genome.fa.s9588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009588.1 Hibiscus syriacus cultivar Beakdansim tig00116967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190935

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2393--2440	21	2.3	20	85	7	60	22	10	4	62	1.44
10315--11073	105	7.2	105	93	1	1222	33	26	18	21	1.96
11418--11482	2	33.5	2	84	6	89	46	1	0	52	1.10
12426--12551	63	2.0	63	93	0	216	23	22	17	36	1.95
13048--13086	12	3.2	12	96	0	69	41	2	7	48	1.45
13048--13124	12	6.8	12	77	16	67	35	3	7	53	1.48
14110--14925	417	2.0	410	87	5	1183	43	6	6	42	1.57
15487--15511	3	8.3	3	100	0	50	68	32	0	0	0.90
26143--26208	3	21.0	3	87	9	96	65	0	1	33	1.02
26391--26561	75	2.3	73	89	4	254	34	20	18	26	1.95
30027--30057	7	4.4	7	100	0	62	29	0	0	70	0.87
30419--30481	34	1.9	34	84	12	87	63	0	6	30	1.19
30410--30481	34	2.1	34	82	7	83	66	0	6	26	1.16
30508--30541	17	2.0	17	88	0	50	73	2	0	23	0.97
32087--32124	17	2.2	17	100	0	76	18	23	39	18	1.92
36031--36075	22	2.1	22	83	4	56	37	33	17	11	1.85
36766--36983	103	2.1	103	92	0	355	27	13	23	35	1.93
41811--41859	22	2.2	22	82	7	64	32	30	28	8	1.86
42552--42769	103	2.1	103	95	1	393	25	13	23	37	1.92
42776--42895	47	2.6	47	89	1	179	24	22	22	30	1.99
42776--42900	23	5.3	23	75	2	115	24	21	22	31	1.98
47741--47790	5	9.8	5	79	12	57	4	22	52	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47759--47785	14	1.9	14	100	0	54	0	22	51	25	1.48
48615--48840	73	3.2	71	79	10	246	55	13	1	29	1.46
66438--66472	18	1.9	18	88	0	52	17	20	11	51	1.75
69034--69193	65	2.5	65	84	5	191	28	17	23	30	1.97
69034--69243	65	3.2	64	78	14	166	28	17	23	30	1.97
70359--70402	21	2.1	21	82	0	52	36	15	38	9	1.80
77826--78035	65	3.2	64	78	7	194	28	17	22	31	1.97
79832--80060	57	4.0	57	90	0	332	14	18	30	35	1.91
81213--81259	24	2.0	24	91	0	76	21	19	27	31	1.97
83551--83626	2	38.5	2	97	2	145	0	0	50	50	1.00
84253--84286	16	2.1	16	94	0	59	32	0	26	41	1.56
90019--90097	38	2.1	38	97	0	149	32	15	15	36	1.88
101827--101889	19	3.2	20	78	8	58	57	12	0	30	1.36
101836--102010	76	2.3	75	86	3	228	58	9	2	29	1.43
103676--103721	19	2.3	20	81	3	58	80	4	2	13	0.95
107616--107649	15	2.3	15	89	0	50	5	23	20	50	1.70
112000--112280	149	1.9	149	95	0	508	35	20	14	29	1.93
113959--114001	22	2.0	22	85	0	59	16	27	27	27	1.97
115797--115960	76	2.2	76	88	3	242	56	10	2	29	1.47
120057--120117	31	2.0	31	90	0	95	50	9	14	24	1.73
120371--120395	12	2.1	12	100	0	50	60	0	0	40	0.97
120366--120421	20	3.1	18	87	7	69	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127235--127425	94	2.0	95	98	1	375	27	19	21	31	1.98
130254--130288	8	4.4	8	100	0	70	11	0	0	88	0.51
130700--130839	59	2.3	58	80	9	149	35	21	3	40	1.71
131013--131160	60	2.5	60	82	1	172	36	4	22	35	1.76
135732--135777	21	2.2	21	88	0	65	13	21	39	26	1.90
136702--136728	13	2.1	13	100	0	54	33	14	14	37	1.88
136724--136823	14	7.4	14	72	13	50	40	28	1	31	1.63
136784--136824	7	6.0	7	88	5	57	43	19	0	36	1.51
136777--136823	13	3.5	14	82	8	62	42	21	0	36	1.53
136786--136824	20	2.0	20	89	0	60	46	17	0	35	1.49
137227--137275	20	2.5	20	100	0	98	32	18	14	34	1.91
138183--138218	16	2.3	15	90	4	54	41	0	5	52	1.24
138363--138423	17	3.6	17	90	0	104	27	29	24	18	1.98
138663--138724	32	2.0	31	84	9	81	48	9	12	29	1.73
153457--153592	73	1.9	73	90	0	218	30	6	9	53	1.59
153966--154015	2	25.0	2	100	0	100	50	0	0	50	1.00
161993--162040	24	2.0	24	91	0	78	20	39	6	33	1.78

Tables:   1

The End!