Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8285662
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 35
Found at i:7939579 original size:430 final size:431
Alignment explanation
Indices: 7938704--7940399 Score: 3269
Period size: 430 Copynumber: 3.9 Consensus size: 431
7938694 AATTCGCAGT
7938704 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7938769 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
7938834 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7938899 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
7938964 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
7939029 ATT-AATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7939093 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7939134 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7939199 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
7939264 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7939329 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
7939394 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
7939459 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7939524 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7939565 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCC-TTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7939627 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
7939692 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
* *
7939757 AAAAGTGTCGATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
*
7939822 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTT-TTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
7939886 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7939951 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7939992 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTAT-
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7940056 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
7940121 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
*
7940186 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
* * *
7940251 AAGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
* *
7940316 ATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7940381 AATGAAATTATTAAATCAA
391 AATGAAATTATTAAATCAA
7940400 ATAATTCAAA
Statistics
Matches: 1254, Mismatches: 7, Indels: 10
0.99 0.01 0.01
Matches are distributed among these distances:
427 135 0.11
428 273 0.22
429 267 0.21
430 469 0.37
431 110 0.09
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (431 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTACCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCATTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:7939692 original size:23 final size:23
Alignment explanation
Indices: 7939661--7939723 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7939651 ATAGGTAAAC
*
7939661 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
7939684 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
7939707 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
7939724 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:7939731 original size:23 final size:23
Alignment explanation
Indices: 7939661--7939733 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7939651 ATAGGTAAAC
* * **
7939661 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
7939684 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
7939707 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
7939730 ATAT
1 ATAT
7939734 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:7940121 original size:23 final size:23
Alignment explanation
Indices: 7940090--7940152 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7940080 ATAGGTAAAC
*
7940090 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
7940113 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
7940136 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
7940153 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:7940160 original size:23 final size:23
Alignment explanation
Indices: 7940090--7940162 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7940080 ATAGGTAAAC
* * **
7940090 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
7940113 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
7940136 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
7940159 ATAT
1 ATAT
7940163 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:7940465 original size:25 final size:25
Alignment explanation
Indices: 7940431--7940481 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7940421 ACAACAAATC
*
7940431 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
7940456 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
7940481 A
1 A
7940482 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:7940751 original size:18 final size:18
Alignment explanation
Indices: 7940730--7940766 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7940720 GTAATTGGAG
7940730 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
7940748 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
7940766 T
1 T
7940767 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:7940774 original size:24 final size:24
Alignment explanation
Indices: 7940722--7940768 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7940712 TTTCATATGT
* *
7940722 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
7940746 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
7940769 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:7941067 original size:39 final size:39
Alignment explanation
Indices: 7941024--7941146 Score: 228
Period size: 39 Copynumber: 3.2 Consensus size: 39
7941014 TCCGATGCTC
* *
7941024 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
7941063 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
7941102 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
7941141 ATCAAA
1 ATCAAA
7941147 TCTACAACTT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:7941583 original size:23 final size:23
Alignment explanation
Indices: 7941552--7941615 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7941542 ATAGGTAAAC
*
7941552 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7941575 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7941598 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7941616 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7941622 original size:23 final size:23
Alignment explanation
Indices: 7941552--7941624 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7941542 ATAGGTAAAC
* **
7941552 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7941575 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7941598 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7941621 ATAT
1 ATAT
7941625 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7944160 original size:30 final size:30
Alignment explanation
Indices: 7944126--7944184 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
7944116 CAGTTTCTTG
* **
7944126 GGCTGATCAGCAATAGATGGAGAAGAATCT
1 GGCTGATCAGCAAAAGACAGAGAAGAATCT
7944156 GGCTGATCAGCAAAAGACAGAGAAGAATC
1 GGCTGATCAGCAAAAGACAGAGAAGAATC
7944185 AGTCATTCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (30 bp):
GGCTGATCAGCAAAAGACAGAGAAGAATCT
Found at i:7946322 original size:39 final size:39
Alignment explanation
Indices: 7946279--7946377 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
7946269 TTGGGTCAAC
7946279 AACTGAGATTTTTCTTCAGTGTATGCCATAGGTATAAGA
1 AACTGAGATTTTTCTTCAGTGTATGCCATAGGTATAAGA
* * *
7946318 AACTGAGATTTTTCTTCATTGTATGCCATAGGTGTAAGC
1 AACTGAGATTTTTCTTCAGTGTATGCCATAGGTATAAGA
*
7946357 AACTGAAATTTTTCTTCAGTG
1 AACTGAGATTTTTCTTCAGTG
7946378 CACTCTTTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (39 bp):
AACTGAGATTTTTCTTCAGTGTATGCCATAGGTATAAGA
Found at i:7947813 original size:6 final size:6
Alignment explanation
Indices: 7947802--7947845 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
7947792 TGTTGTGTCC
7947802 GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GA
1 GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GAGTCT GA
7947846 AAGAGTAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (6 bp):
GAGTCT
Found at i:7949783 original size:22 final size:22
Alignment explanation
Indices: 7949758--7949808 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
7949748 AAATCACTGT
7949758 TTTTATTGAATAAAAATAATAA
1 TTTTATTGAATAAAAATAATAA
*
7949780 TTTTATTGAATAAAAATAATAT
1 TTTTATTGAATAAAAATAATAA
7949802 TTTTATT
1 TTTTATT
7949809 ATTATTTCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTTATTGAATAAAAATAATAA
Found at i:7950909 original size:21 final size:22
Alignment explanation
Indices: 7950883--7950923 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7950873 CCAGGAAAGG
7950883 GAGTATCGGTACTT-CTTTAAT
1 GAGTATCGGTACTTCCTTTAAT
7950904 GAGTATCGGTACTTCCTTTA
1 GAGTATCGGTACTTCCTTTA
7950924 TAATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (22 bp):
GAGTATCGGTACTTCCTTTAAT
Found at i:7952990 original size:17 final size:17
Alignment explanation
Indices: 7952964--7952998 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7952954 ACCTCATTCT
* *
7952964 TCTTCTTATTTTTCTTC
1 TCTTCATATTCTTCTTC
7952981 TCTTCATATTCTTCTTC
1 TCTTCATATTCTTCTTC
7952998 T
1 T
7952999 TCCTTTACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (17 bp):
TCTTCATATTCTTCTTC
Found at i:7954305 original size:21 final size:22
Alignment explanation
Indices: 7954276--7954316 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7954266 ATAGGATAGG
*
7954276 GAGTCTCGATAC-TCCTTTAAT
1 GAGTATCGATACTTCCTTTAAT
7954297 GAGTATCGATACTTCCTTTA
1 GAGTATCGATACTTCCTTTA
7954317 TAATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (22 bp):
GAGTATCGATACTTCCTTTAAT
Found at i:7958654 original size:24 final size:24
Alignment explanation
Indices: 7958622--7958680 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
7958612 ATGATCGTTA
7958622 TGTTTGTTTATACTCATTTGTTTG
1 TGTTTGTTTATACTCATTTGTTTG
** **
7958646 TGTTTGTTTACGCTTGTTTGTTTG
1 TGTTTGTTTATACTCATTTGTTTG
*
7958670 TGTTCGTTTAT
1 TGTTTGTTTAT
7958681 CATTTTAATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.63
Consensus pattern (24 bp):
TGTTTGTTTATACTCATTTGTTTG
Found at i:7960427 original size:23 final size:23
Alignment explanation
Indices: 7960401--7960453 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7960391 TATGGCACTA
**
7960401 CGGTGTAATTCTACGCGGCATTT
1 CGGTGTAATTCTACGCGGCACAT
* *
7960424 CGGTGCAATTCTACGTGGCACAT
1 CGGTGTAATTCTACGCGGCACAT
7960447 CGGTGTA
1 CGGTGTA
7960454 TTTATACGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (23 bp):
CGGTGTAATTCTACGCGGCACAT
Found at i:7960992 original size:3 final size:3
Alignment explanation
Indices: 7960984--7961020 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7960974 TTCCTAATTC
7960984 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7961021 CATGTATATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7968285 original size:25 final size:25
Alignment explanation
Indices: 7968247--7968303 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
7968237 TAAAGGCTAC
*
7968247 GAGTTTGGCATGTTTTTCAGTTGAT
1 GAGTTCGGCATGTTTTTCAGTTGAT
*
7968272 GAGTTCGGCTTGTTTTTCAGTTGAT
1 GAGTTCGGCATGTTTTTCAGTTGAT
7968297 GAGTTCG
1 GAGTTCG
7968304 TTTATGCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.14, C:0.11, G:0.30, T:0.46
Consensus pattern (25 bp):
GAGTTCGGCATGTTTTTCAGTTGAT
Found at i:7972206 original size:20 final size:20
Alignment explanation
Indices: 7972183--7972221 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7972173 CCGCCACTGT
* *
7972183 TTCTCCCCCTTTCCCTCCCC
1 TTCTCCCCCGTCCCCTCCCC
*
7972203 TTCTCTCCCGTCCCCTCCC
1 TTCTCCCCCGTCCCCTCCC
7972222 GAGCGCCACG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.64, G:0.03, T:0.33
Consensus pattern (20 bp):
TTCTCCCCCGTCCCCTCCCC
Found at i:7972335 original size:18 final size:18
Alignment explanation
Indices: 7972312--7972351 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
7972302 GGAATTACAG
7972312 TTTCCTAAAAACTATCAT
1 TTTCCTAAAAACTATCAT
7972330 TTTCCTAAAAACTATCAT
1 TTTCCTAAAAACTATCAT
7972348 TTTC
1 TTTC
7972352 AAATGCAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTCCTAAAAACTATCAT
Found at i:7986485 original size:21 final size:21
Alignment explanation
Indices: 7986406--7986486 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
7986396 GCACTGAAAT
7986406 TTGTCCCGAAGGACCAC--TA
1 TTGTCCCGAAGGACCACTGTA
* *
7986425 -TGTCCC-ATAGGACCATTGCA
1 TTGTCCCGA-AGGACCACTGTA
7986445 TTGTCCCGAAGGACCACTGTA
1 TTGTCCCGAAGGACCACTGTA
*
7986466 TTGTCCCGAATGACCACTGTA
1 TTGTCCCGAAGGACCACTGTA
7986487 ACCCTCGACT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
17 1 0.02
18 13 0.25
20 1 0.02
21 36 0.69
22 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (21 bp):
TTGTCCCGAAGGACCACTGTA
Found at i:7986984 original size:2 final size:2
Alignment explanation
Indices: 7986977--7987002 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7986967 CTTATGTAAG
7986977 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
7987003 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7987007 original size:2 final size:2
Alignment explanation
Indices: 7987002--7987041 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7986992 ACACACACAC
7987002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7987042 CATACAACGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7987413 original size:21 final size:20
Alignment explanation
Indices: 7987384--7987422 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7987374 TTTTATTTAC
7987384 GGGGGAATC-GATACCCCCAA
1 GGGGGAATCTG-TACCCCCAA
7987404 GGGGAGAATCTGTACCCCC
1 GGGG-GAATCTGTACCCCC
7987423 TGTACAATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 12 0.71
22 1 0.06
ACGTcount: A:0.26, C:0.31, G:0.31, T:0.13
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCAA
Found at i:7989853 original size:3 final size:3
Alignment explanation
Indices: 7989845--7989901 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
7989835 TGGAGGGGGA
* * * * * * *
7989845 GGT GGT GGT GCT GGT GCT GGT GCT GGT GGT GGT GGT GGC GGG GGC GGA
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
7989893 GGT GGT GGT
1 GGT GGT GGT
7989902 AATTTTGGTT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.02, C:0.09, G:0.63, T:0.26
Consensus pattern (3 bp):
GGT
Found at i:7989860 original size:12 final size:12
Alignment explanation
Indices: 7989845--7989878 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7989835 TGGAGGGGGA
7989845 GGTGGTGGTGCT
1 GGTGGTGGTGCT
*
7989857 GGTGCTGGTGCT
1 GGTGGTGGTGCT
7989869 GGTGGTGGTG
1 GGTGGTGGTG
7989879 GTGGCGGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.09, G:0.59, T:0.32
Consensus pattern (12 bp):
GGTGGTGGTGCT
Found at i:7989954 original size:21 final size:21
Alignment explanation
Indices: 7989912--7989954 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
7989902 AATTTTGGTT
*
7989912 GGGGATGGGGTGGAGGGAGAG
1 GGGGATGGGGGGGAGGGAGAG
*
7989933 GGGGA-GGGGGGGGGGGATGAG
1 GGGGATGGGGGGGAGGGA-GAG
7989954 G
1 G
7989955 ATGGGGATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.16, C:0.00, G:0.77, T:0.07
Consensus pattern (21 bp):
GGGGATGGGGGGGAGGGAGAG
Found at i:7989960 original size:12 final size:12
Alignment explanation
Indices: 7989945--7989979 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7989935 GGAGGGGGGG
7989945 GGGGATGAGGAT
1 GGGGATGAGGAT
*
7989957 GGGGATGGGGAT
1 GGGGATGAGGAT
*
7989969 GGGGAGGAGGA
1 GGGGATGAGGA
7989980 GGAGGAGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.66, T:0.11
Consensus pattern (12 bp):
GGGGATGAGGAT
Found at i:7994537 original size:34 final size:30
Alignment explanation
Indices: 7994488--7994593 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 30
7994478 TTAGTATATA
7994488 ATTAAAATAAAAATAAAATTTAAAAGTTAGAGTG
1 ATTAAAATAAAAAT--AA-TTAAAAGTT-GAGTG
* * *
7994522 ATTAAAATCAGAATAATTGAAAGTTGAGTG
1 ATTAAAATAAAAATAATTAAAAGTTGAGTG
* * *
7994552 ATTAAATTAAAAA-AATT-AAATTTTAGTG
1 ATTAAAATAAAAATAATTAAAAGTTGAGTG
* *
7994580 ATCAAAATAGAAAT
1 ATTAAAATAAAAAT
7994594 GAAAAAATAA
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
28 19 0.32
29 4 0.07
30 15 0.25
31 8 0.13
32 2 0.03
34 12 0.20
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (30 bp):
ATTAAAATAAAAATAATTAAAAGTTGAGTG
Found at i:7996158 original size:26 final size:26
Alignment explanation
Indices: 7996108--7996158 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
7996098 TAAAATAAGA
* * *
7996108 AATAAGTTTATTCATAAAGTGACATT
1 AATAAGTATATTCACAAAGTAACATT
*
7996134 AATAAGTATATTCACATAGTAACAT
1 AATAAGTATATTCACAAAGTAACAT
7996159 GACTTATGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (26 bp):
AATAAGTATATTCACAAAGTAACATT
Found at i:7998692 original size:14 final size:14
Alignment explanation
Indices: 7998673--7998707 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
7998663 TCACACAAAA
*
7998673 CTCCACTAGTAACC
1 CTCCACTAGCAACC
7998687 CTCCACTAGCAACC
1 CTCCACTAGCAACC
7998701 CTCCACT
1 CTCCACT
7998708 TTAGTCATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.20
Consensus pattern (14 bp):
CTCCACTAGCAACC
Found at i:8005826 original size:34 final size:34
Alignment explanation
Indices: 8005783--8005849 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
8005773 CAAACACATG
*
8005783 AGATACTAATGCTATTGTAAATACGCAAAAGGTC
1 AGATACTAATGCTATTGAAAATACGCAAAAGGTC
* *
8005817 AGATACTAATGTTATTGAAAATACGTAAAAGGT
1 AGATACTAATGCTATTGAAAATACGCAAAAGGT
8005850 AATGCTTGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.28
Consensus pattern (34 bp):
AGATACTAATGCTATTGAAAATACGCAAAAGGTC
Found at i:8009427 original size:21 final size:21
Alignment explanation
Indices: 8009401--8009447 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
8009391 GGTTCGCAAC
8009401 GCGAACTTCGACTATCACAAT
1 GCGAACTTCGACTATCACAAT
* *
8009422 GCGAACTTGGACTATCGCAAT
1 GCGAACTTCGACTATCACAAT
8009443 GCGAA
1 GCGAA
8009448 TATGTAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (21 bp):
GCGAACTTCGACTATCACAAT
Found at i:8009544 original size:21 final size:21
Alignment explanation
Indices: 8009456--8009537 Score: 128
Period size: 21 Copynumber: 3.9 Consensus size: 21
8009446 AATATGTAAA
*
8009456 TCGCAATGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
8009477 TCGCACTGCGATAGTCTAAGT
1 TCGCATTGCGATAGTCCAAGT
*
8009498 TCGCATTGCGATAATCCAAGT
1 TCGCATTGCGATAGTCCAAGT
8009519 TCGCATTGCGATAGTCCAA
1 TCGCATTGCGATAGTCCAA
8009538 AATCGCAACG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:8009544 original size:42 final size:42
Alignment explanation
Indices: 8009453--8009545 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
8009443 GCGAATATGT
* *
8009453 AAATCGCAATGCGATAGTCCAAGTTCGCACTGCGATAGTCTA
1 AAATCGCAATGCGATAATCCAAGTTCGCACTGCGATAGTCCA
** * *
8009495 AGTTCGCATTGCGATAATCCAAGTTCGCATTGCGATAGTCCA
1 AAATCGCAATGCGATAATCCAAGTTCGCACTGCGATAGTCCA
8009537 AAATCGCAA
1 AAATCGCAA
8009546 CGACTGGTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (42 bp):
AAATCGCAATGCGATAATCCAAGTTCGCACTGCGATAGTCCA
Found at i:8010142 original size:6 final size:6
Alignment explanation
Indices: 8010129--8010164 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
8010119 GCCGTCCGTC
8010129 TCGT-G TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
8010165 AATACATGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.00, C:0.17, G:0.47, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:8010279 original size:19 final size:19
Alignment explanation
Indices: 8010255--8010291 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8010245 TGCGATTTTG
8010255 GACTATCGCAACGAACTTC
1 GACTATCGCAACGAACTTC
8010274 GACTATCGCAACGAACTT
1 GACTATCGCAACGAACTT
8010292 GGAATAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
GACTATCGCAACGAACTTC
Found at i:8012233 original size:2 final size:2
Alignment explanation
Indices: 8012226--8012263 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8012216 ATACACGTGA
8012226 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8012264 GTGTGTGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8020217 original size:20 final size:21
Alignment explanation
Indices: 8020175--8020218 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8020165 TCATTTAAAA
*
8020175 TTTTAAAAATGATAATAATTT
1 TTTTAAAAATGATAATAAGTT
*
8020196 TTTTAAAAATG-TATTAAGTT
1 TTTTAAAAATGATAATAAGTT
8020216 TTT
1 TTT
8020219 CATAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
TTTTAAAAATGATAATAAGTT
Found at i:8023876 original size:2 final size:2
Alignment explanation
Indices: 8023869--8023896 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8023859 CGTAAAATTA
8023869 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8023897 TAATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8030881 original size:233 final size:236
Alignment explanation
Indices: 8030464--8030938 Score: 895
Period size: 233 Copynumber: 2.0 Consensus size: 236
8030454 AGGTGTATCT
*
8030464 TCAATGCCATCGGTTGCCTTTGTTACCAGTTCTAAGATTCTCTGTACATGCCCATGGGTTTCCTC
1 TCAATACCATCGGTTGCCTTTGTTACCAGTTCTAAGATTCTCTGTACATGCCCATGGGTTTCCTC
8030529 GGTTCTTGATTCCAAGATTGACAACCGCCTTTCCAGGGAATTTTTCCGTTCTGCCCACCATGAAG
66 GGTTCTTGATTCCAAGATTGACAACCGCCTTTCCAGGGAATTTTTCCGTTCTGCCCACCATGAAG
8030594 GTAGTTCTTCTTGGGTTCTGAAAGTCTGATCTTGAGCAGTAGTAACTGATTCGTTATCCTCACCA
131 GTAGTTCTTCTTGGGTTCTGAAAGTCTGATCTTGAGCAGTAGTAACTGATTCGTTATCCTCACCA
*
8030659 GTTTTTTGTTGCATCTTC-TGAATTT-TCC-GTTTTCGTGGA
196 GTTTTTTGTTGCATCTTCTTGAATTTCCCCAG-TTTCGTGGA
8030698 TCAATACCA-CGGTTGCCTTTGTTACCAGTTCTAAGATTCTCTGTACATGCCCATGGGTTTCCTC
1 TCAATACCATCGGTTGCCTTTGTTACCAGTTCTAAGATTCTCTGTACATGCCCATGGGTTTCCTC
8030762 GGTTCTTGATTCCAAGATTGACAACCGCCTTTCCAGGGAATTTTTCCGTTCTGCCCACCATGAAG
66 GGTTCTTGATTCCAAGATTGACAACCGCCTTTCCAGGGAATTTTTCCGTTCTGCCCACCATGAAG
8030827 GTAGTTCTTCTTGGGTTCTGAAAGTCTGATCTTGAGCAGTAGTAACTGATTCGTTATCCTCACCA
131 GTAGTTCTTCTTGGGTTCTGAAAGTCTGATCTTGAGCAGTAGTAACTGATTCGTTATCCTCACCA
8030892 GTTTTTTGTTGCATCTTCTTGAATTTCCCCAGTTTCGTGGA
196 GTTTTTTGTTGCATCTTCTTGAATTTCCCCAGTTTCGTGGA
8030933 TCAATA
1 TCAATA
8030939 ACCAGCTCTA
Statistics
Matches: 236, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
233 203 0.86
234 15 0.06
235 17 0.07
236 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (236 bp):
TCAATACCATCGGTTGCCTTTGTTACCAGTTCTAAGATTCTCTGTACATGCCCATGGGTTTCCTC
GGTTCTTGATTCCAAGATTGACAACCGCCTTTCCAGGGAATTTTTCCGTTCTGCCCACCATGAAG
GTAGTTCTTCTTGGGTTCTGAAAGTCTGATCTTGAGCAGTAGTAACTGATTCGTTATCCTCACCA
GTTTTTTGTTGCATCTTCTTGAATTTCCCCAGTTTCGTGGA
Found at i:8043558 original size:24 final size:24
Alignment explanation
Indices: 8043485--8043561 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 24
8043475 CACCCTTTAA
*
8043485 GCCATATATGCACAGATATTCTGT
1 GCCATATATGCACAGAAATTCTGT
*** **
8043509 GCC--ATATGCATCCTCAATT-TAA
1 GCCATATATGCA-CAGAAATTCTGT
8043531 GCCATATATGCACAGAAATTCTGT
1 GCCATATATGCACAGAAATTCTGT
8043555 GCCATAT
1 GCCATAT
8043562 GCATCATCAC
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 11 0.29
23 9 0.24
24 18 0.47
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (24 bp):
GCCATATATGCACAGAAATTCTGT
Found at i:8043564 original size:22 final size:22
Alignment explanation
Indices: 8043490--8043564 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
8043480 TTTAAGCCAT
*
8043490 ATATGCACAGATATTCTGTGCC
1 ATATGCACAGAAATTCTGTGCC
*** **
8043512 ATATGCATCCTCAATT-TAAGCC
1 ATATGCA-CAGAAATTCTGTGCC
8043534 ATATATGCACAGAAATTCTGTGCC
1 --ATATGCACAGAAATTCTGTGCC
8043558 ATATGCA
1 ATATGCA
8043565 TCATCACATA
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 18 0.47
23 9 0.24
24 11 0.29
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (22 bp):
ATATGCACAGAAATTCTGTGCC
Found at i:8061058 original size:7 final size:7
Alignment explanation
Indices: 8061046--8061123 Score: 156
Period size: 7 Copynumber: 11.1 Consensus size: 7
8061036 ATTTACACAT
8061046 TTTGCCA
1 TTTGCCA
8061053 TTTGCCA
1 TTTGCCA
8061060 TTTGCCA
1 TTTGCCA
8061067 TTTGCCA
1 TTTGCCA
8061074 TTTGCCA
1 TTTGCCA
8061081 TTTGCCA
1 TTTGCCA
8061088 TTTGCCA
1 TTTGCCA
8061095 TTTGCCA
1 TTTGCCA
8061102 TTTGCCA
1 TTTGCCA
8061109 TTTGCCA
1 TTTGCCA
8061116 TTTGCCA
1 TTTGCCA
8061123 T
1 T
8061124 GGCAAAAGAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 71 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (7 bp):
TTTGCCA
Found at i:8064296 original size:22 final size:22
Alignment explanation
Indices: 8064264--8064305 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8064254 ATATAACAGG
* *
8064264 TAAAAATATGATAAAACTGGTC
1 TAAAAAAATGACAAAACTGGTC
8064286 TAAAAAAATGACAAAACTGG
1 TAAAAAAATGACAAAACTGG
8064306 AAAAAGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (22 bp):
TAAAAAAATGACAAAACTGGTC
Found at i:8064545 original size:181 final size:181
Alignment explanation
Indices: 8064052--8064704 Score: 807
Period size: 181 Copynumber: 3.6 Consensus size: 181
8064042 ATACAAATGA
* * * * * * * *
8064052 AAAATGAATCGCTCCATAGCAATATTACAGGTACAAATATGACAAAACCGATCACAAAATGACAA
1 AAAATGTATCGATCCATACCAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAATGACAA
* * * *
8064117 AATCGGTAAAACGCTATCAT-ATATATTGAAAGTGTAGATAATTTAATATAAGTATCGAAACTTT
66 AACCGG-AAAAAGTTA-CATGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
* * *
8064181 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA-A
129 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * * * *
8064233 AAAATATATCGATCTACAACAATATAACAGGTAAAAATATGATAAAACTGGTCTAAAAAAATGAC
1 AAAATGTATCGATCCATACCAATATAACAGGTAAAAATATGATAAAACCGGTCT--CAAAATGAC
* ** * *
8064298 AAAACTGGAAAAAGTTACCGGATATATTGAAAGTGTCGATAATTTAATATTAGTATCGACACTTT
64 AAAACCGGAAAAAGTTACATGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
*
8064363 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGGCACTTTATG
129 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
8064416 AAAATGTATCGATCCTTACCAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATAACAA
1 AAAATGTATCGATCCATACCAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAATGACAA
* * *
8064481 AACCGGAAAAAATTACATGATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCT
66 AACCGGAAAAAGTTACATGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCT
* * * *
8064546 TAATTTAAAAGAGAAGAAGTTATAGCGCTTAAAAAATGTCGACATTTTATG
131 GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
8064597 AAAATGTATCGATCCAAAAC-A-ATAACAAGTAAAAATATGATAAAACCGGTCTC-AAATGAC-A
1 AAAATGTATCGATCCATACCAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAATGACAA
* * ** *
8064658 AA-CGGTAAATAGATACCGGATATATTGAAAGTGTCGATACTTTAATA
66 AACCGG-AAAAAGTTACATGATATATTGAAAGTGTCGATAATTTAATA
8064705 AGTACGCGTA
Statistics
Matches: 406, Mismatches: 61, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
176 3 0.01
177 36 0.09
178 6 0.01
179 30 0.07
180 1 0.00
181 172 0.42
182 96 0.24
183 62 0.15
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (181 bp):
AAAATGTATCGATCCATACCAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAATGACAA
AACCGGAAAAAGTTACATGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCT
GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
Found at i:8068205 original size:24 final size:24
Alignment explanation
Indices: 8068132--8068208 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 24
8068122 CACCCTTTAA
*
8068132 GCCATATATGCACAGATATTCTGT
1 GCCATATATGCACAGAAATTCTGT
*** **
8068156 GCC--ATATGCATCCTCAATT-TAA
1 GCCATATATGCA-CAGAAATTCTGT
8068178 GCCATATATGCACAGAAATTCTGT
1 GCCATATATGCACAGAAATTCTGT
8068202 GCCATAT
1 GCCATAT
8068209 GCATCATCAC
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 11 0.29
23 9 0.24
24 18 0.47
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (24 bp):
GCCATATATGCACAGAAATTCTGT
Found at i:8068211 original size:22 final size:22
Alignment explanation
Indices: 8068137--8068211 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
8068127 TTTAAGCCAT
*
8068137 ATATGCACAGATATTCTGTGCC
1 ATATGCACAGAAATTCTGTGCC
*** **
8068159 ATATGCATCCTCAATT-TAAGCC
1 ATATGCA-CAGAAATTCTGTGCC
8068181 ATATATGCACAGAAATTCTGTGCC
1 --ATATGCACAGAAATTCTGTGCC
8068205 ATATGCA
1 ATATGCA
8068212 TCATCACATA
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 18 0.47
23 9 0.24
24 11 0.29
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (22 bp):
ATATGCACAGAAATTCTGTGCC
Found at i:8085720 original size:7 final size:7
Alignment explanation
Indices: 8085708--8085785 Score: 156
Period size: 7 Copynumber: 11.1 Consensus size: 7
8085698 ATTTACACAT
8085708 TTTGCCA
1 TTTGCCA
8085715 TTTGCCA
1 TTTGCCA
8085722 TTTGCCA
1 TTTGCCA
8085729 TTTGCCA
1 TTTGCCA
8085736 TTTGCCA
1 TTTGCCA
8085743 TTTGCCA
1 TTTGCCA
8085750 TTTGCCA
1 TTTGCCA
8085757 TTTGCCA
1 TTTGCCA
8085764 TTTGCCA
1 TTTGCCA
8085771 TTTGCCA
1 TTTGCCA
8085778 TTTGCCA
1 TTTGCCA
8085785 T
1 T
8085786 GGCAAAAGAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 71 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (7 bp):
TTTGCCA
Found at i:8088993 original size:22 final size:22
Alignment explanation
Indices: 8088961--8089002 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8088951 ATATAACAGG
* *
8088961 TAAAAATATGATAAAACTGGTC
1 TAAAAAAATGACAAAACTGGTC
8088983 TAAAAAAATGACAAAACTGG
1 TAAAAAAATGACAAAACTGG
8089003 AAAAAGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (22 bp):
TAAAAAAATGACAAAACTGGTC
Found at i:8089043 original size:182 final size:181
Alignment explanation
Indices: 8088768--8089406 Score: 843
Period size: 181 Copynumber: 3.5 Consensus size: 181
8088758 CGCTCCATAG
* * * * * * * * * * *
8088768 CAATATTACAGGTACAAATATGACAAAACCGATCACAAAATGACAAAATCGGTAAAACGCTATCA
1 CAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACCGG-AAAAAGTTACCG
* *
8088833 TATATATTGAAAGTGTAGATAATTTAATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGAA
65 GATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGAA
* * * *
8088898 GTTATAGCGCCTATAAAGTGTCGATACTTTA-AAAAATATATCGATCTACAA
130 GTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCTACAA
* * *
8088949 CAATATAACAGGTAAAAATATGATAAAACTGGTCTAAAAAAATGACAAAACTGGAAAAAGTTACC
1 CAATATAACAGGTAAAAATATGATAAAACAGGTCT--CAAAATGACAAAACCGGAAAAAGTTACC
* *
8089014 GGATATATTGAAAGTGTCGATAATTTAATATTAGTATCGACACTTTCTGAATTTAAAAGAGAAGA
64 GGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGA
*
8089079 AGTTATAGCGCCTAAAAAGTGTCGGCACTTTATGAAAATGTATCGATCCTTAC--
129 AGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGAT-C-TACAA
* * **
8089132 CAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATAACAAAACCGGAAAAAATTACATG
1 CAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACCGGAAAAAGTTACCGG
* * *
8089197 ATATGTTAAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTTAATTTAAAAGAGAAGAAG
66 ATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGAAG
* * * * *
8089262 TTATAGCGCTTAAAAAATGTCGACATTTTATGAAAATGTATCGATCCAAAA
131 TTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCTACAA
* * * *
8089313 CAATATAACAAGTAAAAATATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAATAGATACCG
1 CAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACCGG-AAAAAGTTACCG
*
8089378 GATATATTGAAAGTGTCGATACTTTAATA
65 GATATATTGAAAGTGTCGATAATTTAATA
8089407 AGTACGCGTA
Statistics
Matches: 399, Mismatches: 51, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
179 1 0.00
180 1 0.00
181 203 0.51
182 130 0.33
183 60 0.15
184 1 0.00
185 3 0.01
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (181 bp):
CAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACCGGAAAAAGTTACCGG
ATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGAAG
TTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCTACAA
Found at i:8089804 original size:17 final size:18
Alignment explanation
Indices: 8089782--8089828 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
8089772 ACTTTTAGTT
8089782 ATATTATAGGT-AAAATG
1 ATATTATAGGTAAAAATG
8089799 ATATTATAGGTAGAAAATG
1 ATATTATAGGTA-AAAATG
*
8089818 ATATTTTAGGT
1 ATATTATAGGT
8089829 TGTATAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 11 0.41
19 16 0.59
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (18 bp):
ATATTATAGGTAAAAATG
Found at i:8091106 original size:22 final size:22
Alignment explanation
Indices: 8091055--8091110 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
8091045 AATGTTTTTG
*
8091055 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
8091078 TAGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
8091100 CTTTTATTATA
1 -TTTTATTATA
8091111 AATGCATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:8093334 original size:13 final size:13
Alignment explanation
Indices: 8093316--8093346 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8093306 AATAGAACAA
8093316 GTGTCGATACTTT
1 GTGTCGATACTTT
8093329 GTGTCGATACTTT
1 GTGTCGATACTTT
*
8093342 TTGTC
1 GTGTC
8093347 CAGAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.23, T:0.48
Consensus pattern (13 bp):
GTGTCGATACTTT
Found at i:8093670 original size:199 final size:199
Alignment explanation
Indices: 8093329--8093838 Score: 770
Period size: 199 Copynumber: 2.5 Consensus size: 199
8093319 TCGATACTTT
* *
8093329 GTGTCGATACTTTTTGTCCAGAATGTATTTAAAAAACAAGTGCACTAAAAAATGTCGATACATTT
1 GTGTCGATACTTTTTGTCCAGAATGTATTTCAAAAACAAGTGCACTAAAAAGTGTCGATACATTT
* * * *
8093394 GTAACAAGTGTTGATCCCAAAAATATCAAAAACCATAATTATAATGTAACAGGTAAATTAGCAAT
66 GTAACAAGTGTTGATCCCAAAAACATCGAAAACTATAATTATAATGTAACAGGTAAATTAACAAT
*
8093459 ATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAAAAGTATCGACACAAATAGA
131 ATAACAGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAAAAGTATCGACACAAATAGA
8093524 ACAA
196 ACAA
*
8093528 GTGTCGATACTTTTTGTCCAGAATGTATTTCAAAAACAAGTGCCCTAAAAAGTGTCGATACATTT
1 GTGTCGATACTTTTTGTCCAGAATGTATTTCAAAAACAAGTGCACTAAAAAGTGTCGATACATTT
* *
8093593 GTAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAATGTAATAGGTAAATTAACAAT
66 GTAACAAGTGTTGATCCCAAAAACATCGAAAACTATAATTATAATGTAACAGGTAAATTAACAAT
* * * * *
8093658 ATAACAGGTCTAAATGTACCGGTTTTTGAGAAAACAGGTGTACAAACAGTATCGACACAAATGGA
131 ATAACAGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAAAAGTATCGACACAAATAGA
8093723 ACAA
196 ACAA
* * * * *
8093727 GTGTCGATACTTTTTTTCCAGAATGTATTTCAGAACCAAGTGTAC-AACAAAGTTTCGATACATT
1 GTGTCGATACTTTTTGTCCAGAATGTATTTCAAAAACAAGTGCACTAA-AAAGTGTCGATACATT
* * *
8093791 TATAACAATTTTTGATCCCAAAAACATCGAAAAACATAATAATTATAA
65 TGTAACAAGTGTTGATCCCAAAAACATCG-AAAAC-T-ATAATTATAA
8093839 CCAAATGTCT
Statistics
Matches: 282, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
198 2 0.01
199 264 0.94
200 5 0.02
201 1 0.00
202 10 0.04
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.28
Consensus pattern (199 bp):
GTGTCGATACTTTTTGTCCAGAATGTATTTCAAAAACAAGTGCACTAAAAAGTGTCGATACATTT
GTAACAAGTGTTGATCCCAAAAACATCGAAAACTATAATTATAATGTAACAGGTAAATTAACAAT
ATAACAGGTCTAAATATACCGATTTTTGAGAAAACAGATGTACAAAAAGTATCGACACAAATAGA
ACAA
Found at i:8097395 original size:20 final size:20
Alignment explanation
Indices: 8097366--8097414 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8097356 CCATAACAAT
8097366 AAAACAGGTCAAAAAATGAC
1 AAAACAGGTCAAAAAATGAC
* * *
8097386 AAAACCGGTCTATAAATGAC
1 AAAACAGGTCAAAAAATGAC
8097406 AAAACAGGT
1 AAAACAGGT
8097415 AAAGCGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.14
Consensus pattern (20 bp):
AAAACAGGTCAAAAAATGAC
Found at i:8097752 original size:933 final size:937
Alignment explanation
Indices: 8095735--8098536 Score: 4869
Period size: 935 Copynumber: 3.0 Consensus size: 937
8095725 CATCAACATT
*
8095735 ATGTACTTCATGGCATTCA---GTTGGCTTAACATTGTCTGCATCGTATGATCCCATGGAAAAAA
1 ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATCGTATGAT-CCATGGCAAAAA
** *
8095797 AATTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAATAAAGGTTCATT
65 TTTTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAGTAAA-GTTCATT
*
8095862 GAACAACATGTTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAGTTGGAGGGTGG
129 GAACAACATGTTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAGTTAGAGGGTGG
8095927 GTACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTA
194 GTACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTA
*
8095992 AAGTAATAGGTAAATTTACAATGTATGTGGTAAAAATATACTTTTTTAATGACAAAATTAGTAAA
259 AAGTAATAGGTAAATTTACAATGTAGGTGGTAAAAATATA-TTTTTTAATGACAAAATTAGTAAA
*
8096057 CACAAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCG-GC
323 CACAAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACC
*
8096121 TCAAAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATA
388 CCAAAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATA
8096186 TACTGGTTAATTATAAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTT
453 TACTGGTTAATTATAAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTT
*
8096251 TTTTCCAAAAGAAAGCAC-AACAGGTTCACGCATAAAGTGTTGATACATTTAAAATTGTATCGAT
518 TTTTCCAAAAGAAAGCACAAACAGGTTCACGCATAAAGTGTCGATACATTTAAAATTGTATCGAT
8096315 CACAAAAACATCGAAACCGATAATTATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAAT
583 CACAAAAACATCGAAACCGA-AA-TATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAAT
*
8096380 TTATCAGATATGTT-ACTAGTTTGGATACTTTATAAAAATGTATCGATCCCATAACAATAAAACA
646 TTATCGGATATGTTGA-TAGTTTGGATACTTTATAAAAATGTATCGAT-CCATAACAATAAAACA
*
8096444 TGTC-AAAAATGACAAAACC-GTCTAT-AATGACAAAACAGGTAAAGCG-TACCGGATATGTTGA
709 GGTCAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGA
*
8096505 TAGTGT-GATACTTTATTATAGGTGTCGACACTTTTGGAATTTAAAAGAGAAATAAGTTATAGCG
774 TAGTGTCGATACTTTATTATAGGTATCGACACTTTTGGAATTTAAAAGAG-AATAAGTTATAGCG
8096569 CTAATAAAGTGTCGATACTTTAT-AAAA-ATATCGATTCCATAACAATATAACAAGTAAAAATAT
838 CTAATAAAGTGTCGATACTTTATAAAAATATATCGA-TCCATAACAATATAACAAGTAAAAATAT
* *
8096632 GCCAAAACCGGTCTCGAAATGGCAAAACCGGTAAAA
902 GTCAAAACCGGTCTCGAAATGACAAAACCGGTAAAA
8096668 ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATCTGTATGATCCATGGCAAAAA
1 ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATC-GTATGATCCATGGCAAAAA
* *
8096733 TTTTGTTGTGCAATTTCAATGGTCACAACAGGAGTTGATGGAGATGTAAGTAGTAAAGTTCATTG
65 TTTTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAGTAAAGTTCATTG
* * *
8096798 AACAATATGTTTTCAGTGGTGCTTTCAATAGGATGCGGTATTGGTAGTGGTAGTTAGAGGGTGGA
130 AACAACATGTTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAGTTAGAGGGTGGG
8096863 TACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTAA
195 TACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTAA
8096928 AGTAATAGGTAAATTTACAATGTAGGTGGTAAAAATATATTTTTTTAATGACAAAATTAGTAAAC
260 AGTAATAGGTAAATTTACAATGTAGGTGGTAAAAATATA-TTTTTTAATGACAAAATTAGTAAAC
8096993 ACAAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACCC
324 ACAAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACCC
* * *
8097058 CAAAAACATCAAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACTAATATACATAT
389 CAAAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATAT
8097123 ACTGGTTAATTATAAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTTT
454 ACTGGTTAATTATAAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTTT
* *
8097188 TTTCCAAAAGAAAGCACAAACAGATTCACGCATAAAGTG-CGATACATTTAAAATTATATCGATC
519 TTTCCAAAAGAAAGCACAAACAGGTTCACGCATAAAGTGTCGATACATTTAAAATTGTATCGATC
*
8097252 ACAAAAAAATCG-AACCG-AA-ATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAATTTA
584 ACAAAAACATCGAAACCGAAATATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAATTTA
8097314 TCGGATATGTTGATAG-TTGGATACTTTAT-AAAATGTATCGATCCATAACAATAAAACAGGTCA
649 TCGGATATGTTGATAGTTTGGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTCA
8097377 AAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTG
714 AAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTG
*
8097442 TCGATACTTTATTATAGGTATCGACACTTTTGGAATTTAAAAGAGAATAAGTTATAACGCTAATA
779 TCGATACTTTATTATAGGTATCGACACTTTTGGAATTTAAAAGAGAATAAGTTATAGCGCTAATA
*
8097507 AAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACATGTAAAAATATGTCAAAA
844 AAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAAGTAAAAATATGTCAAAA
8097572 CCGGTCTCGAAATGACAAAACCGGTAAAA
909 CCGGTCTCGAAATGACAAAACCGGTAAAA
8097601 ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATCAGTATGATCCATGGCAAAAA
1 ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATC-GTATGATCCATGGCAAAAA
8097666 TTTTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAGTAAAGTTCATTG
65 TTTTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAGTAAAGTTCATTG
*
8097731 AACAACATATTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAG-TAGAGGGTGGG
130 AACAACATGTTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAGTTAGAGGGTGGG
8097795 TACAACATTAAATTTGCAGGAC--ATTCA-GTATGTTCAATAACTACAACATTCAATAACTTTAA
195 TACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTAA
* *
8097857 AGTAATTGGTAAATTTACAATGTAGGTGGTAAAAATATACTTTTTAATGACAAAATTAGTAAACA
260 AGTAATAGGTAAATTTACAATGTAGGTGGTAAAAATATATTTTTTAATGACAAAATTAGTAAACA
*
8097922 CAAAGATTTGTTTCGATATATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACCCC
325 CAAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACCCC
8097987 AAAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATATA
390 AAAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATATA
* * * *
8098052 CTGGTTAATTATAAAAACAGGTGAACATAAAGTATCAACACCTTTTAAGTTTGTGCCGATACTTT
455 CTGGTTAATTAT-AAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTTT
8098117 TTTCCAAAAGAAAGCACAAACAGGTTCACGCATAAAGTGTCGATACATTTAAAATTGTATCGATC
519 TTTCCAAAAGAAAGCACAAACAGGTTCACGCATAAAGTGTCGATACATTTAAAATTGTATCGATC
* * *
8098182 ACAAAAACATCGAAACTGATAATTATAATGTAATAGGTTAATTTACAATGTAACTGGTTTAAATT
584 ACAAAAACATCGAAACCGA-AA-TATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAATT
* * *
8098247 TACCGGATATGTTGATAGTTTTGATACTTTATAAAAATGTATCGATACATAACAATAAAACAGGT
647 TATCGGATATGTTGATAGTTTGGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGT
8098312 CAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAG
712 CAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAG
*
8098377 TGTCGATACTTTATTATAGGTATCGATACTTTTGGAATTTAAAAGAGAATAAGTTATAGCGCTAA
777 TGTCGATACTTTATTATAGGTATCGACACTTTTGGAATTTAAAAGAGAATAAGTTATAGCGCTAA
* * * * *
8098442 TAAAATGTCGATACTTTATAAAAATGTATAGATCCATAATAATATAACAGGTAAAAATATGAT-A
842 TAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAAGTAAAAATATG-TCA
8098506 AAACCGGTCTCGAAATGACAAAACCGGTAAA
906 AAACCGGTCTCGAAATGACAAAACCGGTAAA
8098537 GAGCTGCCGG
Statistics
Matches: 1784, Mismatches: 61, Indels: 44
0.94 0.03 0.02
Matches are distributed among these distances:
928 182 0.10
929 187 0.10
930 59 0.03
931 81 0.05
932 90 0.05
933 307 0.17
934 7 0.00
935 319 0.18
936 277 0.16
937 274 0.15
938 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (937 bp):
ATGTACTTCATGGCATTCATTGGTTGGCTTAACATTGTCTGCATCGTATGATCCATGGCAAAAAT
TTTGTTGTGCAATTTCAGTGGTCCCAACAGGAGTTGATGGAGATGTAAGTAGTAAAGTTCATTGA
ACAACATGTTTTCAGTGGTGCTTTCAATAGGATGTGGTATTGGTAGTGGTAGTTAGAGGGTGGGT
ACAACATTAAATTTGCAGGACATATTCAGGTATGTTCAATAACTACAACATTCAATAACTTTAAA
GTAATAGGTAAATTTACAATGTAGGTGGTAAAAATATATTTTTTAATGACAAAATTAGTAAACAC
AAAGATTTGTTTCGATACATATGTAAGAATATGTGTCGATACATTTTCAAAAAGTATCGACCCCA
AAAACATCGAAACAAATAATTATAATGTAATATTTAAATTAACAATGTAACCAGTATACATATAC
TGGTTAATTATAAAACAGGTCAACATAAAGTATCGACACTTTTTAAGTTTGTGTCGATACTTTTT
TCCAAAAGAAAGCACAAACAGGTTCACGCATAAAGTGTCGATACATTTAAAATTGTATCGATCAC
AAAAACATCGAAACCGAAATATAATGTAATAGGTCAATTTACAATGTAACCGGTTTAAATTTATC
GGATATGTTGATAGTTTGGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTCAAA
AAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTC
GATACTTTATTATAGGTATCGACACTTTTGGAATTTAAAAGAGAATAAGTTATAGCGCTAATAAA
GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAAGTAAAAATATGTCAAAACC
GGTCTCGAAATGACAAAACCGGTAAAA
Found at i:8098332 original size:20 final size:20
Alignment explanation
Indices: 8098303--8098351 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8098293 ACATAACAAT
8098303 AAAACAGGTCAAAAAATGAC
1 AAAACAGGTCAAAAAATGAC
* * *
8098323 AAAACCGGTCTATAAATGAC
1 AAAACAGGTCAAAAAATGAC
8098343 AAAACAGGT
1 AAAACAGGT
8098352 AAAGCGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.14
Consensus pattern (20 bp):
AAAACAGGTCAAAAAATGAC
Found at i:8098615 original size:182 final size:182
Alignment explanation
Indices: 8098269--8098716 Score: 641
Period size: 182 Copynumber: 2.5 Consensus size: 182
8098259 TGATAGTTTT
* *
8098269 GATACTTTATAAAAATGTATCGATACATAACAATAAAACAGGTCAAAAA-ATGACAAAACCGGTC
1 GATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAATATGACAAAACCGGTC
** * * *
8098333 TATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTATTATAGGT
65 TCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTGTCGATACTTTATTATAAGT
* * * * *
8098398 ATCGATACTTTTGGAATTTAAAAGAGAATAAGTTATAGCGCTAATAAAATGTC
130 ATCGACACTTTTAGAATTTAAAAAAGAAGAAGTTATAGCGCCAATAAAATGTC
* * *
8098451 GATACTTTATAAAAATGTATAGATCCATAATAATATAACAGGTAAAAATATGATAAAACCGGTCT
1 GATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCT
*
8098516 CGAAATGACAAAACCGGTAAAGAGCTGCCGGATATGTTGATAGTGTCGATAC-TTATTATAAGTA
66 CGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTGTCGATACTTTATTATAAGTA
*
8098580 TCGACAC-TTTAGAATTTAGAAAAAGAAAGAAGTTATAGCGCCAATAAAGTGTC
131 TCGACACTTTTAGAATTTA-AAAAAG-AAGAAGTTATAGCGCCAATAAAATGTC
* * * *
8098633 GATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGATAT
1 GATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCT
* *
8098698 CGAAATAACAAAAACGGTA
66 CGAAATGACAAAACCGGTA
8098717 GTAAAAAAGT
Statistics
Matches: 237, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
180 10 0.04
181 27 0.11
182 200 0.84
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (182 bp):
GATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCT
CGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTGTCGATACTTTATTATAAGTA
TCGACACTTTTAGAATTTAAAAAAGAAGAAGTTATAGCGCCAATAAAATGTC
Found at i:8099357 original size:23 final size:23
Alignment explanation
Indices: 8099331--8099378 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
8099321 AAATATGTCA
*
8099331 ATATAAGCGCTACCTATTATATT
1 ATATAAGCGCTACCTAATATATT
*
8099354 ATATAAGTGCTACCTAATATATT
1 ATATAAGCGCTACCTAATATATT
8099377 AT
1 AT
8099379 TGTACTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATATATT
Found at i:8106950 original size:18 final size:17
Alignment explanation
Indices: 8106911--8106953 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
8106901 ATTATATGGA
8106911 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
8106927 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
8106945 TATTATTAT
1 TATTATTAT
8106954 GTATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:8109514 original size:18 final size:18
Alignment explanation
Indices: 8109491--8109530 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
8109481 TTCCTTCAAG
8109491 TCTGGATTCACATCCACT
1 TCTGGATTCACATCCACT
8109509 TCTGGATTCACATCCACT
1 TCTGGATTCACATCCACT
8109527 TCTG
1 TCTG
8109531 AAAGACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (18 bp):
TCTGGATTCACATCCACT
Found at i:8111263 original size:22 final size:22
Alignment explanation
Indices: 8111240--8111302 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 22
8111230 CAAAAAGGGC
8111240 AAAAAGAAAAAAGAAAAGAAGCA
1 AAAAAGAAAAAA-AAAAGAAGCA
*
8111263 AAAAAGGAAAAAAACAAGAA-CA
1 AAAAA-GAAAAAAAAAAGAAGCA
8111285 AAAAAGAAAGAACAAAAA
1 AAAAAGAAA-AA-AAAAA
8111303 TAAAAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 4 0.11
22 9 0.26
23 15 0.43
24 7 0.20
ACGTcount: A:0.79, C:0.06, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAAAAAAAGAAGCA
Found at i:8111298 original size:20 final size:22
Alignment explanation
Indices: 8111248--8111309 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 22
8111238 GCAAAAAGAA
8111248 AAAAGAA-AAGAAGCAAAAAAGG
1 AAAAGAACAAGAA-CAAAAAAGG
*
8111270 AAAAAAACAAGAACAAAAAA-G
1 AAAAGAACAAGAACAAAAAAGG
* *
8111291 -AAAGAACAAAAATAAAAAA
1 AAAAGAACAAGAACAAAAAA
8111310 AAGGGACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 16 0.46
21 1 0.03
22 13 0.37
23 5 0.14
ACGTcount: A:0.79, C:0.06, G:0.13, T:0.02
Consensus pattern (22 bp):
AAAAGAACAAGAACAAAAAAGG
Found at i:8111946 original size:22 final size:22
Alignment explanation
Indices: 8111918--8111968 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
8111908 CTCCATCAAT
8111918 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
8111940 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
8111962 CCTTTGA
1 CCTTTGA
8111969 CCAAACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:8112879 original size:36 final size:36
Alignment explanation
Indices: 8112830--8112934 Score: 138
Period size: 37 Copynumber: 2.9 Consensus size: 36
8112820 GTGCTCACCA
*
8112830 TTGTCTCTCTTGAGACAATTTCCCTTGAAACAAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
* * *
8112866 TTGTCTCTGTTGAGACAGTTTCCTTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
* * *
8112903 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
8112935 TAAACATTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 29 0.49
37 30 0.51
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
Found at i:8112924 original size:37 final size:37
Alignment explanation
Indices: 8112830--8112939 Score: 134
Period size: 36 Copynumber: 3.0 Consensus size: 37
8112820 GTGCTCACCA
* *
8112830 TTGTCTCTCTTGAGACAATTTCCCTTGAAAC-AAACT
1 TTGTCTCTCTTGAGACAGTTTCCTTTGAAACAAAACT
* *
8112866 TTGTCTCTGTTGAGACAGTTTCCTTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCTTTGAAACAAAACT
* *
8112903 TTTTCTCCCTTGAGACAGTTT-CTCTTGAAACATAAAC
1 TTGTCTCTCTTGAGACAGTTTCCT-TTGAAACA-AAAC
8112940 ATTGAAAACA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
36 30 0.48
37 30 0.48
38 3 0.05
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCTTTGAAACAAAACT
Found at i:8112978 original size:50 final size:50
Alignment explanation
Indices: 8112923--8113082 Score: 133
Period size: 50 Copynumber: 3.2 Consensus size: 50
8112913 TGAGACAGTT
8112923 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
1 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
* * *** * * * * ** * *** *
8112973 TCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCATTGAG-ACAGTT
1 TCTCTTGAAACA-TAAACATTGAAA-ACATTTCCCT-TGAAATGAGTTTTGTC
*
8113025 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTC
1 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
8113075 TCTCTTGA
1 TCTCTTGA
8113083 GATAGTTTCC
Statistics
Matches: 73, Mismatches: 33, Indels: 8
0.64 0.29 0.07
Matches are distributed among these distances:
49 5 0.07
50 27 0.37
51 16 0.22
52 19 0.26
53 6 0.08
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (50 bp):
TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
Found at i:8113023 original size:102 final size:102
Alignment explanation
Indices: 8112847--8113203 Score: 588
Period size: 102 Copynumber: 3.5 Consensus size: 102
8112837 TCTTGAGACA
** * * * * *
8112847 ATTTCCCTTGAAACAAACTTTGTCTCTGTTGAGACAGTTTCCTTTGAAACAAAATTTTTTCTCCC
1 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
8112912 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
66 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
* ** *
8112949 ATTTCCCTTGAAATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCA
1 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
8113014 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
66 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
8113051 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
1 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
8113116 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
66 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
** *
8113153 ATTTCCCTTGAAATGAATTCCGTCTCTCTTGAGATAGTTTCTCTTGAAACA
1 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA
8113204 TAAACATTGA
Statistics
Matches: 237, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 237 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (102 bp):
ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
Found at i:8113025 original size:37 final size:37
Alignment explanation
Indices: 8112966--8113138 Score: 129
Period size: 37 Copynumber: 4.9 Consensus size: 37
8112956 TTGAAATGAG
*
8112966 TTTTGTCTCTC-TTGAGATAGTTTCCCTTGAAACAAAA
1 TTTTGTCTC-CATTGAGACAGTTTCCCTTGAAACAAAA
** *
8113003 TTCCGTCTCCATTGAGACAGTTTCTCTTGAAACATAAA
1 TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACA-AAA
* **
8113041 ---------CATTGAAAACA-TTTCCCTTGAAA-TGAA
1 TTTTGTCTCCATTG-AGACAGTTTCCCTTGAAACAAAA
*
8113068 TTTTGTCTCTC-TTGAGATAGTTTCCCTTGAAACAAAA
1 TTTTGTCTC-CATTGAGACAGTTTCCCTTGAAACAAAA
* *
8113105 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACA
8113139 TAAACATTGA
Statistics
Matches: 106, Mismatches: 14, Indels: 32
0.70 0.09 0.21
Matches are distributed among these distances:
27 2 0.02
29 16 0.15
30 4 0.04
35 3 0.03
36 17 0.16
37 61 0.58
38 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (37 bp):
TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACAAAA
Found at i:8113175 original size:167 final size:169
Alignment explanation
Indices: 8112986--8113303 Score: 543
Period size: 167 Copynumber: 1.9 Consensus size: 169
8112976 CTTGAGATAG
8112986 TTTCCCTTGAAACAAAATTCCGTCTC-CATTGAGACAGTTTCTCTTGAAACATAAACATTGAAAA
1 TTTCCCTTGAAACAAAATTCCGTCTCTC-TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAA
* * *
8113050 CATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCC
65 CATTTCACTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCC
8113115 CTTGAGACAG-TTTCTCTTGAAACATAAACATTGAAAACA
130 CTTGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
** *
8113154 TTTCCCTTGAAA-TGAATTCCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAACAAAATTCCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
*
8113218 ATTTCACTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCCC
66 ATTTCACTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
8113283 TTGAGACAGTTTTCTCTTGAA
131 TTGAGACAGTTTTCTCTTGAA
8113304 GCATCATCTT
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
167 117 0.83
168 24 0.17
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (169 bp):
TTTCCCTTGAAACAAAATTCCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
ATTTCACTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
TTGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:8113193 original size:65 final size:65
Alignment explanation
Indices: 8113109--8113268 Score: 284
Period size: 65 Copynumber: 2.5 Consensus size: 65
8113099 ACAAAATTTT
* *
8113109 GTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTCC
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCACTTGAAATGAATTCC
* *
8113174 GTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAACATTTCACTTGAAATGAATTTC
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCACTTGAAATGAATTCC
8113239 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
8113269 AAATTTTGTC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 90 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (65 bp):
GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCACTTGAAATGAATTCC
Found at i:8113276 original size:204 final size:197
Alignment explanation
Indices: 8112831--8113303 Score: 540
Period size: 204 Copynumber: 2.3 Consensus size: 197
8112821 TGCTCACCAT
* * *
8112831 TGTCTCTCTTGAGACAATTTCCCTTGAAACAAACTTTGTCTCTGTTGAGACAGTTTCCTTTGAAA
1 TGTCTCTCTTGAGAC-ATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA
*
8112896 CAAAATTTTTTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
65 CAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
* ** *
8112961 ATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCATTGAGACAGTTT
130 ATGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAA--------CCATTGAAACAGTTT
* *
8113026 CTCTTGAAACA
187 CACTTGAAAAA
*** * * ** *
8113037 T-AAAC-ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAA
1 TGTCTCTCTTG-AGACATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA
8113100 CAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
65 CAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
*
8113165 ATGAATTCCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAA-CATTGAAAACA-TTTCACTTG
130 ATGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACA-AAACCATTG-AAACAGTTTCACTTG
8113228 AAATGAA
193 AAA--AA
* * *
8113235 TTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTTCTCT
1 --T-GTCTCTCTTGAGACA-TTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGACAG-TTTCCCT
8113300 TGAA
60 TGAA
8113304 GCATCATCTT
Statistics
Matches: 224, Mismatches: 30, Indels: 27
0.80 0.11 0.10
Matches are distributed among these distances:
196 16 0.07
197 4 0.02
198 1 0.00
200 1 0.00
202 5 0.02
203 14 0.06
204 165 0.74
205 17 0.08
206 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (197 bp):
TGTCTCTCTTGAGACATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
AAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAA
TGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAACCATTGAAACAGTTTCACTTGAAA
AA
Found at i:8114066 original size:105 final size:105
Alignment explanation
Indices: 8113800--8114354 Score: 892
Period size: 105 Copynumber: 5.4 Consensus size: 105
8113790 GGTTTTAGCT
* *
8113800 AGAGTCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
*
8113865 CGAAGGGACCGCTGCCTGT---CAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
* *
8113902 AGAACCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
8113967 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
*
8114007 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAAAGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
* **
8114072 CGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCGC
66 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
* *
8114112 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
* *
8114177 CGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCTC
66 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
*
8114217 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
8114282 CGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTC
66 CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
** * *
8114317 AGATTCAATTTCAACTTCACGACGGAGGATATTGGACT
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
8114355 CTGAACAATG
Statistics
Matches: 431, Mismatches: 19, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
100 36 0.08
101 1 0.00
102 82 0.19
103 2 0.00
104 2 0.00
105 308 0.71
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTC
Found at i:8115506 original size:12 final size:11
Alignment explanation
Indices: 8115489--8115621 Score: 56
Period size: 12 Copynumber: 11.0 Consensus size: 11
8115479 ATTATATGGA
8115489 TATTTTATTCAT
1 TATTTTATT-AT
8115501 TATTTTTATTAT
1 TA-TTTTATTAT
*
8115513 TCATGTTATTAT
1 T-ATTTTATTAT
*
8115525 TATTATATGTAT
1 TATTTTAT-TAT
*
8115537 ATATATATATTAAAT
1 -TAT-TTTATT--AT
8115552 TATTTTCATT-T
1 TATTTT-ATTAT
*
8115563 GATTTT-TTACT
1 TATTTTATTA-T
8115574 ATATTTTATTAT
1 -TATTTTATTAT
*
8115586 TATTATATATAT
1 TATTTTAT-TAT
*
8115598 ATATTTCT-TTAA
1 -TATTT-TATTAT
8115610 TATTTTACTTAT
1 TATTTTA-TTAT
8115622 AAGTCTAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 34
0.68 0.07 0.25
Matches are distributed among these distances:
9 2 0.02
10 1 0.01
11 24 0.26
12 31 0.33
13 22 0.23
14 12 0.13
15 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8116923 original size:20 final size:20
Alignment explanation
Indices: 8116900--8116963 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 20
8116890 AACTTAAATC
8116900 AAAATAATTAAAATAA-ATAT
1 AAAATAATT-AAATAATATAT
*
8116920 AAAAT--TTTAATAATATAT
1 AAAATAATTAAATAATATAT
*
8116938 AAAATAATT-TAT-ATGATAT
1 AAAATAATTAAATAAT-ATAT
8116957 AAAATAA
1 AAAATAA
8116964 ATTTAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 5 0.13
18 13 0.34
19 13 0.34
20 7 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATAATTAAATAATATAT
Found at i:8116985 original size:14 final size:14
Alignment explanation
Indices: 8116957--8117047 Score: 58
Period size: 13 Copynumber: 7.1 Consensus size: 14
8116947 TATATGATAT
*
8116957 AAAATAAAT-TTAA
1 AAAATTAATATTAA
8116970 AAAATTAATATT--
1 AAAATTAATATTAA
*
8116982 AAAATTAATATCTAT
1 AAAATTAATAT-TAA
*
8116997 AATA-TAATATT-A
1 AAAATTAATATTAA
8117009 AAAATTAATATT--
1 AAAATTAATATTAA
* *
8117021 -TAATTTAT-TTAA
1 AAAATTAATATTAA
8117033 AAAA-TAATATTAA
1 AAAATTAATATTAA
8117046 AA
1 AA
8117048 TTAAAATCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
10 2 0.03
11 6 0.10
12 17 0.28
13 25 0.41
14 8 0.13
15 3 0.05
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAATTAATATTAA
Found at i:8117019 original size:27 final size:24
Alignment explanation
Indices: 8116972--8117043 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 24
8116962 AAATTTAAAA
8116972 AATTAATATT-AAAATTAATATCTAT
1 AATTAATATTAAAAATTAATAT-T-T
8116997 AATATAATATTAAAAATTAATATTT
1 AAT-TAATATTAAAAATTAATATTT
* *
8117022 AATTTAT-TTAAAAAATAATATT
1 AATTAATATTAAAAATTAATATT
8117044 AAAATTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.33
24 3 0.07
25 7 0.16
26 8 0.19
27 11 0.26
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
AATTAATATTAAAAATTAATATTT
Found at i:8117059 original size:22 final size:23
Alignment explanation
Indices: 8117034--8117082 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
8117024 TTTATTTAAA
*
8117034 AAATAATATTAAAAT-TAAAATC
1 AAATAATAATAAAATATAAAATC
* *
8117056 AAAT-ATAATATAATATAAAATT
1 AAATAATAATAAAATATAAAATC
8117078 AAATA
1 AAATA
8117083 TAAAACATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATAATAATAAAATATAAAATC
Found at i:8122736 original size:13 final size:13
Alignment explanation
Indices: 8122718--8122743 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8122708 CGAGCCATTC
8122718 ATTATCGAGGATT
1 ATTATCGAGGATT
8122731 ATTATCGAGGATT
1 ATTATCGAGGATT
8122744 GACGAATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
ATTATCGAGGATT
Found at i:8125868 original size:20 final size:20
Alignment explanation
Indices: 8125843--8125912 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
8125833 GCGAAGTTCG
8125843 CGTTGCGATTCATTCCAAAT
1 CGTTGCGATTCATTCCAAAT
*
8125863 CGTTGCGA-T-AGT-CAAAGTT
1 CGTTGCGATTCATTCCAAA--T
8125882 CGCGTTGCGATTCATTCCAAAT
1 --CGTTGCGATTCATTCCAAAT
8125904 CGTTGCGAT
1 CGTTGCGAT
8125913 AGGCGAAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
17 4 0.10
18 2 0.05
19 2 0.05
20 17 0.41
21 8 0.20
22 2 0.05
23 2 0.05
24 4 0.10
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (20 bp):
CGTTGCGATTCATTCCAAAT
Found at i:8125883 original size:41 final size:41
Alignment explanation
Indices: 8125783--8126038 Score: 377
Period size: 41 Copynumber: 6.1 Consensus size: 41
8125773 ATTTGCAACA
***
8125783 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTTGCAACG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAA--T-CGTTG
8125827 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
* *
8125868 CGATAGTCAAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
* *
8125909 CGATAGGCGAAGTTCGCATTGCGATTCATTCCAATTCGTTG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
* * *
8125950 CAACAGGCGAAGTTCGCGTTGCGATTCATTCCAATTCGTTG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
*
8125991 CGACAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTG
1 CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAA-TCGTTG
8126033 CGATAG
1 CGATAG
8126039 TCCAAATATT
Statistics
Matches: 196, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
41 149 0.76
42 12 0.06
44 35 0.18
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (41 bp):
CGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTTG
Found at i:8126012 original size:21 final size:21
Alignment explanation
Indices: 8125945--8126014 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
8125935 CATTCCAATT
*
8125945 CGTTGCAACAGGCGAAGTTCG
1 CGTTGCGACAGGCGAAGTTCG
** *
8125966 CGTTGCGATTCATTCCAA-TT--
1 CGTTGCGA--CAGGCGAAGTTCG
8125986 CGTTGCGACAGGCGAAGTTCG
1 CGTTGCGACAGGCGAAGTTCG
8126007 CGTTGCGA
1 CGTTGCGA
8126015 TTCATTCCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
18 5 0.14
19 2 0.05
20 8 0.22
21 15 0.41
22 2 0.05
23 5 0.14
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (21 bp):
CGTTGCGACAGGCGAAGTTCG
Found at i:8126997 original size:41 final size:41
Alignment explanation
Indices: 8126932--8127174 Score: 396
Period size: 41 Copynumber: 5.9 Consensus size: 41
8126922 ATTTGGACTA
* *
8126932 TCGCAACGAATTTGGAATGAATCGCAACGCGAACTTCGCCTA
1 TCGCAACGAA-TTGGAATGAATCGCAATGCGAACTTCGCCTG
** * *
8126974 TTTCAATGAATTGGAATGAATCGCAATTCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
*
8127015 TCGCAACAAATTGGAATGAATCGCAATGCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
8127056 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
*
8127097 TCGCAACGAATTGGAATGAATCACAATGCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
*
8127138 TCGCAACGAATTGGAATGAATCGCAACGCGAACTTCG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCG
8127175 ACTATCGCGT
Statistics
Matches: 186, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
41 179 0.96
42 7 0.04
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
Found at i:8129478 original size:43 final size:42
Alignment explanation
Indices: 8129430--8129577 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
8129420 TTGGAGCTCC
* *
8129430 CATTTTTTCATCTTTATAATTAGGTTTTTAAT-TTTTTAAATCT
1 CATTTTTT-ATCTTTATAATTAGG-TCTTAATATTATTAAATCT
* * * *
8129473 TATTTTTTATATTTATAATGGAGGTCTTAATATTATTCAATCT
1 CATTTTTTATCTTTATAAT-TAGGTCTTAATATTATTAAATCT
* * * *
8129516 CACTTTTTATCTTTATAATTGAAGTCTCTAAT-TTTTTCAATC-
1 CATTTTTTATCTTTATAATT-AGGTCT-TAATATTATTAAATCT
* *
8129558 CCTTTTTTACCTTTATAATT
1 CATTTTTTATCTTTATAATT
8129578 GAGGCCCCTA
Statistics
Matches: 86, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 33 0.38
43 49 0.57
44 4 0.05
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.56
Consensus pattern (42 bp):
CATTTTTTATCTTTATAATTAGGTCTTAATATTATTAAATCT
Found at i:8129717 original size:129 final size:128
Alignment explanation
Indices: 8129508--8129844 Score: 373
Period size: 129 Copynumber: 2.6 Consensus size: 128
8129498 CTTAATATTA
* * * * * ** *
8129508 TTCAATCTCACTTTTTATCTTTAT-AATTGAAGTCTCTAA-TTTTTTCAATC-CCTTTTTTACCT
1 TTCAATCTCACTTTCTAACTTT-TCAATTGAGGCCCCTAAGTTTTTTCAATCTCAATTTCTACCT
**
8129570 TTATAATTGAGGCCCCTAATTTTGTAATCTCAC-TTTT-AACTTTATAATTGAGGCTTTTAAGTT
65 TTATAATTGAGGCCCCTAATTTT-TAAT-TCACTTTTTCAACTTTATAATTGAGGCCCTTAAGTT
8129633 T
128 T
*
8129634 TTCCAATCTCACTTTCTACCTTTTCAATTGAGGCCCCTAAGTTTTTTCAATCTCAATTTCTACCT
1 TT-CAATCTCACTTTCTAACTTTTCAATTGAGGCCCCTAAGTTTTTTCAATCTCAATTTCTACCT
* * *
8129699 TTATAATTGAGGGCCCTAATTTTTTATTCACTTTTTTCAACTTTATAATTGAGGCCCTTGAGTTT
65 TTATAATTGAGGCCCCTAATTTTTAATTCAC-TTTTTCAACTTTATAATTGAGGCCCTTAAGTTT
* * * * * *
8129764 TTTAATCTCACTTTC-AAATTTTCTAATTGAGGGCCCTAAGTTTTTTCGATCTCAA-TTATACAT
1 TTCAATCTCACTTTCTAACTTTTC-AATTGAGGCCCCTAAGTTTTTTCAATCTCAATTTCTACCT
* *
8129827 TTACAATTTAGGCCCCTA
65 TTATAATTGAGGCCCCTA
8129845 TTTGTTTCAA
Statistics
Matches: 180, Mismatches: 23, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
126 3 0.02
127 34 0.19
128 41 0.23
129 76 0.42
130 26 0.14
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.46
Consensus pattern (128 bp):
TTCAATCTCACTTTCTAACTTTTCAATTGAGGCCCCTAAGTTTTTTCAATCTCAATTTCTACCTT
TATAATTGAGGCCCCTAATTTTTAATTCACTTTTTCAACTTTATAATTGAGGCCCTTAAGTTT
Found at i:8129844 original size:43 final size:41
Alignment explanation
Indices: 8129563--8129844 Score: 156
Period size: 44 Copynumber: 6.6 Consensus size: 41
8129553 CAATCCCTTT
* * * *
8129563 TTTACCTTTATAATTGAGGCCCCTAA-TTTTGTAATCTCACT
1 TTTACATTTACAATTGAGGCCCCTAAGTTTTTTAATCTCA-A
* *** * *
8129604 TTTA-ACTTTATAATTGAGGCTTTTAAGTTTTTCCAATCTCACT
1 TTTACA-TTTACAATTGAGGCCCCTAAGTTTTT-TAATCTCA-A
* *
8129647 TTCTACCTTTTCAATTGAGGCCCCTAAGTTTTTTCAATCTCAA
1 TT-TACATTTACAATTGAGGCCCCTAAGTTTTTT-AATCTCAA
* * * * * **
8129690 TTTCTACCTTTATAATTGAGGGCCCTAA-TTTTTTATTCACTT
1 -TT-TACATTTACAATTGAGGCCCCTAAGTTTTTTAATCTCAA
* * * * *
8129732 TTTTCAACTTTATAATTGAGGCCCTTGAGTTTTTTAATCTCAC
1 TTTAC-A-TTTACAATTGAGGCCCCTAAGTTTTTTAATCTCAA
* * * *
8129775 TTTCAAATTTTCTAATTGAGGGCCCTAAGTTTTTTCGATCTCAA
1 TTT-ACATTTAC-AATTGAGGCCCCTAAGTTTTTT-AATCTCAA
*
8129819 TTATACATTTACAATTTAGGCCCCTA
1 TT-TACATTTACAATTGAGGCCCCTA
8129845 TTTGTTTCAA
Statistics
Matches: 184, Mismatches: 43, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
40 2 0.01
41 23 0.12
42 28 0.15
43 62 0.34
44 68 0.37
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.45
Consensus pattern (41 bp):
TTTACATTTACAATTGAGGCCCCTAAGTTTTTTAATCTCAA
Found at i:8129855 original size:171 final size:171
Alignment explanation
Indices: 8129508--8129894 Score: 444
Period size: 171 Copynumber: 2.3 Consensus size: 171
8129498 CTTAATATTA
* * * * * * *
8129508 TTCAATCTCACTTTTTATCTTTATAATTGAAGTCTCTAATTTTTTCAATCCCTTTTTTACCTTTA
1 TTCAATCTCAATTTCTACCTTTATAATTGAAGGCCCTAATTTTTTCAATCACTTTTTTAACTTTA
* **
8129573 TAATTGAGGCCCCTAATTTTGTAATCTCACTTTTAACTTTATAATTGAGGCTTTTAAGTTTTTCC
66 TAATTGAGGCCCCTAATTTTGTAATCTCACTTTAAACTTTATAATTGAGGCTCCTAAGTTTTTCC
* * * *
8129638 AATCTCACTTTCTACCTTTTCAATTGAGGCCCCTAAGTTTT
131 AATCTCACATTATACATTTACAATTGAGGCCCCTAAGTTTT
* *
8129679 TTCAATCTCAATTTCTACCTTTATAATTGAGGGCCCTAATTTTTT-ATTCACTTTTTTCAACTTT
1 TTCAATCTCAATTTCTACCTTTATAATTGAAGGCCCTAATTTTTTCAATCACTTTTTT-AACTTT
* * * * *
8129743 ATAATTGAGGCCCTTGAGTTTTTTAATCTCACTTTCAAATTTTCTAATTGAGGGC-CCTAAGTTT
65 ATAATTGAGGCCCCT-AATTTTGTAATCTCACTTT-AAACTTTATAATTGA-GGCTCCTAAGTTT
* * *
8129807 TTTCGATCTCA-ATTATACATTTACAATTTAGGCCCCT-A-TTTGT
127 TTCCAATCTCACATTATACATTTACAATTGAGGCCCCTAAGTTT-T
* *
8129850 TTCAATCTCGATTTCTGCCTTTATAATT-AAGGCCTCTAATTTTTT
1 TTCAATCTCAATTTCTACCTTTATAATTGAAGGCC-CTAATTTTTT
8129895 TTTACAATTT
Statistics
Matches: 183, Mismatches: 27, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
170 18 0.10
171 96 0.52
172 38 0.21
173 28 0.15
174 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (171 bp):
TTCAATCTCAATTTCTACCTTTATAATTGAAGGCCCTAATTTTTTCAATCACTTTTTTAACTTTA
TAATTGAGGCCCCTAATTTTGTAATCTCACTTTAAACTTTATAATTGAGGCTCCTAAGTTTTTCC
AATCTCACATTATACATTTACAATTGAGGCCCCTAAGTTTT
Found at i:8129872 original size:129 final size:129
Alignment explanation
Indices: 8129543--8129883 Score: 324
Period size: 129 Copynumber: 2.7 Consensus size: 129
8129533 ATTGAAGTCT
** * * * *
8129543 CTAA-TTTTTTCAATC-CCTTTTTTACCTTTATAATTGAGGCCCCTAATTTTGTAATCTCACTTT
1 CTAAGTTTTTTCAATCTCAATTTATACATTTACAATTGAGGCCCCTAATTTT-TTAT-TCACTTT
* ** **
8129606 -T-AACTTTATAATTGAGGCTTTTAAGTTTTTCCAATCTCACTTTCTACCTTTTCAATTGAGGCC
64 CTGCACTTTATAATTGAGGCCCTTAAGTTTTTCCAATCTCACTTTCTAAATTTTCAATTGAGGCC
8129669 C
129 C
* * * * *
8129670 CTAAGTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGGCCCTAATTTTTTATTCACTTTTT
1 CTAAGTTTTTTCAATCTCAATTTATACATTTACAATTGAGGCCCCTAATTTTTTATTCACTTTCT
* * * *
8129735 TCAACTTTATAATTGAGGCCCTTGAGTTTTT-TAATCTCACTTTC-AAATTTTCTAATTGAGGGC
66 GC-ACTTTATAATTGAGGCCCTTAAGTTTTTCCAATCTCACTTTCTAAATTTTC-AATTGAGGCC
8129798 C
129 C
* *
8129799 CTAAGTTTTTTCGATCTCAA-TTATACATTTACAATTTAGGCCCCT-ATTTGTTTCAATCTCGA-
1 CTAAGTTTTTTCAATCTCAATTTATACATTTACAATTGAGGCCCCTAATTT-TTT--AT-TC-AC
*
8129861 TTTCTGC-CTTTATAATTAAGGCC
61 TTTCTGCACTTTATAATTGAGGCC
8129884 TCTAATTTTT
Statistics
Matches: 181, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
127 15 0.08
128 44 0.24
129 87 0.48
130 27 0.15
131 7 0.04
132 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.46
Consensus pattern (129 bp):
CTAAGTTTTTTCAATCTCAATTTATACATTTACAATTGAGGCCCCTAATTTTTTATTCACTTTCT
GCACTTTATAATTGAGGCCCTTAAGTTTTTCCAATCTCACTTTCTAAATTTTCAATTGAGGCCC
Found at i:8137236 original size:2 final size:2
Alignment explanation
Indices: 8137224--8137254 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8137214 TCTAACGTGG
*
8137224 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8137255 TTAAATTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8166560 original size:186 final size:184
Alignment explanation
Indices: 8166239--8166610 Score: 685
Period size: 186 Copynumber: 2.0 Consensus size: 184
8166229 TTAAAAGATT
8166239 ACAACATGCATGATTATTATATATAACAACCCTCTTTTTTTTGTGAATGAATTATTTAGTATGAT
1 ACAACATGCATGATTATTATATATAACAACCCTCTTTTTTTTGTGAATGAATTATTTAGTATGAT
*
8166304 GTTTTAAAACGTTTATTATAAAATAAATTGATACATGAAATCAGATTAACCGATCTACTGAATAT
66 GTTTTAAAACGTTTATTATAAAATAAATTGATACATGAAATCAGATTAACCGATCTAATGAATAT
8166369 TAGAAATTTATCTAT-ATT-ATAGCCTATACTAAAAATGCCGAATTCAAAATTA
131 TAGAAATTTATCTATAATTAATAGCCTATACTAAAAATGCCGAATTCAAAATTA
8166421 ACAACATGCATGATTATTATATATAACAACCCTCTTTTTTTTGTGAATGAATTATTTAGTATGAT
1 ACAACATGCATGATTATTATATATAACAACCCTCTTTTTTTTGTGAATGAATTATTTAGTATG--
8166486 ATTGTTTTAAAAACGTTTATTATAAAATAAATTGATACATGAAATCAGATTAACCGATCTAATGA
64 A-TGTTTT-AAAACGTTTATTATAAAATAAATTGATACATGAAATCAGATTAACCGATCTAATGA
8166551 ATATTAGAAATTTATCTATAATTAATAGCCTATACTAAAAATGCCGAATTCAAAATTA
127 ATATTAGAAATTTATCTATAATTAATAGCCTATACTAAAAATGCCGAATTCAAAATTA
8166609 AC
1 AC
8166611 TTTTAATATA
Statistics
Matches: 183, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
182 63 0.34
184 1 0.01
185 6 0.03
186 74 0.40
187 3 0.02
188 36 0.20
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.38
Consensus pattern (184 bp):
ACAACATGCATGATTATTATATATAACAACCCTCTTTTTTTTGTGAATGAATTATTTAGTATGAT
GTTTTAAAACGTTTATTATAAAATAAATTGATACATGAAATCAGATTAACCGATCTAATGAATAT
TAGAAATTTATCTATAATTAATAGCCTATACTAAAAATGCCGAATTCAAAATTA
Found at i:8168776 original size:16 final size:16
Alignment explanation
Indices: 8168741--8168774 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8168731 AATCCAAATC
8168741 AAATGAGAAAGAGATG
1 AAATGAGAAAGAGATG
*
8168757 AAATGATAAAG-GATG
1 AAATGAGAAAGAGATG
8168772 AAA
1 AAA
8168775 ATAGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (16 bp):
AAATGAGAAAGAGATG
Found at i:8173223 original size:2 final size:2
Alignment explanation
Indices: 8173216--8173258 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8173206 GTTTCTTATT
8173216 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8173258 T
1 T
8173259 GGGTTATGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8175984 original size:27 final size:27
Alignment explanation
Indices: 8175954--8176070 Score: 207
Period size: 27 Copynumber: 4.3 Consensus size: 27
8175944 TTAGTTATTA
8175954 TGGAGCTCAAGGGTACTTCGGTCATAT
1 TGGAGCTCAAGGGTACTTCGGTCATAT
8175981 TGGAGCTCAAGGGTACTTCGGTCATAT
1 TGGAGCTCAAGGGTACTTCGGTCATAT
* *
8176008 TTGAGCTCAAGGGCACTTCGGTCATAT
1 TGGAGCTCAAGGGTACTTCGGTCATAT
8176035 TGGAGCTCAAGGGTACTTCGGTCATAT
1 TGGAGCTCAAGGGTACTTCGGTCATAT
*
8176062 TAGAGCTCA
1 TGGAGCTCA
8176071 GAGTATTTTG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (27 bp):
TGGAGCTCAAGGGTACTTCGGTCATAT
Found at i:8177048 original size:32 final size:30
Alignment explanation
Indices: 8177012--8177089 Score: 93
Period size: 32 Copynumber: 2.5 Consensus size: 30
8177002 AAACTTAGTT
*
8177012 AAAGTCAACTAGTTTGATCAACGATTCAAGTC
1 AAAGTCAA-TAGTTTGATCAA-GAGTCAAGTC
* * *
8177044 AAAGTCAATGAGTTTGGTCAATAGTCAGGTC
1 AAAGTCAAT-AGTTTGATCAAGAGTCAAGTC
8177075 AAAGTCAATAGTTTG
1 AAAGTCAATAGTTTG
8177090 GGTCAAAGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
30 6 0.15
31 17 0.41
32 18 0.44
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (30 bp):
AAAGTCAATAGTTTGATCAAGAGTCAAGTC
Found at i:8183071 original size:6 final size:6
Alignment explanation
Indices: 8183060--8183091 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8183050 GATTACAGAT
8183060 AAATGG AAATGG AAATGG AAATGG AAATGG AA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AA
8183092 GATAATACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.31, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:8185887 original size:2 final size:2
Alignment explanation
Indices: 8185882--8185913 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8185872 ATTTTTTTTA
8185882 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8185914 GAAAAAAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8186700 original size:29 final size:29
Alignment explanation
Indices: 8186658--8186713 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
8186648 AGTGTGGTCA
8186658 TAGGTCGCCATGCACTCCGGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
*
8186687 TAGGTCGCCATGCACTTCGGGCGACCT
1 TAGGTCGCCATGCACTCCGGGCGACCT
8186714 ACCCTTGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.34, G:0.30, T:0.21
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCGGGCGACCTTG
Found at i:8186796 original size:29 final size:29
Alignment explanation
Indices: 8186763--8186852 Score: 135
Period size: 29 Copynumber: 3.1 Consensus size: 29
8186753 ACATGCACGT
* *
8186763 CCTTGTAGGTCGTCATGCCCTCAGGGCAA
1 CCTTGTAGGTCGTCATGCCCTCCGGGCGA
*
8186792 CCTTGTAGGTTGTCATGCCCTCCGGGCGA
1 CCTTGTAGGTCGTCATGCCCTCCGGGCGA
* *
8186821 CCTTGTAGGTCGCCATGCACTCCGGGCGA
1 CCTTGTAGGTCGTCATGCCCTCCGGGCGA
8186850 CCT
1 CCT
8186853 ACCCTCGCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.13, C:0.33, G:0.29, T:0.24
Consensus pattern (29 bp):
CCTTGTAGGTCGTCATGCCCTCCGGGCGA
Found at i:8186930 original size:23 final size:23
Alignment explanation
Indices: 8186870--8186930 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 23
8186860 CTCGACTGCC
** * *
8186870 CTCGGATTCCCTCGCATAGCTCG
1 CTCGGATGACCTCGGATAACTCG
* *
8186893 CTCGGTTGCCCTCGGATAACTCG
1 CTCGGATGACCTCGGATAACTCG
*
8186916 TTCGGATGACCTCGG
1 CTCGGATGACCTCGG
8186931 TCGGATGGCC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.13, C:0.34, G:0.26, T:0.26
Consensus pattern (23 bp):
CTCGGATGACCTCGGATAACTCG
Found at i:8186944 original size:10 final size:10
Alignment explanation
Indices: 8186931--8186987 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
8186921 ATGACCTCGG
8186931 TCGGATGGCC
1 TCGGATGGCC
8186941 TCGGAT-GCTC
1 TCGGATGGC-C
*
8186951 TTGGATGGCC
1 TCGGATGGCC
*
8186961 TCAGAT-GCTC
1 TCGGATGGC-C
*
8186971 TCAGATGGCC
1 TCGGATGGCC
8186981 TCGGATG
1 TCGGATG
8186988 CCCAGCGTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 4 0.10
10 31 0.79
11 4 0.10
ACGTcount: A:0.14, C:0.26, G:0.33, T:0.26
Consensus pattern (10 bp):
TCGGATGGCC
Found at i:8186958 original size:20 final size:20
Alignment explanation
Indices: 8186931--8186988 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
8186921 ATGACCTCGG
8186931 TCGGATGGCCTCGGATGCTC
1 TCGGATGGCCTCGGATGCTC
* *
8186951 TTGGATGGCCTCAGATGCTC
1 TCGGATGGCCTCGGATGCTC
*
8186971 TCAGATGGCCTCGGATGC
1 TCGGATGGCCTCGGATGC
8186989 CCAGCGTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.14, C:0.28, G:0.33, T:0.26
Consensus pattern (20 bp):
TCGGATGGCCTCGGATGCTC
Found at i:8187259 original size:13 final size:13
Alignment explanation
Indices: 8187241--8187340 Score: 55
Period size: 13 Copynumber: 7.5 Consensus size: 13
8187231 AATTTAATGG
8187241 ATTTTATTATTAA
1 ATTTTATTATTAA
*
8187254 ATTTTAAATTAATATA
1 ATTTT--ATTATTA-A
* *
8187270 ATTCTAATATTAA
1 ATTTTATTATTAA
8187283 ATTTTAATT-TT-A
1 ATTTT-ATTATTAA
*
8187295 A-TTTA-AACTTAA
1 ATTTTATTA-TTAA
8187307 ATTTTATTATTAA
1 ATTTTATTATTAA
* *
8187320 ATATTAATCTAATAA
1 AT-TTTAT-TATTAA
8187335 ATTTTA
1 ATTTTA
8187341 ATTTAAACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
10 1 0.02
11 5 0.08
12 4 0.06
13 22 0.34
14 15 0.23
15 13 0.20
16 5 0.08
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTATTATTAA
Found at i:8187341 original size:15 final size:14
Alignment explanation
Indices: 8187241--8187343 Score: 58
Period size: 15 Copynumber: 7.6 Consensus size: 14
8187231 AATTTAATGG
*
8187241 ATTTT-ATTATTAA
1 ATTTTAATTAATAA
8187254 ATTTTAAATTAATATA
1 ATTTT-AATTAATA-A
* *
8187270 ATTCTAA-TATTAA
1 ATTTTAATTAATAA
*
8187283 ATTTTAATT--TTA
1 ATTTTAATTAATAA
* *
8187295 ATTTAAACT--TAA
1 ATTTTAATTAATAA
*
8187307 ATTTT-ATTATTAA
1 ATTTTAATTAATAA
*
8187320 ATATTAATCTAATAA
1 ATTTTAAT-TAATAA
8187335 ATTTTAATT
1 ATTTTAATT
8187344 TAAACTTTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
11 2 0.03
12 15 0.22
13 19 0.28
14 8 0.12
15 20 0.29
16 5 0.07
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTTTAATTAATAA
Found at i:8187656 original size:21 final size:20
Alignment explanation
Indices: 8187627--8187667 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8187617 TAATTAAAAT
*
8187627 TAATTTTATGATATATTTTA
1 TAATTTTATGATATAATTTA
8187647 TAATATTTATGATATAATTTA
1 TAAT-TTTATGATATAATTTA
8187668 AAAATATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
TAATTTTATGATATAATTTA
Found at i:8191093 original size:22 final size:21
Alignment explanation
Indices: 8191050--8191104 Score: 85
Period size: 22 Copynumber: 2.6 Consensus size: 21
8191040 GGATGAGAAC
8191050 TTTAATTTC-CTTGAAGGGTTG
1 TTTAATTTCTC-TGAAGGGTTG
8191071 TTTAATTTCTCTGAAGGGGTTG
1 TTTAATTTCTCTGAA-GGGTTG
8191093 TTTAATTTCTCT
1 TTTAATTTCTCT
8191105 CTATAACTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.18, C:0.11, G:0.20, T:0.51
Consensus pattern (21 bp):
TTTAATTTCTCTGAAGGGTTG
Found at i:8196408 original size:16 final size:16
Alignment explanation
Indices: 8196384--8196414 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8196374 TTCTAAATTT
*
8196384 TTTTTGAGTTCAAGTC
1 TTTTCGAGTTCAAGTC
8196400 TTTTCGAGTTCAAGT
1 TTTTCGAGTTCAAGT
8196415 TTCAATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (16 bp):
TTTTCGAGTTCAAGTC
Found at i:8213555 original size:21 final size:19
Alignment explanation
Indices: 8213530--8213575 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8213520 TTATAATTTA
*
8213530 AATTTGATTTGAAATTTTTTG
1 AATTTGAGTT-AAA-TTTTTG
8213551 AATTTTGAGTTAAATTTTTG
1 AA-TTTGAGTTAAATTTTTG
8213571 AATTT
1 AATTT
8213576 TTAAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 8 0.35
21 5 0.22
22 7 0.30
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (19 bp):
AATTTGAGTTAAATTTTTG
Found at i:8219169 original size:30 final size:32
Alignment explanation
Indices: 8219115--8219180 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
8219105 TAAAATTCTC
*
8219115 AAAAAACACCTTAAATTTCATAAAATTTCAAA
1 AAAAAACACCTTAAATTTCATAAAAATTCAAA
* * *
8219147 AAAAAACTCC-TAAA-TTCCTAAAAATTCCAA
1 AAAAAACACCTTAAATTTCATAAAAATTCAAA
8219177 AAAA
1 AAAA
8219181 TTTTAGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 17 0.57
31 4 0.13
32 9 0.30
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (32 bp):
AAAAAACACCTTAAATTTCATAAAAATTCAAA
Found at i:8220000 original size:30 final size:29
Alignment explanation
Indices: 8219966--8220039 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
8219956 TTATTTATGA
* *
8219966 TTTTTGGGATTTTTAGGAATTTAGGAGTTT
1 TTTTTTGGATTTTTAGGAATTTAAG-GTTT
*
8219996 TTTTTTAGATTTTCT-GGAATTTAAGGTTT
1 TTTTTTGGATTTT-TAGGAATTTAAGGTTT
*
8220025 TTTTTTGGAATTTTA
1 TTTTTTGGATTTTTA
8220040 ATAATTTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
28 1 0.03
29 15 0.41
30 20 0.54
31 1 0.03
ACGTcount: A:0.20, C:0.01, G:0.20, T:0.58
Consensus pattern (29 bp):
TTTTTTGGATTTTTAGGAATTTAAGGTTT
Found at i:8221219 original size:182 final size:182
Alignment explanation
Indices: 8220928--8221404 Score: 688
Period size: 182 Copynumber: 2.6 Consensus size: 182
8220918 ATCCAAATTT
* * * ** * * *
8220928 AAAATGTATCGATCCATATCAATATAACAAGTAAAAATACGATAAAACCGGTCA-CGAAAAGACA
1 AAAATGTATCGATCCACAACGATATAACTGGTAAAAATATGATAAAACCGGT-ATCGAAATGATA
* * * * * *
8220992 ATACCGATAAAACCCTACCGGATATATTGAACGTGTCGATACTTTAATATAAGGGTCGACACTTT
65 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTT
8221057 GTGAATTTAAAAGAAAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTATA
130 GTGAATTTAAAAGAAAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTATA
* *
8221110 AAAATGTATCGATCTACAACGATATAACTGGTAAAAATATGACAAAACCGGTATCGAAATGATAA
1 AAAATGTATCGATCCACAACGATATAACTGGTAAAAATATGATAAAACCGGTATCGAAATGATAA
* * *
8221175 AACCGGTAAAGCGCTACCGGATATATTTAAAGTGTCGGTACTTTAATATAAGTATCGACACTTTG
66 AACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTTG
* * * *
8221240 TGAATTTAAAAGAGAAGTAGTTTTAGCGCTTATAAAGTGTCGATACTTTATA
131 TGAATTTAAAAGAAAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTATA
*
8221292 AAAATGTATCGATCCACAACGATATAA-TAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAATGTATCGATCCACAACGATATAACT-GGTAAAAATATGATAAAACCGGTATCGAAATGATA
* *
8221356 AAATCGGTAAAGCGCTAGCGGATATATTGAAAGTGTCGATACTTTAATA
65 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATA
8221405 AGTACGTGTA
Statistics
Matches: 263, Mismatches: 30, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
181 2 0.01
182 261 0.99
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAATGTATCGATCCACAACGATATAACTGGTAAAAATATGATAAAACCGGTATCGAAATGATAA
AACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTTG
TGAATTTAAAAGAAAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTATA
Found at i:8221344 original size:20 final size:19
Alignment explanation
Indices: 8221321--8221366 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8221311 CGATATAATA
8221321 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
* *
8221341 GGTATCAAAATGATAAAATC
1 GGTA-AAAAATGATAAAACC
8221361 GGTAAA
1 GGTAAA
8221367 GCGCTAGCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 18 0.82
21 3 0.14
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:8221485 original size:21 final size:21
Alignment explanation
Indices: 8221459--8221513 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
8221449 TATCCTTTCG
*
8221459 AAAGTATCAACACCTGACATA
1 AAAGTATCGACACCTGACATA
8221480 AAAGTATCGACACCTGACATA
1 AAAGTATCGACACCTGACATA
8221501 AAAGTATCGACAC
1 AAAGTATCGACAC
8221514 TTTGGTAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (21 bp):
AAAGTATCGACACCTGACATA
Found at i:8223719 original size:21 final size:21
Alignment explanation
Indices: 8223693--8223734 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8223683 AGCTTCCATC
8223693 CTCGGTGAAGGATGGAGAGAG
1 CTCGGTGAAGGATGGAGAGAG
8223714 CTCGGTGAAGGATGGAGAGAG
1 CTCGGTGAAGGATGGAGAGAG
8223735 ACACGGCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.48, T:0.14
Consensus pattern (21 bp):
CTCGGTGAAGGATGGAGAGAG
Found at i:8225310 original size:3 final size:3
Alignment explanation
Indices: 8225302--8225342 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
8225292 CATCTCGTTC
*
8225302 TTA TTA TTA TTA -TA TGTA TTA TTA TTA TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
8225343 TTACATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8225350 original size:12 final size:12
Alignment explanation
Indices: 8225302--8225351 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
8225292 CATCTCGTTC
*
8225302 TTATTATTATTA
1 TTATTATTAATA
*
8225314 -TATGTATTATTA
1 TTAT-TATTAATA
8225326 TTATTATTAATA
1 TTATTATTAATA
8225338 TTATT-TTACATA
1 TTATTATTA-ATA
8225350 TT
1 TT
8225352 TGGCAGGCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
11 6 0.18
12 25 0.74
13 3 0.09
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATTATTAATA
Done.