Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000959.1 Hibiscus syriacus cultivar Beakdansim tig00001918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 83780
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:773 original size:2 final size:2
Alignment explanation
Indices: 766--847 Score: 139
Period size: 2 Copynumber: 41.5 Consensus size: 2
756 CATAATTTCA
*
766 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
808 AT AT A- AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
848 AATGTTATTA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
1 1 0.01
2 74 0.99
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2540 original size:26 final size:26
Alignment explanation
Indices: 2485--2540 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
2475 AAAATGGCCA
*
2485 AAATACCTCAAGCTCCAAAATAATTG
1 AAATACCTCAAGCTCCAAAATAACTG
* * *
2511 AAATACCCTCGAGCTCCTAAATGACT-
1 AAATA-CCTCAAGCTCCAAAATAACTG
2537 AAAT
1 AAAT
2541 TAACATTGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.43, C:0.25, G:0.09, T:0.23
Consensus pattern (26 bp):
AAATACCTCAAGCTCCAAAATAACTG
Found at i:2709 original size:3 final size:3
Alignment explanation
Indices: 2693--2726 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
2683 CTTTTATTTT
2693 TTA TT- TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
2727 ATAAAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 25 0.86
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4187 original size:24 final size:24
Alignment explanation
Indices: 4140--4187 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
4130 ATTAATTTCA
4140 CAAATTGATTAAATAATAATATTT
1 CAAATTGATTAAATAATAATATTT
*
4164 CAAATTGATTTAATAATAATATTT
1 CAAATTGATTAAATAATAATATTT
4188 ATTTAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
CAAATTGATTAAATAATAATATTT
Found at i:5564 original size:23 final size:21
Alignment explanation
Indices: 5521--5564 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
5511 GTACTAACCA
*
5521 TTTTATTTTTTTCTTTCTCAT
1 TTTTATTTTTTTATTTCTCAT
*
5542 TTTTATTCATTTTTATTTTTCAT
1 TTTTATT--TTTTTATTTCTCAT
5565 ACATTTTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTATTTTTTTATTTCTCAT
Found at i:5663 original size:16 final size:16
Alignment explanation
Indices: 5639--5669 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5629 CATTTCTAAA
5639 TCATGCATTAAAATAT
1 TCATGCATTAAAATAT
*
5655 TCATTCATTAAAATA
1 TCATGCATTAAAATA
5670 AGGATTTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (16 bp):
TCATGCATTAAAATAT
Found at i:6166 original size:20 final size:20
Alignment explanation
Indices: 6141--6189 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
6131 GGTTGAAAAG
6141 GAAAAAT-TCTCCCAACAACT
1 GAAAAATAT-TCCCAACAACT
*
6161 GAAAAATATTCCCAACGACT
1 GAAAAATATTCCCAACAACT
6181 GAAAAATAT
1 GAAAAATAT
6190 AGAAGAAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.49, C:0.22, G:0.08, T:0.20
Consensus pattern (20 bp):
GAAAAATATTCCCAACAACT
Found at i:7814 original size:68 final size:71
Alignment explanation
Indices: 7741--7873 Score: 173
Period size: 70 Copynumber: 1.9 Consensus size: 71
7731 ATATACATAA
* * * *
7741 AGCTTGAGTTATCC-CCTAGAGCAATTGG-TGATAGCCCCGGCTTTATAGAT-ATATTCAGCTAG
1 AGCTTGAGTTATCCTCCTAAAGCAATTGGTTAATAGACCCAGCTTTATAGATAATATTCAGCTAG
7803 TCTGTT
66 TCTGTT
* * * *
7809 AGCTTGAGTTGTCCTCCTAAAGTAATTGGTTAATAGACCTAGCTTTATGGATAATATTCAGCTAG
1 AGCTTGAGTTATCCTCCTAAAGCAATTGGTTAATAGACCCAGCTTTATAGATAATATTCAGCTAG
7874 CCTTTTATTC
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
68 13 0.24
69 12 0.22
70 17 0.31
71 12 0.22
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (71 bp):
AGCTTGAGTTATCCTCCTAAAGCAATTGGTTAATAGACCCAGCTTTATAGATAATATTCAGCTAG
TCTGTT
Found at i:9612 original size:54 final size:54
Alignment explanation
Indices: 9530--9691 Score: 234
Period size: 54 Copynumber: 3.0 Consensus size: 54
9520 TTGACGAGAA
* **
9530 ATCTGGGCAGAAGCTACATAAAAGGATGAATGTGTTGTCAAATGTTTTGCGAAC
1 ATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTGCGAAC
* *
9584 ATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTGTGAAT
1 ATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTGCGAAC
* * * * *
9638 ATCTAGGTAGAAGCCATAGGAAAGGATGAATGTGTTGTAAAATGTTTTACGAAC
1 ATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTGCGAAC
9692 CAGTATTTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (54 bp):
ATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTGCGAAC
Found at i:10713 original size:123 final size:122
Alignment explanation
Indices: 10468--11436 Score: 1194
Period size: 123 Copynumber: 8.0 Consensus size: 122
10458 ACAATGGATC
* *
10468 ACATTTCTAGA-AGGAGTTCGTAATAAG-A-AACTCATCTGAAGAGGAAGAAGAAGTTCATAGTC
1 ACATTTCCAGACA-GAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* * * * *
10530 TGAAGAAC-TATTCAACCTTTTACTTGACTCTATCGTAGAAAGAGATAGAGCAGCAGA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCATA
* * *
10587 ACCATTTCCAGACAGAGCTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTG
1 A-CATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* * * **
10652 TGAAGAACTTATTCAACTTTTTACTTGACTCTATCGCAGAAGGAGATAGAGCAATATA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCATA
* * *
10710 ACCATTTCCAGACAAAGTTCGTAAT---AAGAACTCCTCTGAAGAGGAAGAAGAAGTTCATAGTC
1 A-CATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* * * * *
10772 TGAATAACTTATTCAACCTTTTGCTTGACTCTATCACAGAAGGAGATAGAGTAGCAGA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCATA
* * * *
10830 ACCATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATATGAAGATGAAGAAGAAGTTCATAGTT
1 A-CATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* * * *
10895 TGAAGAACTTATTCAACATTTTGCTCGACTTTATCGCAGAAGGATATAAAGCAGCATCA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCAT-A
* *
10954 ACATTTCCAGA-AGAAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTTATAATC
1 ACATTTCCAGACAG-AGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* * *
11018 TGAAGAACTTATTCAACCTTTTGGTCGACTTTATCGCAGAAGGAGATA-AACAGCATCA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCAT-A
* * * * * *
11076 ATATTTCCAGACATAGTTCATAAT-AGAAGAAGTCATCTGAAGAGGAAGAAAAAATTCATAATCT
1 ACATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCT
* * *
11140 GAAGAACTTATACAACCTTTTGCTCGACTTTATCGCAGAA-G-GATAAAGCAGCATCA
66 GAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCAT-A
* * * * * *
11196 ACATTTTCAGA-AGAAATTCATAATAATAAGAACTCATTTGAAGAGAAAGAAGAAGTTCATAATC
1 ACATTTCCAGACAG-AGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATC
* *
11260 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAAAGCGGCATCA
65 TGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCAT-A
11319 ACATTTCCAGA-AGGAGTTCGTAATGAA-AAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAAT
1 ACATTTCCAGACA-GAGTTCGTAAT-AAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAAT
* * ** **
11382 CTGAAGAACTTATTCAACCTTTTGCTCAATTCTATTACAGAAAAAGATAGAGCAG
64 CTGAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAG
11437 TATCAAAATT
Statistics
Matches: 752, Mismatches: 80, Indels: 32
0.87 0.09 0.04
Matches are distributed among these distances:
119 6 0.01
120 159 0.21
121 149 0.20
122 72 0.10
123 361 0.48
124 5 0.01
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (122 bp):
ACATTTCCAGACAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCT
GAAGAACTTATTCAACCTTTTGCTCGACTCTATCGCAGAAGGAGATAGAGCAGCATA
Found at i:11311 original size:365 final size:364
Alignment explanation
Indices: 10488--11408 Score: 1230
Period size: 365 Copynumber: 2.5 Consensus size: 364
10478 AAGGAGTTCG
* *
10488 TAATAAGAAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTCTGAAGAAC-TATTCAACCTTTTA
1 TAATAAG-AACTCATATGAAGA-GAAGAAGAAGTTCATAGTCTGAAGAACTTATTCAACCTTTTG
* * * * * *
10552 CTTGACTCTATCGTAGAAAGAGATAGAGCAGCA-GAACCATTTCCAGACAGAGCTCGTAATAAGA
64 CTCGACTCTATCGCAGAAGGAGATAAAGCAGCATCAA-CATTTCCAGA-AGAGTTCGTAATAAGA
* * * * *
10616 AGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTGTGAAGAACTTATTCAACTTTTTACTTGAC
127 AGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGCTCGAC
* * * *
10681 TCTATCGCAGAAGGAGATAGAGCAATATAACCATTTCCAGACAAAGTTCGTAATAAGAACTCCTC
192 TCTATCGCAGAAGGAGATAGAACAACATAACCATTTCCAGACAAAGTTCATAATAAGAACTCATC
* * * * * *
10746 TGAAGAGGAAGAAGAAGTTCATAGTCTGAATAACTTATTCAACCTTTTGCTTGACTCTATCACAG
257 TGAAGAGGAAGAAAAAATTCATAATCTGAAGAACTTATACAACCTTTTGCTCGACTCTATCACAG
* * * * *
10811 AAGGAGATAGAGTAGCAGAACCATTTCCAGACAGAGTTCGTAA
322 AAGGAGATAAAGCAGCACAACCATTTCCAGACAGAATTCATAA
* * *
10854 TAAGAAGAACTCATATGAAGATGAAGAAGAAGTTCATAGTTTGAAGAACTTATTCAACATTTTGC
1 TAATAAGAACTCATATGAAGA-GAAGAAGAAGTTCATAGTCTGAAGAACTTATTCAACCTTTTGC
* *
10919 TCGACTTTATCGCAGAAGGATATAAAGCAGCATCAACATTTCCAGAAGAAGTTCGTAATAAGAAG
65 TCGACTCTATCGCAGAAGGAGATAAAGCAGCATCAACATTTCCAGAAG-AGTTCGTAATAAGAAG
* * * *
10984 AACTCATCTGAAGAGGAAGAAAAAGTTTATAATCTGAAGAACTTATTCAACCTTTTGGTCGACTT
129 AACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGCTCGACTC
* * * *
11049 TATCGCAGAAGGAGATA-AACAGCATCAA-TATTTCCAGACATAGTTCATAATAGAAGAAGTCAT
194 TATCGCAGAAGGAGATAGAACAACAT-AACCATTTCCAGACAAAGTTCATAAT--AAGAACTCAT
* *
11112 CTGAAGAGGAAGAAAAAATTCATAATCTGAAGAACTTATACAACCTTTTGCTCGACTTTATCGCA
256 CTGAAGAGGAAGAAAAAATTCATAATCTGAAGAACTTATACAACCTTTTGCTCGACTCTATCACA
*
11177 GAA-G-GATAAAGCAGCATCAA-CATTTTCAGA-AGAAATTCATAA
321 GAAGGAGATAAAGCAGCA-CAACCATTTCCAGACAG-AATTCATAA
* *
11219 TAATAAGAACTCATTTGAAGAGAAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGC
1 TAATAAGAACTCATATGAAGAG-AAGAAGAAGTTCATAGTCTGAAGAACTTATTCAACCTTTTGC
*
11284 TCGACTCTATCGCAGAAGGAGATAAAGCGGCATCAACATTTCCAGAAGGAGTTCGTAATGAA-AA
65 TCGACTCTATCGCAGAAGGAGATAAAGCAGCATCAACATTTCCAGAA-GAGTTCGTAAT-AAGAA
11348 GAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGCTC
128 GAACTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGCTC
11409 AATTCTATTA
Statistics
Matches: 488, Mismatches: 56, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
364 3 0.01
365 264 0.54
366 151 0.31
367 70 0.14
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (364 bp):
TAATAAGAACTCATATGAAGAGAAGAAGAAGTTCATAGTCTGAAGAACTTATTCAACCTTTTGCT
CGACTCTATCGCAGAAGGAGATAAAGCAGCATCAACATTTCCAGAAGAGTTCGTAATAAGAAGAA
CTCATCTGAAGAGGAAGAAGAAGTTCATAATCTGAAGAACTTATTCAACCTTTTGCTCGACTCTA
TCGCAGAAGGAGATAGAACAACATAACCATTTCCAGACAAAGTTCATAATAAGAACTCATCTGAA
GAGGAAGAAAAAATTCATAATCTGAAGAACTTATACAACCTTTTGCTCGACTCTATCACAGAAGG
AGATAAAGCAGCACAACCATTTCCAGACAGAATTCATAA
Found at i:13301 original size:2 final size:2
Alignment explanation
Indices: 13294--13362 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
13284 AAACCCTAAG
13294 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13336 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13363 TTACTTTAGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24589 original size:15 final size:15
Alignment explanation
Indices: 24569--24599 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24559 GATTAACTCT
24569 GTTTACTTGTCTATG
1 GTTTACTTGTCTATG
24584 GTTTACTTGTCTATG
1 GTTTACTTGTCTATG
24599 G
1 G
24600 CTTCTAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.23, T:0.52
Consensus pattern (15 bp):
GTTTACTTGTCTATG
Found at i:31596 original size:22 final size:22
Alignment explanation
Indices: 31568--31611 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31558 TTATTTAGTC
*
31568 TAAATATGAAAGTAAGAGATCT
1 TAAATATAAAAGTAAGAGATCT
31590 TAAATATAAAAGTAAGAGATCT
1 TAAATATAAAAGTAAGAGATCT
31612 GGTTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.27
Consensus pattern (22 bp):
TAAATATAAAAGTAAGAGATCT
Found at i:44730 original size:16 final size:16
Alignment explanation
Indices: 44711--44819 Score: 59
Period size: 16 Copynumber: 6.8 Consensus size: 16
44701 AATGAGAAGA
44711 AGAAAAAGAAAAAATG
1 AGAAAAAGAAAAAATG
*
44727 AGAAAAA-AGGAAAATG
1 AGAAAAAGA-AAAAATG
*
44743 ATGGAAAAA-ACGAAAA-G
1 A--GAAAAAGA-AAAAATG
*
44760 AAAAAGGAAGAAAAAATG
1 AGAAA--AAGAAAAAATG
*
44778 -GAAAATGAAAAAA-G
1 AGAAAAAGAAAAAATG
*
44792 AGAAAAATGAAAAAAAG
1 AGAAAAA-GAAAAAATG
*
44809 A-AAAAATAAAA
1 AGAAAAAGAAAA
44820 GGAGAGTTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
14 1 0.01
15 21 0.28
16 26 0.35
17 13 0.17
18 14 0.19
ACGTcount: A:0.73, C:0.01, G:0.19, T:0.06
Consensus pattern (16 bp):
AGAAAAAGAAAAAATG
Found at i:44733 original size:50 final size:49
Alignment explanation
Indices: 44664--44789 Score: 118
Period size: 50 Copynumber: 2.6 Consensus size: 49
44654 AAGAAGAAAT
* *
44664 AAAAGAGAAAAAAT-A-AAAAATGAAAAATAAT-AATAAAAATGAGAAGA
1 AAAAAAGAAAAAATGAGAAAAATGAAAAATAATGAA-AAAAACGAGAAGA
* * * * *
44711 AGAAAAAGAAAAAATGAGAAAAAAGGAAAATGATGGAAAAAACGAAAAGA
1 A-AAAAAGAAAAAATGAGAAAAATGAAAAATAATGAAAAAAACGAGAAGA
44761 AAAAGGAAGAAAAAATG-G-AAAATGAAAAA
1 AAAA--AAGAAAAAATGAGAAAAATGAAAAA
44790 AGAGAAAAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
47 1 0.02
48 12 0.19
49 13 0.20
50 26 0.41
51 12 0.19
ACGTcount: A:0.72, C:0.01, G:0.18, T:0.09
Consensus pattern (49 bp):
AAAAAAGAAAAAATGAGAAAAATGAAAAATAATGAAAAAAACGAGAAGA
Found at i:44774 original size:24 final size:24
Alignment explanation
Indices: 44747--44798 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
44737 AAAATGATGG
*
44747 AAAAAACGAAAA-GAAAAAGGAAGA
1 AAAAAACGAAAATGAAAAAAG-AGA
**
44771 AAAAATGGAAAATGAAAAAAGAGA
1 AAAAAACGAAAATGAAAAAAGAGA
44795 AAAA
1 AAAA
44799 TGAAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.04
Consensus pattern (24 bp):
AAAAAACGAAAATGAAAAAAGAGA
Found at i:44787 original size:15 final size:16
Alignment explanation
Indices: 44779--44813 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
44769 GAAAAAATGG
44779 AAAATGAAAAAAGAGA
1 AAAATGAAAAAAGAGA
44795 AAAATGAAAAAA-AGA
1 AAAATGAAAAAAGAGA
44810 AAAA
1 AAAA
44814 ATAAAAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AAAATGAAAAAAGAGA
Found at i:46143 original size:37 final size:37
Alignment explanation
Indices: 46085--46168 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
46075 GTTGGATCTT
* *
46085 TGAAACAAATCAATCAAAAGCCTTCACGGAAGAGTAG
1 TGAAGCAAATCAATCAAAAGCCTTCACGAAAGAGTAG
*
46122 TGAAGCAAATC-ATCTATAAGCCTTCACGAAAGAGTAG
1 TGAAGCAAATCAATC-AAAAGCCTTCACGAAAGAGTAG
46159 TGAAGCAAAT
1 TGAAGCAAAT
46169 TCATTTGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 3 0.07
37 40 0.93
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (37 bp):
TGAAGCAAATCAATCAAAAGCCTTCACGAAAGAGTAG
Found at i:46235 original size:51 final size:51
Alignment explanation
Indices: 46175--46427 Score: 443
Period size: 51 Copynumber: 4.9 Consensus size: 51
46165 AAATTCATTT
46175 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
46226 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
46277 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
*
46328 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTT
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
* *
46379 GTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGAC
1 GTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
46428 CCGTTTCATG
Statistics
Matches: 195, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
51 160 0.82
54 2 0.01
55 33 0.17
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (51 bp):
GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
Found at i:46427 original size:55 final size:55
Alignment explanation
Indices: 46185--46643 Score: 482
Period size: 55 Copynumber: 8.6 Consensus size: 55
46175 GTTGAAGATT
* *
46185 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* *
46236 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* *
46287 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
*
46338 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* ** **
46393 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTCATGAAGATTGTTC
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* * * ** * *
46448 GAGTTCTACACTCCCTGAACGAATAGGGAGTAGACACGTTTGCTGAAGATTGTTC
1 GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* * * * * *
46503 GAG-TCTTATACTCCCTGAACGAATATGGAGCAGACACGTTTGCTGAAGATTGTTC
1 GAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
* * * * *
46558 GAG-TCTTATACTCCCTGAATGAATAGGGAGCAGTCATGTTT-TCTGAAGATTGTTC
1 GAGTTC-TATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGT-TGAAGATTGTTC
* *
46613 GAG-TCTTATACTCCCTGAACGAATAGGGAGC
1 GAGTTC-TATACTCTCTGAAGGAATAGGGAGC
46644 AGACTCGTCA
Statistics
Matches: 377, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
51 150 0.40
54 4 0.01
55 223 0.59
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (55 bp):
GAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
Found at i:52006 original size:23 final size:24
Alignment explanation
Indices: 51961--52010 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
51951 TGATTTATAA
* *
51961 CATGTTTATTGCTTGATTTGAAAG
1 CATGTTTACTACTTGATTTGAAAG
51985 CATGTTTACTACTT-ATTTGAAAG
1 CATGTTTACTACTTGATTTGAAAG
52008 CAT
1 CAT
52011 AATTTCTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (24 bp):
CATGTTTACTACTTGATTTGAAAG
Found at i:52661 original size:21 final size:20
Alignment explanation
Indices: 52613--52662 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
52603 TCTTCCAAAC
52613 TGTTTT-TATTTTGGTGACA
1 TGTTTTATATTTTGGTGACA
*
52632 TGTGCTTATATTTTGGAATG-CA
1 TGT-TTTATATTTTGG--TGACA
52654 TGTTTTATA
1 TGTTTTATA
52663 ACGTATACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
21 13 0.52
22 5 0.20
23 2 0.08
ACGTcount: A:0.20, C:0.06, G:0.20, T:0.54
Consensus pattern (20 bp):
TGTTTTATATTTTGGTGACA
Found at i:56885 original size:23 final size:24
Alignment explanation
Indices: 56823--56898 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 24
56813 TTTATCACTT
*
56823 TATTGTTTAGGATTTAT-TTTT--C
1 TATT-TTTAGGATTTATCTTTTAGA
56845 TATTATTTAGGATTTTATCTTTT-GAA
1 TATT-TTTAGGA-TTTATCTTTTAG-A
56871 TATTTTTAGGA-TTATCTTTTAGA
1 TATTTTTAGGATTTATCTTTTAGA
56894 TATTT
1 TATTT
56899 CATTTGAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
22 11 0.23
23 20 0.43
24 5 0.11
25 7 0.15
26 4 0.09
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.61
Consensus pattern (24 bp):
TATTTTTAGGATTTATCTTTTAGA
Found at i:57049 original size:12 final size:12
Alignment explanation
Indices: 57024--57061 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
57014 TTTCATTTTC
*
57024 TTTTATTTTTGT
1 TTTTATTTTAGT
*
57036 TTTTACTTTAGT
1 TTTTATTTTAGT
57048 TTTTATTTTA-T
1 TTTTATTTTAGT
57059 TTT
1 TTT
57062 CTTTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.13, C:0.03, G:0.05, T:0.79
Consensus pattern (12 bp):
TTTTATTTTAGT
Found at i:61236 original size:25 final size:26
Alignment explanation
Indices: 61182--61238 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
61172 TTTTATCAAA
* *
61182 AATATTAAACATTTTAAATAACAACC
1 AATATTAAACATTTTAAATAAAAAAC
*
61208 AATATT-AACATTTTAAATAAAAAAT
1 AATATTAAACATTTTAAATAAAAAAC
61233 AATATT
1 AATATT
61239 TTAAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.79
26 6 0.21
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (26 bp):
AATATTAAACATTTTAAATAAAAAAC
Found at i:63043 original size:16 final size:16
Alignment explanation
Indices: 63022--63066 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
63012 TCCCCACCCG
*
63022 TGAAGCTACTTCCCCA
1 TGAAGCTACTCCCCCA
63038 TGAAGCTACTCCCCCA
1 TGAAGCTACTCCCCCA
63054 TGAAGCTACTCCC
1 TGAAGCTACTCCC
63067 ATAGCAGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.24, C:0.40, G:0.13, T:0.22
Consensus pattern (16 bp):
TGAAGCTACTCCCCCA
Found at i:63115 original size:13 final size:13
Alignment explanation
Indices: 63097--63121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63087 TGGCAGCAGG
63097 AATAATGCATTGC
1 AATAATGCATTGC
63110 AATAATGCATTG
1 AATAATGCATTG
63122 GATGGTGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
AATAATGCATTGC
Found at i:63217 original size:4 final size:4
Alignment explanation
Indices: 63194--63235 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
63184 GGAGAACAAT
* * *
63194 GAAA GGAA GAAA GGAA GAAA GAAA GAAA GAAA G-GA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
63236 TCGGGTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:63217 original size:20 final size:19
Alignment explanation
Indices: 63194--63235 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
63184 GGAGAACAAT
*
63194 GAAAGGAAGAAAGGAAGAAA
1 GAAAGAAAGAAAGG-AGAAA
63214 GAAAGAAAGAAAGGAGAAA
1 GAAAGAAAGAAAGGAGAAA
63233 GAA
1 GAA
63236 TCGGGTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (19 bp):
GAAAGAAAGAAAGGAGAAA
Found at i:72118 original size:21 final size:21
Alignment explanation
Indices: 72043--72118 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
72033 ATTAAGCCTT
* * *
72043 GAGGAGAGATGATGGTGATCG
1 GAGGAGCGACGATGGTGACCG
* *
72064 GAGGAGGGACGATGGTGACCT
1 GAGGAGCGACGATGGTGACCG
* *
72085 GAGGAGCGTCGATGGTGGCCG
1 GAGGAGCGACGATGGTGACCG
72106 GAGGCA-CGACGAT
1 GAGG-AGCGACGAT
72119 TGTAAGCGGG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 44 0.98
22 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.47, T:0.14
Consensus pattern (21 bp):
GAGGAGCGACGATGGTGACCG
Found at i:73541 original size:14 final size:15
Alignment explanation
Indices: 73501--73553 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 15
73491 TATAGTATTA
*
73501 TTATAATTATAATTAT
1 TTATAATT-TATTTAT
* *
73517 TT-TATTTTATTTTT
1 TTATAATTTATTTAT
73531 TTA-AATTTATTTAT
1 TTATAATTTATTTAT
73545 TTATAATTT
1 TTATAATTT
73554 TATAATTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 19 0.63
15 9 0.30
16 2 0.07
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATAATTTATTTAT
Found at i:74314 original size:48 final size:44
Alignment explanation
Indices: 74247--74496 Score: 211
Period size: 44 Copynumber: 5.6 Consensus size: 44
74237 GGCACCCTTT
* * * *
74247 TGCCAAAATGCACCATTATGTATTTAAGTTTCATTTGTGGCACATTTC
1 TGCCAAAATGCACCGTTATGCATTT---TTT-ATTTATGGCACATTTA
*
74295 TGCCAAAATGTACCGTTATGCA-TTTTTATTTATGGCACATTTA
1 TGCCAAAATGCACCGTTATGCATTTTTTATTTATGGCACATTTA
* * *
74338 TGCCAATAATGCACCGTTATGCA-TTTTCATTTATGGCACTTTTC
1 TGCCAA-AATGCACCGTTATGCATTTTTTATTTATGGCACATTTA
* * * * * * *
74382 TACCAATAATGCACCGTTATGCA-TTTTCATTTCTAGTACCTTTC
1 TGCCAA-AATGCACCGTTATGCATTTTTTATTTATGGCACATTTA
* * *
74426 TGCCAATAATGCACCGTTATGCA-TTTTCATTTATGGCACCTTTC
1 TGCCAA-AATGCACCGTTATGCATTTTTTATTTATGGCACATTTA
* * *
74470 TTCCAATAATACACCATTATGCATTTT
1 TGCCAA-AATGCACCGTTATGCATTTT
74497 CATTTATTTT
Statistics
Matches: 179, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
43 20 0.11
44 135 0.75
45 3 0.02
47 2 0.01
48 19 0.11
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.40
Consensus pattern (44 bp):
TGCCAAAATGCACCGTTATGCATTTTTTATTTATGGCACATTTA
Found at i:74370 original size:44 final size:44
Alignment explanation
Indices: 74275--74503 Score: 325
Period size: 44 Copynumber: 5.2 Consensus size: 44
74265 TGTATTTAAG
* *
74275 TTTCATTTGTGGCACATTTCTGCCAA-AATGTACCGTTATGCAT
1 TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
* *
74318 TTTTATTTATGGCACATTTATGCCAATAATGCACCGTTATGCAT
1 TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
* *
74362 TTTCATTTATGGCACTTTTCTACCAATAATGCACCGTTATGCAT
1 TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
* * * *
74406 TTTCATTTCTAGTACCTTTCTGCCAATAATGCACCGTTATGCAT
1 TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
* * * *
74450 TTTCATTTATGGCACCTTTCTTCCAATAATACACCATTATGCAT
1 TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
74494 TTTCATTTAT
1 TTTCATTTAT
74504 TTTAGAGCAA
Statistics
Matches: 166, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 23 0.14
44 143 0.86
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (44 bp):
TTTCATTTATGGCACATTTCTGCCAATAATGCACCGTTATGCAT
Found at i:81257 original size:43 final size:44
Alignment explanation
Indices: 81119--81287 Score: 261
Period size: 44 Copynumber: 3.9 Consensus size: 44
81109 AAATGCATCA
* *
81119 TTATGTATTTTCATTTATGGCATCTTTCTGCCAATAATGTACCG
1 TTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCG
* * * *
81163 TTATGCATTTTCATTTATGTCACTTTTCTGCCAATAATGCACCA
1 TTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCG
81207 TTATGCATTTTCATTTATGGCACCTTTCTGCC-ATAATGTACCG
1 TTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCG
*
81250 TTATGCATTTTCATTTAT-GCACATTTCTGCCAATAATG
1 TTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATG
81288 CACACATTTA
Statistics
Matches: 113, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 12 0.11
43 33 0.29
44 68 0.60
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.44
Consensus pattern (44 bp):
TTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCG
Found at i:81296 original size:31 final size:31
Alignment explanation
Indices: 81261--81321 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
81251 TATGCATTTT
81261 CATTTAT-GCACATTTCTGCCAATAATGCACA
1 CATTTATGGCACATTTCTGCC-ATAATGCACA
* *
81292 CATTTATGGCTCATTTCTGTCATAATGCAC
1 CATTTATGGCACATTTCTGCCATAATGCAC
81322 TGTTGCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (31 bp):
CATTTATGGCACATTTCTGCCATAATGCACA
Found at i:81299 original size:88 final size:88
Alignment explanation
Indices: 81110--81295 Score: 313
Period size: 88 Copynumber: 2.1 Consensus size: 88
81100 CTTTTTTCAA
* * *
81110 AATGCATCATTATGTATTTTCATTTATGGCATCTTTCTGCCAATAATGTACCGTTATGCATTTTC
1 AATGCACCATTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCGTTATGCATTTTC
*
81175 ATTTATGTCACTTTTCTGCCAAT
66 ATTTATGTCACATTTCTGCCAAT
81198 AATGCACCATTATGCATTTTCATTTATGGCACCTTTCTGCC-ATAATGTACCGTTATGCATTTTC
1 AATGCACCATTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCGTTATGCATTTTC
81262 ATTTATG-CACATTTCTGCCAAT
66 ATTTATGTCACATTTCTGCCAAT
81284 AATGCACACATT
1 AATGCAC-CATT
81296 TATGGCTCAT
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
86 21 0.23
87 34 0.37
88 38 0.41
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (88 bp):
AATGCACCATTATGCATTTTCATTTATGGCACCTTTCTGCCAATAATGTACCGTTATGCATTTTC
ATTTATGTCACATTTCTGCCAAT
Found at i:81858 original size:18 final size:18
Alignment explanation
Indices: 81835--81881 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
81825 CCTTTTTCTT
81835 AGTATCGATACCCACATC
1 AGTATCGATACCCACATC
81853 AGTATCGATACCCACATC
1 AGTATCGATACCCACATC
81871 AGTATCGATAC
1 AGTATCGATAC
81882 TAATTGCATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (18 bp):
AGTATCGATACCCACATC
Done.