Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009590.1 Hibiscus syriacus cultivar Beakdansim tig00116969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 297105
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 2 of 2
Found at i:150889 original size:176 final size:175
Alignment explanation
Indices: 150591--150939 Score: 673
Period size: 176 Copynumber: 2.0 Consensus size: 175
150581 ACCTCCACAT
150591 CATTGAGAAAAATGAACTTCCATCCCTGAAGGTGAGCTCGGACAGCTATATCCATGTCTCAACTG
1 CATTGAGAAAAATGAACTTCCATCCCTGAAGGTGAGCTCGGACAGCTATATCCATGTCTCAACTG
150656 TGTTCTCTCCAACCACCCACCTGACTCCTCCAAAGCCTTAATCCTCCAAACTCCGGCAGTCCCAT
66 TGTTCTCTCCAACCACCCACCTGACTCCTCCAAAGCCTTAATCCTCCAAACTCCGGCAGTCCCAT
150721 TAAACCCAAAG-AATTAATGAAAACACCATTCACTTGTTGCTCAC
131 TAAACCCAAAGAAATTAATGAAAACACCATTCACTTGTTGCTCAC
150765 CATTGAGAAAAATGAACTTCCATCCCTGAAGGTGAGCTCGGACAGCTATATCCATGTCCTCAACT
1 CATTGAGAAAAATGAACTTCCATCCCTGAAGGTGAGCTCGGACAGCTATATCCATGT-CTCAACT
150830 GTTGTTCTCTCCAACCACCCACCTGACTCCTCCAAAGCCTTAATCCTCCAAACTCCGGCAGTCCC
65 G-TGTTCTCTCCAACCACCCACCTGACTCCTCCAAAGCCTTAATCCTCCAAACTCCGGCAGTCCC
150895 ATTAAACCCAAAGAAATTAATGAAAACACCATTCACTTGTTGCTC
129 ATTAAACCCAAAGAAATTAATGAAAACACCATTCACTTGTTGCTC
150940 TACCTCAAAG
Statistics
Matches: 172, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
174 57 0.33
175 8 0.05
176 76 0.44
177 31 0.18
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.24
Consensus pattern (175 bp):
CATTGAGAAAAATGAACTTCCATCCCTGAAGGTGAGCTCGGACAGCTATATCCATGTCTCAACTG
TGTTCTCTCCAACCACCCACCTGACTCCTCCAAAGCCTTAATCCTCCAAACTCCGGCAGTCCCAT
TAAACCCAAAGAAATTAATGAAAACACCATTCACTTGTTGCTCAC
Found at i:153367 original size:21 final size:21
Alignment explanation
Indices: 153341--153410 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
153331 GTTTTCAGAT
*
153341 TCGCAACGCGAACTTAGACTA
1 TCGCAATGCGAACTTAGACTA
*
153362 TCGCAATGCGAA--TATGTA-AA
1 TCGCAATGCGAACTTA-G-ACTA
*
153382 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTAGACTA
153403 TCGCAATG
1 TCGCAATG
153411 TGAATATGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 2 0.05
20 15 0.38
21 22 0.55
22 1 0.03
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTAGACTA
Found at i:153386 original size:20 final size:20
Alignment explanation
Indices: 153361--153433 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
153351 AACTTAGACT
153361 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
* *
153381 ATCGCAATGCGAACT-TGGACT
1 ATCGCAATGCGAA-TATGTA-A
*
153402 ATCGCAATGTGAATATGTAA
1 ATCGCAATGCGAATATGTAA
153422 ATCGCAATGCGA
1 ATCGCAATGCGA
153434 TAGTCCAAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:153386 original size:41 final size:41
Alignment explanation
Indices: 153341--153433 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
153331 GTTTTCAGAT
*
153341 TCGCAACGCGAACTTAGACTATCGCAATGCGAATATGTAAA
1 TCGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAA
* *
153382 TCGCAATGCGAACTTGGACTATCGCAATGTGAATATGTAAA
1 TCGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAA
153423 TCGCAATGCGA
1 TCGCAATGCGA
153434 TAGTCCAAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (41 bp):
TCGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAA
Found at i:153455 original size:21 final size:19
Alignment explanation
Indices: 153429--153480 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
153419 TAAATCGCAA
*
153429 TGCGATAGTCCAAGTTCTCGT
1 TGCGATAGTCCAA-AT-TCGT
*
153450 TGCGATTTATTCCAAATTCGT
1 TGCGA--TAGTCCAAATTCGT
153471 TGCGATAGTC
1 TGCGATAGTC
153481 TAAAATCGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 4 0.15
21 14 0.54
22 1 0.04
23 7 0.27
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (19 bp):
TGCGATAGTCCAAATTCGT
Found at i:153581 original size:6 final size:6
Alignment explanation
Indices: 153572--153612 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
153562 AGACACGTAT
*
153572 TACCAT TACCAA TACCAA TACCAA TACCAA TACCAA TACCA
1 TACCAA TACCAA TACCAA TACCAA TACCAA TACCAA TACCA
153613 CGACCACGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (6 bp):
TACCAA
Found at i:153618 original size:18 final size:18
Alignment explanation
Indices: 153579--153618 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
153569 TATTACCATT
*
153579 ACCAATACCAATACCAAT
1 ACCAATACCAATACCAAG
*
153597 ACCAATACCAATACCACG
1 ACCAATACCAATACCAAG
153615 ACCA
1 ACCA
153619 CGACCACGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.38, G:0.03, T:0.12
Consensus pattern (18 bp):
ACCAATACCAATACCAAG
Found at i:166911 original size:2 final size:2
Alignment explanation
Indices: 166904--166949 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
166894 TTATCAGAAG
*
166904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
166946 AT AT
1 AT AT
166950 GTATTTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:172546 original size:30 final size:33
Alignment explanation
Indices: 172510--172585 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
172500 TTTAAATAGT
* *
172510 TATTATTTTTTA-T-ATA-AATATTTATGTAAA
1 TATTATTTTTTATTAAAATAATATTTATATAAA
*
172540 TATTATTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTTTATTAAAATAATATTTATATAAA
172573 TATTATTTATTTA
1 TATTATTT-TTTA
172586 GAATTATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
30 12 0.31
31 1 0.03
32 2 0.05
33 20 0.51
34 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (33 bp):
TATTATTTTTTATTAAAATAATATTTATATAAA
Found at i:174335 original size:21 final size:21
Alignment explanation
Indices: 174305--174352 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
174295 GCAGGGGTAC
* *
174305 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
174326 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
174347 ATGCCA
1 ATGCCA
174353 TCTCCGCAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:174378 original size:19 final size:20
Alignment explanation
Indices: 174356--174444 Score: 90
Period size: 21 Copynumber: 4.3 Consensus size: 20
174346 TATGCCATCT
*
174356 CCGCA-GTTATATTCCGAGC
1 CCGCAGGTTACATTCCGAGC
*
174375 CCGCAGGGTTACATTCCTAGC
1 CCGCA-GGTTACATTCCGAGC
* *
174396 CCGCCAGGTTACATGCCTAGC
1 CCG-CAGGTTACATTCCGAGC
* *
174417 CCGCCAGGTTACATGCCTAGC
1 CCG-CAGGTTACATTCCGAGC
174438 CCGCAGG
1 CCGCAGG
174445 GTTTTATACC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
19 5 0.08
20 4 0.06
21 53 0.83
22 2 0.03
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.20
Consensus pattern (20 bp):
CCGCAGGTTACATTCCGAGC
Found at i:174447 original size:21 final size:21
Alignment explanation
Indices: 174372--174441 Score: 115
Period size: 21 Copynumber: 3.3 Consensus size: 21
174362 TTATATTCCG
*
174372 AGCCCG-CAGGGTTACATTCCT
1 AGCCCGCCA-GGTTACATGCCT
174393 AGCCCGCCAGGTTACATGCCT
1 AGCCCGCCAGGTTACATGCCT
174414 AGCCCGCCAGGTTACATGCCT
1 AGCCCGCCAGGTTACATGCCT
174435 AGCCCGC
1 AGCCCGC
174442 AGGGTTTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
21 45 0.96
22 2 0.04
ACGTcount: A:0.19, C:0.39, G:0.24, T:0.19
Consensus pattern (21 bp):
AGCCCGCCAGGTTACATGCCT
Found at i:175034 original size:27 final size:28
Alignment explanation
Indices: 174967--175060 Score: 100
Period size: 28 Copynumber: 3.2 Consensus size: 28
174957 GATAAATGTT
* *
174967 TTTAAAATACAAATTATATTATTCGAAA
1 TTTAAAATAAAAATAATATTATTCGAAA
174995 TTTAAAATAAAAATAATATTATTC-AAA
1 TTTAAAATAAAAATAATATTATTCGAAA
*
175022 TTTAAATTTAAAATATAAATTATAGTATTCGAAA
1 TTTAAA-ATAAAA-AT-AA-TAT--TATTCGAAA
175056 TTTAA
1 TTTAA
175061 CATTAAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
27 9 0.16
28 27 0.48
29 2 0.04
30 2 0.04
31 3 0.05
33 5 0.09
34 8 0.14
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (28 bp):
TTTAAAATAAAAATAATATTATTCGAAA
Found at i:175674 original size:126 final size:126
Alignment explanation
Indices: 175449--175932 Score: 907
Period size: 126 Copynumber: 3.8 Consensus size: 126
175439 TTTAAGTTAT
*
175449 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
*** *
175514 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
175575 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
*
175640 GCGCCCCTGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
175701 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
175766 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
175827 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
175892 GCG-CCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATT
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATT
175933 ATAGAAACTA
Statistics
Matches: 351, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
125 38 0.11
126 313 0.89
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (126 bp):
TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAACCGATTGGTACTGATATATCTAGTG
Found at i:179048 original size:12 final size:13
Alignment explanation
Indices: 179015--179052 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
179005 AAATACATAA
179015 ATATATTTAATAT
1 ATATATTTAATAT
*
179028 ATTTATTTAATAT
1 ATATATTTAATAT
179041 A-ATATTTAATAT
1 ATATATTTAATAT
179053 TATTAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATATTTAATAT
Found at i:185910 original size:20 final size:21
Alignment explanation
Indices: 185885--185977 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
185875 TTTTCCCAAT
*
185885 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
185905 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
185926 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
185946 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
185967 TCGCAATGCGA
1 TCGCAATGCGA
185978 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:185930 original size:41 final size:41
Alignment explanation
Indices: 185885--185977 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
185875 TTTTCCCAAT
185885 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
185926 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
185967 TCGCAATGCGA
1 TCGCAATGCGA
185978 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:185990 original size:41 final size:41
Alignment explanation
Indices: 185904--186038 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
185894 GAATAAGTAA
* *
185904 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
185945 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
185986 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
186027 TTCGCAACGCGA
1 ATCGCAACGCGA
186039 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:185991 original size:20 final size:20
Alignment explanation
Indices: 185966--186080 Score: 106
Period size: 20 Copynumber: 5.7 Consensus size: 20
185956 AATTGGGAAA
*
185966 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
185986 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
186007 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
186027 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
186047 TTCGCAACGCAATTCTGACT
1 ATCGCAACGCGATACTGACT
*
186067 TTCGCAACGCGATA
1 ATCGCAACGCGATA
186081 ATACATAATC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.03
20 62 0.78
21 13 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:186039 original size:41 final size:41
Alignment explanation
Indices: 185963--186094 Score: 135
Period size: 41 Copynumber: 3.2 Consensus size: 41
185953 GCGAATTGGG
* * * *
185963 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATAATAC
* *
186004 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATACTGAC
1 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATAAT-AC
** *
186046 --TTTCGCAACGCA-ATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACG-AGATACTGACTTTCGCAACGCGATAATAC
*
186085 ATAATCGCAA
1 AAAATCGCAA
186095 TGCGATTTTC
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.03
40 30 0.41
41 40 0.54
42 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTTTCGCAACGCGATAATAC
Found at i:186296 original size:22 final size:22
Alignment explanation
Indices: 186268--186311 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
186258 CACTCTCTCA
186268 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
186290 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
186312 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:186581 original size:20 final size:20
Alignment explanation
Indices: 186556--186593 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
186546 CGATTCTCTC
186556 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
186576 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
186594 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:186784 original size:25 final size:24
Alignment explanation
Indices: 186730--186784 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
186720 TGTTTATTAT
* *
186730 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
186754 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
186780 TGTTT
1 TGTTT
186785 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:187934 original size:18 final size:18
Alignment explanation
Indices: 187913--187957 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
187903 TCCACTTCGG
*
187913 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
187931 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
187949 GAGCCATCA
1 GAGCCATCA
187958 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:188493 original size:19 final size:20
Alignment explanation
Indices: 188439--188505 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
188429 TAGTTTACTT
* *
188439 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
* *
188459 TTGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
188479 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
188498 TCGCAACG
1 TCGCAACG
188506 ACAAAATCGC
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
19 14 0.38
20 23 0.62
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:188513 original size:14 final size:14
Alignment explanation
Indices: 188494--188549 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
188484 ATGCGAAATG
188494 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
188508 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
188524 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
188540 AAAATCGCAA
1 AAAATCGCAA
188550 TGCGATTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 19 0.53
16 8 0.22
18 9 0.25
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:188536 original size:32 final size:33
Alignment explanation
Indices: 188478--188554 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 33
188468 GGAAATGGCT
188478 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
188511 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
188543 ATCGCAATGCGA
1 ATCGCAATGCGA
188555 TTTGTGTTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 28 0.64
33 16 0.36
ACGTcount: A:0.45, C:0.22, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:188585 original size:14 final size:14
Alignment explanation
Indices: 188566--188605 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
188556 TTGTGTTTCG
188566 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
188580 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
188594 CGTTGCGATTTT
1 CGTTGCGATTTT
188606 CATTTCGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.07, C:0.15, G:0.28, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:188640 original size:20 final size:19
Alignment explanation
Indices: 188606--188661 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
188596 TTGCGATTTT
*
188606 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
188625 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
188645 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
188662 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:190547 original size:14 final size:14
Alignment explanation
Indices: 190528--190563 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
190518 ATTGTTTAAT
190528 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
190542 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
190556 TGATTTGT
1 TGATTTGT
190564 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:190689 original size:14 final size:14
Alignment explanation
Indices: 190670--190723 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
190660 CGAAATGGCT
190670 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
190684 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
190703 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
190717 ATCGCAA
1 ATCGCAA
190724 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.31
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:190741 original size:33 final size:33
Alignment explanation
Indices: 190651--190728 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
190641 AAAACAGACT
* ***
190651 ATCGCAACGCGAAATGGCTATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
190684 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
190717 ATCGCAATGCGA
1 ATCGCAATGCGA
190729 TTTTCATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:190772 original size:20 final size:20
Alignment explanation
Indices: 190747--190804 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
190737 TCGCATTGCG
190747 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
190767 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
190787 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
190805 TCAAATGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:191912 original size:24 final size:24
Alignment explanation
Indices: 191861--191914 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
191851 GTATTCGAAA
* * *
191861 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACAGAC
*
191885 TTTGATATTGGTCAATACACAGAT
1 TTTGATATTGGTCAATACACAGAC
191909 TTTGAT
1 TTTGAT
191915 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACAGAC
Found at i:192106 original size:12 final size:12
Alignment explanation
Indices: 192089--192113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
192079 ATATAATCCT
192089 GAAGAAGAAAAA
1 GAAGAAGAAAAA
192101 GAAGAAGAAAAA
1 GAAGAAGAAAAA
192113 G
1 G
192114 TCCCCGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:194423 original size:19 final size:19
Alignment explanation
Indices: 194401--194465 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
194391 GGAAATTACT
194401 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
194420 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
194434 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
194453 ATCGCAACGCGAA
1 ATCGCAATGCGAA
194466 TTTAATTTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 9 0.25
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 21 0.58
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:194483 original size:19 final size:20
Alignment explanation
Indices: 194461--194503 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
194451 AAATCGCAAC
194461 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
194480 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
194500 GCGA
1 GCGA
194504 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:194488 original size:14 final size:14
Alignment explanation
Indices: 194489--194522 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
194479 TGCGATTTTC
194489 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
194503 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
194517 ATTTTC
1 ATTTTC
194523 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:194670 original size:14 final size:14
Alignment explanation
Indices: 194653--194679 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
194643 AACAAACCAA
194653 CTTTTACAAATCAC
1 CTTTTACAAATCAC
194667 CTTTTACAAATCA
1 CTTTTACAAATCA
194680 ATTAAACAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (14 bp):
CTTTTACAAATCAC
Found at i:195774 original size:21 final size:21
Alignment explanation
Indices: 195708--195774 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
195698 GTGAATCGGG
*
195708 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
195728 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
195750 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
195771 CTCT
1 CTCT
195775 CGAGGATGAT
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:195795 original size:41 final size:41
Alignment explanation
Indices: 195708--195829 Score: 120
Period size: 41 Copynumber: 2.9 Consensus size: 41
195698 GTGAATCGGG
* * * *
195708 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
195750 CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
* * * * *
195791 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
195830 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 36 0.54
42 27 0.40
43 4 0.06
ACGTcount: A:0.22, C:0.19, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:196317 original size:14 final size:14
Alignment explanation
Indices: 196298--196328 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
196288 CCAGATAGAA
196298 GTCGTGGCATCTTT
1 GTCGTGGCATCTTT
196312 GTCGTGGCATCTTT
1 GTCGTGGCATCTTT
196326 GTC
1 GTC
196329 ATGGTGATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.23, G:0.29, T:0.42
Consensus pattern (14 bp):
GTCGTGGCATCTTT
Found at i:197777 original size:14 final size:14
Alignment explanation
Indices: 197758--197794 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
197748 GGAAATGACT
197758 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
197772 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
197786 ATCGCAACG
1 ATCGCAACG
197795 CGAAATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.27, T:0.08
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:197809 original size:19 final size:19
Alignment explanation
Indices: 197709--197835 Score: 94
Period size: 19 Copynumber: 7.1 Consensus size: 19
197699 TCTTTTGGTT
* *
197709 GAAATGAAAATCGTAACGA
1 GAAATGAAAATCGCAACGC
*
197728 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
197748 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
197766 G--A-GAGAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
197780 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
197796 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
197815 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
197834 GA
1 GA
197836 TTTTTGTTTC
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
14 23 0.25
15 1 0.01
16 2 0.02
17 1 0.01
18 2 0.02
19 35 0.38
20 26 0.28
21 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:198444 original size:20 final size:20
Alignment explanation
Indices: 198419--198471 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
198409 GCGCTATGTA
198419 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
198439 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
198459 TATCTCGTTGCGA
1 AATCGCGTTGCGA
198472 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:198505 original size:20 final size:20
Alignment explanation
Indices: 198480--198533 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
198470 GATTTTGTAT
198480 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
198500 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
198520 TATCGCATTGCGAT
1 TATCGCATTGCGAT
198534 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:198518 original size:61 final size:61
Alignment explanation
Indices: 198420--198536 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
198410 CGCTATGTAA
* * * * *
198420 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
198481 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
198537 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:198552 original size:61 final size:61
Alignment explanation
Indices: 198420--198554 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
198410 CGCTATGTAA
* * * * * ** *
198420 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
198481 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
198543 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
198555 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:198644 original size:21 final size:21
Alignment explanation
Indices: 198604--198644 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
198594 ACTGTATACC
**
198604 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
198625 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
198645 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:210137 original size:3 final size:3
Alignment explanation
Indices: 210129--210153 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
210119 AGAACATAAA
210129 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
210154 GAGAGAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:215498 original size:15 final size:15
Alignment explanation
Indices: 215478--215525 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
215468 ATTGCCTTTT
215478 CTTTTTATTTTTTAG
1 CTTTTTATTTTTTAG
*
215493 CTTTTTATCTTTT--
1 CTTTTTATTTTTTAG
*
215506 CTTTTTGTTTTTTAG
1 CTTTTTATTTTTTAG
215521 CTTTT
1 CTTTT
215526 CTTTATGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 11 0.39
15 17 0.61
ACGTcount: A:0.08, C:0.10, G:0.06, T:0.75
Consensus pattern (15 bp):
CTTTTTATTTTTTAG
Found at i:215510 original size:20 final size:20
Alignment explanation
Indices: 215487--215529 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
215477 TCTTTTTATT
*
215487 TTTTAGCTTTTTATCTTTTC
1 TTTTAGCTTTTTAGCTTTTC
* *
215507 TTTTTGTTTTTTAGCTTTTC
1 TTTTAGCTTTTTAGCTTTTC
215527 TTT
1 TTT
215530 ATGACATTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.74
Consensus pattern (20 bp):
TTTTAGCTTTTTAGCTTTTC
Found at i:216180 original size:28 final size:28
Alignment explanation
Indices: 216117--216182 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
216107 ACTTGCAGAG
216117 CACGTTTTTCAACGTCTTTTGGTTGTGA
1 CACGTTTTTCAACGTCTTTTGGTTGTGA
* *
216145 CACATTTTTCAATGTCTTTTGGTTGTGA
1 CACGTTTTTCAACGTCTTTTGGTTGTGA
*
216173 CATGTTTTTC
1 CACGTTTTTC
216183 TATATATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.15, C:0.17, G:0.18, T:0.50
Consensus pattern (28 bp):
CACGTTTTTCAACGTCTTTTGGTTGTGA
Found at i:217217 original size:26 final size:25
Alignment explanation
Indices: 217128--217226 Score: 85
Period size: 26 Copynumber: 3.8 Consensus size: 25
217118 ATATATGGGC
* *
217128 TTTAAAAATATTTT-TTATATTAACT
1 TTTAAAAATATTTTATTTTATTTA-T
* * *
217153 TATTAAATATATTTTATTATTAAATTAA
1 T-TTAAAAATATTTTATT-TT-ATTTAT
217181 TTTAAAAATATTTTATTTTATTGTAT
1 TTTAAAAATATTTTATTTTATT-TAT
*
217207 TTTAAAAATA-TATATTTTAT
1 TTTAAAAATATTTTATTTTAT
217227 GTTAAAATAG
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
25 12 0.20
26 26 0.43
27 17 0.28
28 2 0.03
29 3 0.05
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (25 bp):
TTTAAAAATATTTTATTTTATTTAT
Found at i:217393 original size:33 final size:33
Alignment explanation
Indices: 217312--217393 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 33
217302 AATTATGATA
* *
217312 AAAATATATACTTTGAAAAGTTAAAATAATAAT
1 AAAATATATATTTTTAAAAGTTAAAATAATAAT
* * *
217345 -AAA-ATGTATTTTTAAAAGTTTAGATTAA-AAT
1 AAAATATATATTTTTAAAAG-TTAAAATAATAAT
217376 AAAATATATATTTTTAAA
1 AAAATATATATTTTTAAA
217394 TAAAAATAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
31 15 0.38
32 13 0.32
33 12 0.30
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (33 bp):
AAAATATATATTTTTAAAAGTTAAAATAATAAT
Found at i:217399 original size:20 final size:20
Alignment explanation
Indices: 217372--217415 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
217362 GTTTAGATTA
*
217372 AAATAAAATATA-TATTTTT
1 AAATAAAATAAACTATTTTT
217391 AAATAAAAATAAACTATTTTT
1 AAAT-AAAATAAACTATTTTT
217412 AAAT
1 AAAT
217416 TAAGGTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 7 0.32
21 11 0.50
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATAAAATAAACTATTTTT
Found at i:225311 original size:16 final size:16
Alignment explanation
Indices: 225290--225350 Score: 86
Period size: 16 Copynumber: 3.8 Consensus size: 16
225280 TAATAAATAA
*
225290 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
*
225306 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
* *
225322 ACAAACATAAATGAAC
1 ACGAACATAAACGAAC
225338 ACGAACATAAACG
1 ACGAACATAAACG
225351 CTGGAGACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.57, C:0.20, G:0.11, T:0.11
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:226464 original size:14 final size:14
Alignment explanation
Indices: 226447--226500 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
226437 TGAACATAAG
226447 CGAACATAACCGAA
1 CGAACATAACCGAA
*
226461 CGAATAT-A---AA
1 CGAACATAACCGAA
226471 CGAACATAACCGAA
1 CGAACATAACCGAA
226485 CGAACATAACCGAA
1 CGAACATAACCGAA
226499 CG
1 CG
226501 TTCACGAACG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.24
11 1 0.03
13 1 0.03
14 24 0.71
ACGTcount: A:0.50, C:0.26, G:0.15, T:0.09
Consensus pattern (14 bp):
CGAACATAACCGAA
Found at i:226469 original size:24 final size:24
Alignment explanation
Indices: 226438--226499 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
226428 ATAAATGAAT
*
226438 GAACATAAGCGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
*
226462 GAATATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
*
226486 GAACATAACCGAAC
1 GAACATAAACGAAC
226500 GTTCACGAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.52, C:0.24, G:0.15, T:0.10
Consensus pattern (24 bp):
GAACATAAACGAACATAACCGAAC
Found at i:231023 original size:15 final size:15
Alignment explanation
Indices: 231005--231034 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
230995 AAAACCATGT
231005 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
231020 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
231035 GAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:231041 original size:15 final size:15
Alignment explanation
Indices: 231008--231042 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
230998 ACCATGTTAG
* *
231008 ATAAAAAGGTAATAG
1 ATAAAAAGGTAAGAA
231023 ATAAAAAGGTAAGAA
1 ATAAAAAGGTAAGAA
231038 ATAAA
1 ATAAA
231043 TAAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAAAGGTAAGAA
Found at i:231181 original size:24 final size:21
Alignment explanation
Indices: 231162--231246 Score: 55
Period size: 24 Copynumber: 3.7 Consensus size: 21
231152 GAAAAAGAAG
231162 AAAAAAATATAGAAATAAAACAA
1 AAAAAAATATA-AAATAAAA-AA
231185 ATAAATAAA-ATAATAATAAAAAA
1 A-AAA-AAATATAA-AATAAAAAA
* *
231208 GTAAAAATAATATATATATAAAATA
1 --AAAAA-AATATA-AAATAAAAAA
*
231233 AAAAAAATAAAAAA
1 AAAAAAATATAAAA
231247 AGTAAATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
21 2 0.04
22 5 0.10
23 10 0.20
24 18 0.36
25 14 0.28
26 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAAATATAAAATAAAAAA
Found at i:231215 original size:25 final size:25
Alignment explanation
Indices: 231187--231244 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
231177 TAAAACAAAT
*
231187 AAATAAAATA-ATAATAAAA-AAGTAA
1 AAATAAAATATAT-ATAAAATAA-AAA
*
231212 AAATAATATATATATAAAATAAAAA
1 AAATAAAATATATATAAAATAAAAA
231237 AAATAAAA
1 AAATAAAA
231245 AAAGTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (25 bp):
AAATAAAATATATATAAAATAAAAA
Found at i:231229 original size:40 final size:39
Alignment explanation
Indices: 231185--231326 Score: 130
Period size: 40 Copynumber: 3.5 Consensus size: 39
231175 AATAAAACAA
*
231185 ATAAATAAAATAATAATAAAAAAGTAAAAATAATATATAT
1 ATAAATAAAATAA-AATAAAAAAGTAAATATAATATATAT
*
231225 ATAAAATAAAA-AAAATAAAAAAAGTAAATAT-ATATATAA
1 AT-AAATAAAATAAAAT-AAAAAAGTAAATATAATATATAT
* * *
231264 ATTAATAAAACTGATAATAAAAAA-T-AATATATTTATATAT
1 ATAAATAAAA-T-AAAATAAAAAAGTAAATATA-ATATATAT
*
231304 ATAATCTAAAAATAAAATAAAAA
1 ATAA-AT-AAAATAAAATAAAAA
231327 TATATACTAA
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
38 12 0.14
39 13 0.15
40 41 0.49
41 14 0.17
42 4 0.05
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.28
Consensus pattern (39 bp):
ATAAATAAAATAAAATAAAAAAGTAAATATAATATATAT
Found at i:231239 original size:33 final size:35
Alignment explanation
Indices: 231189--231273 Score: 102
Period size: 35 Copynumber: 2.4 Consensus size: 35
231179 AAACAAATAA
*
231189 ATAAAATAATAATAAA-AAAGTAAAAAT-AATATATAT
1 ATAAAATAATAA-AAATAAA--AAAAGTAAATATATAT
*
231225 ATAAAATAAAAAAAATAAAAAAAGTAAATATATAT
1 ATAAAATAATAAAAATAAAAAAAGTAAATATATAT
*
231260 ATAAATTAATAAAA
1 ATAAAATAATAAAA
231274 CTGATAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
34 5 0.12
35 24 0.56
36 14 0.33
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (35 bp):
ATAAAATAATAAAAATAAAAAAAGTAAATATATAT
Found at i:231241 original size:9 final size:9
Alignment explanation
Indices: 231121--231252 Score: 61
Period size: 9 Copynumber: 13.4 Consensus size: 9
231111 AAATAGTAAG
*
231121 TAAAATAAA
1 TAAAAAAAA
*
231130 TATAAAAAA
1 TAAAAAAAA
231139 TAAAGAAAAA
1 TAAA-AAAAA
*
231149 GAAGAAAAAGA
1 TAA-AAAAA-A
231160 -AGAAAAAAA
1 TA-AAAAAAA
* *
231169 T-ATAGAAA
1 TAAAAAAAA
*
231177 TAAAACAAA
1 TAAAAAAAA
231186 TAAATAAAATAA
1 T-AA-AAAA-AA
231198 TAATAAAAAA
1 TAA-AAAAAA
231208 GTAAAAATAATA
1 -TAAAAA-AA-A
*
231220 TATATATAAAA
1 TA-A-AAAAAA
231231 TAAAAAAAA
1 TAAAAAAAA
*
231240 TAAAAAAAG
1 TAAAAAAAA
231249 TAAA
1 TAAA
231253 TATATATATA
Statistics
Matches: 97, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
8 6 0.06
9 34 0.35
10 25 0.26
11 23 0.24
12 7 0.07
13 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:231293 original size:38 final size:34
Alignment explanation
Indices: 231210--231345 Score: 105
Period size: 35 Copynumber: 3.8 Consensus size: 34
231200 ATAAAAAAGT
231210 AAAAATAATATATATATAAAATAAAAAAAATAAA
1 AAAAATAATATATATATAAAATAAAAAAAATAAA
* * *
231244 AAAAGTAAATATATATATAAATTAATAAAACTGATAATA
1 AAAAAT-AATATATATATAAAATAA-AAAA--AATAA-A
* * *
231283 AAAAATAATATATTTATATATATAATCTAAAAATAAA
1 AAAAATAATATATATATA-AAATAA--AAAAAATAAA
* * *
231320 ATAAA-AATATATA-CTAAAGTAAAAAA
1 AAAAATAATATATATATAAAATAAAAAA
231346 GAAAATACAT
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
32 3 0.04
34 9 0.11
35 19 0.24
36 11 0.14
37 5 0.06
38 19 0.24
39 10 0.13
40 3 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (34 bp):
AAAAATAATATATATATAAAATAAAAAAAATAAA
Found at i:231376 original size:22 final size:21
Alignment explanation
Indices: 231322--231382 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 21
231312 AAAATAAAAT
231322 AAAAATATATAC-T-AAAGTAA
1 AAAAATAT-TACATAAAAGTAA
* *
231342 AAAAGAAAATACATAAAATGTAA
1 AAAA-ATATTACATAAAA-GTAA
231365 AAAAATATTACATGAAAA
1 AAAAATATTACAT-AAAA
231383 AAAAGAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 7 0.22
21 3 0.09
22 10 0.31
23 12 0.38
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (21 bp):
AAAAATATTACATAAAAGTAA
Found at i:231750 original size:34 final size:34
Alignment explanation
Indices: 231707--231775 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
231697 GAATCCTAGC
231707 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
231741 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
231775 A
1 A
231776 GTAGGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:232544 original size:106 final size:104
Alignment explanation
Indices: 232237--233130 Score: 868
Period size: 105 Copynumber: 8.5 Consensus size: 104
232227 AATATTGTTC
* * * * *
232237 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAAAT-TGAAAATGTTTGTTGACA
** * * * *
232302 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
232343 CGAGTCTAATATCCTTCGCTGTGAAGATGAAATTGACTCTG-AA-CG-AAAT-CTTGTTGACAAT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAAC
*
232404 CAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
*
232443 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-TTG-AAAATGTTTGTTGACA
*
232508 ACCAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * ** * *
232549 CGAGTGGCACGATATCCTCCG-TCGTGGAGTT-AAAATCGCGGATGAAACTGAAAAGTTGTTCGT
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGC-TCTGAAATTGAAAA--TGTTTGT
232612 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
59 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
232658 CGGGTAGCACGATATCC-TCTG-TCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTGT
1 CGAGT--C-CAATATCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATT--GAAAATGTTTGT
* *
232721 TGACAACCAGTCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
59 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * **
232767 CGAGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTCCGAAA-T-----TGCTTGTCGACAGT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAAC
* * * *
232826 CAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
66 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * * *
232865 TGGGTCCAATATCCTTCTCTGTGAAGTTGAAATTTGCCCTGAAACTAGGAAAT-TATTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-TTGAAAATGT-TTGTTGACA
232929 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* ** *
232970 GGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-GTTGTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATG-T-TTGTTGACA
** * * * *
233034 GGCAGCGGTCCCTTCGTCGTGAAGTTGAATTTGCGTTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
233075 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-GTTTG
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTG
233131 GCTTCGAGCT
Statistics
Matches: 662, Mismatches: 97, Indels: 61
0.81 0.12 0.07
Matches are distributed among these distances:
98 82 0.12
100 81 0.12
101 5 0.01
102 1 0.00
103 4 0.01
104 6 0.01
105 184 0.28
106 114 0.17
107 8 0.01
108 11 0.02
109 157 0.24
110 5 0.01
111 4 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (104 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAAC
CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:232770 original size:218 final size:205
Alignment explanation
Indices: 232237--233121 Score: 748
Period size: 206 Copynumber: 4.2 Consensus size: 205
232227 AATATTGTTC
* * * *
232237 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
** * * * *
232302 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTCGAGTCTAATATCCTTCGCTGTGA
66 ACCAG-CGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGCTGTGA
* * ** * *
232367 AGATGAAATTGACTCTGAACGAAATCTTGTTGACAATCAGTCGTCCCTTCGTTGTGAAGTTGAAC
130 AGATAAAATCGACGATGAACGAAATCTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAAC
232432 TTGTGTTGTCT
195 TTGTGTTGTCT
* * * *
232443 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
*
232508 ACCAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGC-ACGATATCCTCCG-T
66 ACCAGC-GTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGT--CTA--ATATCCTCCGCT
* * *
232571 CGTGGAGTTAAAATCG-CGGATGAAACTGAAAAGTTGTTCGTTGACAACCAGCCGTCCCTTCGTT
126 -GTGAAGATAAAATCGAC-GATG-AAC-G-AAA--TCTT-GTTGACAACCAGCCGTCCCTTCGTT
232635 GTGAAGTTGAACTTGTGTTGTCT
183 GTGAAGTTGAACTTGTGTTGTCT
* * *
232658 CGGGTAGCACGATATCC-TCTGTCGTG-G-AGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTG
1 CGAGT--C-CAATATCCTTC-G-C-TGCGAAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTG
* *
232720 TTGACAACCAGTCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCG
60 TTGACAACCAG-CGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCG
* * * * * * * ** * *
232785 CTGTGAAGTTGAGATTG--GCT--CCGAAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGA
124 CTGTGAAGATAAAATCGACGATGAACGAAA-T-CTTGTTGACAACCAGCCGTCCCTTCGTTGTGA
* *
232846 AGTTGAGCTTGTGCTGTCT
187 AGTTGAACTTGTGTTGTCT
* * * * * * * * * *
232865 TGGGTCCAATATCCTTCTCTGTGAAGTTGAAATTTGCCCTGAAACTAGGAAATT-ATTGTTGACA
1 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
* * * * **
232929 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCATTGTGA
66 ACCAG-CGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGCTGTGA
* * * * ** * * ** * *
232994 AGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAGGCAGCGGTCCCTTCGTCGTGAAGT
130 AGATAAAATCGACGATG-AA-CGA-AA--TCTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGT
* *
233059 TGAATTTGCGTTGTCT
190 TGAACTTGTGTTGTCT
* * * *
233075 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
1 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGGAATTG
233122 AGAAGTTTGG
Statistics
Matches: 560, Mismatches: 85, Indels: 64
0.79 0.12 0.09
Matches are distributed among these distances:
202 2 0.00
203 81 0.14
204 31 0.06
205 6 0.01
206 95 0.17
207 48 0.09
208 8 0.01
209 25 0.04
210 85 0.15
211 3 0.01
212 3 0.01
213 2 0.00
214 3 0.01
215 70 0.12
216 2 0.00
217 4 0.01
218 87 0.16
219 3 0.01
220 2 0.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (205 bp):
CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
ACCAGCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGCTGTGAA
GATAAAATCGACGATGAACGAAATCTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACT
TGTGTTGTCT
Found at i:233653 original size:37 final size:37
Alignment explanation
Indices: 233584--233657 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
233574 CAAAGATATT
** * *
233584 TTTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
1 TTTTGTTTCAAGAAAAACGGTCTCAAGAGAGACAAAA
* *
233621 TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
1 TTTTGTTTCAAGAAAAACGGTCTCAAGAGAGACAAAA
233658 CTTAGTTCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (37 bp):
TTTTGTTTCAAGAAAAACGGTCTCAAGAGAGACAAAA
Found at i:233869 original size:65 final size:65
Alignment explanation
Indices: 233765--233930 Score: 296
Period size: 65 Copynumber: 2.6 Consensus size: 65
233755 GACAAAATTT
*
233765 TGTTTCAAGAGAAACTGTTTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
233830 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
233895 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
233931 TTGTTTCGAG
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 96 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:233936 original size:102 final size:102
Alignment explanation
Indices: 233830--234287 Score: 781
Period size: 102 Copynumber: 4.5 Consensus size: 102
233820 TCAATGTTTA
* *
233830 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
233895 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* *
233932 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATTTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
233997 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
234034 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
234099 TGTTTCAAGAGAAACTGTCTCAATGGAGACGAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* *
234136 TGTTTCATGGGAAACTATCTCAAGAGAGACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
234201 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* * * **
234238 TGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAGTTTGTTTCAAGGGAAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAA
234288 CTGTCTCAAG
Statistics
Matches: 334, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 334 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
Found at i:233946 original size:37 final size:37
Alignment explanation
Indices: 233895--234305 Score: 258
Period size: 37 Copynumber: 11.9 Consensus size: 37
233885 TCAATGTTTA
* *
233895 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
233932 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * * * *
233968 CATTTCAAGGGAAATTTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
233996 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
234034 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
234070 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
234098 ATGTTTCAAGAGAAACTGTCTCAATG-GAGACGAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
* * *
234136 TGTTTCATGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
234172 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * *
234200 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
234238 TGTTTAAAGGGAAACTGTCTCAAGAGAGAC-AAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
234274 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
234306 TAGTGAGCAC
Statistics
Matches: 278, Mismatches: 59, Indels: 74
0.68 0.14 0.18
Matches are distributed among these distances:
27 3 0.01
28 5 0.02
29 40 0.14
30 9 0.03
32 2 0.01
33 2 0.01
34 2 0.01
35 7 0.03
36 81 0.29
37 116 0.42
38 11 0.04
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:234020 original size:167 final size:169
Alignment explanation
Indices: 233730--234047 Score: 523
Period size: 167 Copynumber: 1.9 Consensus size: 169
233720 AAGATGATGC
* *
233730 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTGTTTCAAGAGAGAC
1 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
*
233795 GAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
*
233860 GAAA-TTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
131 AAAATTTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
* *
233898 TTCAAGAG-AAACTGTCTCAAGGGAGACAAAATTTTGTTTCGAGGGAAACTATCTCAAGAGAGAC
1 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
* * *
233962 AAAATTCATTTCAAGGGAAATTTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAC
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
**
234027 AAAATTTTGTTTCAAGGGAAA
131 AAAATTTCATTTCAAGGGAAA
234048 CTATCTCAAG
Statistics
Matches: 138, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
167 116 0.84
168 22 0.16
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (169 bp):
TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
AAAATTTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
Found at i:234284 original size:36 final size:36
Alignment explanation
Indices: 234201--234305 Score: 156
Period size: 36 Copynumber: 2.9 Consensus size: 36
234191 TCAATGTTTA
* * * *
234201 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAG-ACAAAGTT
*
234238 TGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
234274 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
234306 TAGTGAGCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
36 37 0.60
37 25 0.40
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
Found at i:235189 original size:22 final size:22
Alignment explanation
Indices: 235164--235214 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
235154 TTGTGTTTGG
235164 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
235186 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
235208 TCAAAGG
1 TCAAAGG
235215 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:235923 original size:23 final size:23
Alignment explanation
Indices: 235870--235924 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
235860 TGATTTTTGC
235870 TCTTTTTTCCTTTTGTTCTTGTT
1 TCTTTTTTCCTTTTGTTCTTGTT
*
235893 TCTCTTTTT-CTTTGTGTT-TTTTT
1 TCT-TTTTTCCTTT-TGTTCTTGTT
235916 TGCTTTTTT
1 T-CTTTTTT
235925 GCTTCTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 17 0.61
24 11 0.39
ACGTcount: A:0.00, C:0.15, G:0.09, T:0.76
Consensus pattern (23 bp):
TCTTTTTTCCTTTTGTTCTTGTT
Found at i:235945 original size:15 final size:17
Alignment explanation
Indices: 235913--235946 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
235903 TTTGTGTTTT
235913 TTTTGCTTTTTTGCTTC
1 TTTTGCTTTTTTGCTTC
235930 TTTT-CTTTTTTG-TTC
1 TTTTGCTTTTTTGCTTC
235945 TT
1 TT
235947 GATTGGATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 8 0.47
17 4 0.24
ACGTcount: A:0.00, C:0.15, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTTGCTTTTTTGCTTC
Found at i:238906 original size:15 final size:15
Alignment explanation
Indices: 238888--238917 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
238878 AAAACCATGT
238888 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
238903 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
238918 GAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:238924 original size:15 final size:15
Alignment explanation
Indices: 238891--238925 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
238881 ACCATGTTAG
* *
238891 ATAAAAAGGTAATAG
1 ATAAAAAGGTAAGAA
238906 ATAAAAAGGTAAGAA
1 ATAAAAAGGTAAGAA
238921 ATAAA
1 ATAAA
238926 TAAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAAAGGTAAGAA
Found at i:239048 original size:8 final size:9
Alignment explanation
Indices: 239024--239049 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
239014 ATAAAAAATA
239024 AAGAAAAAG
1 AAGAAAAAG
239033 AAGAAAAAG
1 AAGAAAAAG
239042 AAGAAAAA
1 AAGAAAAA
239050 AATATAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAGAAAAAG
Found at i:239085 original size:24 final size:24
Alignment explanation
Indices: 239048--239126 Score: 72
Period size: 26 Copynumber: 3.2 Consensus size: 24
239038 AAAGAAGAAA
*
239048 AAAATATAGAAATAAAACAAATAAAT
1 AAAATATA-TAATAAAA-AAATAAAT
*
239074 AAAATA-ATAATAAAAAAGTAAA-
1 AAAATATATAATAAAAAAATAAAT
*
239096 AATAATATATATATAAAATAAAAAAAT
1 AA-AATATATA-ATAAAA-AAATAAAT
239123 AAAA
1 AAAA
239127 AAGTAAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
22 2 0.05
23 10 0.23
24 10 0.23
25 7 0.16
26 13 0.30
27 2 0.05
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.22
Consensus pattern (24 bp):
AAAATATATAATAAAAAAATAAAT
Found at i:239098 original size:25 final size:24
Alignment explanation
Indices: 239059--239126 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
239049 AAATATAGAA
* *
239059 ATAAAACAAATAAATAAAATA-AT
1 ATAAAATAAAAAAATAAAATATAT
*
239082 AATAAAA-AAGTAAAAATAATATATAT
1 -ATAAAATAA--AAAAATAAAATATAT
239108 ATAAAATAAAAAAATAAAA
1 ATAAAATAAAAAAATAAAA
239127 AAGTAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.05
24 15 0.41
25 16 0.43
26 4 0.11
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (24 bp):
ATAAAATAAAAAAATAAAATATAT
Found at i:239099 original size:38 final size:38
Alignment explanation
Indices: 239057--239143 Score: 90
Period size: 38 Copynumber: 2.3 Consensus size: 38
239047 AAAAATATAG
239057 AAATAA-A-ACAAAT-AAATAAAATAATAATAAAAAAGTAA
1 AAATAATATACAAATAAAAT-AAA-AA-AATAAAAAAGTAA
* *
239095 AAATAATATATATATAAAATAAAAAAATAAAAAAGTAA
1 AAATAATATACAAATAAAATAAAAAAATAAAAAAGTAA
*
239133 ATATATATATA
1 AAATA-ATATA
239144 TATATAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 23 0.55
39 8 0.19
40 7 0.17
41 4 0.10
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.24
Consensus pattern (38 bp):
AAATAATATACAAATAAAATAAAAAAATAAAAAAGTAA
Found at i:239115 original size:41 final size:42
Alignment explanation
Indices: 239070--239209 Score: 141
Period size: 45 Copynumber: 3.4 Consensus size: 42
239060 TAAAACAAAT
239070 AAATAAAATAATAATAAAAAAGTAAAAATA-ATATATATATA
1 AAATAAAATAATAATAAAAAAGTAAAAATATATATATATATA
*
239111 AAAT-AAA-AA-AATAAAAAAGTAAATATATATATATATATA
1 AAATAAAATAATAATAAAAAAGTAAAAATATATATATATATA
* * * *
239150 ATTAATAAAACTGATAATAAAAAA-TAATATATTTATATATAATCTA
1 A--AATAAAA-TAATAATAAAAAAGTAA-AAATATATATAT-ATATA
239196 AAA-AAAATAA-AATA
1 AAATAAAATAATAATA
239210 TATACTAAAG
Statistics
Matches: 85, Mismatches: 5, Indels: 18
0.79 0.05 0.17
Matches are distributed among these distances:
38 17 0.20
39 14 0.16
40 3 0.04
41 11 0.13
42 5 0.06
43 4 0.05
44 6 0.07
45 20 0.24
46 5 0.06
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.29
Consensus pattern (42 bp):
AAATAAAATAATAATAAAAAAGTAAAAATATATATATATATA
Found at i:239128 original size:31 final size:33
Alignment explanation
Indices: 239077--239143 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
239067 AATAAATAAA
*
239077 ATAATAATAAAAAAGTAAAAA-T-AATATATAT
1 ATAATAATAAAAAAATAAAAAGTAAATATATAT
239108 ATAA-AATAAAAAAATAAAAAAGTAAATATATAT
1 ATAATAATAAAAAAAT-AAAAAGTAAATATATAT
239141 ATA
1 ATA
239144 TATATAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 10 0.31
31 9 0.28
32 1 0.03
33 12 0.38
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (33 bp):
ATAATAATAAAAAAATAAAAAGTAAATATATAT
Found at i:239180 original size:39 final size:35
Alignment explanation
Indices: 239093--239207 Score: 97
Period size: 39 Copynumber: 3.0 Consensus size: 35
239083 ATAAAAAAGT
239093 AAAAATAATATATATATA-AAATAAAAAAATAAAA
1 AAAAATAATATATATATATAAATAAAAAAATAAAA
* *
239127 AAGTAAATATATATATATATATAATTAATAAAACTGATAATA
1 AA--AAATA-ATATATATATATAAATAA-AAAA---ATAAAA
*
239169 AAAAATAATATATTTATATATAATCTAAAAAAAATAAAA
1 AAAAATAATATA--TATATATAA-AT-AAAAAAATAAAA
239208 TATATACTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
34 2 0.03
36 5 0.08
37 11 0.17
38 5 0.08
39 14 0.22
40 5 0.08
41 9 0.14
42 12 0.18
43 2 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (35 bp):
AAAAATAATATATATATATAAATAAAAAAATAAAA
Found at i:239245 original size:23 final size:23
Alignment explanation
Indices: 239197--239249 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
239187 TATAATCTAA
* *
239197 AAAAAATAAAATATATACTAAAGT
1 AAAAAAGAAAATACATAC-AAAGT
239221 AAAAAAGAAAATACATA-AAATGT
1 AAAAAAGAAAATACATACAAA-GT
239244 AAAAAA
1 AAAAAA
239250 TATTACATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 3 0.12
23 8 0.31
24 15 0.58
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.19
Consensus pattern (23 bp):
AAAAAAGAAAATACATACAAAGT
Found at i:239630 original size:34 final size:34
Alignment explanation
Indices: 239587--239655 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
239577 GAATCCTAGC
239587 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
239621 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
239655 A
1 A
239656 GTAGGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:241927 original size:14 final size:13
Alignment explanation
Indices: 241906--241935 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
241896 CAATATTTCA
241906 TGAACATATATTC
1 TGAACATATATTC
241919 TGAAGCATATATTC
1 TGAA-CATATATTC
241933 TGA
1 TGA
241936 TTCCGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (13 bp):
TGAACATATATTC
Found at i:245979 original size:32 final size:30
Alignment explanation
Indices: 245908--246013 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 30
245898 ACTGTTTTAG
* *
245908 CATTGAACTTT-T-AAATATTA-CAAATAAT
1 CATTGAA-TTTATCAAATATTATAAAATGAT
* *
245936 AATTAAATTTATCAAATTATTATAAAATGAT
1 CATTGAATTTATCAAA-TATTATAAAATGAT
*
245967 CATT-ATATTTTATCAAATGTTATAAAATGAT
1 CATTGA-A-TTTATCAAATATTATAAAATGAT
245998 CATTGAATTTATCAAA
1 CATTGAATTTATCAAA
246014 CTTTTACACC
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
27 3 0.05
28 6 0.09
29 3 0.05
30 15 0.23
31 28 0.43
32 10 0.15
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.42
Consensus pattern (30 bp):
CATTGAATTTATCAAATATTATAAAATGAT
Found at i:245993 original size:31 final size:31
Alignment explanation
Indices: 245941--246013 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
245931 ATAATAATTA
245941 AATTTATCAAATTATTATAAAATGATCATT-
1 AATTTATCAAATTATTATAAAATGATCATTG
*
245971 ATATTTTATCAAA-TGTTATAAAATGATCATTG
1 A-A-TTTATCAAATTATTATAAAATGATCATTG
246003 AATTTATCAAA
1 AATTTATCAAA
246014 CTTTTACACC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 10 0.26
31 19 0.49
32 10 0.26
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (31 bp):
AATTTATCAAATTATTATAAAATGATCATTG
Found at i:269012 original size:3 final size:3
Alignment explanation
Indices: 269004--269108 Score: 171
Period size: 3 Copynumber: 36.0 Consensus size: 3
268994 TTAATATATT
* *
269004 TAA TAA TAA TAG TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
269051 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
269098 T-A TAA TAA TAA
1 TAA TAA TAA TAA
269109 ATGGATAAAA
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
2 6 0.06
3 89 0.94
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:269673 original size:113 final size:113
Alignment explanation
Indices: 269423--270199 Score: 1346
Period size: 113 Copynumber: 6.9 Consensus size: 113
269413 AGAGTCATTC
* * * *
269423 AAAAGGTTGAATAAATTCTTCTTATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
269488 TATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
269535 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
269600 TATGAACTTTCCCTGGCAATGTTGATCCATCAAATGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
269648 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
269713 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
269761 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
269826 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
269874 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
269939 TATGAACTTTCTCTGGAAAAGATGATCCATAAAATGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
269987 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
270052 TATGAACTTTTTCTGGAAAA-ATGATCCATCAAGTGATG-ATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
270098 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
270163 TATGAAC-TTCTCTGAAAAAGCTAACCCATCAAATGAT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGAT
270200 AGATTTGAAT
Statistics
Matches: 633, Mismatches: 30, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
110 10 0.02
111 93 0.15
112 84 0.13
113 446 0.70
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
Found at i:271084 original size:82 final size:84
Alignment explanation
Indices: 270940--271172 Score: 411
Period size: 83 Copynumber: 2.8 Consensus size: 84
270930 ACTGAATCAT
*
270940 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCTAAACTCAATG
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCTAAATTCAATG
*
271004 ATTG-TTCTGTCCAACCAG
66 ATTGATTATGTCCAACCAG
*
271022 ATCAGATAACTC-AAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAAATTCAATG
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCTAAATTCAATG
271086 ATTGATTATGTCCAACCAG
66 ATTGATTATGTCCAACCAG
271105 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAAATTCATCTTCTAAATTCAATG
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCTAAATTCAATG
271169 ATTG
66 ATTG
271173 GACTAATATA
Statistics
Matches: 144, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
81 26 0.18
82 39 0.27
83 56 0.39
84 23 0.16
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (84 bp):
ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCTAAATTCAATG
ATTGATTATGTCCAACCAG
Found at i:271951 original size:16 final size:17
Alignment explanation
Indices: 271911--271954 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
271901 CAATAGAAAG
*
271911 AATAAATTGAATTTCCA
1 AATAAATTGAATCTCCA
271928 AA-ATAATTGAATCT-CA
1 AATA-AATTGAATCTCCA
271944 AATAAATTGAA
1 AATAAATTGAA
271955 CTTGAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (17 bp):
AATAAATTGAATCTCCA
Found at i:272462 original size:16 final size:16
Alignment explanation
Indices: 272441--272474 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
272431 CTTCCAATTA
272441 GGCATCCATTTCCCAC
1 GGCATCCATTTCCCAC
272457 GGCATCCATTTCCCAC
1 GGCATCCATTTCCCAC
272473 GG
1 GG
272475 AAATCTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.41, G:0.18, T:0.24
Consensus pattern (16 bp):
GGCATCCATTTCCCAC
Found at i:282874 original size:13 final size:15
Alignment explanation
Indices: 282852--282888 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
282842 TTTGACAGAA
282852 AAAT-AAATAC-TG-
1 AAATAAAATACTTGC
282864 AAATAAAATACTTGC
1 AAATAAAATACTTGC
282879 AAATAAAATA
1 AAATAAAATA
282889 AAACATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.18
13 6 0.27
14 2 0.09
15 10 0.45
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (15 bp):
AAATAAAATACTTGC
Found at i:283621 original size:23 final size:24
Alignment explanation
Indices: 283584--283629 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
283574 TTCGATATTG
283584 AAAAAATATTAAAATAATTTATTTT
1 AAAAAATATTAAAATAA-TTATTTT
*
283609 AAAAAATA-T-AAATTATTATTT
1 AAAAAATATTAAAATAATTATTT
283630 ATCATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 1 0.05
25 8 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAAATATTAAAATAATTATTTT
Found at i:285081 original size:3 final size:3
Alignment explanation
Indices: 285073--285179 Score: 162
Period size: 3 Copynumber: 35.7 Consensus size: 3
285063 TTTAATATAT
* *
285073 TAA TAA TAA TAG TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
285121 TAT TAA TAA TATA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
285167 T-A TAA TAA TAA TA
1 TAA TAA TAA TAA TA
285180 TGGATAAAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
2 2 0.02
3 89 0.95
4 3 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:285778 original size:14 final size:14
Alignment explanation
Indices: 285759--285788 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
285749 TATAGGTAAA
285759 TGATTTATTAAATG
1 TGATTTATTAAATG
285773 TGATTTATTAAATG
1 TGATTTATTAAATG
285787 TG
1 TG
285789 CTGCTGTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (14 bp):
TGATTTATTAAATG
Found at i:289999 original size:2 final size:2
Alignment explanation
Indices: 289987--290024 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
289977 TTAGATAAAT
289987 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
290025 GTCATTTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:292410 original size:21 final size:21
Alignment explanation
Indices: 292369--292409 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
292359 ACTTTTTTTT
292369 TTGAAAGTTTAGGTACTAAAA
1 TTGAAAGTTTAGGTACTAAAA
*
292390 TTGATAGTTTAGG-ACTAAAA
1 TTGAAAGTTTAGGTACTAAAA
292410 ACGTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (21 bp):
TTGAAAGTTTAGGTACTAAAA
Found at i:293505 original size:18 final size:18
Alignment explanation
Indices: 293482--293555 Score: 88
Period size: 18 Copynumber: 4.4 Consensus size: 18
293472 ACCGGTCACA
293482 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
293500 ACCCGACCCGACCCGTTT
1 ACCCGACCCGACCCGTTG
*
293518 ACCTGACCC-A----TTG
1 ACCCGACCCGACCCGTTG
293531 ACCCGACCCGACCCG-TG
1 ACCCGACCCGACCCGTTG
293548 ACCCGACC
1 ACCCGACC
293556 GTTGACCGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
13 10 0.21
14 1 0.02
17 11 0.23
18 25 0.53
ACGTcount: A:0.19, C:0.50, G:0.19, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:293562 original size:7 final size:7
Alignment explanation
Indices: 293552--293585 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
293542 CCCGTGACCC
293552 GACCGTT
1 GACCGTT
293559 GACCGTT
1 GACCGTT
293566 GACCCGTT
1 GA-CCGTT
*
293574 GACCATT
1 GACCGTT
293581 GACCG
1 GACCG
293586 GAGTTGACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.18, C:0.32, G:0.26, T:0.24
Consensus pattern (7 bp):
GACCGTT
Found at i:293574 original size:15 final size:15
Alignment explanation
Indices: 293554--293584 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
293544 CGTGACCCGA
*
293554 CCGTTGACCGTTGAC
1 CCGTTGACCATTGAC
293569 CCGTTGACCATTGAC
1 CCGTTGACCATTGAC
293584 C
1 C
293585 GGAGTTGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (15 bp):
CCGTTGACCATTGAC
Found at i:294884 original size:17 final size:17
Alignment explanation
Indices: 294859--294892 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
294849 TCGAAAGGAC
*
294859 TGAAGTAAATGATAAGA
1 TGAAGTAAATAATAAGA
*
294876 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
294893 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (17 bp):
TGAAGTAAATAATAAGA
Done.