Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8285662
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 35
Found at i:7653987 original size:43 final size:40
Alignment explanation
Indices: 7653934--7654017 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 40
7653924 CTGCAATAAC
7653934 GCTATGGATGCAACACATGCAGCTACGGATGCAGGAATCTCCCA
1 GCTATGGATGCAACACATGCAGCTAC--A--CAGGAATCTCCCA
* *
7653978 GCTAT-GATGCAACGCATGCAGTTACACAGGAATCTCCCA
1 GCTATGGATGCAACACATGCAGCTACACAGGAATCTCCCA
7654017 G
1 G
7654018 AGCTTGGTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
39 14 0.37
41 1 0.03
43 18 0.47
44 5 0.13
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (40 bp):
GCTATGGATGCAACACATGCAGCTACACAGGAATCTCCCA
Found at i:7654145 original size:51 final size:51
Alignment explanation
Indices: 7654080--7654186 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
7654070 GTTCGACGTG
7654080 CATGCCCCACGCACAGTTCCCACGTCCCATGCACAACTCCCACAACTCCCC
1 CATGCCCCACGCACAGTTCCCACGTCCCATGCACAACTCCCACAACTCCCC
* *
7654131 CATGCCCCATGCACAGTTCCCACGTCCCATGCACAGCTCCCACAACTCCCC
1 CATGCCCCACGCACAGTTCCCACGTCCCATGCACAACTCCCACAACTCCCC
7654182 CATGC
1 CATGC
7654187 ATGCTCCAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.22, C:0.51, G:0.11, T:0.15
Consensus pattern (51 bp):
CATGCCCCACGCACAGTTCCCACGTCCCATGCACAACTCCCACAACTCCCC
Found at i:7654159 original size:20 final size:20
Alignment explanation
Indices: 7654136--7654173 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7654126 TCCCCCATGC
*
7654136 CCCATGCACAGTTCCCACGT
1 CCCATGCACAGCTCCCACGT
7654156 CCCATGCACAGCTCCCAC
1 CCCATGCACAGCTCCCAC
7654174 AACTCCCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.50, G:0.13, T:0.16
Consensus pattern (20 bp):
CCCATGCACAGCTCCCACGT
Found at i:7654271 original size:29 final size:29
Alignment explanation
Indices: 7654237--7654349 Score: 190
Period size: 29 Copynumber: 3.9 Consensus size: 29
7654227 CAAACCACAC
** *
7654237 AGGTCGCTTGGATGCCATGGCAACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
7654266 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
*
7654295 AGGTCGCCCGGATGCCATGGCGACCTACA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
7654324 AGGTCGCCCGGATGCCATGGCGACCT
1 AGGTCGCCCGGATGCCATGGCGACCT
7654350 ACGAGGTCAC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.16
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:7655127 original size:107 final size:105
Alignment explanation
Indices: 7654941--7655152 Score: 406
Period size: 107 Copynumber: 2.0 Consensus size: 105
7654931 GAGGAAAAGA
7654941 AGGAAAGCAAAAGAAAGGAAAAGACCCAAGGTCTAATCGATAAGTTTAAGAAGCTTGATGATTCC
1 AGGAAAGCAAAAGAAAGGAAAAGACCCAAGGTCTAATCGATAAGTTTAAGAAGCTTGATGATTCC
7655006 CTAAATGTAAATAAAGATGACCCAATTGGAGAAATAATGACC
66 CTAAATGTAAATAAAGATGA-CCAATTGGAG-AATAATGACC
7655048 AGGAAAGCAAAAGAAAGGAAAAGACCCAAGGTCTAATCGATAAGTTTAAGAAGCTTGATGATTCC
1 AGGAAAGCAAAAGAAAGGAAAAGACCCAAGGTCTAATCGATAAGTTTAAGAAGCTTGATGATTCC
7655113 CTAAATGTAAATAAAGATGACCAATTGGAGAATAATGACC
66 CTAAATGTAAATAAAGATGACCAATTGGAGAATAATGACC
7655153 TTATCTAAGA
Statistics
Matches: 105, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
105 10 0.10
106 10 0.10
107 85 0.81
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.20
Consensus pattern (105 bp):
AGGAAAGCAAAAGAAAGGAAAAGACCCAAGGTCTAATCGATAAGTTTAAGAAGCTTGATGATTCC
CTAAATGTAAATAAAGATGACCAATTGGAGAATAATGACC
Found at i:7661588 original size:27 final size:28
Alignment explanation
Indices: 7661544--7661604 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
7661534 TATTTTTTTG
*
7661544 AAAATT-TTATTTTAAAAAAT-CTTAAA
1 AAAATTATTATTTAAAAAAATCCTTAAA
*
7661570 AATATTATTATTTAAAAAAATCCTTAAA
1 AAAATTATTATTTAAAAAAATCCTTAAA
7661598 AAAATTA
1 AAAATTA
7661605 AAATTTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 5 0.17
27 13 0.43
28 12 0.40
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (28 bp):
AAAATTATTATTTAAAAAAATCCTTAAA
Found at i:7661610 original size:28 final size:27
Alignment explanation
Indices: 7661552--7661615 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
7661542 TGAAAATTTT
* * **
7661552 ATTTTAAAAAATCTTAAAAATATTATT
1 ATTTAAAAAAATCTTAAAAAAATTAAA
7661579 ATTTAAAAAAATCCTTAAAAAAATTAAA
1 ATTTAAAAAAAT-CTTAAAAAAATTAAA
*
7661607 ATTTCAAAA
1 ATTTAAAAA
7661616 GCACCCCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (27 bp):
ATTTAAAAAAATCTTAAAAAAATTAAA
Found at i:7669375 original size:17 final size:16
Alignment explanation
Indices: 7669344--7669377 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7669334 CACGTGATGA
7669344 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
7669360 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
7669377 T
1 T
7669378 ACTATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:7679616 original size:17 final size:16
Alignment explanation
Indices: 7679585--7679618 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7679575 CACGTGAGGA
7679585 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
7679601 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
7679618 T
1 T
7679619 ACTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:7697337 original size:9 final size:9
Alignment explanation
Indices: 7697314--7697348 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
7697304 TGCTGATTTG
7697314 TTTTGTTTTA
1 TTTT-TTTTA
7697324 TTTTTTTTTA
1 -TTTTTTTTA
7697334 TTTTTTTTA
1 TTTTTTTTA
7697343 TTTTTT
1 TTTTTT
7697349 AGGGGGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 5 0.21
11 4 0.17
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.89
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:7697338 original size:11 final size:10
Alignment explanation
Indices: 7697314--7697348 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7697304 TGCTGATTTG
*
7697314 TTTTGTTTTA
1 TTTTTTTTTA
7697324 TTTTTTTTTA
1 TTTTTTTTTA
7697334 -TTTTTTTTA
1 TTTTTTTTTA
7697343 TTTTTT
1 TTTTTT
7697349 AGGGGGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:7697762 original size:681 final size:670
Alignment explanation
Indices: 7695611--7698254 Score: 3924
Period size: 669 Copynumber: 4.0 Consensus size: 670
7695601 GCATTTGTGT
* *
7695611 TTCAAGTGATAACAATCAAGGTCGTCAGGTACGAGTATCACCCATTTCATGGATCAGGGTTGTAA
1 TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCAGGGTTGTAA
*
7695676 GATTTATATATATGCGATGCGTTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
66 GATTTATATATATGCGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
7695741 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACAAATAAT
131 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACAAATAAT
* * *
7695806 GTGGTTGTTGAGCATCTTGATCCTAATTCACAAGAAACAGGTCTGGTTTAGTAGCTCGACTTTTA
196 GT-GTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTA
*
7695871 TATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTA
260 TATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTG
*
7695936 TTTGCAAACTAGATAACGACCTATCATATATGTTATGCTGATTTGTTTTGTTTTA-TTTTTTATT
325 TTTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTATTTTTTTATT
* *
7696000 TTTTTAGGGGGGTT---GGGGTATTTCCTTCCCCCTTCAATCTGTTATTTCACCCATACGACAAA
390 TTTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACCTATACGACAAA
*
7696062 TGTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTATATCTGTACAGCCAT
455 TGTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATCTGTACAGCCAT
*
7696127 GTCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCTCATTCTGTACTAATGTCATAATT
520 GTCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTCTGTACTAATGTCATAATT
*
7696192 GGCCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCTTCTCTAGGATTCACTGGATCTGCT
585 GGCCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCACTGGATCTGCT
7696257 GGTATCACATAAGCATATCGA
650 GGTATCACATAAGCATATCGA
* * *
7696278 TTCAAGTGATAACAATCAAGGTCGACAGGTACAAGTATCACCCATTTCATAGATCAGGGTTGTAA
1 TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCAGGGTTGTAA
* * *
7696343 GGTTTATATATATACGATGCATTTTTGGGATGGTTTTGACAGAAATATGGTTTGGTTTCCAAATT
66 GATTTATATATATGCGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
*
7696408 AGTTACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAA-ATAAT-A
131 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACA-AATAA
7696471 TG-GTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTA
195 TGTGTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTA
*
7696535 TATTACAAACCGCAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTG
260 TATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTG
7696600 TTTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTATTTTTTTATT
325 TTTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTATTTTTTTATT
7696665 TTTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACCTATACGACAAA
390 TTTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACCTATACGACAAA
* * *
7696730 TGTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGAGCAATGAGAATAGTACATCTGTACAACCAT
455 TGTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATCTGTACAGCCAT
* * * * *
7696795 GCCATCAACTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTTTGTACTAATGTTATAATT
520 GTCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTCTGTACTAATGTCATAATT
7696860 GGCCATTA-CC-TTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCACTGGATCTGCT
585 GGCCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCACTGGATCTGCT
7696923 GGTATCACATAAGCATATCGA
650 GGTATCACATAAGCATATCGA
* * *
7696944 TTCAAGTGATAACAATCAAGGTCGTCAGGTACGACTATCACTCATTTTATGGATCAGGGTTGTAA
1 TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCAGGGTTGTAA
*
7697009 GATTTATATATATGTGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
66 GATTTATATATATGCGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
* * *
7697074 AGATACCTGAAAGCTTTCCTTGGACTGAAAATATTCATGAGAATTCAAATGAGTCAACAAATAAT
131 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACAAATAAT
* *
7697139 GTAGTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTCTGTTTTAGTAGCTCGACTTTTA
196 GT-GTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTA
*
7697204 TATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTGT-TGCTGT
260 TATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATT-TCTCCTGT
* *
7697268 GTTTGCAAAATAGATAACGGCCTATCATATATGTTCTGCTGATTTGTTTTGTTTTATTTTTTTTT
324 GTTTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTA--TTTTTTT
7697333 ATTTTTTTTATTTTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACC
387 A-------T-TTTTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACC
*
7697398 TATACGACAAATGTAAGCCTTTCCCATTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATC
444 TATACGACAAATGTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATC
* *
7697463 TGTACAGCCATGTCAACAGCTTGGTGAAAACGATGAGGTTAGTGTTCGTTCGGCATTCTGTACTA
509 TGTACAGCCATGTCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTCTGTACTA
*
7697528 ATGTCATAATTGACCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCA
574 ATGTCATAATTGGCCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCA
* *
7697593 CTAGATCTGCTGGTATCACATAAGCATAACGA
639 CTGGATCTGCTGGTATCACATAAGCATATCGA
*
7697625 TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCGGGGTTGTAA
1 TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCAGGGTTGTAA
* * * *
7697690 GGTTTATATATATGCTATGTATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGATTCCAAATT
66 GATTTATATATATGCGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
*
7697755 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAACTGAGT---CAAATAAT
131 AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACAAATAAT
* * * * *
7697817 GTG--G-T-TG---C-TGATCCTAATTCACATGAAACAAGTATGGTTTAGAAACTCAACTTTTAT
196 GTGTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTAT
* *
7697874 ATTACAAACCATAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCTTGTGT
261 ATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTGT
* * *
7697939 TTGCAGACTTGATAACGGCCTATC----A---TA---T-A--TG---T-TTTT-TTCTTTT-TTT
326 TTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTATTTTTTTATTT
*** * * * * * * *
7697985 GGGT--GGGAG-T-G-GGGGTATTTTCTT-CTCCTTAAATCTATTATGTCACCTATACGACAAAT
391 TTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACCTATACGACAAAT
* * * * * * * * *
7698044 TTAAGCCTTTCACATTTTGCAGTTAGACTTCCAGGCAATGAAAGTAGTACATCTTTGCAGGCATG
456 GTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATCTGTACAGCCATG
* * * ** * * * *
7698109 TAAAAAGCTTGGTGAAAATGATGAGGTTAGTGTCATTTCCACATTCTGCATTAATGTCAAAATTG
521 TCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTCTGTACTAATGTCATAATTG
* * * * * *
7698174 ACCATGAG-CTTTTCTTTTCCTTTTGACAACATTTCTTGCCCTCTCTAGGACTCATTGGACCTGC
586 GCCATTAGCCTTTT-TTTTTC-TTTGACAACATTTCTTGCCCTCTCTAGGATTCACTGGATCTGC
* *
7698238 CGGTGTCACATAAGCAT
649 TGGTATCACATAAGCAT
7698255 TTTGAAAAAA
Statistics
Matches: 1826, Mismatches: 126, Indels: 82
0.90 0.06 0.04
Matches are distributed among these distances:
633 5 0.00
634 153 0.08
635 66 0.04
636 1 0.00
637 1 0.00
638 4 0.00
640 3 0.00
641 1 0.00
649 6 0.00
652 4 0.00
653 1 0.00
656 2 0.00
658 1 0.00
659 1 0.00
662 1 0.00
664 176 0.10
665 24 0.01
666 253 0.14
667 188 0.10
668 175 0.10
669 298 0.16
670 2 0.00
671 8 0.00
673 1 0.00
674 1 0.00
675 1 0.00
677 1 0.00
678 11 0.01
679 192 0.11
680 2 0.00
681 243 0.13
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (670 bp):
TTCAAGTGATAACAATCAAGGTCGACAGGTACGACTATCACCCATTTCATGGATCAGGGTTGTAA
GATTTATATATATGCGATGCATTTTTGGGATGGTTCTGACAGAAATATGGTTTGGTTTCCAAATT
AGATACCTGAAAGCTTTCCTGGGACTGAAAATATTCACGAGGATTCAAATGAGTCAACAAATAAT
GTGTTGCTGAGCATCTTGATCCTAATTCACATGAAACAGGTATGGTTTAGTAGCTCGACTTTTAT
ATTACAAACCACAATCATGAAACATATTACATCTTATAGGCCCCTTGTTACCATTTCTCCTGTGT
TTGCAAACTAGATAACGGCCTATCATATATGTTATGCTGATTTGTTTTGTTTTATTTTTTTATTT
TTTTAGGGGGGTTGGAGGGGTATTTCCTTCCCCCTTCAATCTGTTGTTTCACCTATACGACAAAT
GTAAGCCTTTCCCGTTTTGCAGTTAGACTTTCGGGCAATGAAAATAGTACATCTGTACAGCCATG
TCAACAGCTTGGTGAAAACGATGAGGTTAGTGTCCGTTCCGCATTCTGTACTAATGTCATAATTG
GCCATTAGCCTTTTTTTTTCTTTGACAACATTTCTTGCCCTCTCTAGGATTCACTGGATCTGCTG
GTATCACATAAGCATATCGA
Found at i:7710080 original size:21 final size:21
Alignment explanation
Indices: 7710054--7710093 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7710044 AAACAATTGG
7710054 TAACAATTGATATCATTTTGT
1 TAACAATTGATATCATTTTGT
*
7710075 TAACAATTGATATCTTTTT
1 TAACAATTGATATCATTTT
7710094 CATTAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (21 bp):
TAACAATTGATATCATTTTGT
Found at i:7724425 original size:29 final size:29
Alignment explanation
Indices: 7724383--7724439 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
7724373 ATTGTTGGCC
7724383 GTAGGTCGCCATGC-CTTCCGGGCGACCTT
1 GTAGGTCGCCATGCAC-TCCGGGCGACCTT
7724412 GTAGGTCGCCATGCACTCCGGGCGACCT
1 GTAGGTCGCCATGCACTCCGGGCGACCT
7724440 ACCCTTGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (29 bp):
GTAGGTCGCCATGCACTCCGGGCGACCTT
Found at i:7724571 original size:33 final size:33
Alignment explanation
Indices: 7724532--7724595 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
7724522 CCTACCCTCG
*
7724532 CTCGGTTGCCCTCAGATTCCCTCGCATAGCTTT
1 CTCGGTTGCCCTCAGATGCCCTCGCATAGCTTT
*
7724565 CTCGGTTGCCCTCGGATGCCCTCGCATAGCT
1 CTCGGTTGCCCTCAGATGCCCTCGCATAGCT
7724596 CGTTCGGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.11, C:0.38, G:0.22, T:0.30
Consensus pattern (33 bp):
CTCGGTTGCCCTCAGATGCCCTCGCATAGCTTT
Found at i:7724584 original size:10 final size:10
Alignment explanation
Indices: 7724565--7724686 Score: 64
Period size: 10 Copynumber: 11.1 Consensus size: 10
7724555 GCATAGCTTT
*
7724565 CTCGGTTGCC
1 CTCGGATGCC
7724575 CTCGGATGCC
1 CTCGGATGCC
*
7724585 CTCGCATAGCTC
1 CTCGGAT-GC-C
*
7724597 GTTCGGATGGCC
1 -CTCGGAT-GCC
*
7724609 TCGGTCGGATGGC
1 -C--TCGGATGCC
*
7724622 CTCGGATGCT
1 CTCGGATGCC
*
7724632 CTCGGATGGC
1 CTCGGATGCC
*
7724642 CTCGGATGCT
1 CTCGGATGCC
*
7724652 TTCGGATGGCC
1 CTCGGAT-GCC
*
7724663 TCGGTCGGATGGC
1 -C--TCGGATGCC
7724676 CTCGGATGCC
1 CTCGGATGCC
7724686 C
1 C
7724687 AGCGTGTTGG
Statistics
Matches: 84, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
10 53 0.63
11 4 0.05
12 4 0.05
13 11 0.13
14 12 0.14
ACGTcount: A:0.09, C:0.32, G:0.34, T:0.25
Consensus pattern (10 bp):
CTCGGATGCC
Found at i:7724616 original size:14 final size:14
Alignment explanation
Indices: 7724594--7724626 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7724584 CCTCGCATAG
*
7724594 CTCGTTCGGATGGC
1 CTCGGTCGGATGGC
7724608 CTCGGTCGGATGGC
1 CTCGGTCGGATGGC
7724622 CTCGG
1 CTCGG
7724627 ATGCTCTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.30, G:0.39, T:0.24
Consensus pattern (14 bp):
CTCGGTCGGATGGC
Found at i:7724638 original size:20 final size:20
Alignment explanation
Indices: 7724613--7724666 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
7724603 ATGGCCTCGG
7724613 TCGGATGGCCTCGGATGCTC
1 TCGGATGGCCTCGGATGCTC
*
7724633 TCGGATGGCCTCGGATGCTT
1 TCGGATGGCCTCGGATGCTC
7724653 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
7724667 TCGGATGGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.09, C:0.28, G:0.37, T:0.26
Consensus pattern (20 bp):
TCGGATGGCCTCGGATGCTC
Found at i:7724669 original size:54 final size:56
Alignment explanation
Indices: 7724565--7724686 Score: 185
Period size: 54 Copynumber: 2.2 Consensus size: 56
7724555 GCATAGCTTT
*
7724565 CTCGGTTGCCCTCGGATGCCCTCGCATAGCTCGTTCGGATGGCCTCGGTCGGATGGC
1 CTCGGATGCCCTCGGATGCCCTCGCATAGCTC-TTCGGATGGCCTCGGTCGGATGGC
* * *
7724622 CTCGGATGCTCTCGGATGGCCTCGGAT-GCT-TTCGGATGGCCTCGGTCGGATGGC
1 CTCGGATGCCCTCGGATGCCCTCGCATAGCTCTTCGGATGGCCTCGGTCGGATGGC
7724676 CTCGGATGCCC
1 CTCGGATGCCC
7724687 AGCGTGTTGG
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
54 34 0.57
56 3 0.05
57 23 0.38
ACGTcount: A:0.09, C:0.32, G:0.34, T:0.25
Consensus pattern (56 bp):
CTCGGATGCCCTCGGATGCCCTCGCATAGCTCTTCGGATGGCCTCGGTCGGATGGC
Found at i:7724672 original size:14 final size:14
Alignment explanation
Indices: 7724653--7724680 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7724643 TCGGATGCTT
7724653 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
7724667 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
7724681 ATGCCCAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (14 bp):
TCGGATGGCCTCGG
Found at i:7727106 original size:21 final size:21
Alignment explanation
Indices: 7727080--7727121 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7727070 CAAGATCGAG
7727080 ACATGACGAGACTGCAAATGT
1 ACATGACGAGACTGCAAATGT
7727101 ACATGACGAGACTGCAAATGT
1 ACATGACGAGACTGCAAATGT
7727122 CAAAAGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (21 bp):
ACATGACGAGACTGCAAATGT
Found at i:7732577 original size:12 final size:12
Alignment explanation
Indices: 7732560--7732588 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7732550 ACACATAAAC
7732560 AAGTTGTTTTTG
1 AAGTTGTTTTTG
7732572 AAGTTGTTTTTG
1 AAGTTGTTTTTG
7732584 AAGTT
1 AAGTT
7732589 AGCAAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (12 bp):
AAGTTGTTTTTG
Found at i:7737850 original size:28 final size:26
Alignment explanation
Indices: 7737819--7737874 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
7737809 ACTAAATTTA
*
7737819 TATTTTTAGTAAAAATAGGTACATAAAG
1 TATTTTT-GT-AAAATAGATACATAAAG
* *
7737847 TATTTTTGTTAAATAGATACCTAAAG
1 TATTTTTGTAAAATAGATACATAAAG
7737873 TA
1 TA
7737875 CTCAAATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 2 0.08
28 7 0.28
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.39
Consensus pattern (26 bp):
TATTTTTGTAAAATAGATACATAAAG
Found at i:7737958 original size:36 final size:36
Alignment explanation
Indices: 7737911--7737980 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
7737901 AAAAATTAAC
*
7737911 ACGTGATATTAATTGAAAAATACTTTTAGTACTTAG
1 ACGTGATATTAATTGAAAAATACTTTAAGTACTTAG
*
7737947 ACGTGATATTAATTGAAGAATACTTTAAGTACTT
1 ACGTGATATTAATTGAAAAATACTTTAAGTACTT
7737981 TGATGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (36 bp):
ACGTGATATTAATTGAAAAATACTTTAAGTACTTAG
Found at i:7738288 original size:20 final size:20
Alignment explanation
Indices: 7738265--7738302 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7738255 GTATTTTGAA
7738265 AATGATGTTAATATTATTAG
1 AATGATGTTAATATTATTAG
* *
7738285 AATGGTGTTAATTTTATT
1 AATGATGTTAATATTATT
7738303 TTTAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (20 bp):
AATGATGTTAATATTATTAG
Found at i:7743740 original size:2 final size:2
Alignment explanation
Indices: 7743733--7743772 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7743723 CCTCATTATC
7743733 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7743773 GAATGCTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7748372 original size:63 final size:63
Alignment explanation
Indices: 7748242--7748377 Score: 159
Period size: 63 Copynumber: 2.2 Consensus size: 63
7748232 TCCTTAACTT
* *
7748242 GTGCATCGATGCACTAATTATGCATCGATACACAAATCATATTCGATGTTTTTATTCTAAGGG
1 GTGCATCGATGCACTAATCATGCATCGATACACAAATCATATTCGATGTTTTTATTCTAAGGA
** * * ** *
7748305 GTGCATCGATGCACTCCTCATGCATCGATGCACTAATTGTATTCGATGTTCATTTATT-TGA-GA
1 GTGCATCGATGCACTAATCATGCATCGATACACAAATCATATTCGATGTT--TTTATTCTAAGGA
7748368 GTGCATCGAT
1 GTGCATCGAT
7748378 ACACATTGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 54 0.87
64 2 0.03
65 6 0.10
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (63 bp):
GTGCATCGATGCACTAATCATGCATCGATACACAAATCATATTCGATGTTTTTATTCTAAGGA
Found at i:7755391 original size:4 final size:4
Alignment explanation
Indices: 7755384--7756456 Score: 1878
Period size: 4 Copynumber: 274.8 Consensus size: 4
7755374 TTAAACATGC
7755384 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755432 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755480 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755527 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755575 ATGT ATGT A--T ATGT ATGT A-GT ATGT ATGT ATGT A--T ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755618 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-GT ATGT ATGT ATGT
7755667 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755715 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755763 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755811 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755858 ATGT ATGT -TGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755903 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755951 ATGT ATGT ATGT ATGT -TGT A-GT ATGT ATGT A--T ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7755993 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756039 ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756085 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756133 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATAGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-GT ATGT
7756182 ATGT ATG- ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756228 ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756274 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
7756320 ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
7756366 ATAT ATGT ATGT ATGT ATGT ATAT ATGT ATGT ATGT ATAT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
7756414 ATGT ATAT ATGT ATGT ATGT ATAT ATAT ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
7756457 CGCATTTATC
Statistics
Matches: 1029, Mismatches: 10, Indels: 60
0.94 0.01 0.05
Matches are distributed among these distances:
2 20 0.02
3 24 0.02
4 977 0.95
5 8 0.01
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:7756899 original size:20 final size:20
Alignment explanation
Indices: 7756876--7756927 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
7756866 TGTTCCAAAC
*
7756876 TCGCAATGCGAATAGGTAAA
1 TCGCAACGCGAATAGGTAAA
** *
7756896 TCGCAACGATAATATGTAAA
1 TCGCAACGCGAATAGGTAAA
7756916 TCGCAACGCGAA
1 TCGCAACGCGAA
7756928 GTCAAATTCG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.19
Consensus pattern (20 bp):
TCGCAACGCGAATAGGTAAA
Found at i:7757166 original size:20 final size:20
Alignment explanation
Indices: 7757138--7757212 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
7757128 ATTTGGAAAA
* *
7757138 TCGCTACGCGAATTTCGTTT
1 TCGCAACGCGAATTTCATTT
***
7757158 TCGCAACGCG-ATTCTCCAAAA
1 TCGCAACGCGAATT-T-CATTT
7757179 TCGCAACGCGAATTTCATTT
1 TCGCAACGCGAATTTCATTT
*
7757199 TCGCAACGCTAATT
1 TCGCAACGCGAATT
7757213 ACCTATATCG
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
19 3 0.07
20 25 0.58
21 12 0.28
22 3 0.07
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (20 bp):
TCGCAACGCGAATTTCATTT
Found at i:7757328 original size:146 final size:146
Alignment explanation
Indices: 7757157--7757595 Score: 652
Period size: 146 Copynumber: 3.0 Consensus size: 146
7757147 GAATTTCGTT
*
7757157 TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATC
1 TTCGCAACGCAATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATC
* * *
7757222 GGTAATTGGCGTTGCGAAATTTGAGTTGCAAATTTGGAGAATTCGTGTTGCGATTTACATATTAT
66 GGTAATTAGCGTTGCGAAATTTGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
7757287 CGTTGCGATTTACCTA
131 CGTTGCGATTTACCTA
**
7757303 TTCGCAACGCAATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACTTTAATTACCTATATC
1 TTCGCAACGCAATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATC
*
7757368 GGTAATTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
66 GGTAATTAGCGTTGCGAAATTTGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
* *
7757433 CGTTGCGATTTGCCTC
131 CGTTGCGATTTACCTA
* *** ** * *
7757449 GT-GTTGCG-AATT-T-GGAAATCGCAACGCGAATTTCGTTTTCGCAATGCTAATTACCTATATC
1 TTCGCAACGCAATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATC
* * * *
7757510 GGTAATTAGCGTTGCGAAACTTGAGTTGCGAATTTAGAGAATTTGCGTTGTGATTTACATATTAT
66 GGTAATTAGCGTTGCGAAATTTGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
*
7757575 CGTTGCGATTTATCTA
131 CGTTGCGATTTACCTA
7757591 TTCGC
1 TTCGC
7757596 GTACTAATTA
Statistics
Matches: 263, Mismatches: 29, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
142 116 0.44
143 2 0.01
144 4 0.02
145 3 0.01
146 138 0.52
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (146 bp):
TTCGCAACGCAATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATC
GGTAATTAGCGTTGCGAAATTTGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
CGTTGCGATTTACCTA
Found at i:7758013 original size:30 final size:30
Alignment explanation
Indices: 7757979--7758037 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
7757969 TAGATTAGAA
7757979 TAAAGAATTTC-AAAGTTTGAGATTTTTTTT
1 TAAAGAATTTCAAAAGTTTGA-ATTTTTTTT
* *
7758009 TAAAGATTTTCTAAAATTTTGAATTTTTT
1 TAAAGAATTTC-AAAAGTTTGAATTTTTT
7758038 ATGTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.40
31 7 0.28
32 8 0.32
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.53
Consensus pattern (30 bp):
TAAAGAATTTCAAAAGTTTGAATTTTTTTT
Found at i:7768779 original size:146 final size:144
Alignment explanation
Indices: 7768500--7768791 Score: 541
Period size: 146 Copynumber: 2.0 Consensus size: 144
7768490 GCCTTTCTCG
7768500 ATACCTGCAACTCGTTACACAGACCACCGTTCAACGGCACAGCTACACATCAGGTATAATCTCTA
1 ATACCTGCAACTCGTTACACAGACCACCGTTCAACGG-ACAGCTACACATCAGGTATAATCTCTA
7768565 TTGGTCTCCCTCCTTTTCCTTCCTATCTTGCAAAAATAGGTTAATGATGGGAAAGTGGGAATTCT
65 TTGGTCTCCCTCCTTTTCCTTCCTATCTTGCAAAAATAGGTTAATGATGGGAAAGTGGGAATTCT
7768630 ATTTGAAAACCTTTA
130 ATTTGAAAACCTTTA
7768645 ATACCTGCAACTCGTTACACAGACCACCGTTCAACGG-CAGCTACACATCAGGTATAATTCTCTA
1 ATACCTGCAACTCGTTACACAGACCACCGTTCAACGGACAGCTACACATCAGGTATAA-TCTCTA
7768709 TTTGGTCTCCCTCCTTTTTCCTTCCTATCTTGCAAAAATAGGTTAATGATGGGAAAGTGGGAATT
65 -TTGGTCTCCCTCC-TTTTCCTTCCTATCTTGCAAAAATAGGTTAATGATGGGAAAGTGGGAATT
7768774 CTATTTGAAAACCTTTA
128 CTATTTGAAAACCTTTA
7768791 A
1 A
7768792 ATTCAACTGC
Statistics
Matches: 144, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
143 20 0.14
144 6 0.04
145 50 0.35
146 68 0.47
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (144 bp):
ATACCTGCAACTCGTTACACAGACCACCGTTCAACGGACAGCTACACATCAGGTATAATCTCTAT
TGGTCTCCCTCCTTTTCCTTCCTATCTTGCAAAAATAGGTTAATGATGGGAAAGTGGGAATTCTA
TTTGAAAACCTTTA
Found at i:7769970 original size:74 final size:72
Alignment explanation
Indices: 7769840--7770036 Score: 193
Period size: 74 Copynumber: 2.7 Consensus size: 72
7769830 TAATCTTCTC
* * * *
7769840 CAATTTAAAGCAATTTAATCGTTG---GGACTACTTTGGGAAAAAAGGGGGAAATGGATTTAAAC
1 CAATTTAAA-CAATGTAATCATTGCAAGGACTACATTGGG--AAAA-GGGG-AAGGGATTTAAAC
** *
7769902 AAATTATCAATA
61 AAAGCACCAATA
* * ** *
7769914 CAATTTAAACAATGTGATCATTGGAAGGACTATTTTCGGGAAAATGGGGAAGGGATTTAAATAAA
1 CAATTTAAACAATGTAATCATTGCAAGGACTACATT-GGGAAAA-GGGGAAGGGATTTAAACAAA
*
7769979 GCACCAATC
64 GCACCAATA
7769988 CAATTTAAACAATGTAATCATTGCAAGGACTACATTGGGAAAAGGGGAA
1 CAATTTAAACAATGTAATCATTGCAAGGACTACATTGGGAAAAGGGGAA
7770037 ATAAAAGAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
72 6 0.06
73 18 0.17
74 60 0.58
75 8 0.08
76 9 0.09
77 3 0.03
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (72 bp):
CAATTTAAACAATGTAATCATTGCAAGGACTACATTGGGAAAAGGGGAAGGGATTTAAACAAAGC
ACCAATA
Found at i:7772998 original size:13 final size:13
Alignment explanation
Indices: 7772980--7773004 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7772970 TGAAATTATA
7772980 ATTACTAATAATG
1 ATTACTAATAATG
7772993 ATTACTAATAAT
1 ATTACTAATAAT
7773005 TATTTAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
ATTACTAATAATG
Found at i:7773078 original size:16 final size:16
Alignment explanation
Indices: 7773057--7773093 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7773047 TAAATCAAAC
*
7773057 TTATAAATAGTTGAAT
1 TTATAAATAGTCGAAT
*
7773073 TTATAACTAGTCGAAT
1 TTATAAATAGTCGAAT
7773089 TTATA
1 TTATA
7773094 TTTATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (16 bp):
TTATAAATAGTCGAAT
Found at i:7773096 original size:22 final size:21
Alignment explanation
Indices: 7773070--7773122 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
7773060 TAAATAGTTG
* *
7773070 AATTTATAACTAGTCGAATTT
1 AATTTATAAATAGTCAAATTT
7773091 ATATTTATAAATAGTCAAATTT
1 A-ATTTATAAATAGTCAAATTT
7773113 AATATTATAA
1 AAT-TTATAA
7773123 TATTTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (21 bp):
AATTTATAAATAGTCAAATTT
Found at i:7774281 original size:31 final size:31
Alignment explanation
Indices: 7774223--7774282 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
7774213 GATTTAGTCA
* * *
7774223 GTGACCAAATTATAAGATTTTGTAAAGTTTG
1 GTGACCAAAGTATAAGATTTAGAAAAGTTTG
7774254 GTGACCAAAGTATAA-ACTTTAGAAAAGTT
1 GTGACCAAAGTATAAGA-TTTAGAAAAGTT
7774283 CAGGGACCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (31 bp):
GTGACCAAAGTATAAGATTTAGAAAAGTTTG
Found at i:7776974 original size:23 final size:23
Alignment explanation
Indices: 7776938--7776994 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
7776928 CATTTTATAT
* *
7776938 GGCACTAC-GTGCAACTCTACGC
1 GGCACTTCGGTGCAACTCTACAC
* *
7776960 GGCACTTCGGTGCAATTCTACAT
1 GGCACTTCGGTGCAACTCTACAC
*
7776983 GGCACTTTGGTG
1 GGCACTTCGGTG
7776995 TATTTATACG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 7 0.24
23 22 0.76
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCACTTCGGTGCAACTCTACAC
Found at i:7777722 original size:21 final size:21
Alignment explanation
Indices: 7777658--7777715 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
7777648 GACCGAAATT
*
7777658 ACTGTAACAGTGCATCAGTAC
1 ACTGTAGCAGTGCATCAGTAC
*
7777679 ACTGTAGCAGTGTATCAGTAC
1 ACTGTAGCAGTGCATCAGTAC
7777700 ACTGTAGCAGTGCATC
1 ACTGTAGCAGTGCATC
7777716 GATACACATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCAGTAC
Found at i:7787518 original size:28 final size:26
Alignment explanation
Indices: 7787487--7787570 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 26
7787477 AATGACATGG
7787487 TAAAATTTATTTTAAGCACTAAATTATA
1 TAAAATTT-TTTTAAGCACTAAATT-TA
7787515 TAAAATTTTATTT-AGCACTAAATCTTA
1 TAAAATTTT-TTTAAGCACTAAAT-TTA
* *
7787542 TATAAATTTTTTGAAGGA-TAAATTTA
1 TA-AAATTTTTTTAAGCACTAAATTTA
7787568 TAA
1 TAA
7787571 TTAACATTCG
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
25 1 0.02
26 5 0.10
27 22 0.44
28 22 0.44
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (26 bp):
TAAAATTTTTTTAAGCACTAAATTTA
Found at i:7787543 original size:27 final size:29
Alignment explanation
Indices: 7787487--7787552 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
7787477 AATGACATGG
7787487 TAAAA-TTTATTTTAAGCACTAAATTATA
1 TAAAATTTTATTTTAAGCACTAAATTATA
7787515 TAAAATTTTA-TTT-AGCACTAAATCTTATA
1 TAAAATTTTATTTTAAGCACTAAA--TTATA
*
7787544 TAAATTTTT
1 TAAAATTTT
7787553 TGAAGGATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 9 0.26
28 8 0.24
29 17 0.50
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (29 bp):
TAAAATTTTATTTTAAGCACTAAATTATA
Found at i:7787742 original size:153 final size:161
Alignment explanation
Indices: 7787583--7787905 Score: 486
Period size: 166 Copynumber: 2.0 Consensus size: 161
7787573 AACATTCGTA
*
7787583 AAATTTTTATTATTTAATGACAAAAAATGATATTTTTTAAAAAAAT-AGA-A-TAATCACCGATA
1 AAATTTTTATTATTTAATGAC-AAAAATGATAATTTTTAAAAAAATAAGACATTAATCACCGATA
7787645 ATCCAACAATACAT-AAAAA-AA-ATCATTT-AT-ATATACCTAAAAATCTAAATTTAATAATAA
65 ATCCAACAATACATAAAAAATAATATCATTTAATAATATACCTAAAAATCTAAATTTAATAATAA
7787705 AATAATTATCAAAAATAAGA-TTTC-AACTACC
130 AAT-ATTATCAAAAATAAGATTTTCAAACTACC
*
7787736 AAATTTTTATTATTTAATGACAAAAATGATAATTTTTAAAAAAATAAAGACATTTTAATTACCGA
1 AAATTTTTATTATTTAATGACAAAAATGATAATTTTTAAAAAAAT-AAGACA--TTAATCACCGA
7787801 TAATCCAACAATACATAAAAAAATAATATCATTTACGATAATATACCTAAAAATCTAAATTTAAT
63 TAATCCAACAATACAT-AAAAAATAATATCATTTA--ATAATATACCTAAAAATCTAAATTTAAT
7787866 AATAAAATATTATCAAAAATAAGATTTTCAAACTACC
125 AATAAAATATTATCAAAAATAAGATTTTCAAACTACC
7787903 AAA
1 AAA
7787906 CATGAAAATA
Statistics
Matches: 152, Mismatches: 2, Indels: 18
0.88 0.01 0.10
Matches are distributed among these distances:
152 23 0.15
153 21 0.14
154 3 0.02
155 1 0.01
158 25 0.16
160 5 0.03
161 2 0.01
162 7 0.05
165 18 0.12
166 37 0.24
167 10 0.07
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.33
Consensus pattern (161 bp):
AAATTTTTATTATTTAATGACAAAAATGATAATTTTTAAAAAAATAAGACATTAATCACCGATAA
TCCAACAATACATAAAAAATAATATCATTTAATAATATACCTAAAAATCTAAATTTAATAATAAA
ATATTATCAAAAATAAGATTTTCAAACTACC
Found at i:7798172 original size:204 final size:206
Alignment explanation
Indices: 7797822--7798229 Score: 784
Period size: 204 Copynumber: 2.0 Consensus size: 206
7797812 CGAGTATGGA
7797822 GATGGCGACAGTGAATCAACTGGAACCTGCTCACGACTCTCTCAAGTGGATAACTGATTTCCTTA
1 GATGGCGACAGTGAATCAACTGGAACCTGCTCACGACTCTCTCAAGTGGATAACTGATTTCCTTA
7797887 TAAATGCTCATCCTGAAGACAACGTGCTCTATATTCAGGTTATTATTCGGGATCTAATTGCACAA
66 TAAATGCTCATCCTGAAGACAACGTGCTCTATATTCAGGTTATTATTCGGGATCTAATTGCACAA
7797952 TCTTTTGAAAGAAAGCCTATGAAATTG-AA-ATACTTACATGTAAAGTTTTTTTCCCTTCCAACG
131 TCTTTTGAAAGAAAGCCTATGAAATTGAAATATACTTACATGTAAAGTTTTTTTCCCTTCCAACG
*
7798015 TTGTGGTAGTG
196 TTATGGTAGTG
7798026 GATGGCGACAGTGAATCAACTGGAACCTGCTCACGACTCTCTCAAGTGGATAACTGATTTCCTTA
1 GATGGCGACAGTGAATCAACTGGAACCTGCTCACGACTCTCTCAAGTGGATAACTGATTTCCTTA
*
7798091 TAAATGCTCATCCTGAAGACAACGTGCTCTATATTCAGGTTATTATTTGGGATCTAATTGCACAA
66 TAAATGCTCATCCTGAAGACAACGTGCTCTATATTCAGGTTATTATTCGGGATCTAATTGCACAA
7798156 TCTTTTGAAAGAAAGCCTATGAAATTGAAATATACTTACATGTAAAGTTTTTTTCCCTTCCAACG
131 TCTTTTGAAAGAAAGCCTATGAAATTGAAATATACTTACATGTAAAGTTTTTTTCCCTTCCAACG
7798221 TTATGGTAG
196 TTATGGTAG
7798230 GTGGGTGACC
Statistics
Matches: 200, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
204 156 0.78
205 2 0.01
206 42 0.21
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (206 bp):
GATGGCGACAGTGAATCAACTGGAACCTGCTCACGACTCTCTCAAGTGGATAACTGATTTCCTTA
TAAATGCTCATCCTGAAGACAACGTGCTCTATATTCAGGTTATTATTCGGGATCTAATTGCACAA
TCTTTTGAAAGAAAGCCTATGAAATTGAAATATACTTACATGTAAAGTTTTTTTCCCTTCCAACG
TTATGGTAGTG
Found at i:7800614 original size:13 final size:13
Alignment explanation
Indices: 7800596--7800622 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7800586 ACATAGTTAA
7800596 CAGTCTTCATATG
1 CAGTCTTCATATG
7800609 CAGTCTTCATATG
1 CAGTCTTCATATG
7800622 C
1 C
7800623 GCGTCTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:7801574 original size:2 final size:2
Alignment explanation
Indices: 7801567--7801597 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7801557 GATAAAACTA
7801567 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7801598 ATTTATGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7803102 original size:14 final size:14
Alignment explanation
Indices: 7803070--7803096 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7803060 GAATGAACAT
7803070 AAACGAACATAACG
1 AAACGAACATAACG
7803084 AAACGAACATAAC
1 AAACGAACATAAC
7803097 CGAACGTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.22, G:0.11, T:0.07
Consensus pattern (14 bp):
AAACGAACATAACG
Found at i:7807152 original size:20 final size:21
Alignment explanation
Indices: 7807127--7807186 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
7807117 TGAGACCCAA
7807127 TTCTCTCATTTTC-TATTCAT
1 TTCTCTCATTTTCTTATTCAT
*
7807147 TTCTCT-ATTTTCTTATTCTT
1 TTCTCTCATTTTCTTATTCAT
*
7807167 TTATCTCCATTTTTCTTATT
1 TTCTCT-CA-TTTTCTTATT
7807187 GTGATTGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 6 0.18
20 17 0.50
22 1 0.03
23 10 0.29
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.65
Consensus pattern (21 bp):
TTCTCTCATTTTCTTATTCAT
Found at i:7810378 original size:17 final size:18
Alignment explanation
Indices: 7810346--7810383 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
7810336 TCTTTTACTA
*
7810346 TTATATTATATTATAATT
1 TTATATTATATTATAAAT
*
7810364 TTATTTTAT-TTATAAAT
1 TTATATTATATTATAAAT
7810381 TTA
1 TTA
7810384 GTTAGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATATTATATTATAAAT
Found at i:7810523 original size:34 final size:33
Alignment explanation
Indices: 7810479--7810552 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 33
7810469 CTAAATATGT
7810479 TTTTTTTTGTCTAAACTCATTTTCCGAAACTAA
1 TTTTTTTTGTCTAAACTCATTTTCCGAAACTAA
*
7810512 TATTTTTTTGTCTAAACTCATTTTCCGAAACTCA
1 T-TTTTTTTGTCTAAACTCATTTTCCGAAACTAA
7810546 TTTTTTT
1 TTTTTTT
7810553 AATTCTGAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 7 0.18
34 32 0.82
ACGTcount: A:0.24, C:0.18, G:0.05, T:0.53
Consensus pattern (33 bp):
TTTTTTTTGTCTAAACTCATTTTCCGAAACTAA
Found at i:7813179 original size:68 final size:68
Alignment explanation
Indices: 7813062--7813198 Score: 222
Period size: 68 Copynumber: 2.0 Consensus size: 68
7813052 TCTCTGGTAT
*
7813062 AGTGACTGGGAAGAAAGCAAAACTGGAATGCATCCAAATTATAAACTTGCCCATGTTGATCAAAG
1 AGTGACTGGGAAGAAAGCAAAACTGGAATACATCCAAATTATAAACTTGCCCATGTTGATCAAAG
7813127 AAG
66 AAG
* * *
7813130 AGTGGCTGGGAAGAAAGCAAAACTGGAATATAT-CAAGATTATAACCTTGCCCATGTTGATCAAA
1 AGTGACTGGGAAGAAAGCAAAACTGGAATACATCCAA-ATTATAAACTTGCCCATGTTGATCAAA
7813194 GAAG
65 GAAG
7813198 A
1 A
7813199 AGAGTGATGA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 3 0.05
68 61 0.95
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (68 bp):
AGTGACTGGGAAGAAAGCAAAACTGGAATACATCCAAATTATAAACTTGCCCATGTTGATCAAAG
AAG
Found at i:7817592 original size:30 final size:30
Alignment explanation
Indices: 7817556--7817688 Score: 248
Period size: 30 Copynumber: 4.4 Consensus size: 30
7817546 TCTGAAGGAC
7817556 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7817586 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7817616 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7817646 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
7817676 CTTTCCATAGGTC
1 CTATCCAGAGGTC
7817689 CCGAAGAACC
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 101 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7817705 original size:60 final size:60
Alignment explanation
Indices: 7817556--7817713 Score: 235
Period size: 60 Copynumber: 2.6 Consensus size: 60
7817546 TCTGAAGGAC
*
7817556 CTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
*
7817616 CTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
* * * * * *
7817676 CTTTCCATAGGTCCCGAAGAACCTAGGTAAACTATCCA
1 CTATCCAGAGGTCACAAAGATCCTCGGT-AACTATCCA
7817714 TATATTCCTT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
60 81 0.90
61 9 0.10
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (60 bp):
CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7818379 original size:19 final size:20
Alignment explanation
Indices: 7818341--7818378 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7818331 TTTTTCATTA
*
7818341 TGGGGGAATCGGTTCCCCCT
1 TGGGGGAATCGATTCCCCCT
*
7818361 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
7818379 TCTAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCT
Found at i:7825076 original size:23 final size:23
Alignment explanation
Indices: 7825048--7825094 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7825038 TATCAATGGC
7825048 CAATAAATCTTTAAAATATACTA
1 CAATAAATCTTTAAAATATACTA
7825071 CAATAAATCTTTAAAATATACTA
1 CAATAAATCTTTAAAATATACTA
7825094 C
1 C
7825095 CTATAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (23 bp):
CAATAAATCTTTAAAATATACTA
Found at i:7835167 original size:24 final size:25
Alignment explanation
Indices: 7835107--7835201 Score: 74
Period size: 24 Copynumber: 3.8 Consensus size: 25
7835097 TCGGGCCGGG
7835107 TATATA-TATA-TATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
*
7835130 TATATATT-TTTTATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
* * *
7835154 T-T-TATTAATATTATATATATATATA
1 TATATATT-ATATTATTTAAAT-TAAA
*
7835179 TATATATATATATATATATAAAT
1 TATATAT-TATAT-TATTTAAAT
7835202 AATTATTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
22 4 0.07
23 8 0.14
24 24 0.42
25 4 0.07
26 1 0.02
27 7 0.12
28 9 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TATATATTATATTATTTAAATTAAA
Found at i:7835172 original size:2 final size:2
Alignment explanation
Indices: 7835161--7835198 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7835151 AAATTTATTA
7835161 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7835199 AATAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7838221 original size:23 final size:22
Alignment explanation
Indices: 7838189--7838245 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
7838179 TTAGATGAAG
*
7838189 AATAAAATAAAGAAAATAAATAA
1 AATAAGATAAAGAAAAT-AATAA
*
7838212 GATAAGATAAAGAAAATAATAA
1 AATAAGATAAAGAAAATAATAA
7838234 AATGAAGATAAA
1 AAT-AAGATAAA
7838246 CTATAAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 7 0.23
23 23 0.77
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.18
Consensus pattern (22 bp):
AATAAGATAAAGAAAATAATAA
Found at i:7838496 original size:10 final size:10
Alignment explanation
Indices: 7838470--7838518 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
7838460 TAATATTAAT
*
7838470 AATAAAGGAA
1 AATAAAAGAA
*
7838480 AACAAAAGAA
1 AATAAAAGAA
7838490 AATAAAAAGCAA
1 AAT-AAAAG-AA
*
7838502 AATAAAATAA
1 AATAAAAGAA
7838512 AATAAAA
1 AATAAAA
7838519 TGTATATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 19 0.58
11 9 0.27
12 5 0.15
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (10 bp):
AATAAAAGAA
Found at i:7838503 original size:22 final size:22
Alignment explanation
Indices: 7838467--7838518 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
7838457 TACTAATATT
*
7838467 AATAATAAAGGAAAACAAAAGAA
1 AATAA-AAAGCAAAACAAAAGAA
* *
7838490 AATAAAAAGCAAAATAAAATAA
1 AATAAAAAGCAAAACAAAAGAA
7838512 AATAAAA
1 AATAAAA
7838519 TGTATATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.77, C:0.04, G:0.08, T:0.12
Consensus pattern (22 bp):
AATAAAAAGCAAAACAAAAGAA
Found at i:7838508 original size:17 final size:16
Alignment explanation
Indices: 7838478--7838513 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
7838468 ATAATAAAGG
7838478 AAAACAAAAGAAAATA
1 AAAACAAAAGAAAATA
*
7838494 AAAAGCAAAATAAAATA
1 AAAA-CAAAAGAAAATA
7838511 AAA
1 AAA
7838514 TAAAATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.81, C:0.06, G:0.06, T:0.08
Consensus pattern (16 bp):
AAAACAAAAGAAAATA
Found at i:7838551 original size:2 final size:2
Alignment explanation
Indices: 7838544--7838571 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7838534 TAAATAAGAA
7838544 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7838572 TTGTAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7840426 original size:40 final size:40
Alignment explanation
Indices: 7840378--7840457 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
7840368 ATTATGAAAT
*
7840378 GATGGCAAAAGTATTTTGAAAATGAAAAGTTTTAATTAGG
1 GATGGCAAAAGTATTTTGAAAACGAAAAGTTTTAATTAGG
7840418 GATGGCAAAAGTATTTTGAAAACGAAAAGTTTTAATTAGG
1 GATGGCAAAAGTATTTTGAAAACGAAAAGTTTTAATTAGG
7840458 TATATGAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.31
Consensus pattern (40 bp):
GATGGCAAAAGTATTTTGAAAACGAAAAGTTTTAATTAGG
Found at i:7842457 original size:211 final size:211
Alignment explanation
Indices: 7842093--7842519 Score: 845
Period size: 211 Copynumber: 2.0 Consensus size: 211
7842083 ACTAAAATAT
7842093 ACTAAAATAAAATTTAAACACTAAATTCTAAATAAAAAAACAATTTATTGATACGGGATCTTTCT
1 ACTAAAATAAAATTTAAACACTAAATTCTAAATAAAAAAACAATTTATTGATACGGGATCTTTCT
7842158 TGAAGATTTTATCAAAATGATGAGGATTGTTTATTTACAATATGCATATCACGTGCATATAGTAA
66 TGAAGATTTTATCAAAATGATGAGGATTGTTTATTTACAATATGCATATCACGTGCATATAGTAA
7842223 CAAAATTATATTAATTTAATTCTATACCCTACATACATATAATATAAATTTATCAATCAATTTAT
131 CAAAATTATATTAATTTAATTCTATACCCTACATACATATAATATAAATTTATCAATCAATTTAT
7842288 TAACAATCATGCTACC
196 TAACAATCATGCTACC
7842304 ACTAAAATAAAATTTAAACACTAAATTCTAAATAAAAAAACAATTTATTGATACGGGATCTTTCT
1 ACTAAAATAAAATTTAAACACTAAATTCTAAATAAAAAAACAATTTATTGATACGGGATCTTTCT
7842369 TGAAGATTTTATCAAAATGATGAGGATTGTTTATTTACAATATGCATATCACGTGCATATAGTAA
66 TGAAGATTTTATCAAAATGATGAGGATTGTTTATTTACAATATGCATATCACGTGCATATAGTAA
*
7842434 CGAAATTATATTAATTTAATTCTATACCCTACATACATATAATATAAATTTATCAATCAATTTAT
131 CAAAATTATATTAATTTAATTCTATACCCTACATACATATAATATAAATTTATCAATCAATTTAT
7842499 TAACAATCATGCTACC
196 TAACAATCATGCTACC
7842515 ACTAA
1 ACTAA
7842520 GTTAATATGA
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
211 215 1.00
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (211 bp):
ACTAAAATAAAATTTAAACACTAAATTCTAAATAAAAAAACAATTTATTGATACGGGATCTTTCT
TGAAGATTTTATCAAAATGATGAGGATTGTTTATTTACAATATGCATATCACGTGCATATAGTAA
CAAAATTATATTAATTTAATTCTATACCCTACATACATATAATATAAATTTATCAATCAATTTAT
TAACAATCATGCTACC
Found at i:7842689 original size:2 final size:2
Alignment explanation
Indices: 7842619--7842669 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
7842609 TTACCCTAAA
7842619 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7842661 AT AT AT AT A
1 AT AT AT AT A
7842670 ACTAAAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7844083 original size:3 final size:3
Alignment explanation
Indices: 7844075--7844170 Score: 129
Period size: 3 Copynumber: 31.3 Consensus size: 3
7844065 ATTATTTATT
*
7844075 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * *
7844121 TAA TAA TAA TAT TAT TAA TAT TAA TAA TAA TATT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
7844167 TAA T
1 TAA T
7844171 TTTAAAAATG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
3 78 0.94
4 5 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:7844427 original size:45 final size:45
Alignment explanation
Indices: 7844376--7844538 Score: 191
Period size: 45 Copynumber: 3.6 Consensus size: 45
7844366 TAGGTATTAT
* * * *
7844376 AGATGACCTGGAGGATTTGAAAACATCATGCACTGAATGCCTTAC
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAATGACTTAC
* * * * * *
7844421 AAATGACCCAAAGGTTTTGAAAATATCAAGAACTAAATGACTTAC
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAATGACTTAC
* * * *
7844466 AGATAACCCGAAGGCTTTGAAAACATCATGCACTGAAGGGCTTAC
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAATGACTTAC
*
7844511 AGATGACCCGAAGGTTTTGAAAATATCA
1 AGATGACCCGAAGGTTTTGAAAACATCA
7844539 AAAAGCTATG
Statistics
Matches: 95, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 95 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (45 bp):
AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAATGACTTAC
Found at i:7844625 original size:45 final size:45
Alignment explanation
Indices: 7844556--7844743 Score: 313
Period size: 45 Copynumber: 4.2 Consensus size: 45
7844546 ATGGAAGACT
* *
7844556 TTTTGAAAATATCATGCACCGAAGGGCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
7844601 TTTTGAAAACATCATGCACTGAAGGGCTTATAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
7844646 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAATG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
* * *
7844691 TTTTGAAAACATCATACACTAAAGGTCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
7844736 TTTTGAAA
1 TTTTGAAA
7844744 GTATCAAAAA
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
Found at i:7844665 original size:166 final size:163
Alignment explanation
Indices: 7844391--7844961 Score: 540
Period size: 166 Copynumber: 3.5 Consensus size: 163
7844381 ACCTGGAGGA
* * * * * * *
7844391 TTTGAAAACATCATGCACTGAATGCCTTACAAATGACCCAAAGGTTTTGAAAATATCAAGAACTA
1 TTTGAAAACATCATGCACTGAAGGTCTTACAAATGACCCGAAGGTTTTGAAAACATCATGCACTG
* * * * *
7844456 AATGACTTACAGATAACCCGAAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
66 AAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
7844521 AAGGTTTTGAAAATATCAAAAAGCTATGGAAGACTT
131 AAGGTTTTGAAAATATCAAAAAGCTA--GAAG-CTT
* * * *
7844557 TTTGAAAATATCATGCACCGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGTCTTACAAATGACCCGAAGGTTTTGAAAACATCATGCACTG
*
7844622 AAGGGCTTATAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
66 AAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
* * * *
7844687 AATGTTTTGAAAACATCATACA-CTA-AAGGTCTT
131 AAGGTTTTGAAAATATCAAAAAGCTAGAA-G-CTT
*** ** * * *** * * * * * **
7844720 ACAGATGAC-CCGAAGGTTTTGAAAGTATCA-AAAAGCTCCCGAAGGCTTTTTGAAAACATCCCG
1 TTTGAAAACATC--ATGCACTGAAGGTCTTACAAATG-ACCCGAAGG--TTTTGAAAACATCATG
* * * * *
7844783 CACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATG
61 CACTGAAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
*
7844848 ACCCGAAGGTTTTGAAAATATCAAAAAGCTCCCGAAGGCTT
126 ACCCGAAGGTTTTGAAAATATCAAAAAGCT--AGAA-GCTT
* * ***
7844889 TTTGAAAACATCCTGCACTG-TGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGTCTTACAAATGACCCGAAGGTTTTGAAAACATCATGCACTG
*
7844953 TAGGTCTTA
66 AAGGTCTTA
7844962 AGAATGTGGG
Statistics
Matches: 320, Mismatches: 73, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
162 3 0.01
163 10 0.03
164 16 0.05
165 31 0.10
166 229 0.72
167 14 0.04
168 5 0.02
169 7 0.02
170 5 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (163 bp):
TTTGAAAACATCATGCACTGAAGGTCTTACAAATGACCCGAAGGTTTTGAAAACATCATGCACTG
AAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
AAGGTTTTGAAAATATCAAAAAGCTAGAAGCTT
Found at i:7844740 original size:211 final size:211
Alignment explanation
Indices: 7844376--7844871 Score: 668
Period size: 211 Copynumber: 2.4 Consensus size: 211
7844366 TAGGTATTAT
* * * * * *
7844376 AGATGACCTGGAGGATTTGAAAACATCATGCACTGAATGCCTTACAAATGACCCAAAGGTTTTGA
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGCCTTACAGATGACCCGAAGGTTTTGA
* * *
7844441 AAATATCAAGAACTAAATGACTTACAGATAACCCGAAGGCTTTGAAAACATCATGCACTGAAGGG
66 AAATATCAAGAACTAAAGGACTTACAGATAACCCGAAGGCTTTGAAAACATCATACACTAAAGGG
** * *
7844506 CTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTATGGAAGACTTTTTGAAAATATCAT
131 CTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTACCGAAGACTTTTTGAAAACATCAC
7844571 GCACCGAAGGGCTTAC
196 GCACCGAAGGGCTTAC
* *
7844587 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTATAGATGACCCGAAGGTTTTGA
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGCCTTACAGATGACCCGAAGGTTTTGA
* * * * * * * * *
7844652 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAATGTTTTGAAAACATCATACACTAAAGGT
66 AAATATCAAGAACTAAAGGACTTACAGATAACCCGAAGGCTTTGAAAACATCATACACTAAAGGG
* * * *
7844717 CTTACAGATGACCCGAAGGTTTTGAAAGTATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCC
131 CTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTACCGAAGACTTTTTGAAAACATCAC
* * * *
7844782 GCACTGTAGGTCTTAT
196 GCACCGAAGGGCTTAC
* * * *
7844798 GGATGACCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGA
1 AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGCCTTACAGATGACCCGAAGGTTTTGA
7844863 AAATATCAA
66 AAATATCAA
7844872 AAAGCTCCCG
Statistics
Matches: 246, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
211 246 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (211 bp):
AGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGCCTTACAGATGACCCGAAGGTTTTGA
AAATATCAAGAACTAAAGGACTTACAGATAACCCGAAGGCTTTGAAAACATCATACACTAAAGGG
CTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTACCGAAGACTTTTTGAAAACATCAC
GCACCGAAGGGCTTAC
Found at i:7844823 original size:45 final size:45
Alignment explanation
Indices: 7844757--7844870 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
7844747 TCAAAAAGCT
* * **
7844757 CCCGAAGGCTTTTTGAAAACATCCCGCACTGTAGGTCTTATGGATGA
1 CCCGAAGG--TTTTGAAAACATCACGCAATGTAGGTCTTACAGATGA
*
7844804 CCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCACGCAATGTAGGTCTTACAGATGA
*
7844849 CCCGAAGGTTTTGAAAATATCA
1 CCCGAAGGTTTTGAAAACATCA
7844871 AAAAGCTCCC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 53 0.87
47 8 0.13
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
CCCGAAGGTTTTGAAAACATCACGCAATGTAGGTCTTACAGATGA
Found at i:7844860 original size:121 final size:121
Alignment explanation
Indices: 7844638--7844961 Score: 519
Period size: 121 Copynumber: 2.7 Consensus size: 121
7844628 TTATAGATGA
* * * ** *
7844638 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAATGTTTTGAAAAC
1 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
* ** *
7844701 ATCATACACTAAAGGTCTTACAGATGACCCGAAGGTTTTGAAAGTATCAAAAAGCT
66 ATCATGCACTGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCT
*
7844757 CCCGAAGGCTTTTTGAAAACATCCCGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
1 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
*
7844822 ATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCT
66 ATCATGCACTGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCT
7844878 CCCGAAGGCTTTTTGAAAACATCCTGCACTGT-GGTCTTATGGATGACCCGAAGGTTTTGAAAAC
1 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
7844942 ATCATGCACTGTAGGTCTTA
66 ATCATGCACTGTAGGTCTTA
7844962 AGAATGTGGG
Statistics
Matches: 189, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
119 8 0.04
120 51 0.27
121 130 0.69
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (121 bp):
CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
ATCATGCACTGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGCT
Found at i:7844926 original size:75 final size:74
Alignment explanation
Indices: 7844804--7844945 Score: 214
Period size: 75 Copynumber: 1.9 Consensus size: 74
7844794 TTATGGATGA
*
7844804 CCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAATAT
1 CCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAACAT
7844869 CAAAAAGCT
66 CAAAAAGCT
* * **
7844878 CCCGAAGGCTTTTTGAAAACATCCTGCACTGT-GGTCTTATGGATGACCCGAAGGTTTTGAAAAC
1 CCCGAAGG--TTTTGAAAACATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAAC
7844942 ATCA
64 ATCA
7844946 TGCACTGTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
74 8 0.13
75 33 0.54
76 20 0.33
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (74 bp):
CCCGAAGGTTTTGAAAACATCATGCAATGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAACAT
CAAAAAGCT
Found at i:7845677 original size:22 final size:22
Alignment explanation
Indices: 7845625--7845678 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
7845615 AAAACTTTCT
*
7845625 TCTTTGAAAAGAGAATCTATCA
1 TCTTTGAAGAGAGAATCTATCA
7845647 TCTTTGAAGAGAGAATCTATCA
1 TCTTTGAAGAGAGAATCTATCA
7845669 TCTTTGAAGA
1 TCTTTGAAGA
7845679 ATGTAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (22 bp):
TCTTTGAAGAGAGAATCTATCA
Found at i:7847226 original size:77 final size:78
Alignment explanation
Indices: 7847049--7847268 Score: 277
Period size: 77 Copynumber: 2.7 Consensus size: 78
7847039 TTGCTAATAC
*
7847049 AGACATTCAAAATGCGCCAACATTCTTGA-TTCTGATTGAAATGGGCTTTCAGCATGCCCCACAT
1 AGACATTCAAAATGC-CCAACATT-TT-ATTTCTGGTTGAAATGGGCTTTCAG-ATGCCCCACAT
*
7847113 GAATCATTTCTGTTTGAATT
62 G-A-CA-TTCTGTCTGAATT
* * *
7847133 AGACATTCAAAATGCCCAACATTTTATTTCTGGTTGAAATGGACTTTCAAGATGTCCCACATG-G
1 AGACATTCAAAATGCCCAACATTTTATTTCTGGTTGAAATGGGCTTTC-AGATGCCCCACATGAC
7847197 A-TCTGTCTGAATT
65 ATTCTGTCTGAATT
7847210 AGACATTCAAAATGCCCAACATTTTATTTCT-GTATGAAATGGGCTTTCGAGATGCCCCA
1 AGACATTCAAAATGCCCAACATTTTATTTCTGGT-TGAAATGGGCTTTC-AGATGCCCCA
7847269 ATATTTGCTT
Statistics
Matches: 125, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
76 2 0.02
77 64 0.51
79 1 0.01
81 1 0.01
82 32 0.26
83 10 0.08
84 15 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (78 bp):
AGACATTCAAAATGCCCAACATTTTATTTCTGGTTGAAATGGGCTTTCAGATGCCCCACATGACA
TTCTGTCTGAATT
Found at i:7847242 original size:40 final size:39
Alignment explanation
Indices: 7847118--7847247 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 39
7847108 CACATGAATC
7847118 ATTTCTGTTTGAATTAGACATTCAAAATGCCCAACATTTT
1 ATTTCTG-TTGAATTAGACATTCAAAATGCCCAACATTTT
* * * * **
7847158 ATTTCTGGTTGAAATGGACTTTCAAGATGTCCC-ACA-TGG
1 ATTTCT-GTTGAATTAGACATTCAAAATG-CCCAACATTTT
7847197 A--TCTGTCTGAATTAGACATTCAAAATGCCCAACATTTT
1 ATTTCTGT-TGAATTAGACATTCAAAATGCCCAACATTTT
7847235 ATTTCTGTATGAA
1 ATTTCTGT-TGAA
7847248 ATGGGCTTTC
Statistics
Matches: 70, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
36 5 0.07
37 22 0.31
38 2 0.03
39 2 0.03
40 35 0.50
41 4 0.06
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (39 bp):
ATTTCTGTTGAATTAGACATTCAAAATGCCCAACATTTT
Found at i:7847265 original size:40 final size:39
Alignment explanation
Indices: 7847054--7847266 Score: 123
Period size: 40 Copynumber: 5.3 Consensus size: 39
7847044 AATACAGACA
* *
7847054 TTCAAAATGCGCCAACATTCTTGA-TTCTGATTGAAATGGGCT
1 TTCAAGATGC-CCAACATT-TT-ATTTCTG-TTGAAATGGACT
* * * * * *
7847096 TTC-AGCATGCCCCACATGAATCATTTCTGTTTGAATTAGACA
1 TTCAAG-ATGCCCAACAT--TTTATTTCTG-TTGAAATGGACT
*
7847138 TTCAAAATGCCCAACATTTTATTTCTGGTTGAAATGGACT
1 TTCAAGATGCCCAACATTTTATTTCT-GTTGAAATGGACT
** * * *
7847178 TTCAAGATGTCCC-ACA-TGGA--TCTGTCTGAATTAGACA
1 TTCAAGATG-CCCAACATTTTATTTCTGT-TGAAATGGACT
* *
7847215 TTCAAAATGCCCAACATTTTATTTCTGTATGAAATGGGCT
1 TTCAAGATGCCCAACATTTTATTTCTGT-TGAAATGGACT
*
7847255 TTCGAGATGCCC
1 TTCAAGATGCCC
7847267 CAATATTTGC
Statistics
Matches: 127, Mismatches: 32, Indels: 26
0.69 0.17 0.14
Matches are distributed among these distances:
36 5 0.04
37 22 0.17
38 2 0.02
39 2 0.02
40 49 0.39
41 12 0.09
42 34 0.27
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (39 bp):
TTCAAGATGCCCAACATTTTATTTCTGTTGAAATGGACT
Found at i:7851601 original size:15 final size:15
Alignment explanation
Indices: 7851569--7851615 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
7851559 TAAAAGTATG
*
7851569 AATGCAAA-ATG-AA
1 AATGCAAAGATGTGA
7851582 AATGCAAAGATGTGA
1 AATGCAAAGATGTGA
7851597 AATGCAAAGATGTGA
1 AATGCAAAGATGTGA
7851612 AATG
1 AATG
7851616 TAAATGCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 8 0.26
14 3 0.10
15 20 0.65
ACGTcount: A:0.51, C:0.06, G:0.23, T:0.19
Consensus pattern (15 bp):
AATGCAAAGATGTGA
Found at i:7855805 original size:3 final size:3
Alignment explanation
Indices: 7855797--7855831 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
7855787 ATTATTTATT
*
7855797 TAA TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA T
7855832 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.93
4 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:7855814 original size:16 final size:16
Alignment explanation
Indices: 7855793--7855826 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7855783 TGTAATTATT
7855793 TATTTAATAATAATAA
1 TATTTAATAATAATAA
7855809 TATTTAATAATAATAA
1 TATTTAATAATAATAA
7855825 TA
1 TA
7855827 ATAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TATTTAATAATAATAA
Found at i:7858059 original size:61 final size:61
Alignment explanation
Indices: 7857938--7858059 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
7857928 TTTAGGGTAA
** **
7857938 GTAACAAACATGCTGGTTTAACATTAGTTTTTGATACTATACACATTTATTATTTGAAACT
1 GTAACAAACATGCTGGTTTAACATTAGTTTTTGATACTATACACATTTACCATTCAAAACT
* * * * **
7857999 GTAACATATATGCTGGTTTAACCTTAGTTTTTGATACTTTATGCATTTACCATTCAAAACT
1 GTAACAAACATGCTGGTTTAACATTAGTTTTTGATACTATACACATTTACCATTCAAAACT
7858060 CTACTAACTC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (61 bp):
GTAACAAACATGCTGGTTTAACATTAGTTTTTGATACTATACACATTTACCATTCAAAACT
Found at i:7868041 original size:7 final size:7
Alignment explanation
Indices: 7868029--7868069 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
7868019 CATTGGTTTA
7868029 CATGTTG
1 CATGTTG
7868036 CATGTTG
1 CATGTTG
7868043 CATGTTG
1 CATGTTG
7868050 CATGTTG
1 CATGTTG
7868057 CATGTTG
1 CATGTTG
7868064 CATGTT
1 CATGTT
7868070 TTAGTGTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.44
Consensus pattern (7 bp):
CATGTTG
Found at i:7868473 original size:21 final size:21
Alignment explanation
Indices: 7868447--7868489 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7868437 AGGTCGCCAT
*
7868447 GCACTCCCTCTTGCTCCTCGC
1 GCACTCCCTCCTGCTCCTCGC
7868468 GCACTCCCTCCTGCTCCTCGC
1 GCACTCCCTCCTGCTCCTCGC
7868489 G
1 G
7868490 TGATTCCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.53, G:0.16, T:0.26
Consensus pattern (21 bp):
GCACTCCCTCCTGCTCCTCGC
Found at i:7870041 original size:2 final size:2
Alignment explanation
Indices: 7870034--7870093 Score: 111
Period size: 2 Copynumber: 29.5 Consensus size: 2
7870024 TAATACATAC
7870034 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7870076 AT AT AT AT AT AT GAT AT A
1 AT AT AT AT AT AT -AT AT A
7870094 ATTACTTAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 55 0.96
3 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7870888 original size:9 final size:10
Alignment explanation
Indices: 7870853--7870887 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7870843 TTTTAAATTA
7870853 AGCGGGCTTT
1 AGCGGGCTTT
7870863 AGCGGGCTTT
1 AGCGGGCTTT
7870873 AGCGGG-TTT
1 AGCGGGCTTT
*
7870882 CGCGGG
1 AGCGGG
7870888 TAGCCCGCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.09, C:0.20, G:0.46, T:0.26
Consensus pattern (10 bp):
AGCGGGCTTT
Found at i:7889859 original size:64 final size:63
Alignment explanation
Indices: 7889786--7889943 Score: 192
Period size: 64 Copynumber: 2.5 Consensus size: 63
7889776 TTGTTTAAGG
*
7889786 TGCATCGATGCACATGCAGTGCATCGATGCAT-GAATTTAAATAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCACATGCAGTGCATCGATGCATCCAA-TTAAATA-AAAACATCGAATAGGATTTA
* * * * * *
7889850 TGCATCGATGTATAAGGAGTGCATCGATGCATCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCACATGCAGTGCATCGATGCATCCAATTAAATAAAAACATCGAATAGGATTTA
** *
7889913 TGCATCGATGCATGGTGTAGTGCATCGATGC
1 TGCATCGATGCA-CATGCAGTGCATCGATGC
7889944 TACCTTCATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
63 30 0.38
64 49 0.61
65 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCACATGCAGTGCATCGATGCATCCAATTAAATAAAAACATCGAATAGGATTTA
Found at i:7891380 original size:149 final size:149
Alignment explanation
Indices: 7891193--7891507 Score: 569
Period size: 149 Copynumber: 2.1 Consensus size: 149
7891183 GAGTCGAGGG
* * *
7891193 TCTACACGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
7891258 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
7891323 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
*
7891342 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
*
7891407 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTTTTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
7891472 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
7891491 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
7891508 TGCAATTATA
Statistics
Matches: 160, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
148 1 0.01
149 159 0.99
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
TATGGCACTACGGTGCAAT
Found at i:7891508 original size:23 final size:23
Alignment explanation
Indices: 7891475--7891519 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7891465 ATTTTTATAT
*
7891475 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
7891498 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
7891520 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:7896793 original size:23 final size:23
Alignment explanation
Indices: 7896767--7896867 Score: 94
Period size: 23 Copynumber: 4.3 Consensus size: 23
7896757 CACCACAACT
*
7896767 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGTAGTGCCA
* *
7896790 CATATAATTGCACCGGAGTGCCG
1 CATATAATTGCACCGTAGTGCCA
* ** *
7896813 CGTCGAATTGCACCGTAGTGCCG
1 CATATAATTGCACCGTAGTGCCA
* * *
7896836 CGTAGAATTACACCGTAGTGCCA
1 CATATAATTGCACCGTAGTGCCA
*
7896859 TATAATAAT
1 CAT-ATAAT
7896868 GTCCATAAGG
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
23 61 0.94
24 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (23 bp):
CATATAATTGCACCGTAGTGCCA
Found at i:7897038 original size:103 final size:103
Alignment explanation
Indices: 7896897--7897187 Score: 521
Period size: 103 Copynumber: 2.8 Consensus size: 103
7896887 CATTCCTTAA
*
7896897 ATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTTACACATGTTCCAAAGAATACATAT
1 ATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
7896962 ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAT
66 ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAT
*
7897000 ATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATATAT
1 ATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
7897065 ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAT
66 ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAT
* * *
7897103 ATACATATGCCAAGGATCAAGTA-GTTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATA
1 ATACATATACTAGGGATCAAGTATG-TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATA
7897167 TATGTCCCGAAGGACCACATA
65 TATGTCCCGAAGGACCACATA
7897188 GACCCTCGAC
Statistics
Matches: 181, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
102 1 0.01
103 180 0.99
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (103 bp):
ATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAT
Found at i:7897604 original size:15 final size:16
Alignment explanation
Indices: 7897577--7897609 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7897567 TCTTATCATC
7897577 ACCATTAATCCCTTTT
1 ACCATTAATCCCTTTT
7897593 ACCATT-ATCCCTTTT
1 ACCATTAATCCCTTTT
7897608 AC
1 AC
7897610 TTACCATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.42
Consensus pattern (16 bp):
ACCATTAATCCCTTTT
Found at i:7900997 original size:21 final size:21
Alignment explanation
Indices: 7900973--7901017 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7900963 AAATGACCGG
* *
7900973 ATTAACATAATATTTTAGGTA
1 ATTAACAGAAAATTTTAGGTA
*
7900994 ATTACCAGAAAATTTTAGGTA
1 ATTAACAGAAAATTTTAGGTA
7901015 ATT
1 ATT
7901018 TTTACCGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (21 bp):
ATTAACAGAAAATTTTAGGTA
Found at i:7905564 original size:17 final size:18
Alignment explanation
Indices: 7905533--7905566 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7905523 AGGAGTGGAT
*
7905533 AATTATAAAATTTTAAAG
1 AATTATAAAAATTTAAAG
7905551 AATTA-AAAAATTTAAA
1 AATTATAAAAATTTAAA
7905567 ATATATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
AATTATAAAAATTTAAAG
Found at i:7908429 original size:22 final size:22
Alignment explanation
Indices: 7908401--7908455 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
7908391 CAGTCTACAA
7908401 GCAATCAGAAACCTTAGCAAAT
1 GCAATCAGAAACCTTAGCAAAT
7908423 GCAATCAGAAACCTTAGCAAAT
1 GCAATCAGAAACCTTAGCAAAT
7908445 GCAATCAGAAA
1 GCAATCAGAAA
7908456 ATATGTTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.47, C:0.22, G:0.15, T:0.16
Consensus pattern (22 bp):
GCAATCAGAAACCTTAGCAAAT
Found at i:7913875 original size:21 final size:21
Alignment explanation
Indices: 7913849--7913901 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
7913839 ACCTTGGTGA
*
7913849 ATCGATTCACTATGAATATGC
1 ATCGATGCACTATGAATATGC
7913870 ATCGATGCACTATGAATATGC
1 ATCGATGCACTATGAATATGC
7913891 ATCGATGCACT
1 ATCGATGCACT
7913902 TTGCCCAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (21 bp):
ATCGATGCACTATGAATATGC
Found at i:7923429 original size:35 final size:34
Alignment explanation
Indices: 7923344--7923430 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 34
7923334 ATTTTGTATT
*
7923344 TAAATACAACAAACTTACAATAAGAATTAAATGG
1 TAAATACAACAAAATTACAATAAGAATTAAATGG
* *
7923378 TAAATGATAACCAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAA--GA-ATTAAATGG
7923416 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
7923431 ACTAAAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.53
36 1 0.02
37 5 0.11
38 10 0.22
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.26
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGAATTAAATGG
Found at i:7923671 original size:18 final size:18
Alignment explanation
Indices: 7923645--7923692 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
7923635 TCCTCGCTGT
*
7923645 CATCATCGTCGTCGTCAC
1 CATCGTCGTCGTCGTCAC
7923663 CATCGTCGTCGTCGTCAC
1 CATCGTCGTCGTCGTCAC
*
7923681 CATCGTCATCGT
1 CATCGTCGTCGT
7923693 TGTCGTCGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.38, G:0.19, T:0.29
Consensus pattern (18 bp):
CATCGTCGTCGTCGTCAC
Found at i:7923692 original size:15 final size:15
Alignment explanation
Indices: 7923643--7923675 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7923633 ACTCCTCGCT
*
7923643 GTCATCATCGTCGTC
1 GTCACCATCGTCGTC
7923658 GTCACCATCGTCGTC
1 GTCACCATCGTCGTC
7923673 GTC
1 GTC
7923676 GTCACCATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.36, G:0.21, T:0.30
Consensus pattern (15 bp):
GTCACCATCGTCGTC
Found at i:7925765 original size:111 final size:111
Alignment explanation
Indices: 7925571--7925903 Score: 567
Period size: 111 Copynumber: 3.0 Consensus size: 111
7925561 ATTACAAAAA
* *
7925571 TTAATTCTTATTCTAATAATCATGCATTAAATAAATCAACTAATTATTTCTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
*
7925636 AATTAAAACGTTAAAATGTTACTGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
*
7925682 TTAATTCTTAAACTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* * * *
7925747 AATTAAAACATTAAAATGTTACCGTATCAACAAAATGTCGAGATGT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
*
7925793 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* *
7925858 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTATAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
7925904 ATGATTTCCA
Statistics
Matches: 206, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 206 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:7926060 original size:20 final size:20
Alignment explanation
Indices: 7926031--7926085 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
7926021 TAAAAAGAGG
*
7926031 GAGTATTTGAGAGAAATTTA
1 GAGTAATTGAGAGAAATTTA
*
7926051 GAGTAGTTGAGAGAAATTTA
1 GAGTAATTGAGAGAAATTTA
*
7926071 GAGAAATTGAGAGAA
1 GAGTAATTGAGAGAA
7926086 TTTGGTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (20 bp):
GAGTAATTGAGAGAAATTTA
Found at i:7926513 original size:19 final size:19
Alignment explanation
Indices: 7926489--7926532 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
7926479 ACCAACTAAA
7926489 TCGCAATGTGATCGATAAT
1 TCGCAATGTGATCGATAAT
7926508 TCGCAATGTGATCGATAAT
1 TCGCAATGTGATCGATAAT
7926527 TCGCAA
1 TCGCAA
7926533 CGCGATCTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (19 bp):
TCGCAATGTGATCGATAAT
Found at i:7926539 original size:19 final size:19
Alignment explanation
Indices: 7926498--7926539 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7926488 ATCGCAATGT
* *
7926498 GATCGATAATTCGCAATGT
1 GATCGATAATTCGCAACGC
7926517 GATCGATAATTCGCAACGC
1 GATCGATAATTCGCAACGC
7926536 GATC
1 GATC
7926540 TCCGGTATCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (19 bp):
GATCGATAATTCGCAACGC
Found at i:7926593 original size:21 final size:21
Alignment explanation
Indices: 7926567--7926610 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7926557 ATTTCCAGAT
7926567 TCACAACGCGAACTTCGACTA
1 TCACAACGCGAACTTCGACTA
7926588 TCACAACGCGAACTTCGACTA
1 TCACAACGCGAACTTCGACTA
7926609 TC
1 TC
7926611 GCATTGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.34, G:0.14, T:0.20
Consensus pattern (21 bp):
TCACAACGCGAACTTCGACTA
Found at i:7926658 original size:21 final size:21
Alignment explanation
Indices: 7926628--7926718 Score: 107
Period size: 21 Copynumber: 4.4 Consensus size: 21
7926618 AATTTACATA
*
7926628 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
7926649 TTCGCGTTGCGATAG-CCGAAG
1 TTCGCGTTGCGATAGTCC-AAG
* ** *
7926670 TTCGCATTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
7926691 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
7926710 TTCGCGTTG
1 TTCGCGTTG
7926719 AGCCTTAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
19 15 0.26
20 2 0.04
21 38 0.67
22 2 0.04
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:7927271 original size:19 final size:19
Alignment explanation
Indices: 7927247--7927287 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7927237 TCTTTTTAAA
7927247 GAACTTCGACTATCACAAC
1 GAACTTCGACTATCACAAC
* *
7927266 GAACTTGGACTATCGCAAC
1 GAACTTCGACTATCACAAC
7927285 GAA
1 GAA
7927288 TTTATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (19 bp):
GAACTTCGACTATCACAAC
Found at i:7927319 original size:23 final size:23
Alignment explanation
Indices: 7927276--7927355 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 23
7927266 GAACTTGGAC
**
7927276 TATCGCAA--CGAATTTATAATA
1 TATCGCAACGCGAATTTGGAATA
7927297 TATCGCAACGCGAATTTGGAATA
1 TATCGCAACGCGAATTTGGAATA
* * *
7927320 AATTGCAACGCGAATTTGG-A-C
1 TATCGCAACGCGAATTTGGAATA
*
7927341 TATCGCAATGCGAAT
1 TATCGCAACGCGAAT
7927356 ATGTAAATCG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 20 0.41
22 1 0.02
23 28 0.57
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (23 bp):
TATCGCAACGCGAATTTGGAATA
Found at i:7928307 original size:3 final size:3
Alignment explanation
Indices: 7928299--7928332 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7928289 ATGGGTATGC
*
7928299 AGA AGA AGA AGA AGA ACA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
7928333 TGAGGAGGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:7928350 original size:18 final size:18
Alignment explanation
Indices: 7928306--7928367 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
7928296 TGCAGAAGAA
* *
7928306 GAAGAAGAACAAGAA-GAA
1 GAAG-AGAATAAGAAGGAG
* *
7928324 GAAGAAGAATGAGGAGGAG
1 GAAG-AGAATAAGAAGGAG
7928343 GAAGAGAATAAGAAGGAG
1 GAAGAGAATAAGAAGGAG
7928361 GAAGAGA
1 GAAGAGA
7928368 GAGAAAGAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
18 31 0.84
19 6 0.16
ACGTcount: A:0.56, C:0.02, G:0.39, T:0.03
Consensus pattern (18 bp):
GAAGAGAATAAGAAGGAG
Found at i:7928614 original size:26 final size:26
Alignment explanation
Indices: 7928582--7928641 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
7928572 TCTTATTAAC
*
7928582 AAATTAACGATA-AAATGACATAATTA
1 AAATTAAC-ATATAAACGACATAATTA
* *
7928608 AAATTAA-ATATTAACGACATTATTA
1 AAATTAACATATAAACGACATAATTA
7928633 AAATTAACA
1 AAATTAACA
7928642 AAATTAAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 18 0.62
26 8 0.28
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (26 bp):
AAATTAACATATAAACGACATAATTA
Found at i:7928647 original size:18 final size:19
Alignment explanation
Indices: 7928610--7928647 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7928600 CATAATTAAA
* *
7928610 ATTAAATATTAACGACATT
1 ATTAAATATTAACAAAATT
7928629 ATTAAA-ATTAACAAAATT
1 ATTAAATATTAACAAAATT
7928647 A
1 A
7928648 AAACGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (19 bp):
ATTAAATATTAACAAAATT
Found at i:7929344 original size:20 final size:19
Alignment explanation
Indices: 7929321--7929366 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
7929311 CGATATACCA
7929321 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
7929341 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
7929361 GGTAAA
1 GGTAAA
7929367 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7929510 original size:20 final size:20
Alignment explanation
Indices: 7929487--7929534 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
7929477 CGATATAACA
*
7929487 GGTAAAATTATGATAAAACC
1 GGTAAAATAATGATAAAACC
7929507 GGTAACAA-AATGATAAAACC
1 GGTAA-AATAATGATAAAACC
7929527 GGTAAAAT
1 GGTAAAAT
7929535 GATACCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (20 bp):
GGTAAAATAATGATAAAACC
Found at i:7931811 original size:21 final size:21
Alignment explanation
Indices: 7931764--7931828 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7931754 AAGACAATCA
* *
7931764 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
7931786 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
7931806 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
7931827 AG
1 AG
7931829 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:7931904 original size:33 final size:33
Alignment explanation
Indices: 7931862--7931927 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7931852 AAATAGATGG
*
7931862 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
7931895 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
7931928 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:7933744 original size:19 final size:19
Alignment explanation
Indices: 7933720--7933768 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
7933710 AATGTCGAGT
7933720 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
7933739 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
7933758 TATTTTTGTAT
1 TAATTTTGTAT
7933769 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:7935539 original size:182 final size:182
Alignment explanation
Indices: 7935231--7935699 Score: 818
Period size: 183 Copynumber: 2.6 Consensus size: 182
7935221 CAAAGTTTTC
* * * * *
7935231 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
7935296 AAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGATTTATAATGTAATAGATAATTTGTAAT
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGTAATAGATAATTTGTAAT
7935359 ATAACCGGTAT-AAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
128 ATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
7935413 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
7935478 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAA-TTTGTAATAT
7935543 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
130 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
7935596 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
7935661 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
7935700 AGGTTATCTT
Statistics
Matches: 276, Mismatches: 7, Indels: 7
0.95 0.02 0.02
Matches are distributed among these distances:
181 35 0.13
182 91 0.33
183 147 0.53
184 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTGTAATATA
ACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
Found at i:7938834 original size:23 final size:23
Alignment explanation
Indices: 7938803--7938865 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7938793 ATAGGTAAAC
*
7938803 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
7938826 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
7938849 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
7938866 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:7938873 original size:23 final size:23
Alignment explanation
Indices: 7938803--7938875 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7938793 ATAGGTAAAC
* * **
7938803 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
7938826 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
7938849 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
7938872 ATAT
1 ATAT
7938876 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:7939264 original size:23 final size:23
Alignment explanation
Indices: 7939233--7939295 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7939223 ATAGGTAAAC
*
7939233 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
7939256 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
7939279 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
7939296 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:7939303 original size:23 final size:23
Alignment explanation
Indices: 7939233--7939305 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7939223 ATAGGTAAAC
* * **
7939233 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
7939256 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
7939279 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
7939302 ATAT
1 ATAT
7939306 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Done.