Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3773412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 19
Found at i:2919736 original size:36 final size:35
Alignment explanation
Indices: 2919678--2919753 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 35
2919668 ATAATGTCTA
*
2919678 TGGTTCAGCCATTGTTCCTTCTTCTT-TTGCTTCTTT
1 TGGTTCAGCCATTGTT-CTTCTTCTTCTTG-TTCTTC
2919714 TGGTTCAGCCATTGCCTT-TTCTTCTTCTTGTTCTTC
1 TGGTTCAGCCATTG--TTCTTCTTCTTCTTGTTCTTC
2919750 TGGT
1 TGGT
2919754 GTATGATGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
36 31 0.86
37 3 0.08
38 2 0.06
ACGTcount: A:0.05, C:0.25, G:0.16, T:0.54
Consensus pattern (35 bp):
TGGTTCAGCCATTGTTCTTCTTCTTCTTGTTCTTC
Found at i:2920751 original size:30 final size:30
Alignment explanation
Indices: 2920715--2920841 Score: 139
Period size: 31 Copynumber: 4.2 Consensus size: 30
2920705 AATACAGTTT
* *
2920715 CCCAACATTTAATCCGTTTAT-AATATGATC
1 CCCAACATTTAATCCATTT-TCAATATGGTC
* *
2920745 CCCAACATTTACTCCATTTTCAATATGGCC
1 CCCAACATTTAATCCATTTTCAATATGGTC
* *
2920775 CCCTAACATTTAGTCTATTTTCAATATGGTC
1 CCC-AACATTTAATCCATTTTCAATATGGTC
* * *
2920806 CCTCAACATTTAGTCTATTTTCAATATGGTT
1 CC-CAACATTTAATCCATTTTCAATATGGTC
2920837 CCCAA
1 CCCAA
2920842 TGTAACGTTG
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
29 1 0.01
30 30 0.35
31 54 0.63
32 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (30 bp):
CCCAACATTTAATCCATTTTCAATATGGTC
Found at i:2920835 original size:31 final size:30
Alignment explanation
Indices: 2920736--2920841 Score: 149
Period size: 31 Copynumber: 3.5 Consensus size: 30
2920726 ATCCGTTTAT
* * *
2920736 AATATGATCCCCAACATTTACTCCATTTTC
1 AATATGGTCCCCAACATTTAGTCTATTTTC
*
2920766 AATATGGCCCCCTAACATTTAGTCTATTTTC
1 AATATGGTCCCC-AACATTTAGTCTATTTTC
2920797 AATATGGTCCCTCAACATTTAGTCTATTTTC
1 AATATGGTCCC-CAACATTTAGTCTATTTTC
*
2920828 AATATGGTTCCCAA
1 AATATGGTCCCCAA
2920842 TGTAACGTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
30 13 0.19
31 54 0.79
32 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AATATGGTCCCCAACATTTAGTCTATTTTC
Found at i:2921848 original size:224 final size:217
Alignment explanation
Indices: 2921432--2921864 Score: 717
Period size: 224 Copynumber: 2.0 Consensus size: 217
2921422 TATCTATCCT
* *
2921432 TTTTATAAAAGTGTCCATACTTATTTCATGTGAAAATATATTATATTATCTTTAGTTAATATTGT
1 TTTTATAAAAGTGTCCATACTTATTTCATGTGAAAACATATTATATTATATTTAGTTAATATTGT
** *
2921497 TAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATG
66 TAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTTGTGTAAATA
2921562 AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTGAAACATAAATT
131 AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTGAAACATAAATT
2921627 ACATAACTTTCAAAAAAATATCA
196 ACATAACTTT-AAAAAAATATCA
*
2921650 TTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGGTTAATA
1 TTTTATAAAAGTGTCCATACTTATTTCA-TG-TGAAAACATA-TTA-TATTATATTTAGTTAATA
2921715 TTGTTAAATTT-AAATGCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTTGTG
62 TTGTT-AATTTAAAAT-CTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTTGTG
2921779 TAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAA-TTGAAA
125 TAAA-TAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTTGAAA
2921843 CATAAATTACATAACTTTAAAA
188 CATAAATTACATAACTTTAAAA
2921865 GCAGTTTTAA
Statistics
Matches: 201, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
218 28 0.14
219 2 0.01
220 9 0.04
221 3 0.01
222 25 0.12
223 59 0.29
224 72 0.36
225 3 0.01
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.39
Consensus pattern (217 bp):
TTTTATAAAAGTGTCCATACTTATTTCATGTGAAAACATATTATATTATATTTAGTTAATATTGT
TAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTTGTGTAAATA
AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTGAAACATAAATT
ACATAACTTTAAAAAAATATCA
Found at i:2921951 original size:20 final size:19
Alignment explanation
Indices: 2921928--2921973 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
2921918 CGATATACCA
2921928 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
2921948 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
2921968 GGTAAA
1 GGTAAA
2921974 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:2924453 original size:33 final size:33
Alignment explanation
Indices: 2924411--2924476 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2924401 AAATAGATGG
*
2924411 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
2924444 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
2924477 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:2926299 original size:19 final size:19
Alignment explanation
Indices: 2926255--2926298 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
2926245 AATGTCGAGT
2926255 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
2926274 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
2926293 T-ATTTT
1 TAATTTT
2926299 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:2926751 original size:199 final size:199
Alignment explanation
Indices: 2926381--2926994 Score: 1138
Period size: 199 Copynumber: 3.1 Consensus size: 199
2926371 TTAAGGGTCA
* *
2926381 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTATCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
2926446 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* * * *
2926511 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGTATCTATCTAAA
130 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
2926576 TAATG
195 TAATG
2926581 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
*
2926646 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
2926711 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
2926776 AATG
196 AATG
*
2926780 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
2926845 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
2926910 TAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
2926975 AATG
196 AATG
2926979 TGTCGACACTAATATA
1 TGTCGACACTAATATA
2926995 TTGTAAAGTA
Statistics
Matches: 404, Mismatches: 10, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
199 320 0.79
200 84 0.21
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (199 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
AATG
Found at i:2927697 original size:184 final size:184
Alignment explanation
Indices: 2927388--2928058 Score: 1236
Period size: 184 Copynumber: 3.7 Consensus size: 184
2927378 CTTTCAACAT
** *
2927388 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
2927453 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
2927518 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
2927572 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
*
2927637 GGTCTACAACCTTTATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
2927702 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
2927756 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
2927821 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
2927886 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
2927940 ATTATAATGTAATAGATAA-TTTGTAATATAACCGGTATAAATATACTGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
*
2928004 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
2928059 CCATTTAAAA
Statistics
Matches: 471, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
183 96 0.20
184 375 0.80
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:2930647 original size:23 final size:23
Alignment explanation
Indices: 2930616--2930679 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
2930606 ATAGGTAAAC
*
2930616 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
2930639 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
2930662 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
2930680 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:2930686 original size:23 final size:23
Alignment explanation
Indices: 2930616--2930688 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
2930606 ATAGGTAAAC
* **
2930616 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
2930639 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
2930662 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
2930685 ATAT
1 ATAT
2930689 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:2931074 original size:23 final size:23
Alignment explanation
Indices: 2931043--2931105 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
2931033 ATAGGTAAAC
*
2931043 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
2931066 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
2931089 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
2931106 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:2931113 original size:23 final size:23
Alignment explanation
Indices: 2931043--2931115 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
2931033 ATAGGTAAAC
* * **
2931043 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
2931066 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
2931089 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
2931112 ATAT
1 ATAT
2931116 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:2931498 original size:430 final size:427
Alignment explanation
Indices: 2930518--2931535 Score: 1975
Period size: 430 Copynumber: 2.4 Consensus size: 427
2930508 AATTCGCAGT
2930518 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
2930582 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
2930647 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
2930712 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
2930777 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTA
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTA
2930842 AATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATG
326 AATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATG
2930907 AAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
2930944 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
2931009 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
2931074 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
*
2931139 AAAAGTGTCCATACTTTTTTTACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
2931204 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTA
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGG--TATA-TATTA
2931269 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
323 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
2931334 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
388 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
2931374 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
2931439 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
2931504 TAATAGGTATCGTTTATATAATGTAATAGGTA
131 TAATAGGTATCGTTTATATAATGTAATAGGTA
2931536 TCTATCTCGC
Statistics
Matches: 585, Mismatches: 3, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
426 40 0.07
427 269 0.46
429 4 0.01
430 272 0.46
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (427 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTA
AATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATG
AAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:2931536 original size:23 final size:23
Alignment explanation
Indices: 2931473--2931537 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
2931463 ATAGGTAAAC
* *
2931473 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
**
2931496 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCCCTT
2931519 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
2931538 TATCTCGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:2931762 original size:18 final size:18
Alignment explanation
Indices: 2931741--2931777 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2931731 GTAATTGGAG
2931741 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
2931759 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
2931777 T
1 T
2931778 ATATTTCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:2944620 original size:22 final size:21
Alignment explanation
Indices: 2944578--2944617 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2944568 GAGTTTATTT
*
2944578 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
2944599 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
2944618 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:2948585 original size:13 final size:13
Alignment explanation
Indices: 2948531--2948592 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
2948521 TATTTTAATT
2948531 ATATATTAATAAA
1 ATATATTAATAAA
* *
2948544 TTAATAATAA-AAA
1 AT-ATATTAATAAA
*
2948557 ATATCATATCATAAA
1 ATAT-AT-TAATAAA
*
2948572 ATTTATTAATAAA
1 ATATATTAATAAA
2948585 ATATATTA
1 ATATATTA
2948593 GAGTGATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
12 2 0.05
13 19 0.51
14 10 0.27
15 6 0.16
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATATTAATAAA
Found at i:2949104 original size:18 final size:18
Alignment explanation
Indices: 2949081--2949116 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2949071 GAATGTACAT
2949081 TAATTAGTAGAAATAGAG
1 TAATTAGTAGAAATAGAG
*
2949099 TAATTAGTTGAAATAGAG
1 TAATTAGTAGAAATAGAG
2949117 GGTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (18 bp):
TAATTAGTAGAAATAGAG
Found at i:2953888 original size:19 final size:19
Alignment explanation
Indices: 2953842--2953889 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
2953832 ACAGTAGATT
*
2953842 AAAATTATCTATGTATAAA
1 AAAATTATCAATGTATAAA
2953861 AAAGTATTATCAATGTATAAA
1 AAA--ATTATCAATGTATAAA
*
2953882 ATAATTAT
1 AAAATTAT
2953890 GTATTAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 8 0.32
21 17 0.68
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (19 bp):
AAAATTATCAATGTATAAA
Found at i:2957080 original size:35 final size:33
Alignment explanation
Indices: 2957040--2957124 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
2957030 GTATTTCAAT
2957040 TAATTTTGTT-TATTACCATTTAATATCATTTATTG
1 TAATTTTGTTATATTACCATTTAAT-TC--TTATTG
*
2957075 TAATTTGGTTATCATTTACCATTTAATTCTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATTCTTATTG
* *
2957110 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
2957125 TAAAATTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 3 0.07
38 12 0.28
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.56
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATTCTTATTG
Found at i:2967551 original size:31 final size:31
Alignment explanation
Indices: 2967515--2967574 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
2967505 AACTTAAAAG
* * *
2967515 AGTTTTGCAATATTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
2967546 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
2967575 CATACAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:2967631 original size:32 final size:32
Alignment explanation
Indices: 2967588--2968381 Score: 458
Period size: 32 Copynumber: 28.7 Consensus size: 32
2967578 ACAACTACAA
2967588 TAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967620 TAATTAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967652 -AACTACA--A--T--AATAAATCAATCC--A-
1 TAA-TAAATTATTTAAAATAAATCAATCCATAC
*
2967675 T-AT------TTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967700 TAATAAATTATTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967732 -AACTACA--A--T--AATAAATCAATCC--A-
1 TAA-TAAATTATTTAAAATAAATCAATCCATAC
*
2967755 T-AT------TTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
* *
2967780 AAATAAATTATTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2967812 TAATAAATTATTTAAAATAAATCAAT---T-C
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967840 --AT--A-T-TTTAAAATAAATCAATTCATA-
1 TAATAAATTATTTAAAATAAATCAATCCATAC
** *
2967865 TTTTAAAA---------TAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2967888 TAATAAATTATTTAAAATAAATCAAT-C---C
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967916 --AT--A-T-TTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2967942 TAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2967974 -AACTACA--A--T--AATAAATCAATCC--A-
1 TAA-TAAATTATTTAAAATAAATCAATCCATAC
2967997 T-AT------TTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
* *
2968022 AAATAAATTATTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968054 TAATAAATTATTTAAAATAAATCAAT-C---C
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2968082 --AT--A-T-TTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
* *
2968108 AAATAAATTATTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968140 TAATAAATTATTTAAAATAAATCAAT-C---C
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968168 --AT--A-T-TTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968194 TAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2968226 TAATAAATTATTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2968258 -AACTACA--A--T--AATAAATCAATCC--A-
1 TAA-TAAATTATTTAAAATAAATCAATCCATAC
2968281 T-AT------TTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968306 TAATAAATTATTTAAAATAAATCAAT-C---C
1 TAATAAATTATTTAAAATAAATCAATCCATAC
*
2968334 --AT--A-T-TTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAC
2968360 TAATAAATTATTTAAAATAAAT
1 TAATAAATTATTTAAAATAAAT
2968382 TATTTTAAAA
Statistics
Matches: 611, Mismatches: 28, Indels: 246
0.69 0.03 0.28
Matches are distributed among these distances:
20 4 0.01
22 147 0.24
23 17 0.03
24 13 0.02
25 3 0.00
26 72 0.12
27 1 0.00
28 17 0.03
29 2 0.00
30 8 0.01
31 16 0.03
32 311 0.51
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (32 bp):
TAATAAATTATTTAAAATAAATCAATCCATAC
Found at i:2967665 original size:26 final size:26
Alignment explanation
Indices: 2967635--2967756 Score: 92
Period size: 26 Copynumber: 4.6 Consensus size: 26
2967625 AATTATTTAA
2967635 AATAAATCAATCCATACAACTACAAT
1 AATAAATCAATCCATACAACTACAAT
* **
2967661 AATAAATCAATCCAT---ATTTTAA-
1 AATAAATCAATCCATACAACTACAAT
* *
2967683 AATAAATCAATTCATACTAA-TAAATTATTT
1 AATAAATCAATCCATAC-AACTACA--A--T
*
2967713 AAAATAAATCAATCTATACAACTACAAT
1 --AATAAATCAATCCATACAACTACAAT
2967741 AATAAATCAATCCATA
1 AATAAATCAATCCATA
2967757 TTTTAAAATA
Statistics
Matches: 74, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
22 14 0.19
23 4 0.05
25 2 0.03
26 31 0.42
27 1 0.01
28 1 0.01
30 1 0.01
31 2 0.03
32 18 0.24
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.30
Consensus pattern (26 bp):
AATAAATCAATCCATACAACTACAAT
Found at i:2967797 original size:14 final size:14
Alignment explanation
Indices: 2967780--2967833 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
2967770 CAATCTATAC
2967780 AAATAAATTATTTA
1 AAATAAATTATTTA
*
2967794 AAATAAATCAATCTATA
1 AAATAAAT-TAT-T-TA
*
2967811 CTAATAAATTATTTA
1 -AAATAAATTATTTA
2967826 AAATAAAT
1 AAATAAAT
2967834 CAATTCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 15 0.47
15 4 0.12
16 2 0.06
17 4 0.12
18 7 0.22
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAAATTATTTA
Found at i:2967805 original size:54 final size:54
Alignment explanation
Indices: 2967710--2968381 Score: 424
Period size: 54 Copynumber: 12.8 Consensus size: 54
2967700 TAATAAATTA
* *
2967710 TTTAAAATAAATCAATCTATACAACTACA--A--T--AATAAATCAATCCATAT
1 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
2967758 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAAT-C-TAT
1 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
** * * * * * *
2967810 ACT--AATAAAT-TATTTAAAATAAATCAATTCATATTTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATCT-ATACAAAT-AAAT--TA-TTTAAAATAAATCAATCCATAT
* *
2967866 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
* *
2967920 TTTAAAATAAATCAAT-TCATACTAATAAATTATTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCT-ATACAAATAAATTATTTAAAATAAATCAATCCAT---AT
** * * ** * * *
2967977 TACAATAATAAATCAATCCATATTTTA-AAATAAATCAATCCATACAAATAAAT---TA-
1 TTTAA-AATAAATCAAT-C-TA---TACAAATAAATTATTTAAAATAAATCAATCCATAT
*
2968032 TTTAAAATAAATCAAT-TCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCT-ATACAAATAAATTATTTAAAATAAATCAATCCATAT
*
2968086 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATTCATA-
1 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
* * * * * *
2968139 -CT--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA-
1 TTTAAAATAAATCAATCT-ATACAAATAAAT---TA-TTTAAAATAAATCAATCCATAT
* * * ** * * *
2968193 -CT--AATAAAT-TAT-T-TA-AAATAAATCAATCCATACT-AATAAAT---TA-
1 TTTAAAATAAATCAATCTATACAAATAAAT-TATTTAAAATAAATCAATCCATAT
* *
2968236 TTTAAAATAAATCAAT-TCATACAACTACA--A--T--AATAAATCAATCCATAT
1 TTTAAAATAAATCAATCT-ATACAAATAAATTATTTAAAATAAATCAATCCATAT
* *
2968284 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
*
2968338 TTTAAAATAAATCAAT-TCATACTAATAAATTATTTAAAATAAAT
1 TTTAAAATAAATCAATCT-ATACAAATAAATTATTTAAAATAAAT
2968382 TATTTTAAAA
Statistics
Matches: 494, Mismatches: 71, Indels: 112
0.73 0.10 0.17
Matches are distributed among these distances:
43 4 0.01
44 7 0.01
46 13 0.03
47 10 0.02
48 52 0.11
49 10 0.02
50 61 0.12
51 5 0.01
52 8 0.02
53 8 0.02
54 249 0.50
55 7 0.01
56 5 0.01
57 7 0.01
58 23 0.05
59 3 0.01
60 1 0.00
61 1 0.00
62 18 0.04
63 2 0.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (54 bp):
TTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCCATAT
Found at i:2967895 original size:22 final size:22
Alignment explanation
Indices: 2967822--2967886 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
2967812 TAATAAATTA
2967822 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATTCATAT
2967844 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATTCATAT
*
2967866 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATTCATA
2967887 CTAATAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAAAATAAATCAATTCATAT
Found at i:2967924 original size:22 final size:22
Alignment explanation
Indices: 2967898--2967940 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
2967888 TAATAAATTA
2967898 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
2967920 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
2967941 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:2967949 original size:22 final size:22
Alignment explanation
Indices: 2967900--2967948 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
2967890 ATAAATTATT
**
2967900 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
2967922 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
2967945 TAAA
1 TAAA
2967949 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:2968029 original size:22 final size:22
Alignment explanation
Indices: 2967956--2968029 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
2967946 AAATTATTTA
*
2967956 AAATAAATCAATCCATACAACTACA
1 AAATAAATCAATCCATACAA--A-T
***
2967981 ATAATAAATCAATCCATA-TTTT
1 A-AATAAATCAATCCATACAAAT
2968003 AAAATAAATCAATCCATACAAAT
1 -AAATAAATCAATCCATACAAAT
2968026 AAAT
1 AAAT
2968030 TATTTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
22 20 0.51
23 2 0.05
25 1 0.03
26 16 0.41
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAAATCAATCCATACAAAT
Found at i:2968176 original size:22 final size:22
Alignment explanation
Indices: 2968150--2968192 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2968140 TAATAAATTA
2968150 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
2968172 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
2968193 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:2968201 original size:22 final size:22
Alignment explanation
Indices: 2968152--2968200 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
2968142 ATAAATTATT
**
2968152 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
2968174 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
2968197 TAAA
1 TAAA
2968201 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:2968313 original size:22 final size:22
Alignment explanation
Indices: 2968238--2968312 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
2968228 ATAAATTATT
* *
2968238 TAAAATAAATCAATTCATACAA
1 TAAAATAAATCAATCCATATAA
**
2968260 CTACAATAATAAATCAATCCATATTT
1 -T--AA-AATAAATCAATCCATATAA
2968286 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
2968309 TAAA
1 TAAA
2968313 TTATTTAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
25 3 0.07
26 15 0.36
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:2968342 original size:22 final size:22
Alignment explanation
Indices: 2968316--2968416 Score: 85
Period size: 22 Copynumber: 4.5 Consensus size: 22
2968306 TAATAAATTA
2968316 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
2968338 TTTAAAATAAATCAATTCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
2968361 AATAAATTATTTAAAATAAATTAT
1 TTTAAAATAAAT-CAATCCA-TAT
2968385 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
2968407 TTTATAATAA
1 TTTAAAATAA
2968417 TTTATTTTAA
Statistics
Matches: 58, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
22 32 0.55
23 12 0.21
24 12 0.21
25 2 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:2968390 original size:15 final size:15
Alignment explanation
Indices: 2968361--2968493 Score: 160
Period size: 15 Copynumber: 8.5 Consensus size: 15
2968351 AATTCATACT
2968361 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
2968375 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
2968390 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
2968412 AATAATTTATTTTAA
1 AATAAATTATTTTAA
* *
2968427 AGTAAATTATTTTAT
1 AATAAATTATTTTAA
2968442 AATAAATTATTTTAA
1 AATAAATTATTTTAA
2968457 AATAAATTATTTTAA
1 AATAAATTATTTTAA
2968472 AATAAATTATTTTAA
1 AATAAATTATTTTAA
2968487 AATAAAT
1 AATAAAT
2968494 AACCTTATTA
Statistics
Matches: 103, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
14 9 0.09
15 77 0.75
17 1 0.01
18 2 0.02
19 3 0.03
20 1 0.01
22 10 0.10
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:2968403 original size:69 final size:67
Alignment explanation
Indices: 2968307--2968463 Score: 212
Period size: 69 Copynumber: 2.3 Consensus size: 67
2968297 AATCCATACT
2968307 AATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAA-TAAATTA
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAAT-AATCAATT-ATA--AAGTAAATTA
2968370 -TTTAA
62 TTTTAA
* ** *
2968375 AATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAATTTATTTTAAAGTAAATTATTTT
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATTATAAAGTAAATTATTTT
*
2968440 AT
66 AA
2968442 AATAAATTATTTTAAAATAAAT
1 AATAAATTATTTTAAAATAAAT
2968464 TATTTTAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
65 2 0.02
66 7 0.09
67 28 0.35
68 15 0.19
69 29 0.36
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.43
Consensus pattern (67 bp):
AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATTATAAAGTAAATTATTTT
AA
Found at i:2968420 original size:47 final size:49
Alignment explanation
Indices: 2968229--2968493 Score: 167
Period size: 47 Copynumber: 5.4 Consensus size: 49
2968219 TCCATACTAA
* ** *
2968229 TAAATTA-TTTAAAATAAATCAATTCATAC-AACTACAATAATAAATCAA-
1 TAAATTATTTTAAAATAAATCAATCCATACTAA-TA-AATAATTTATAAAG
** *
2968277 TCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA-
1 TAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATTT---ATAAAG
* * *
2968327 TCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTA-AAA-
1 TAAAT---TATTTTAAAATAAATCAATCCATACTAATAAATAATTTATAAAG
**
2968377 TAAATTATTTTAAAATAAATCAATCCATA-TTTTATAATAATTTATTTTAAAG
1 TAAATTATTTTAAAATAAATCAATCCATACTAATA-AATAATTTA---TAAAG
* * ** * * *
2968429 TAAATTATTTTATAATAAAT-TAT-TTTA-AAATAAATTATTT-TAAAA
1 TAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATTTATAAAG
2968474 TAAATTATTTTAAAATAAAT
1 TAAATTATTTTAAAATAAAT
2968494 AACCTTATTA
Statistics
Matches: 178, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
45 23 0.13
46 3 0.02
47 38 0.21
48 25 0.14
49 9 0.05
50 18 0.10
51 6 0.03
52 19 0.11
54 37 0.21
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.40
Consensus pattern (49 bp):
TAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATTTATAAAG
Found at i:2969383 original size:23 final size:22
Alignment explanation
Indices: 2969355--2969401 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
2969345 TATCTTTTTA
2969355 TATTTT-ATATATATTCTAAATTT
1 TATTTTCA-ATATATTC-AAATTT
*
2969378 TATTTTCAATATATTCATATTT
1 TATTTTCAATATATTCAAATTT
2969400 TA
1 TA
2969402 ATTATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 14 0.64
24 1 0.05
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTTTCAATATATTCAAATTT
Found at i:2975338 original size:20 final size:20
Alignment explanation
Indices: 2975315--2975401 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
2975305 GAATATGTAA
* *
2975315 ATCGCAATGCGATTATGACT
1 ATCGCAACGCGATTCTGACT
2975335 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
2975355 GTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* * *
2975375 GTCACAACGCGATGCTGACT
1 ATCGCAACGCGATTCTGACT
2975395 ATCGCAA
1 ATCGCAA
2975402 TGTGATTTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:2975599 original size:22 final size:22
Alignment explanation
Indices: 2975574--2975637 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
2975564 CACTCTCTAA
*
2975574 GACGACATCCGTCCCTATCTCC
1 GACGAAATCCGTCCCTATCTCC
** *
2975596 GACGAAATCAATCCCCATCTCC
1 GACGAAATCCGTCCCTATCTCC
2975618 GACGAAATCCGT--CTATCTCC
1 GACGAAATCCGTCCCTATCTCC
2975638 ATCTCTCAGA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
20 7 0.20
22 28 0.80
ACGTcount: A:0.25, C:0.41, G:0.12, T:0.22
Consensus pattern (22 bp):
GACGAAATCCGTCCCTATCTCC
Found at i:2976018 original size:19 final size:19
Alignment explanation
Indices: 2975994--2976038 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
2975984 AGAATCGCAA
2975994 TGCGATTTTAGTTTCACGT
1 TGCGATTTTAGTTTCACGT
**
2976013 TGCGATTTTAGTTTTGCGT
1 TGCGATTTTAGTTTCACGT
2976032 TGCGATT
1 TGCGATT
2976039 CTCGCGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.13, C:0.13, G:0.24, T:0.49
Consensus pattern (19 bp):
TGCGATTTTAGTTTCACGT
Found at i:2976088 original size:20 final size:20
Alignment explanation
Indices: 2976044--2976111 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
2976034 CGATTCTCGC
** *
2976044 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCATTTTCGT
*
2976064 ATTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
2976084 GTTGCGATTTTCACTTTT-GT
1 GTTGCGATAGTCA-TTTTCGT
2976104 GTTGCGAT
1 GTTGCGAT
2976112 TTTAAGTTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 36 0.90
21 4 0.10
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.43
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:2978047 original size:20 final size:20
Alignment explanation
Indices: 2978022--2978069 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
2978012 TAGTTTACTT
*
2978022 TCGCAATGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
2978042 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
2978062 TCGCAACG
1 TCGCAACG
2978070 AAAGAATCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:2978189 original size:20 final size:20
Alignment explanation
Indices: 2978112--2978200 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
2978102 GCGATTCTCT
**
2978112 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
**
2978132 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
2978152 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
2978172 CGTTGTGATAGT-ATTTTTCG
1 CGTTGCGATAGTCA-TTTTCG
2978192 CGTTGCGAT
1 CGTTGCGAT
2978201 TTTAAGTTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
19 1 0.02
20 63 0.98
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:2979789 original size:5 final size:5
Alignment explanation
Indices: 2979776--2979815 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
2979766 AACGGTCAAC
* *
2979776 GGTCT GGTCG GGTCG GGTCG GGTC- AGTCG GGTCG GGTCG G
1 GGTCG GGTCG GGTCG GGTCG GGTCG GGTCG GGTCG GGTCG G
2979816 ACCGGTCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
4 3 0.10
5 28 0.90
ACGTcount: A:0.03, C:0.20, G:0.55, T:0.23
Consensus pattern (5 bp):
GGTCG
Found at i:2979806 original size:14 final size:14
Alignment explanation
Indices: 2979787--2979813 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2979777 GTCTGGTCGG
2979787 GTCGGGTCGGGTCA
1 GTCGGGTCGGGTCA
2979801 GTCGGGTCGGGTC
1 GTCGGGTCGGGTC
2979814 GGACCGGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.22, G:0.52, T:0.22
Consensus pattern (14 bp):
GTCGGGTCGGGTCA
Found at i:2979897 original size:20 final size:21
Alignment explanation
Indices: 2979861--2979899 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2979851 TGAACCAGTC
*
2979861 AAATCGGTCAGAACCGGTTGA
1 AAATCGATCAGAACCGGTTGA
2979882 AAATCGATCA-AACCGGTT
1 AAATCGATCAGAACCGGTT
2979900 TCCAGCCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (21 bp):
AAATCGATCAGAACCGGTTGA
Found at i:2982385 original size:14 final size:14
Alignment explanation
Indices: 2982350--2982409 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
2982340 AAAGTGTTAT
*
2982350 TTGATTTATAAAAA
1 TTGATTTGTAAAAA
*
2982364 TTGATTTGTAAAAG
1 TTGATTTGTAAAAA
* *
2982378 TTGATTTGTTTAATA
1 TTGATTTG-TAAAAA
*
2982393 TTGATGTGTAAATAA
1 TTGATTTGTAAA-AA
2982408 TT
1 TT
2982410 CTTATTTGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
14 23 0.64
15 13 0.36
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (14 bp):
TTGATTTGTAAAAA
Found at i:2982549 original size:20 final size:20
Alignment explanation
Indices: 2982524--2982561 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2982514 CGCTAAACTC
*
2982524 AAAATCACAATGCGAAAGAT
1 AAAATCACAACGCGAAAGAT
*
2982544 AAAATCGCAACGCGAAAG
1 AAAATCACAACGCGAAAG
2982562 TCAATTCGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.18, G:0.18, T:0.11
Consensus pattern (20 bp):
AAAATCACAACGCGAAAGAT
Found at i:2982613 original size:20 final size:20
Alignment explanation
Indices: 2982555--2982812 Score: 262
Period size: 20 Copynumber: 13.2 Consensus size: 20
2982545 AAATCGCAAC
*
2982555 GCGAAAGTC-AATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* * *
2982574 GCGATAGTCTAATACCCGTT
1 GCGATAGTCAAATTCGCGTT
*
2982594 ACGATAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* *
2982614 GCGATACTCAAATTCGTGTT
1 GCGATAGTCAAATTCGCGTT
*
2982634 GCGATAGTCAAATTTGCGTT
1 GCGATAGTCAAATTCGCGTT
2982654 GCGATAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* *
2982674 GC-A-A-T---TTTCTCGTT
1 GCGATAGTCAAATTCGCGTT
*
2982688 GCGATAGTCAAA-TAGCCGTT
1 GCGATAGTCAAATTCG-CGTT
* * *
2982708 ACAATAATCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* *
2982728 GCGACAGTCAAATTCGTGTT
1 GCGATAGTCAAATTCGCGTT
*
2982748 GCGATAGACAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
* * *
2982768 GCGATACTCATATTCGTGTT
1 GCGATAGTCAAATTCGCGTT
*
2982788 GCGATAGTCAAATTCGCGAT
1 GCGATAGTCAAATTCGCGTT
2982808 GCGAT
1 GCGAT
2982813 TTTTGAGTTG
Statistics
Matches: 191, Mismatches: 39, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
14 9 0.05
15 1 0.01
16 1 0.01
17 2 0.01
18 1 0.01
19 10 0.05
20 165 0.86
21 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCGTT
Found at i:2982720 original size:94 final size:94
Alignment explanation
Indices: 2982590--2982769 Score: 254
Period size: 94 Copynumber: 1.9 Consensus size: 94
2982580 GTCTAATACC
* * * * * * *
2982590 CGTTACGATAGTCAAATTCGCGTTGCGATACTCAAATTCGTGTTGCGATAGTCAAATTTGCGTTG
1 CGTTACGATAGTCAAATGCGCGTTACAATAATCAAATTCGCGTTGCGACAGTCAAATTCGCGTTG
*
2982655 CGATAGTCAAATTCGCGTTGCAATTTTCT
66 CGATAGACAAATTCGCGTTGCAATTTTCT
* *
2982684 CGTTGCGATAGTCAAATAGC-CGTTACAATAATCAAATTCGCGTTGCGACAGTCAAATTCGTGTT
1 CGTTACGATAGTCAAAT-GCGCGTTACAATAATCAAATTCGCGTTGCGACAGTCAAATTCGCGTT
2982748 GCGATAGACAAATTCGCGTTGC
65 GCGATAGACAAATTCGCGTTGC
2982770 GATACTCATA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
94 74 0.99
95 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (94 bp):
CGTTACGATAGTCAAATGCGCGTTACAATAATCAAATTCGCGTTGCGACAGTCAAATTCGCGTTG
CGATAGACAAATTCGCGTTGCAATTTTCT
Found at i:2982770 original size:114 final size:114
Alignment explanation
Indices: 2982570--2982789 Score: 341
Period size: 114 Copynumber: 1.9 Consensus size: 114
2982560 AGTCAATTCG
* * * *
2982570 CGTTGCGATAGTCTAATACCCGTTACGATAGTCAAATTCGCGTTGCGATACTCAAATTCGTGTTG
1 CGTTGCGATAGTCAAATACCCGTTACAATAATCAAATTCGCGTTGCGACACTCAAATTCGTGTTG
* * *
2982635 CGATAGTCAAATTTGCGTTGCGATAGTCAAATTCGCGTTGCAATTTTCT
66 CGATAGACAAATTCGCGTTGCGATACTCAAATTCGCGTTGCAATTTTCT
* *
2982684 CGTTGCGATAGTCAAATAGCCGTTACAATAATCAAATTCGCGTTGCGACAGTCAAATTCGTGTTG
1 CGTTGCGATAGTCAAATACCCGTTACAATAATCAAATTCGCGTTGCGACACTCAAATTCGTGTTG
* *
2982749 CGATAGACAAATTCGCGTTGCGATACTCATATTCGTGTTGC
66 CGATAGACAAATTCGCGTTGCGATACTCAAATTCGCGTTGC
2982790 GATAGTCAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 95 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (114 bp):
CGTTGCGATAGTCAAATACCCGTTACAATAATCAAATTCGCGTTGCGACACTCAAATTCGTGTTG
CGATAGACAAATTCGCGTTGCGATACTCAAATTCGCGTTGCAATTTTCT
Found at i:2984265 original size:14 final size:14
Alignment explanation
Indices: 2984246--2984285 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
2984236 TTTTGATTAA
2984246 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
** *
2984260 TTGATTTGTTTAAT
1 TTGATTTGTAAAAG
2984274 TTGATTTGTAAA
1 TTGATTTGTAAA
2984286 TAAGAATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:2984278 original size:61 final size:66
Alignment explanation
Indices: 2984199--2984335 Score: 169
Period size: 66 Copynumber: 2.2 Consensus size: 66
2984189 ACATTGAAAT
2984199 TTGATTTG-TTACAATTGATGAGGAAATAAG-A-T-TTATTTT-TTGATTAATTGATTTGTAAAA
1 TTGATTTGTTTACAATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTAAAA
2984259 G
66 G
* ** * * *
2984260 TTGATTTGTTTA-ATTTGATTTGTAAATAAGAATTATTTTTTTGCTTGTTTAATTGATTTGTAAA
1 TTGATTTGTTTACAATTGATGAGGAAATAAGAATTATTATTTT-CTTGATTAATTGATTTGTAAA
2984324 AG
65 AG
2984326 TTGATTTGTT
1 TTGATTTGTT
2984336 GTTTCTAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
61 22 0.34
62 4 0.06
63 1 0.02
64 6 0.09
66 31 0.48
ACGTcount: A:0.30, C:0.01, G:0.17, T:0.52
Consensus pattern (66 bp):
TTGATTTGTTTACAATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTAAAA
G
Found at i:2985420 original size:25 final size:25
Alignment explanation
Indices: 2985386--2985435 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
2985376 TTATTTTAAA
*
2985386 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
*
2985411 CAAATAATGTACTCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
2985436 TAATTGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:2985567 original size:20 final size:20
Alignment explanation
Indices: 2985544--2985605 Score: 97
Period size: 20 Copynumber: 3.1 Consensus size: 20
2985534 AATAAGCATT
2985544 GCGATAGTCAAATTCGCAAC
1 GCGATAGTCAAATTCGCAAC
* *
2985564 GCGAAAGTCAAATTCGCTAC
1 GCGATAGTCAAATTCGCAAC
*
2985584 GCTATAGTCAAATTCGCAAC
1 GCGATAGTCAAATTCGCAAC
2985604 GC
1 GC
2985606 TTATTTCGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCAAC
Found at i:2985957 original size:12 final size:12
Alignment explanation
Indices: 2985922--2985950 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
2985912 AAGCCGGTTG
2985922 TGATTGCGATTT
1 TGATTGCGATTT
2985934 TGATTGCGATTT
1 TGATTGCGATTT
2985946 TGATT
1 TGATT
2985951 TTGATTTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.24, T:0.52
Consensus pattern (12 bp):
TGATTGCGATTT
Found at i:2989075 original size:24 final size:24
Alignment explanation
Indices: 2989030--2989079 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
2989020 GGTTGGTTGG
*
2989030 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATATTTAAACTTTATT
*
2989054 TTTAATGGTATATTT-AAGTTTATT
1 TTTAATGG-ATATTTAAACTTTATT
2989078 TT
1 TT
2989080 GATTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (24 bp):
TTTAATGGATATTTAAACTTTATT
Found at i:2989580 original size:16 final size:16
Alignment explanation
Indices: 2989556--2989588 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2989546 CACGTGAGGA
2989556 TTATCTTCTTTTTATT
1 TTATCTTCTTTTTATT
*
2989572 TTATTTTCTTTTTATT
1 TTATCTTCTTTTTATT
2989588 T
1 T
2989589 ACTATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATCTTCTTTTTATT
Found at i:2992275 original size:15 final size:15
Alignment explanation
Indices: 2992251--2992293 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
2992241 TGAGTGTTTG
2992251 TTTG-TTTATTTTTA
1 TTTGTTTTATTTTTA
2992265 TTTGTTTTATTTTT-
1 TTTGTTTTATTTTTA
* *
2992279 TTAGTTTTAATTTTA
1 TTTGTTTTATTTTTA
2992294 ATATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (15 bp):
TTTGTTTTATTTTTA
Found at i:2994660 original size:24 final size:24
Alignment explanation
Indices: 2994615--2994664 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
2994605 TGGTGGTTGG
*
2994615 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATATTTAAACTTTATT
*
2994639 TTTAATGGTATATTT-AAGTTTATT
1 TTTAATGG-ATATTTAAACTTTATT
2994663 TT
1 TT
2994665 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (24 bp):
TTTAATGGATATTTAAACTTTATT
Found at i:2996352 original size:20 final size:20
Alignment explanation
Indices: 2996306--2996376 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
2996296 AAATTCAGTG
* * *
2996306 TTGCGACAGTCAGAATCGCG
1 TTGCGATAGTCATAATCGCA
2996326 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCATAATCGCA
* *
2996346 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CATAATCGCA
2996366 TTGCGATAGTC
1 TTGCGATAGTC
2996377 GGAAAATCGC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCATAATCGCA
Found at i:3005946 original size:107 final size:108
Alignment explanation
Indices: 3005738--3006060 Score: 470
Period size: 107 Copynumber: 3.0 Consensus size: 108
3005728 TATTGAACGA
* * * * * * * *
3005738 TTACTTACAACTATACAGTCGCTTCAGTTCTCATAAGGCTATGAGTCTCAACTATGATTTTATTT
1 TTACTTACAACTATATAGTCCCTTAAGTTTTCATAGGGCTAAGAATCTCAACAATGATTTTATTT
* *
3005803 ACTCTGTTTT-TGTTTCTTAGGACTTTAGGCTATTCTGTGCCAT
66 ACTCTGTTTTAT-TTTCTTAGGACTCTAGGCTGTTCTGTGCCAT
* * *
3005846 TTACTTACAACTATATAGCCCCTTAAGTTTTCATAGGGTTAAGAATGTCAACAATGA-TTTATTT
1 TTACTTACAACTATATAGTCCCTTAAGTTTTCATAGGGCTAAGAATCTCAACAATGATTTTATTT
*
3005910 ACTCTGTTTTATTTTCTTAGGACTCTCGGCTGTTCTGTGCCAT
66 ACTCTGTTTTATTTTCTTAGGACTCTAGGCTGTTCTGTGCCAT
*
3005953 TTACTTACAACTATATAGTCCCTTAAGTTTTCATAGTGCTAAGAATCTCAACAATGATTTTATTT
1 TTACTTACAACTATATAGTCCCTTAAGTTTTCATAGGGCTAAGAATCTCAACAATGATTTTATTT
* *
3006018 ACTCTGTTTTATTTTCTTAGGCCCCTAGGCTGTTCTGTGCCAT
66 ACTCTGTTTTATTTTCTTAGGACTCTAGGCTGTTCTGTGCCAT
3006061 AAGTGTCTCT
Statistics
Matches: 192, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
107 98 0.51
108 94 0.49
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.43
Consensus pattern (108 bp):
TTACTTACAACTATATAGTCCCTTAAGTTTTCATAGGGCTAAGAATCTCAACAATGATTTTATTT
ACTCTGTTTTATTTTCTTAGGACTCTAGGCTGTTCTGTGCCAT
Found at i:3007741 original size:35 final size:35
Alignment explanation
Indices: 3007695--3007764 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
3007685 CTGAGTTATA
3007695 CTTAACTGTGAACACGCATATGCATCCCACTGTTT
1 CTTAACTGTGAACACGCATATGCATCCCACTGTTT
3007730 CTTAACTGTGAACACGCATATGCATCCCACTGTTT
1 CTTAACTGTGAACACGCATATGCATCCCACTGTTT
3007765 TCTTCCCTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (35 bp):
CTTAACTGTGAACACGCATATGCATCCCACTGTTT
Found at i:3011419 original size:43 final size:43
Alignment explanation
Indices: 3011369--3011456 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
3011359 TTGGGTCTAA
3011369 AATTCAGCTCTTTAAATCTGATAATGGCAGTGAATTTTTTGCT
1 AATTCAGCTCTTTAAATCTGATAATGGCAGTGAATTTTTTGCT
*
3011412 AATTCAGCTCTTTAAATCTGATAATGGTAGTGAATTTTTTGCT
1 AATTCAGCTCTTTAAATCTGATAATGGCAGTGAATTTTTTGCT
3011455 AA
1 AA
3011457 GTCTTTGGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (43 bp):
AATTCAGCTCTTTAAATCTGATAATGGCAGTGAATTTTTTGCT
Found at i:3014171 original size:3 final size:3
Alignment explanation
Indices: 3014165--3014297 Score: 212
Period size: 3 Copynumber: 44.0 Consensus size: 3
3014155 TTCATTTAAA
** * * *
3014165 ATT ATT ATT ATT AAA ATT ATT ATT ATT AGT ATT ATT ATT AGT ATT AGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
3014213 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
3014261 ATT ATT ATT ATT ATT ATT ATT ATAT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
3014298 TAATAAATAA
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
3 116 0.97
4 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:3016475 original size:24 final size:25
Alignment explanation
Indices: 3016448--3016498 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
3016438 AATTTATAAT
3016448 TTTTTTATA-TATATATACATATTA
1 TTTTTTATAGTATATATACATATTA
* *
3016472 -TTTTTATAGTATTTATATATATTA
1 TTTTTTATAGTATATATACATATTA
3016496 TTT
1 TTT
3016499 ATATTGCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.35
24 13 0.57
25 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTTTTATAGTATATATACATATTA
Found at i:3021155 original size:13 final size:14
Alignment explanation
Indices: 3021133--3021166 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
3021123 CTCATCCAGC
3021133 AAAG-AAAGAAGAA
1 AAAGAAAAGAAGAA
3021146 AAA-AAAAGAAGAA
1 AAAGAAAAGAAGAA
3021159 AAAGAAAA
1 AAAGAAAA
3021167 AAATTGAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:3023570 original size:81 final size:81
Alignment explanation
Indices: 3023435--3023890 Score: 707
Period size: 81 Copynumber: 5.5 Consensus size: 81
3023425 CAATATACTT
*
3023435 ATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
*
3023500 TGAAAGGAATGTGTTC
66 TGAAAGGAATGTGCTC
*
3023516 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGCATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
* *
3023581 TGAAAAGAATGTGTTC
66 TGAAAGGAATGTGCTC
3023597 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
3023662 TGAAAGGAATGTG-TC
66 TGAAAGGAATGTGCTC
* *
3023677 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAAT
1 -ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAAT
3023742 TTGAAAGATGAATGTGCTC
65 TTGAAAG--GAATGTGCTC
* *
3023761 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TT--T-TG---TA-A-AACCAAC
3023826 CATTGAATTTGAAAGGAATGTGCTC
57 CATTGAATTTGAAAGGAATGTGCTC
*
3023851 ATAGCATCTTTTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
3023891 ATTTGATATG
Statistics
Matches: 352, Mismatches: 10, Indels: 17
0.93 0.03 0.04
Matches are distributed among these distances:
80 2 0.01
81 223 0.63
83 48 0.14
84 4 0.01
86 1 0.00
87 1 0.00
90 50 0.14
91 1 0.00
92 22 0.06
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (81 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTTGTAAAACCAACCATTGAATT
TGAAAGGAATGTGCTC
Found at i:3026574 original size:22 final size:23
Alignment explanation
Indices: 3026519--3026574 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
3026509 ATCTACACTC
*
3026519 TTCAAAGATGATAGATTCTTTTT
1 TTCAAAGATGATAGATTCTTCTT
* *
3026542 TTTAAATATGATAGATTC-TCTT
1 TTCAAAGATGATAGATTCTTCTT
3026564 TTCAAAGATGA
1 TTCAAAGATGA
3026575 AAGCTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (23 bp):
TTCAAAGATGATAGATTCTTCTT
Found at i:3027435 original size:77 final size:76
Alignment explanation
Indices: 3027249--3027965 Score: 1303
Period size: 77 Copynumber: 9.4 Consensus size: 76
3027239 ACTATTTCCC
*
3027249 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAGAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027314 AAGCCTTCGGG
66 AAGCCTTCGGG
*
3027325 TCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
*
3027390 AAAACCTTCGGG
65 AAAGCCTTCGGG
3027402 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
*
3027467 AAAACCTTCGGG
65 AAAGCCTTCGGG
*
3027479 TCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027543 AAGCCTTCGGG
66 AAGCCTTCGGG
3027554 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
*
3027619 AAAACCTTCGGG
65 AAAGCCTTCGGG
*
3027631 TCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027696 AAGCCTTCGGG
66 AAGCCTTCGGG
3027707 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
*
3027772 AAAACCTTCGGG
65 AAAGCCTTCGGG
*
3027784 TCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATG-TTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027848 AAGCCTTCGGG
66 AAGCCTTCGGG
3027859 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027924 AAGCCTTCGGG
66 AAGCCTTCGGG
3027935 TCATCTGTAAGTCCTTCAGTGCATGATGTTT
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTT
3027966 TCAACGTTTC
Statistics
Matches: 621, Mismatches: 15, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
75 129 0.21
76 213 0.34
77 279 0.45
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (76 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAGCCTTCGGG
Found at i:3027533 original size:153 final size:153
Alignment explanation
Indices: 3027249--3027965 Score: 1334
Period size: 153 Copynumber: 4.7 Consensus size: 153
3027239 ACTATTTCCC
*
3027249 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAGAAGCCTTCGGGAGCTTTTTGATGTTTTC-
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
* * *
3027313 AAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
66 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
*
3027378 TTGATGTTTTCAAAAACCTTCGGG
131 TTGATGTTTTC-AAAGCCTTCGGG
3027402 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027467 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGC-TT
66 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
3027531 TTGATGTTTTCAAAGCCTTCGGG
131 TTGATGTTTTCAAAGCCTTCGGG
3027554 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027619 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
66 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
3027684 TTGATGTTTTCAAAGCCTTCGGG
131 TTGATGTTTTCAAAGCCTTCGGG
3027707 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027772 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
66 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
3027837 TTGATG-TTTCAAAGCCTTCGGG
131 TTGATGTTTTCAAAGCCTTCGGG
3027859 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
* *
3027923 AAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTT
66 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTT
3027966 TCAACGTTTC
Statistics
Matches: 555, Mismatches: 7, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
151 41 0.07
152 218 0.39
153 237 0.43
154 59 0.11
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (153 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
TTGATGTTTTCAAAGCCTTCGGG
Found at i:3027800 original size:305 final size:305
Alignment explanation
Indices: 3027249--3027965 Score: 1357
Period size: 305 Copynumber: 2.4 Consensus size: 305
3027239 ACTATTTCCC
*
3027249 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAGAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
3027314 AAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
66 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
3027379 TGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCT
131 TGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCT
3027444 TCGGGAGCTTTTTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTT
196 TCGGGAGCTTTTTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTT
3027509 TCCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCAAAGCCTTCGGG
261 TCCAAAAAGCCTTCGGGAGCTTTTTGATG-TTTCAAAGCCTTCGGG
3027554 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
* *
3027619 AAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
65 AAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
*
3027684 TTGATGTTTTC-AAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCC
130 TTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCC
3027748 TTCGGGAGCTTTTTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGT
195 TTCGGGAGCTTTTTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGT
3027813 TTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTCAAAGCCTTCGGG
260 TTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTCAAAGCCTTCGGG
3027859 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
3027924 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTT
66 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTT
3027966 TCAACGTTTC
Statistics
Matches: 403, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
304 41 0.10
305 281 0.70
306 81 0.20
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (305 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
TGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCT
TCGGGAGCTTTTTGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTCCAGTGCATGATGTT
TCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTCAAAGCCTTCGGG
Found at i:3028103 original size:3 final size:3
Alignment explanation
Indices: 3028097--3028245 Score: 226
Period size: 3 Copynumber: 49.0 Consensus size: 3
3028087 TTCATTTAAA
** * * *
3028097 ATT ATT ATT ATT AAA ATT ATT ATT ATT AGT ATT ATT ATT AGT ATT AGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
3028145 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
3028193 ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT AAT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
3028240 ATT ATT
1 ATT ATT
3028246 TAATAAATAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
3 126 0.95
4 6 0.05
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:3032323 original size:15 final size:15
Alignment explanation
Indices: 3032303--3032332 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3032293 CCCACTGTTC
3032303 GTTAATGAATTATTG
1 GTTAATGAATTATTG
3032318 GTTAATGAATTATTG
1 GTTAATGAATTATTG
3032333 CATATAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (15 bp):
GTTAATGAATTATTG
Found at i:3033375 original size:3 final size:3
Alignment explanation
Indices: 3033367--3033413 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
3033357 ACAAACAGAA
3033367 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
3033414 ACAATTGCTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:3034264 original size:22 final size:22
Alignment explanation
Indices: 3034239--3034286 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
3034229 AAACAACCAA
*
3034239 AAAACGTTCTA-AAAGGCAAAAG
1 AAAACGTTCTATAAAGAC-AAAG
*
3034261 AAAATGTTCTATAAAGACAAAG
1 AAAACGTTCTATAAAGACAAAG
3034283 AAAA
1 AAAA
3034287 ACATGTCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.58, C:0.10, G:0.15, T:0.17
Consensus pattern (22 bp):
AAAACGTTCTATAAAGACAAAG
Found at i:3034287 original size:23 final size:21
Alignment explanation
Indices: 3034237--3034288 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
3034227 CCAAACAACC
*
3034237 AAAAAACGTTCTAAAAGGCAA
1 AAAAAACGTTCTAAAAGACAA
*
3034258 AAGAAAATGTTCTATAAAGACAA
1 AA-AAAACGTTCTA-AAAGACAA
3034281 AGAAAAAC
1 A-AAAAAC
3034289 ATGTCATGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 2 0.08
22 10 0.40
23 12 0.48
24 1 0.04
ACGTcount: A:0.60, C:0.12, G:0.13, T:0.15
Consensus pattern (21 bp):
AAAAAACGTTCTAAAAGACAA
Found at i:3034713 original size:34 final size:29
Alignment explanation
Indices: 3034634--3034722 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 29
3034624 TTGTCTTAAA
3034634 AAAATAAATCTTAACTCAT-ATATAATTT
1 AAAATAAATCTTAACTCATAATATAATTT
* * *
3034662 AAAATACATGTACAACTCATAAATTATATATTAT
1 AAAATAAATCT-TAACTCAT-AA-TATA-ATT-T
3034696 ATAAATAAATCTTAACTCAT-ATATAAT
1 A-AAATAAATCTTAACTCATAATATAAT
3034723 CATTAATGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
28 9 0.19
29 7 0.15
30 2 0.04
31 5 0.10
32 5 0.10
33 3 0.06
34 9 0.19
35 8 0.17
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.37
Consensus pattern (29 bp):
AAAATAAATCTTAACTCATAATATAATTT
Found at i:3044849 original size:23 final size:23
Alignment explanation
Indices: 3044819--3044863 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
3044809 AAAAAAATCG
3044819 GGTATCCGGGTACCCAACATACA
1 GGTATCCGGGTACCCAACATACA
* *
3044842 GGTATCCGGTTACCCGACATAC
1 GGTATCCGGGTACCCAACATAC
3044864 GGATACCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (23 bp):
GGTATCCGGGTACCCAACATACA
Found at i:3049934 original size:149 final size:150
Alignment explanation
Indices: 3049664--3050107 Score: 652
Period size: 149 Copynumber: 3.0 Consensus size: 150
3049654 CGAGGGTCTA
* * ** * * * * *
3049664 CGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTT-TGAGGCACATACTT
1 CGCGGTCCTTCGAGATATACATATATTCTGTGGAACATGTATGAAGTCTTGTAAGACACATACTT
* *
3049728 GGTCCTTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATATG
66 GATCCTTAGTAT-TGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATATG
3049793 GCACTAC-GTGCAATTCTACG
130 GCACTACGGTGCAATTCTACG
*
3049813 CGCGGT-CTTCGAGATATACATATATTCTGTGGAACATGTAAGAAGTCTTGTAAGACACATACTT
1 CGCGGTCCTTCGAGATATACATATATTCTGTGGAACATGTATGAAGTCTTGTAAGACACATACTT
*
3049877 GATCCTTAGTATGTGTATATAATTATTAAGGAATGATATGTGGTCCTTATGGACATTATTATATG
66 GATCCTTAGTAT-TGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATATG
3049942 GCACTACGGTGCAATTCTA--
130 GCACTACGGTGCAATTCTACG
* * * *
3049961 TGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACATACTT
1 CGCGGTCCTTCGAGATATACATATATTCTGTGGAACATGTATGAAGTCTTGTAAGACACATACTT
3050026 GATCCTTA-TA-TGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTA-TATATGG
66 GATCCTTAGTATTGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATATGG
*
3050088 CACTACGGTGTAATTCTACG
131 CACTACGGTGCAATTCTACG
3050108 TGCACTTCGG
Statistics
Matches: 269, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
145 24 0.09
146 44 0.16
148 42 0.16
149 148 0.55
150 11 0.04
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (150 bp):
CGCGGTCCTTCGAGATATACATATATTCTGTGGAACATGTATGAAGTCTTGTAAGACACATACTT
GATCCTTAGTATTGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATATGG
CACTACGGTGCAATTCTACG
Found at i:3053503 original size:27 final size:27
Alignment explanation
Indices: 3053443--3053503 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 27
3053433 ACATGCAGTG
3053443 CATCGATGCATTAATTTAAAAAGAAAA
1 CATCGATGCATTAATTTAAAAAGAAAA
3053470 CATTCGATGCATTAATTTAAAAAGAAAA
1 CA-TCGATGCATTAATTTAAAAAGAAAA
3053498 CATCGA
1 CATCGA
3053504 ATAGGATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 6 0.18
28 27 0.82
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.26
Consensus pattern (27 bp):
CATCGATGCATTAATTTAAAAAGAAAA
Found at i:3053555 original size:65 final size:65
Alignment explanation
Indices: 3053486--3053610 Score: 182
Period size: 64 Copynumber: 1.9 Consensus size: 65
3053476 ATGCATTAAT
*
3053486 TTAAAAAGAAAACATCGAATAGGATTTATGCATTGATGCATAAG-G-AGTGCATCGATGCATCCC
1 TTAAAAA-AAAACATCGAATAGGATTTATGCATCGATGCAT-AGTGTAGTGCATCGATGCATCCC
3053549 CA
64 CA
* * *
3053551 TTAAATACAAACATCGAATAGGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCAT
1 TTAAAAAAAAACATCGAATAGGATTTATGCATCGATGCATAGTGTAGTGCATCGATGCAT
3053611 ACCTTTATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
63 1 0.02
64 32 0.59
65 21 0.39
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (65 bp):
TTAAAAAAAAACATCGAATAGGATTTATGCATCGATGCATAGTGTAGTGCATCGATGCATCCCCA
Found at i:3055208 original size:147 final size:147
Alignment explanation
Indices: 3054940--3055385 Score: 686
Period size: 147 Copynumber: 3.0 Consensus size: 147
3054930 GAGTCGAGGG
* * * * * * * * *
3054940 TCTACGCGGTCTTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTT-TGAGGCACAT
1 TCTACGCGGTCCTTCGGGATATATATATATT-TGTGGAACATGTGTGAAGTCTTGTAAGACACAT
* *
3055004 ACTTGGTCCTTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
65 ACTTGATCCTTAG-ATATGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
3055069 TATGGCACTACGGTGCAAT
129 TATGGCACTACGGTGCAAT
3055088 TCTACGCGGTCCTTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATT-TGTGGAACATGTGTGAAGTCTTGTAAGACACAT
3055153 ACTTGATCCTTAG-TATGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
65 ACTTGATCCTTAGATATGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
3055217 ATGGCACTACGGTGCAAT
130 ATGGCACTACGGTGCAAT
*
3055235 TCTACGCGGT-CGTCGGGATATATATATA-TTGTGGAACATGTGTG-AGTCTTGTAAGACACATA
1 TCTACGCGGTCCTTCGGGATATATATATATTTGTGGAACATGTGTGAAGTCTTGTAAGACACATA
*
3055297 CTTGATCCTTAGTATATGTATATAATTCTTAAAGAATGATATGTGGTCCTTATGGACATTATTAT
66 CTTGATCCTTAG-ATATGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
*
3055362 ATGGCACTACGGTGTAAT
130 ATGGCACTACGGTGCAAT
*
3055380 TGTACG
1 TCTACG
3055386 TGCACTTCGG
Statistics
Matches: 279, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
143 30 0.11
144 15 0.05
145 73 0.26
146 17 0.06
147 78 0.28
148 46 0.16
149 20 0.07
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (147 bp):
TCTACGCGGTCCTTCGGGATATATATATATTTGTGGAACATGTGTGAAGTCTTGTAAGACACATA
CTTGATCCTTAGATATGTATATAATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTATA
TGGCACTACGGTGCAAT
Found at i:3055654 original size:31 final size:31
Alignment explanation
Indices: 3055583--3055656 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
3055573 TCATGTGATA
* *
3055583 AATAATTTGATGATAATGATAGAGATAATAAT
1 AATAATAT-ATGATAATGATAGAGAAAATAAT
*
3055615 AATAATATATGATAATGCTA-AGAAAATAGAT
1 AATAATATATGATAATGATAGAGAAAATA-AT
* *
3055646 GATGATATATG
1 AATAATATATG
3055657 TATATGAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 7 0.19
31 22 0.61
32 7 0.19
ACGTcount: A:0.50, C:0.01, G:0.16, T:0.32
Consensus pattern (31 bp):
AATAATATATGATAATGATAGAGAAAATAAT
Found at i:3057935 original size:50 final size:50
Alignment explanation
Indices: 3057881--3057979 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
3057871 CAGATATCCA
*
3057881 TGTATAGT-GCGAATCAGGGGGCGCGCTATACCCACGTGACGCCAAATCAC
1 TGTATA-TCGCGAAGCAGGGGGCGCGCTATACCCACGTGACGCCAAATCAC
** * * *
3057931 TGTATATCGCGGGGCAGGGGTCGCGCTATACTCACGTGGCGCCAAATCA
1 TGTATATCGCGAAGCAGGGGGCGCGCTATACCCACGTGACGCCAAATCA
3057980 GCATATAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.02
50 41 0.98
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.19
Consensus pattern (50 bp):
TGTATATCGCGAAGCAGGGGGCGCGCTATACCCACGTGACGCCAAATCAC
Found at i:3057998 original size:50 final size:50
Alignment explanation
Indices: 3057895--3058003 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
3057885 TAGTGCGAAT
* *
3057895 CAGGGGGCGCGCTATACCCACGTGACGCCAAATCACTGTATATCGCGGGG
1 CAGGGGGCGCGCTATACCCACGTGACGCCAAATCACTATATAACGCGGGG
* * * * *
3057945 CAGGGGTCGCGCTATACTCACGTGGCGCCAAATCAGC-ATATAACGTGGTG
1 CAGGGGGCGCGCTATACCCACGTGACGCCAAATCA-CTATATAACGCGGGG
3057995 CAGGGGGCG
1 CAGGGGGCG
3058004 TGATTTCCTG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
50 49 0.98
51 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.34, T:0.17
Consensus pattern (50 bp):
CAGGGGGCGCGCTATACCCACGTGACGCCAAATCACTATATAACGCGGGG
Found at i:3059444 original size:31 final size:31
Alignment explanation
Indices: 3059406--3059479 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
3059396 TACACATTTC
*
3059406 TTTAAATTATATTATTTTTCTAAAAT-AAATA
1 TTTAAATTATATT-TTTTTATAAAATCAAATA
* *
3059437 TTTAAATTCT-TTTTTTTATCAAATCAAATA
1 TTTAAATTATATTTTTTTATAAAATCAAATA
3059467 TTTAAATTCATAT
1 TTTAAATT-ATAT
3059480 GGTTAATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 10 0.28
30 15 0.42
31 10 0.28
32 1 0.03
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.53
Consensus pattern (31 bp):
TTTAAATTATATTTTTTTATAAAATCAAATA
Found at i:3060818 original size:45 final size:46
Alignment explanation
Indices: 3060751--3060841 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 46
3060741 TTTTCATTAC
*
3060751 TCTATTTTTTTAAAAAAAAACTATATTTCTGTCACTTAACTACTCG
1 TCTATTTTTTAAAAAAAAAACTATATTTCTGTCACTTAACTACTCG
3060797 TCTA-TTTTTAAAAAAAAAACTATATTTCTGTCACTTAACTACTCG
1 TCTATTTTTTAAAAAAAAAACTATATTTCTGTCACTTAACTACTCG
3060842 AGATGGATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 40 0.91
46 4 0.09
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (46 bp):
TCTATTTTTTAAAAAAAAAACTATATTTCTGTCACTTAACTACTCG
Found at i:3072084 original size:2 final size:2
Alignment explanation
Indices: 3072077--3072107 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3072067 AATGAAGTAA
3072077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3072108 AGCAAGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3072405 original size:26 final size:24
Alignment explanation
Indices: 3072376--3072488 Score: 65
Period size: 25 Copynumber: 4.5 Consensus size: 24
3072366 TATGACTAAG
3072376 ATAATAATAAAATAATAATGAAAGTA
1 ATAATAATAAAATAATAA-GAAA-TA
*
3072402 ATAAT-TTAAATATATATAA-AAA-A
1 ATAATAATAAA-ATA-ATAAGAAATA
* *
3072425 GTAATAATAAAATAATATTGAAAATAA
1 ATAATAATAAAATAATA-AG-AAAT-A
*
3072452 ATAATGATCAAAATAA-AAGAAATTA
1 ATAATAAT-AAAATAATAAGAAA-TA
*
3072477 A-AATTATAAAAT
1 ATAATAATAAAAT
3072489 TAAAATGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
22 3 0.04
23 13 0.19
24 9 0.13
25 15 0.22
26 10 0.14
27 12 0.17
28 7 0.10
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.29
Consensus pattern (24 bp):
ATAATAATAAAATAATAAGAAATA
Found at i:3073710 original size:3 final size:3
Alignment explanation
Indices: 3073702--3073732 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
3073692 TATAATTATT
3073702 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
3073733 TTTAATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:3073982 original size:45 final size:45
Alignment explanation
Indices: 3073916--3074370 Score: 732
Period size: 45 Copynumber: 10.1 Consensus size: 45
3073906 GAGGTCTTAG
* * * *
3073916 CATCTTGCACT-ATAGGTCTTACAGATGACCCGAAGACTTTGAAAA
1 CATCATGCACTGA-AGGGCTTACAGATGACCCGGAGGCTTTGAAAA
*
3073961 CATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
*
3074006 CATCATGCACTGAAGGGCTTACAAATGACCCGGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
* *
3074051 TATCATGCACTGAAGGGCTTACAGATGACCCGGAGACTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
** *
3074096 CATCATGCGTTGAAGGGCTTACAGATGACCCGGAAGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
*
3074141 CATCATGCACTGAAGGGCTTATAGATGACCCGGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
*
3074186 CATCATGCACTAAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
*
3074231 CATCATGCACTGAAGGGCTTACAGATGACCCAGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
* *
3074276 CATCATGCACTGAGGGGCTTACAGATGACTCGGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
* *
3074321 CATCATGCATTGAAGGGCTTACAGATGACTCGGAGGCTTTGAAAA
1 CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
3074366 CATCA
1 CATCA
3074371 AAAAGCTCCC
Statistics
Matches: 383, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
45 382 1.00
46 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (45 bp):
CATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAA
Found at i:3074439 original size:76 final size:76
Alignment explanation
Indices: 3074313--3074514 Score: 296
Period size: 76 Copynumber: 2.7 Consensus size: 76
3074303 ACTCGGAGGC
* * * * ** * * *
3074313 TTTGAAAACATCATGCATTGAAGGGCTTACAGATGACTCGGAGGCTTTGAAAACATCAAAAAGCT
1 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCT
3074378 CCCAAAGGCTT
66 CCCAAAGGCTT
3074389 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCT
1 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCT
* *
3074454 CCCGAATGCTT
66 CCCAAAGGCTT
*
3074465 TTTGAAAACATTCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGA
1 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGA
3074515 GAATATCATG
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 114 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (76 bp):
TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCT
CCCAAAGGCTT
Found at i:3074601 original size:119 final size:121
Alignment explanation
Indices: 3074378--3074686 Score: 462
Period size: 119 Copynumber: 2.6 Consensus size: 121
3074368 TCAAAAAGCT
* * * ** *
3074378 CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAAC
1 CCCAAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
*
3074443 ATCAAAAAGCTCCCGAATGCTTTTTGAAAACATTCTGCACTGTAGGTCTTATGGATGA
64 ATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATTCTGCACTGTAGGTCTTATGGATGA
* * *
3074501 CCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAGATGA-CCGAAGGCTTTGAAAACAT
1 CCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
*
3074565 -AAAAAGCTCTCGAAGGCTTTTTGAAAACA-TCATGCACTGTAGGTCTTATGGATGA
66 CAAAAAGCTCCCGAAGGCTTTTTGAAAACATTC-TGCACTGTAGGTCTTATGGATGA
*
3074620 CCCAAAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
1 CCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
3074685 CA
66 CA
3074687 TGCACTGAAG
Statistics
Matches: 168, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
118 2 0.01
119 91 0.54
120 37 0.22
121 31 0.18
123 7 0.04
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (121 bp):
CCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
CAAAAAGCTCCCGAAGGCTTTTTGAAAACATTCTGCACTGTAGGTCTTATGGATGA
Found at i:3074643 original size:45 final size:45
Alignment explanation
Indices: 3074584--3074867 Score: 460
Period size: 45 Copynumber: 6.3 Consensus size: 45
3074574 TCGAAGGCTT
* * ** **
3074584 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCAAAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
*
3074629 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
3074674 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
* *
3074719 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGGCCCCAGAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGAT-GACCCGGAGGC
*
3074765 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGGAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
*
3074810 TTTAAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
3074855 TTTGAAAACATCA
1 TTTGAAAACATCA
3074868 AAAAGCTCCC
Statistics
Matches: 224, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 181 0.81
46 43 0.19
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (45 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGC
Found at i:3074827 original size:136 final size:135
Alignment explanation
Indices: 3074584--3074867 Score: 478
Period size: 136 Copynumber: 2.1 Consensus size: 135
3074574 TCGAAGGCTT
* * **
3074584 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCAAAGGCTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACTG
* *
3074649 AAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
66 AAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
3074714 GAGGC
131 GAGGC
* *
3074719 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGGCCCCAGAGGCTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGAT-GACCCAAAGGCTTTGAAAACATCATGCACT
*
3074784 GAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGATGACCC
65 GAAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGATGACCC
3074849 GGAGGC
130 GGAGGC
3074855 TTTGAAAACATCA
1 TTTGAAAACATCA
3074868 AAAAGCTCCC
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
135 30 0.22
136 109 0.78
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (135 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACTG
AAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
GAGGC
Found at i:3074905 original size:76 final size:76
Alignment explanation
Indices: 3074814--3075011 Score: 297
Period size: 76 Copynumber: 2.6 Consensus size: 76
3074804 GGAGGCTTTA
* * * ** * * *
3074814 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCG
1 AAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCA
3074879 AAGGCTTTTTG
66 AAGGCTTTTTG
* * *
3074890 AAAACATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGTTTTGGAAACATCAAAAATCTCCCA
1 AAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCA
3074955 AAGGCTTTTTG
66 AAGGCTTTTTG
3074966 AAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGA
1 AAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGA
3075012 GAATATCATG
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 109 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (76 bp):
AAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCA
AAGGCTTTTTG
Found at i:3074912 original size:497 final size:498
Alignment explanation
Indices: 3074088--3075185 Score: 1869
Period size: 497 Copynumber: 2.2 Consensus size: 498
3074078 ACCCGGAGAC
** * * **
3074088 TTTGAAAACATCATGCGTTGAAGGGCTTACAGATGACCCGGAA-GCTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCC-GAAGGCTTTGAAAACATCATGCACT
* *
3074152 GAAGGGCTTATAGATGACCCGGAGGCTTTGAAAACATCATGCACTAAAGGGCTTACAGATGACCC
65 GAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCATGCACTAAAGGGCTTACAGATGACCC
3074217 GGAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAGAGGCTTTGAAAACATCAT
130 GGAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAGAGGCTTTGAAAACATCAT
* * * * *
3074282 GCACTGAGGGGCTTACAGATGACTCGGAGGCTTTGAAAACATCATGCATTGAAGGGCTTACAGAT
195 GCACTGAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGAT
*
3074347 GACTCGGAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAG
260 GACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAG
* * * *
3074412 GTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAATGCTTTTTGAAAACATT
325 GTCTTATGGATAACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATC
3074477 CTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAG
390 CTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAG
*
3074542 ATGA-CCGAAGGCTTTGAAAACAT-AAAAAGCTCTCGAAGGCTT
455 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
3074584 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCAAAGGCTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCATGCACTG
*
3074649 AAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCG
66 AAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCATGCACTAAAGGGCTTACAGATGACCCG
*
3074714 GAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGGCCCCAGAGGCTTTGAAAACATCAT
131 GAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGAT-GACCCAGAGGCTTTGAAAACATCAT
3074779 GCACTGAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGAT
195 GCACTGAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGAT
*
3074844 GACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAG
260 GACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAG
* *
3074909 GTCTTATGGATAACCCGAAGGTTTTGGAAACATCAAAAATCTCCCAAAGGCTTTTTGAAAACATC
325 GTCTTATGGATAACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATC
3074974 CTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAG
390 CTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAG
*
3075039 ATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
455 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
* *
3075083 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACTCGAAGGCTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCATGCACTG
* * * *
3075148 AAGGGATTACAGATGACCCGAAGGTTTTAAAAATATCA
66 AAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCA
3075186 AAAAAAGCTC
Statistics
Matches: 565, Mismatches: 33, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
495 2 0.00
496 156 0.28
497 275 0.49
498 18 0.03
499 114 0.20
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (498 bp):
TTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCATGCACTG
AAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCATGCACTAAAGGGCTTACAGATGACCCG
GAGGCTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAGAGGCTTTGAAAACATCATG
CACTGAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTGAAGGGCTTACAGATG
ACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGG
TCTTATGGATAACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCC
TGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAGA
TGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
Found at i:3075010 original size:121 final size:121
Alignment explanation
Indices: 3074875--3075263 Score: 553
Period size: 121 Copynumber: 3.2 Consensus size: 121
3074865 TCAAAAAGCT
* * * ** * *
3074875 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGTTTTGGAAAC
1 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAAC
* *
3074940 ATCAAAAATCTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
64 ATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
* * * *
3074998 CCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAACAT
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
3075063 CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
66 CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
* * * * *
3075119 CTCGAAGGCTTTGAAAACATCATGCACTGAAGGGATTACAGATGACCCGAAGGTTTTAAAAATAT
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
* **
3075184 CAAAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCATTGTAGGTCTTACAGATGA
66 C--AAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
3075242 CCCGAAGGTTTTGAAAACATCA
1 CCCGAAGGTTTTGAAAACATCA
3075264 AAAAGCTCCC
Statistics
Matches: 237, Mismatches: 27, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
121 157 0.66
123 80 0.34
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (121 bp):
CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
Found at i:3075025 original size:45 final size:45
Alignment explanation
Indices: 3074961--3075064 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 45
3074951 CCCAAAGGCT
* * * **
3074961 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
* * *
3075006 TTTTGAGAATATCATGCACTGAAGGGCTTACAGATGACCCGGAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
3075051 CTTTGAAAACATCA
1 TTTTGAAAACATCA
3075065 AAAAGCTCCC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
Found at i:3075100 original size:197 final size:197
Alignment explanation
Indices: 3074765--3075392 Score: 658
Period size: 197 Copynumber: 3.2 Consensus size: 197
3074755 CCCCAGAGGC
*
3074765 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGGAGGCTTTAAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTG
3074830 AAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
66 AAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
* *
3074895 ATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGTTTTGGAAACATCAAAAATCTCCCAAAGGC
131 ATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGCTTTGAAAACATCAAAAATCTCCCAAAGGC
3074960 TT
196 TT
* * * ** * * * * *
3074962 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAGAATATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTG
3075027 AAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
66 AAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
* *
3075092 ATCCTGCACTGTAGGTCTTATGGATGACTCGAAGGCTTTGAAAACATCATGCACTGAAGGGATTA
131 ATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGCTTTGAAAACATCA---A---AA---A-T-
*
3075157 CAGATGACCCGAAGG--T
185 C---T--CCCAAAGGCTT
* * * * * *
3075173 TTT-AAAA-AT-AT-CA---AA-----AAAAGCT--CCCGAAGGCTTTTTGAAAACATCCTGCAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGC--TTTAAAAACATCATGCAC
* * * *
3075224 TGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAA
64 TGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAA
* * * ** * * * *
3075289 ACATCATGCACTGAAGGGCTTACAGATGACTCAAAGGCTTTGAAAACATCAAAAAGCTCCCAAAG
129 ACATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGCTTTGAAAACATCAAAAATCTCCCAAAG
3075354 GCTTT
194 GC-TT
3075359 TTTGAAAACATCATGCACTGAAGGGCTTACAGAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGAT
3075393 GTGGGAAATA
Statistics
Matches: 356, Mismatches: 42, Indels: 65
0.77 0.09 0.14
Matches are distributed among these distances:
183 7 0.02
185 1 0.00
186 4 0.01
187 4 0.01
188 3 0.01
189 2 0.01
190 3 0.01
193 4 0.01
196 1 0.00
197 172 0.48
198 4 0.01
199 123 0.35
200 1 0.00
203 2 0.01
204 1 0.00
206 1 0.00
207 3 0.01
208 2 0.01
209 2 0.01
210 4 0.01
211 5 0.01
213 7 0.02
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (197 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGCTTTAAAAACATCATGCACTG
AAGGGCTTACAGATGACCCGGAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
ATCCTGCACTGTAGGTCTTATGGATAACCCGAAGGCTTTGAAAACATCAAAAATCTCCCAAAGGC
TT
Found at i:3075128 original size:76 final size:74
Alignment explanation
Indices: 3074998--3075140 Score: 187
Period size: 76 Copynumber: 1.9 Consensus size: 74
3074988 TTATGGATGA
* * *
3074998 CCCGAAGGTTTTGAGAATATCATGCACTGAAGGGCTTACAGATGACCCGGAGGCTTTGAAAACAT
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
3075063 CAAAAAGCT
66 CAAAAAGCT
* * * ** *
3075072 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACTCGAAGGCTTTGAAAAC
1 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
3075137 ATCA
64 ATCA
3075141 TGCACTGAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
74 8 0.14
76 50 0.86
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (74 bp):
CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACAT
CAAAAAGCT
Found at i:3075163 original size:45 final size:45
Alignment explanation
Indices: 3075072--3075185 Score: 120
Period size: 45 Copynumber: 2.5 Consensus size: 45
3075062 TCAAAAAGCT
* * ** **
3075072 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
1 CCCGAAGGC--TTTGAAAACATCATGCACTGAAGGGATTACAGATGA
*
3075119 CTCGAAGGCTTTGAAAACATCATGCACTGAAGGGATTACAGATGA
1 CCCGAAGGCTTTGAAAACATCATGCACTGAAGGGATTACAGATGA
* * *
3075164 CCCGAAGGTTTTAAAAATATCA
1 CCCGAAGGCTTTGAAAACATCA
3075186 AAAAAAGCTC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 48 0.86
47 8 0.14
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (45 bp):
CCCGAAGGCTTTGAAAACATCATGCACTGAAGGGATTACAGATGA
Found at i:3075248 original size:78 final size:76
Alignment explanation
Indices: 3075121--3075393 Score: 406
Period size: 76 Copynumber: 3.6 Consensus size: 76
3075111 ATGGATGACT
* * *
3075121 CGAAGGC--TTTGAAAACATCATGCACTGAAGGGATTACAGATGACCCGAAGGTTTTAAAAATAT
1 CGAAGGCTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
3075184 CAAAAAAAGCTCC
66 C--AAAAAGCTCC
* * * *
3075197 CGAAGGCTTTTTGAAAACATCCTGCATTGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAACAT
1 CGAAGGCTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
3075262 CAAAAAGCTCC
66 CAAAAAGCTCC
* * *
3075273 CGAAGGCTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACTCAAAGGCTTTGAAAACAT
1 CGAAGGCTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
3075338 CAAAAAGCTCC
66 CAAAAAGCTCC
*
3075349 CAAAGGCTTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
1 CGAAGGC-TTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
3075394 TGGGAAATAG
Statistics
Matches: 179, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
76 92 0.51
77 37 0.21
78 50 0.28
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (76 bp):
CGAAGGCTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACAT
CAAAAAGCTCC
Found at i:3076101 original size:22 final size:22
Alignment explanation
Indices: 3076074--3076152 Score: 124
Period size: 22 Copynumber: 3.6 Consensus size: 22
3076064 AATAAAGCTT
* *
3076074 TCATCTTTGAAAAGAGAAT-TCA
1 TCATCTTTGAAGATAGAATCT-A
3076096 TCATCTTTGAAGATAGAATCTA
1 TCATCTTTGAAGATAGAATCTA
3076118 TCATCTTTGAAGATAGAATCTA
1 TCATCTTTGAAGATAGAATCTA
3076140 TCATCTTTGAAGA
1 TCATCTTTGAAGA
3076153 ATGTAGATGT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
22 53 0.98
23 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAGATAGAATCTA
Found at i:3079604 original size:17 final size:17
Alignment explanation
Indices: 3079582--3079651 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
3079572 CAATTTTTTC
*
3079582 TTCTTTCCTTTTTCTTT
1 TTCTTTCTTTTTTCTTT
*
3079599 TTC-TT-TTTCTTCTTT
1 TTCTTTCTTTTTTCTTT
*
3079614 TTCATCTCTTTTTTCTTT
1 TTC-TTTCTTTTTTCTTT
3079632 TT-TTCTCTTTTTTTCTTT
1 TTCTT-TC-TTTTTTCTTT
3079650 TT
1 TT
3079652 TCTGATGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
15 11 0.26
16 3 0.07
17 6 0.14
18 23 0.53
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (17 bp):
TTCTTTCTTTTTTCTTT
Found at i:3079606 original size:12 final size:14
Alignment explanation
Indices: 3079576--3079613 Score: 62
Period size: 12 Copynumber: 2.9 Consensus size: 14
3079566 TTGATTCAAT
3079576 TTTTTCTTCTTTCC
1 TTTTTCTTCTTTCC
3079590 TTTTTCTT-TTT-C
1 TTTTTCTTCTTTCC
3079602 TTTTTCTTCTTT
1 TTTTTCTTCTTT
3079614 TTCATCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
13 6 0.26
14 8 0.35
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTCTTCTTTCC
Found at i:3079613 original size:9 final size:9
Alignment explanation
Indices: 3079576--3079651 Score: 63
Period size: 8 Copynumber: 8.6 Consensus size: 9
3079566 TTGATTCAAT
3079576 TTTTTCTTC
1 TTTTTCTTC
*
3079585 -TTTCCTT-
1 TTTTTCTTC
*
3079592 TTTCTTTTTC
1 TTT-TTCTTC
3079602 TTTTTCTTC
1 TTTTTCTTC
3079611 TTTTTCATCTC
1 TTTTTC-T-TC
3079622 TTTTTTCTT-
1 -TTTTTCTTC
3079631 TTTTTC-TC
1 TTTTTCTTC
3079639 TTTTT-TTC
1 TTTTTCTTC
3079647 TTTTT
1 TTTTT
3079652 TCTGATGAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 17
0.72 0.05 0.22
Matches are distributed among these distances:
7 1 0.02
8 26 0.47
9 14 0.25
10 5 0.09
11 3 0.05
12 6 0.11
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:3079631 original size:18 final size:17
Alignment explanation
Indices: 3079590--3079651 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 17
3079580 TCTTCTTTCC
3079590 TTTTTCTTTTTCT-T-T
1 TTTTTCTTTTTCTCTCT
*
3079605 TTCTTCTTTTTCATCTCT
1 TTTTTCTTTTTC-TCTCT
*
3079623 TTTTTCTTTTTTTCTCTT
1 TTTTTCTTTTTCTCTC-T
3079641 TTTTTCTTTTT
1 TTTTTCTTTTT
3079652 TCTGATGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
15 11 0.28
16 1 0.03
17 5 0.12
18 23 0.57
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTCTTTTTCTCTCT
Found at i:3079651 original size:6 final size:6
Alignment explanation
Indices: 3079576--3079609 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
3079566 TTGATTCAAT
3079576 TTTTTC TTCTTTCC TTTTTC TTTTTC TTTTTC TT
1 TTTTTC TT-TTT-C TTTTTC TTTTTC TTTTTC TT
3079610 CTTTTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 17 0.65
7 6 0.23
8 3 0.12
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:3079652 original size:9 final size:9
Alignment explanation
Indices: 3079596--3079652 Score: 62
Period size: 9 Copynumber: 6.3 Consensus size: 9
3079586 TTCCTTTTTC
3079596 TTTTTCTTT
1 TTTTTCTTT
*
3079605 TTCTTCTTT
1 TTTTTCTTT
** *
3079614 TTCATCTCT
1 TTTTTCTTT
3079623 TTTTTC-TT
1 TTTTTCTTT
3079631 TTTTTCTCTT
1 TTTTTCT-TT
3079641 TTTTTCTTT
1 TTTTTCTTT
3079650 TTT
1 TTT
3079653 CTGATGAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 7 0.17
9 24 0.60
10 9 0.22
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:3079652 original size:18 final size:20
Alignment explanation
Indices: 3079602--3079652 Score: 79
Period size: 18 Copynumber: 2.6 Consensus size: 20
3079592 TTTCTTTTTC
3079602 TTTTTCTTCTTTTTCATCTCT
1 TTTTTCTT-TTTTTCATCTCT
3079623 TTTTTCTTTTTTTC-TCT-T
1 TTTTTCTTTTTTTCATCTCT
3079641 TTTTTCTTTTTT
1 TTTTTCTTTTTT
3079653 CTGATGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 13 0.43
19 3 0.10
20 6 0.20
21 8 0.27
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTCTTTTTTTCATCTCT
Found at i:3082135 original size:14 final size:14
Alignment explanation
Indices: 3082118--3082189 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 14
3082108 CAAACTGCGC
*
3082118 AATACAAAGATGCA
1 AATACAAAAATGCA
* *
3082132 AATATAAAAATGAA
1 AATACAAAAATGCA
*
3082146 AATATAAAAATGCA
1 AATACAAAAATGCA
*
3082160 AATGC--AAATGCAA
1 AATACAAAAATGC-A
3082173 ACATA-AAAAATGCA
1 A-ATACAAAAATGCA
3082187 AAT
1 AAT
3082190 GTAATGAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
12 6 0.13
13 4 0.09
14 31 0.66
15 6 0.13
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (14 bp):
AATACAAAAATGCA
Found at i:3082178 original size:26 final size:26
Alignment explanation
Indices: 3082139--3082222 Score: 89
Period size: 26 Copynumber: 3.2 Consensus size: 26
3082129 GCAAATATAA
*
3082139 AAATGAAAATATAAAAATGCAAATGC
1 AAATGAAAAAATAAAAATGCAAATGC
* *
3082165 AAATGCAAACATAAAAAATGCAAATG-
1 AAATGAAAAAAT-AAAAATGCAAATGC
* **
3082191 TAATGAAAAAATACGAATGCAAAATGC
1 AAATGAAAAAATAAAAATGC-AAATGC
3082218 AAATG
1 AAATG
3082223 CAACAAAAGG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
25 6 0.13
26 24 0.51
27 17 0.36
ACGTcount: A:0.60, C:0.10, G:0.13, T:0.18
Consensus pattern (26 bp):
AAATGAAAAAATAAAAATGCAAATGC
Found at i:3082493 original size:21 final size:21
Alignment explanation
Indices: 3082469--3082520 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
3082459 TGAGCAGCAG
3082469 CTTCCTTCATGACATTGTCTT
1 CTTCCTTCATGACATTGTCTT
3082490 CTTCCTTCATGACATTGTCTT
1 CTTCCTTCATGACATTGTCTT
3082511 CTTCCTTCAT
1 CTTCCTTCAT
3082521 CTTCTGTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.13, C:0.31, G:0.08, T:0.48
Consensus pattern (21 bp):
CTTCCTTCATGACATTGTCTT
Found at i:3085272 original size:2 final size:2
Alignment explanation
Indices: 3085265--3085297 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3085255 AAAAATGAAG
3085265 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3085298 TTATTTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3085560 original size:27 final size:27
Alignment explanation
Indices: 3085517--3085569 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
3085507 GTCATTTCTT
3085517 AAAAAATAAATAAATAT-TATTATTTAA
1 AAAAAATAAATAAATATATA-TATTTAA
* *
3085544 AAAAAATATATATATATATATATTTA
1 AAAAAATAAATAAATATATATATTTA
3085570 TATGACTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (27 bp):
AAAAAATAAATAAATATATATATTTAA
Found at i:3087307 original size:23 final size:23
Alignment explanation
Indices: 3087281--3087341 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
3087271 CACCACAGCT
*
3087281 CGTATAATTGCACC-GAAGTGCCA
1 CGTAGAATTGCACCAG-AGTGCCA
* *
3087304 CGTAGAATTGCACCAGAGTGTCG
1 CGTAGAATTGCACCAGAGTGCCA
3087327 CGTAGAATTGCACCA
1 CGTAGAATTGCACCA
3087342 TAGTTCCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 33 0.97
24 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (23 bp):
CGTAGAATTGCACCAGAGTGCCA
Found at i:3087600 original size:30 final size:30
Alignment explanation
Indices: 3087559--3087627 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
3087549 ACATAATTTG
* * * *
3087559 TATCACGTAGACATATTATTTTCATATCTT
1 TATCACATAGACATATCATTTCCATACCTT
3087589 TATCACATAGACATATCATTTCCATACCTT
1 TATCACATAGACATATCATTTCCATACCTT
3087619 TATCACATA
1 TATCACATA
3087628 ACTCATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (30 bp):
TATCACATAGACATATCATTTCCATACCTT
Done.