus size: 20
7432751 TTTTCCTAAT
7432761 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * ** *
7432781 TCGCAACGCAAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
7432802 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
7432822 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
7432842 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
7432862 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
7432882 TCGCAATGCGAAT
1 TCGCAATGCGAAT
7432895 CTGACTATCG
Statistics
Matches: 101, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
20 87 0.86
21 14 0.14
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:7433120 original size:22 final size:22
Alignment explanation
Indices: 7433095--7433159 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
7433085 GCGACATCCG
7433095 TCCCCATCTCCGACGAAATCAA
1 TCCCCATCTCCGACGAAATCAA
* * *
7433117 TCCCCATCGCCGACGATATCAG
1 TCCCCATCTCCGACGAAATCAA
* *
7433139 TCTCCATCTCCGGCGAAATCA
1 TCCCCATCTCCGACGAAATCA
7433160 TTCACGGTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.26, C:0.40, G:0.14, T:0.20
Consensus pattern (22 bp):
TCCCCATCTCCGACGAAATCAA
Found at i:7433554 original size:20 final size:20
Alignment explanation
Indices: 7433529--7433576 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7433519 CGATTCTTGC
*
7433529 GTTGCGATAGTCAAATTCGT
1 GTTGCGATAGTCAAATTCCT
**
7433549 GTTGCGATAGTCATTTTCCT
1 GTTGCGATAGTCAAATTCCT
7433569 GTTGCGAT
1 GTTGCGAT
7433577 TTTCATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.40
Consensus pattern (20 bp):
GTTGCGATAGTCAAATTCCT
Found at i:7433582 original size:20 final size:20
Alignment explanation
Indices: 7433548--7433598 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
7433538 GTCAAATTCG
**
7433548 TGTTGCGATAGTCATTTTCC
1 TGTTGCGATTTTCATTTTCC
*
7433568 TGTTGCGATTTTCATTTTCG
1 TGTTGCGATTTTCATTTTCC
*
7433588 TATTGCGATTT
1 TGTTGCGATTT
7433599 AAAGTTTCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.14, C:0.16, G:0.20, T:0.51
Consensus pattern (20 bp):
TGTTGCGATTTTCATTTTCC
Found at i:7435465 original size:20 final size:20
Alignment explanation
Indices: 7435440--7435491 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
7435430 AGAATAGTTT
*
7435440 ACTATCGCAATGCGAAAATG
1 ACTATCGCAACGCGAAAATG
*
7435460 ACTATCGTAACGCGAAAATG
1 ACTATCGCAACGCGAAAATG
7435480 ACTATCGCAACG
1 ACTATCGCAACG
7435492 AGAGAATCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (20 bp):
ACTATCGCAACGCGAAAATG
Found at i:7435555 original size:20 final size:20
Alignment explanation
Indices: 7435530--7435572 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7435520 CAACAACAAA
7435530 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
**
7435550 ATCGCAATGCGAATTTGACT
1 ATCGCAATGCGAAAATGACT
7435570 ATC
1 ATC
7435573 ACAACGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGAAAATGACT
Found at i:7435628 original size:87 final size:87
Alignment explanation
Indices: 7435443--7435608 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
7435433 ATAGTTTACT
* * *
7435443 ATCGCAATGCGAAAATGACTATCGTAACGCGAAAATGACTATCGCAACGAGAGAATCACAATACG
1 ATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCACAACGAAAGAATCACAATACG
7435508 AAATGAAAATCGCAACAACAAA
66 AAATGAAAATCGCAACAACAAA
* ** * *
7435530 ATCGCAATGCGAAAATGACTATCGCAATGCGAATTTGACTATCACAACGAAAGAATCGCAATGCG
1 ATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCACAACGAAAGAATCACAATACG
7435595 AAATGAAAATCGCA
66 AAATGAAAATCGCA
7435609 GTGCGATTCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (87 bp):
ATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCACAACGAAAGAATCACAATACG
AAATGAAAATCGCAACAACAAA
Found at i:7435675 original size:20 final size:20
Alignment explanation
Indices: 7435623--7435689 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
7435613 GATTCTCTCG
**
7435623 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
7435643 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
* * *
7435663 TTGCAATAGTCATTTTCACG
1 TTGCGATAGTCATTTTCGCA
7435683 TTGCGAT
1 TTGCGAT
7435690 TTTATTGTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:7437741 original size:14 final size:14
Alignment explanation
Indices: 7437722--7437757 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7437712 ATTGTTTAAT
7437722 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
7437736 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
7437750 TGATTTGT
1 TGATTTGT
7437758 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7437945 original size:20 final size:18
Alignment explanation
Indices: 7437901--7437949 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 18
7437891 GCGATTCTCT
7437901 CGTTGCGATAGTCATTTC
1 CGTTGCGATAGTCATTTC
7437919 CATGTTGCGATAGTCATATTC
1 C--GTTGCGATAGTCAT-TTC
7437940 GCGTTGCGAT
1 -CGTTGCGAT
7437950 TTTCGCGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
20 22 0.81
21 3 0.11
22 1 0.04
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.37
Consensus pattern (18 bp):
CGTTGCGATAGTCATTTC
Found at i:7437956 original size:14 final size:14
Alignment explanation
Indices: 7437937--7437963 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7437927 GATAGTCATA
7437937 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
7437951 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
7437964 AGTCAAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.22, G:0.30, T:0.41
Consensus pattern (14 bp):
TTCGCGTTGCGATT
Done.