Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2451160
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 11
Found at i:796103 original size:26 final size:26
Alignment explanation
Indices: 796067--796119 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
796057 TAAACTACGA
796067 GAATAGATGGCATGTTTGTCGATTGT
1 GAATAGATGGCATGTTTGTCGATTGT
796093 GAATAGATGGCATGTTTGTCGATTGT
1 GAATAGATGGCATGTTTGTCGATTGT
796119 G
1 G
796120 TCCACCTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.08, G:0.32, T:0.38
Consensus pattern (26 bp):
GAATAGATGGCATGTTTGTCGATTGT
Found at i:802012 original size:20 final size:20
Alignment explanation
Indices: 801987--802100 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
801977 AATTGGGAAA
*
801987 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
802007 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
802027 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
802048 ATCGCAACGAGATATTGACT
1 ATCGCAACGCGATACTGACT
* *
802068 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
802088 TTCGCAACGCGAT
1 ATCGCAACGCGAT
802101 TTACATAGCG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
19 2 0.03
20 63 0.79
21 13 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:802049 original size:61 final size:61
Alignment explanation
Indices: 801984--802100 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
801974 GCGAATTGGG
* * * * *
801984 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * * *
802045 AAAATCGCAACGAGATATTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
802101 TTACATAGCG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:802713 original size:19 final size:19
Alignment explanation
Indices: 802691--802870 Score: 111
Period size: 20 Copynumber: 10.1 Consensus size: 19
802681 GAAACAAAAA
*
802691 TCGCTTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
802710 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
802729 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
* *
802749 TCGCGTTGTGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
802765 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
802782 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
802796 TCTCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
802810 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
802829 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
802849 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
802869 TC
1 TC
802871 AACCAAAAGA
Statistics
Matches: 131, Mismatches: 17, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
14 33 0.25
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 40 0.31
20 49 0.37
21 1 0.01
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:802772 original size:39 final size:39
Alignment explanation
Indices: 802696--802772 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
802686 AAAAATCGCT
* **
802696 TTGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGG
*
802735 TTGCGATTTTCATTTCGCGTTGTGATTGTCT-GGTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATT-TCTAGGTCGCG
802773 ATAGTCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.09, C:0.18, G:0.26, T:0.47
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGG
Found at i:802802 original size:14 final size:14
Alignment explanation
Indices: 802785--802821 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
802775 AGTCATTTCG
802785 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
802799 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
802813 CGTTGCGAT
1 CGTTGCGAT
802822 AGTCATTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.08, C:0.27, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:802807 original size:33 final size:33
Alignment explanation
Indices: 802734--802807 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
802724 TTATTTCGCG
** * * *
802734 GTTGCGATTTTCATTTCGCGTTGTGATTGTCTG
1 GTTGCGATAGTCATTTCGCGTTGCGATTCTCTC
*
802767 GTCGCGATAGTCATTTCGCGTTGCGATTCTCTC
1 GTTGCGATAGTCATTTCGCGTTGCGATTCTCTC
802800 GTTGCGAT
1 GTTGCGAT
802808 TCTCTCGTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.42
Consensus pattern (33 bp):
GTTGCGATAGTCATTTCGCGTTGCGATTCTCTC
Found at i:802824 original size:47 final size:48
Alignment explanation
Indices: 802752--802845 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 48
802742 TTTCATTTCG
* * *
802752 CGTTGTGATTGTCTGGTCGCGATAGTCATTT-CGCGTTGCGATTCTCT
1 CGTTGCGATTCTCTCGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
*
802799 CGTTGCGATTCTCTCGTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 CGTTGCGATTCTCTCGTCGCGATAGTCATTTCCGCGTTGCGATTCTC
802846 ATTATCTCGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 27 0.64
48 15 0.36
ACGTcount: A:0.11, C:0.24, G:0.26, T:0.39
Consensus pattern (48 bp):
CGTTGCGATTCTCTCGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
Found at i:804954 original size:21 final size:21
Alignment explanation
Indices: 804930--804996 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
804920 TCATTCCTCG
804930 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
804951 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
804972 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
804993 AGAG
1 AGAG
804997 CCTGATTCAT
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:804954 original size:42 final size:42
Alignment explanation
Indices: 804878--804996 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
804868 GACTCGCCTG
* * * * * * *
804878 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
804920 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
804962 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
804997 CCTGATTCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:806366 original size:14 final size:14
Alignment explanation
Indices: 806347--806382 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
806337 ATTGTTTAAT
806347 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
806361 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
806375 TGATTTGT
1 TGATTTGT
806383 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:806533 original size:19 final size:19
Alignment explanation
Indices: 806509--806567 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
806499 GAAATTAGCG
806509 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
806528 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
806542 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
806561 TTGCGAT
1 TTGCGAT
806568 AGTAATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:806533 original size:33 final size:34
Alignment explanation
Indices: 806490--806566 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 34
806480 AAAAGTACTA
*
806490 TCGCAATGCGAAAT-TAGCGTTGCGATTTTCATT
1 TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
* **
806523 TCGCATTGCG-ATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
806556 TCGCATTGCGA
1 TCGCATTGCGA
806567 TAGTAATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.05
33 36 0.95
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (34 bp):
TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
Found at i:807357 original size:24 final size:24
Alignment explanation
Indices: 807330--807376 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
807320 CAAAATCCGT
*
807330 GTATTAACCAATATCAAAGTTCGG
1 GTATTAACCAAGATCAAAGTTCGG
* *
807354 GTATTGACCAAGATCAAATTTCG
1 GTATTAACCAAGATCAAAGTTCG
807377 AATACTGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (24 bp):
GTATTAACCAAGATCAAAGTTCGG
Found at i:808481 original size:20 final size:20
Alignment explanation
Indices: 808428--808475 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
808418 ATTCATTTGA
808428 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
808448 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
808468 CTATCGCA
1 CTATCGCA
808476 TTGCGATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:808622 original size:14 final size:14
Alignment explanation
Indices: 808603--808639 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
808593 CATCAATTAA
808603 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
808617 ACAAATCATCTTTT
1 ACAAATCAACATTT
808631 ACAAATCAA
1 ACAAATCAA
808640 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:810530 original size:20 final size:20
Alignment explanation
Indices: 810507--810560 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
810497 GAAACTTAAA
810507 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
810527 ATCGCAACGCAAAAATGGCT
1 ATCGCAACGCGAAAATGACT
*
810547 ATCGCAATGCGAAA
1 ATCGCAACGCGAAA
810561 TGAAAATCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:810662 original size:20 final size:20
Alignment explanation
Indices: 810628--810702 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
810618 TTGCGATTTT
*
810628 CATTT-CGCATTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
810647 CATTTCCGCGTTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
*
810667 CATTTCCGCGTTGCGATAGT
1 CATTTCCGCGTTGCGATAGC
* *
810687 CATTTTCGTGTTGCGA
1 CATTTCCGCGTTGCGA
810703 AAGTAAACTA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 5 0.10
20 46 0.90
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (20 bp):
CATTTCCGCGTTGCGATAGC
Found at i:811210 original size:18 final size:18
Alignment explanation
Indices: 811184--811228 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
811174 GTCGATCAGA
*
811184 TGATGGCTCTGGGTGAAG
1 TGATGGCTCTGGGCGAAG
* *
811202 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAAG
811220 TGATGGCTC
1 TGATGGCTC
811229 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.42, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAAG
Found at i:812573 original size:20 final size:20
Alignment explanation
Indices: 812548--812585 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
812538 AATAGTTTCT
812548 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
812568 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
812586 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:812858 original size:22 final size:22
Alignment explanation
Indices: 812831--812874 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
812821 GATGGAGATA
812831 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
812853 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
812875 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:813088 original size:20 final size:20
Alignment explanation
Indices: 813062--813175 Score: 122
Period size: 20 Copynumber: 5.7 Consensus size: 20
813052 GATTATGTAT
813062 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
813082 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
813102 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* ** *
813122 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
* *
813143 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
813163 TATCGCATTGCGA
1 TATCGCGTTGCGA
813176 TTTTCCCAAT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
19 3 0.04
20 63 0.79
21 12 0.15
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:813179 original size:41 final size:41
Alignment explanation
Indices: 813042--813177 Score: 159
Period size: 41 Copynumber: 3.3 Consensus size: 41
813032 CACTTTGAAA
*
813042 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* * * *
813083 ATCGCGTTGCGA--AAGTCAGTATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * * * *
813123 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
813164 ATCGCATTGCGATT
1 ATCGCATTGCGATT
813178 TTCCCAATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.04
40 31 0.40
41 42 0.54
42 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:813194 original size:21 final size:21
Alignment explanation
Indices: 813165--813257 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
813155 ATAGTCAGTA
813165 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
813186 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
813206 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
813227 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
813247 TCGCATTGCGA
1 TCGCATTGCGA
813258 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:813195 original size:41 final size:41
Alignment explanation
Indices: 813104--813238 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
813094 AAAGTCAGTA
* * * ** *
813104 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
813144 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
813186 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
813227 TCGCGTTGCGAT
1 TCGCGTTGCGAT
813239 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:813239 original size:41 final size:41
Alignment explanation
Indices: 813165--813257 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
813155 ATAGTCAGTA
813165 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
813206 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
813247 TCGCATTGCGA
1 TCGCATTGCGA
813258 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:817491 original size:20 final size:20
Alignment explanation
Indices: 817463--817500 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
817453 AACTAAATTT
817463 AAGGATCATAAATTTAACTA
1 AAGGATCATAAATTTAACTA
*
817483 AAGGGTCATAAATTTAAC
1 AAGGATCATAAATTTAAC
817501 ACTGAGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
AAGGATCATAAATTTAACTA
Found at i:819981 original size:20 final size:20
Alignment explanation
Indices: 819958--820056 Score: 94
Period size: 20 Copynumber: 4.8 Consensus size: 20
819948 ATTCGCGTTG
819958 CATTTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATTTTC
* *
819978 CATTTCGCGTTGCGATAGTCTA
1 CATTTCGCGTTGCGAT--TTTC
*
820000 CA-AT-GTCGTTGCGATTTTC
1 CATTTCG-CGTTGCGATTTTC
**
820019 CAAATTTCAAGTTGCGATTTTC
1 C--ATTTCGCGTTGCGATTTTC
820041 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
820057 AGTCTACAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.05
20 30 0.48
21 11 0.18
22 18 0.29
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.40
Consensus pattern (20 bp):
CATTTCGCGTTGCGATTTTC
Found at i:820035 original size:63 final size:63
Alignment explanation
Indices: 819966--820087 Score: 235
Period size: 63 Copynumber: 1.9 Consensus size: 63
819956 TGCATTTCGC
819966 GTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCCAAATTTCAA
1 GTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCCAAATTTCAA
*
820029 GTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTTCAAATT
1 GTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCCAAATT
820088 CGTTGCGATA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (63 bp):
GTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCCAAATTTCAA
Found at i:820092 original size:19 final size:19
Alignment explanation
Indices: 820005--820133 Score: 64
Period size: 22 Copynumber: 6.3 Consensus size: 19
819995 GTCTACAATG
*
820005 TCGTTGCGATTTTCCAAATT
1 TCGTTGCGATTTTACAAA-T
* *
820025 TCAAGTTGCGATTTT-CCATT
1 TC--GTTGCGATTTTACAAAT
*
820045 TCGCGTTGCGATAGTCTAC-AAT
1 T--CGTTGCGAT--TTTACAAAT
*
820067 GTCGTTGCGATTTTTCAAAT
1 -TCGTTGCGATTTTACAAAT
* **
820087 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTACAAAT
*
820108 GTCGTTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTACAAAT
820128 TCGTTG
1 TCGTTG
820134 TGATAGTTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 25
0.68 0.11 0.20
Matches are distributed among these distances:
19 19 0.23
20 20 0.24
21 16 0.19
22 26 0.31
23 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.41
Consensus pattern (19 bp):
TCGTTGCGATTTTACAAAT
Found at i:820098 original size:40 final size:41
Alignment explanation
Indices: 820029--820140 Score: 156
Period size: 41 Copynumber: 2.7 Consensus size: 41
820019 CAAATTTCAA
*
820029 GTTGCGATTTTCC-ATTTCGCGTTGCGATAGTCTACA-ATGTC
1 GTTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGATGTC
* *
820070 GTTGCGATTTTTCAAATTCGTTGCGATAGTCTACAGTTGTC
1 GTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGATGTC
*
820111 GTTGCGATTTTCCAAATTCGTTGTGATAGT
1 GTTGCGATTTTCCAAATTCGTTGCGATAGT
820141 TAAAAAAAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 17 0.27
41 44 0.69
42 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (41 bp):
GTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGATGTC
Found at i:820229 original size:6 final size:6
Alignment explanation
Indices: 820218--820243 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
820208 ACACGTATGG
820218 CCACGA CCACGA CCACGA CCACGA CC
1 CCACGA CCACGA CCACGA CCACGA CC
820244 CGAGACGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.54, G:0.15, T:0.00
Consensus pattern (6 bp):
CCACGA
Found at i:820876 original size:20 final size:20
Alignment explanation
Indices: 820851--821047 Score: 160
Period size: 20 Copynumber: 9.7 Consensus size: 20
820841 ACAACGAATT
*
820851 TGGAAAATCGCAACGCTAAC
1 TGGAAAATCGCAACGCGAAC
820871 TGGAAAATCGCAACGCGAAC
1 TGGAAAATCGCAACGCGAAC
**
820891 TGGAAAATCGCAACGCGATT
1 TGGAAAATCGCAACGCGAAC
** * *
820911 TTCAACTATCGCAACGCAAAC
1 TGGAA-AATCGCAACGCGAAC
* * **
820932 TGAAAAATCGCAACGTGATT
1 TGGAAAATCGCAACGCGAAC
** * *
820952 TTCAACTATCGCAACGCGAAA
1 TGGAA-AATCGCAACGCGAAC
*
820973 TGGAAAATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGAAC
* **
820993 TGGAAAATCGCAACTCGATT
1 TGGAAAATCGCAACGCGAAC
** * *
821013 TTCAACTATCGCAACGCGAAA
1 TGGAA-AATCGCAACGCGAAC
821034 TGGAAAATCGCAAC
1 TGGAAAATCGCAAC
821048 TCGATTTTCA
Statistics
Matches: 137, Mismatches: 37, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
20 95 0.69
21 42 0.31
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (20 bp):
TGGAAAATCGCAACGCGAAC
Found at i:820939 original size:41 final size:41
Alignment explanation
Indices: 820877--820990 Score: 185
Period size: 41 Copynumber: 2.8 Consensus size: 41
820867 TAACTGGAAA
*
820877 ATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCAAACTGGAAAATCGCAACGCGATTTTCAACT
* *
820918 ATCGCAACGCAAACTGAAAAATCGCAACGTGATTTTCAACT
1 ATCGCAACGCAAACTGGAAAATCGCAACGCGATTTTCAACT
820959 ATCGCAACGCGAAA-TGGAAAATCGCAACGCGA
1 ATCGCAACGC-AAACTGGAAAATCGCAACGCGA
820991 AATGGAAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
41 64 0.96
42 3 0.04
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (41 bp):
ATCGCAACGCAAACTGGAAAATCGCAACGCGATTTTCAACT
Found at i:820983 original size:61 final size:62
Alignment explanation
Indices: 820851--821097 Score: 250
Period size: 61 Copynumber: 4.0 Consensus size: 62
820841 ACAACGAATT
* * ** ** * **
820851 TGGAAAATCGCAACGC-TAACTGGAAAATCGCAACGCGAACTGGAA-AATCGCAACGCGATT
1 TGGAAAATCGCAACGCGAAACTGAAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
** * *
820911 TTCAACTATCGCAACGC-AAACTGAAAAATCGCAACGTGATTTTCAACTATCGCAACGCGAAA
1 TGGAA-AATCGCAACGCGAAACTGAAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
* *
820973 TGGAAAATCGCAACGCGAAA-TGGAAAATCGCAACTCGATTTTCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGAAACTGAAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
* *** * ** *
821034 TGGAAAATCGCAACTCGATTTTCAACTATCGCAACGCGATTTTCAATTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGAAACTGAAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
821096 TG
1 TG
821098 CAACGCGAAT
Statistics
Matches: 155, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
60 3 0.02
61 97 0.63
62 55 0.35
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (62 bp):
TGGAAAATCGCAACGCGAAACTGAAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
Found at i:821024 original size:41 final size:41
Alignment explanation
Indices: 820979--821072 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
820969 GAAATGGAAA
820979 ATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACT
1 ATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACT
821020 ATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACT
1 ATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACT
821061 ATCGCAACGCGA
1 ATCGCAACGCGA
821073 TTTTCAATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACT
Found at i:821041 original size:102 final size:102
Alignment explanation
Indices: 820857--821072 Score: 355
Period size: 102 Copynumber: 2.1 Consensus size: 102
820847 AATTTGGAAA
* * *
820857 ATCGCAACGCTAACTGGAAAATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACTATCG
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCG
820922 CAACGCAAACTGAAAAATCGCAACGT-GATTTTCAACT
66 CAACGCAAACTGAAAAATCGCAAC-TCGATTTTCAACT
*
820959 ATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACTCGATTTTCAACTATCG
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCG
*
821024 CAACGCGAAA-TGGAAAATCGCAACTCGATTTTCAACT
66 CAACGC-AAACTGAAAAATCGCAACTCGATTTTCAACT
821061 ATCGCAACGCGA
1 ATCGCAACGCGA
821073 TTTTCAATTA
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
101 1 0.01
102 103 0.96
103 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (102 bp):
ATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCG
CAACGCAAACTGAAAAATCGCAACTCGATTTTCAACT
Found at i:829731 original size:32 final size:32
Alignment explanation
Indices: 829695--829793 Score: 117
Period size: 32 Copynumber: 3.1 Consensus size: 32
829685 CGAACCAAAT
* * *
829695 TTTAACCCGAGCCGAAAGCAACCTGAATCGAA
1 TTTAACCCGAACCAAAAGCAACCAGAATCGAA
* *
829727 TTTAACCCGAACCAAAAGCAACCCGAATTGAA
1 TTTAACCCGAACCAAAAGCAACCAGAATCGAA
** * *
829759 ACTAACCCGAACCAAAAGTAACCAGAAACGAA
1 TTTAACCCGAACCAAAAGCAACCAGAATCGAA
829791 TTT
1 TTT
829794 TAATATGAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.43, C:0.27, G:0.14, T:0.15
Consensus pattern (32 bp):
TTTAACCCGAACCAAAAGCAACCAGAATCGAA
Found at i:829749 original size:16 final size:16
Alignment explanation
Indices: 829730--829781 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
829720 AATCGAATTT
829730 AACCCGAACCAAAAGC
1 AACCCGAACCAAAAGC
***
829746 AACCCGAATTGAAA-C
1 AACCCGAACCAAAAGC
*
829761 TAACCCGAACCAAAAGT
1 -AACCCGAACCAAAAGC
829778 AACC
1 AACC
829782 AGAAACGAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.48, C:0.33, G:0.12, T:0.08
Consensus pattern (16 bp):
AACCCGAACCAAAAGC
Found at i:829825 original size:16 final size:16
Alignment explanation
Indices: 829804--829839 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
829794 TAATATGAAT
*
829804 TGAAAGAAACCCGAAC
1 TGAAAGAAACACGAAC
*
829820 TGAAAGAAACATGAAC
1 TGAAAGAAACACGAAC
829836 TGAA
1 TGAA
829840 TTTAACCTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (16 bp):
TGAAAGAAACACGAAC
Found at i:833914 original size:51 final size:51
Alignment explanation
Indices: 833859--833969 Score: 177
Period size: 51 Copynumber: 2.2 Consensus size: 51
833849 ATCTTACTTG
*
833859 TAATATAAAACGACTAAAACAAAGGAGATAATATTAGATTCATAATAAAAA
1 TAATATAAAACAACTAAAACAAAGGAGATAATATTAGATTCATAATAAAAA
* * * *
833910 TAATAGAAAACAATTAAAACAAAGTAGATAATATTATATTCATAATAAAAA
1 TAATATAAAACAACTAAAACAAAGGAGATAATATTAGATTCATAATAAAAA
833961 TAATATAAA
1 TAATATAAA
833970 GTTTACTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.60, C:0.06, G:0.07, T:0.26
Consensus pattern (51 bp):
TAATATAAAACAACTAAAACAAAGGAGATAATATTAGATTCATAATAAAAA
Found at i:835928 original size:21 final size:21
Alignment explanation
Indices: 835902--835946 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
835892 GATTTCTGGG
* *
835902 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
835923 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
835944 CAA
1 CAA
835947 ACGACAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:836550 original size:18 final size:18
Alignment explanation
Indices: 836527--836561 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
836517 CTAGGAGATT
836527 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
836545 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
836562 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:836647 original size:21 final size:22
Alignment explanation
Indices: 836618--836661 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
836608 GTTGTATGAT
836618 AGAAAATTAT-GAAGTTATATG
1 AGAAAATTATAGAAGTTATATG
* *
836639 AGAAGATTATAGGAGTTATATG
1 AGAAAATTATAGAAGTTATATG
836661 A
1 A
836662 AATTGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (22 bp):
AGAAAATTATAGAAGTTATATG
Found at i:837724 original size:149 final size:149
Alignment explanation
Indices: 837543--837846 Score: 554
Period size: 149 Copynumber: 2.0 Consensus size: 149
837533 GAGTCGAGGG
837543 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
* * *
837608 ACTTGATCCCTAGCATATGTATATGATTCTTAAATAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
837673 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
* *
837692 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
*
837757 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTTCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
837822 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
837841 TCTACG
1 TCTACG
837847 GGGCACTTCG
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:837869 original size:23 final size:23
Alignment explanation
Indices: 837825--837869 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
837815 ATCATTATAT
*
837825 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
837848 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
837870 AGTTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:841062 original size:21 final size:21
Alignment explanation
Indices: 841036--841080 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
841026 GATTTCTGGG
* *
841036 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
841057 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
841078 CAA
1 CAA
841081 ACGACAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:841776 original size:21 final size:22
Alignment explanation
Indices: 841747--841790 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
841737 GTTGTATGAT
841747 AGAAAATTAT-GAAGTTATATG
1 AGAAAATTATAGAAGTTATATG
* *
841768 AGAAGATTATAGGAGTTATATG
1 AGAAAATTATAGAAGTTATATG
841790 A
1 A
841791 AATTGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (22 bp):
AGAAAATTATAGAAGTTATATG
Found at i:842858 original size:149 final size:149
Alignment explanation
Indices: 842677--842980 Score: 563
Period size: 149 Copynumber: 2.0 Consensus size: 149
842667 GAGTCGAGGG
842677 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
* *
842742 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
842807 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
* *
842826 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
*
842891 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTTCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
842956 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
842975 TCTACG
1 TCTACG
842981 GGGCACTTCG
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:843003 original size:23 final size:23
Alignment explanation
Indices: 842959--843003 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
842949 ATCATTATAT
*
842959 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
842982 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
843004 AGCTATGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:844272 original size:57 final size:59
Alignment explanation
Indices: 844201--844334 Score: 175
Period size: 57 Copynumber: 2.3 Consensus size: 59
844191 CTTTTTAAAA
* *** *
844201 TATTTACCAAAATAGCACCCATTTCT-AATTAATTATCATAATAGCA-CAAAACCGAAT
1 TATTTACCAGAATAGCACCCAAAACTGAATTAATTATCAGAATAGCACCAAAACCGAAT
* *
844258 TATTTACCAGAATAGCA-CCAAAACTGAATTATTTATCAGAATAGCACCAAAACTGAAT
1 TATTTACCAGAATAGCACCCAAAACTGAATTAATTATCAGAATAGCACCAAAACCGAAT
*
844316 TATTTACCAGAATAACACC
1 TATTTACCAGAATAGCACC
844335 GGTCAACAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
56 5 0.08
57 34 0.52
58 26 0.39
59 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (59 bp):
TATTTACCAGAATAGCACCCAAAACTGAATTAATTATCAGAATAGCACCAAAACCGAAT
Found at i:844287 original size:29 final size:29
Alignment explanation
Indices: 844240--844334 Score: 156
Period size: 29 Copynumber: 3.3 Consensus size: 29
844230 TAATTATCAT
*
844240 AATAGCA-CAAAACCGAATTATTTACCAG
1 AATAGCACCAAAACTGAATTATTTACCAG
*
844268 AATAGCACCAAAACTGAATTATTTATCAG
1 AATAGCACCAAAACTGAATTATTTACCAG
844297 AATAGCACCAAAACTGAATTATTTACCAG
1 AATAGCACCAAAACTGAATTATTTACCAG
*
844326 AATAACACC
1 AATAGCACC
844335 GGTCAACAGT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 7 0.11
29 55 0.89
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.23
Consensus pattern (29 bp):
AATAGCACCAAAACTGAATTATTTACCAG
Found at i:844361 original size:13 final size:13
Alignment explanation
Indices: 844343--844371 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
844333 CCGGTCAACA
844343 GTCAACGGGTCGG
1 GTCAACGGGTCGG
844356 GTCAACGGGTCGG
1 GTCAACGGGTCGG
844369 GTC
1 GTC
844372 GTGACCGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.24, G:0.45, T:0.17
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:845349 original size:96 final size:96
Alignment explanation
Indices: 845185--845358 Score: 339
Period size: 96 Copynumber: 1.8 Consensus size: 96
845175 GTATCTAACC
*
845185 GATCCGAACTGAAAATTAACCGATCCGATAATTACCTGACTCGATACGCTACCCGATCTGATTTA
1 GATCCGAACTGAAAATTAACCGATCCGATAATTACCTGACTCGATACCCTACCCGATCTGATTTA
845250 CCGTATACCCGAAATCAAACGATCCGATATT
66 CCGTATACCCGAAATCAAACGATCCGATATT
845281 GATCCGAACTGAAAATTAACCGATCCGATAATTACCTGACTCGATACCCTACCCGATCTGATTTA
1 GATCCGAACTGAAAATTAACCGATCCGATAATTACCTGACTCGATACCCTACCCGATCTGATTTA
845346 CCGTATACCCGAA
66 CCGTATACCCGAA
845359 CTAGATCCGA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (96 bp):
GATCCGAACTGAAAATTAACCGATCCGATAATTACCTGACTCGATACCCTACCCGATCTGATTTA
CCGTATACCCGAAATCAAACGATCCGATATT
Found at i:850059 original size:18 final size:19
Alignment explanation
Indices: 850019--850062 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
850009 TTGGTTCACG
*
850019 GAATATAAGATTATCAGTAA
1 GAATAAAAGATTATCAG-AA
850039 GAATAAAAGATTATCAG-A
1 GAATAAAAGATTATCAGAA
850057 GAATAA
1 GAATAA
850063 GATTATAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.25
Consensus pattern (19 bp):
GAATAAAAGATTATCAGAA
Found at i:868510 original size:60 final size:60
Alignment explanation
Indices: 868398--868510 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 60
868388 TAGTCGATGT
* * * **
868398 CCATTTTGTAACTTTTAATAGCCGAGGGACTCAATAAAATAACACCTTATAGTTAGGAGA
1 CCATTTTATAACTTTTAATAGCCGAGGAACTCAATAAAACAACACCAAATAGTTAGGAGA
* * * *
868458 CCATTTTATAACTTTTAATAGTCGATGAACTTAGTAAAACAACACCAAATAGT
1 CCATTTTATAACTTTTAATAGCCGAGGAACTCAATAAAACAACACCAAATAGT
868511 CATAGACCAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 44 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (60 bp):
CCATTTTATAACTTTTAATAGCCGAGGAACTCAATAAAACAACACCAAATAGTTAGGAGA
Found at i:870785 original size:20 final size:20
Alignment explanation
Indices: 870762--870890 Score: 136
Period size: 20 Copynumber: 6.3 Consensus size: 20
870752 GTTTCCAGAT
*
870762 TCGCAACGCGATTTTGACTA
1 TCGCAACGCGATTCTGACTA
***
870782 TCGCAACGCGAAAAT-ACATAA
1 TCGCAACGCGATTCTGAC-T-A
870803 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
**
870823 TCGCAACGCGATAAT-ACATAA
1 TCGCAACGCGATTCTGAC-T-A
870844 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
* *
870864 TCGCAACGTGATTCTGACTG
1 TCGCAACGCGATTCTGACTA
870884 TCGCAAC
1 TCGCAAC
870891 ACTGAATTTC
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
19 4 0.04
20 54 0.59
21 29 0.32
22 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTA
Found at i:870807 original size:21 final size:21
Alignment explanation
Indices: 870781--870855 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
870771 GATTTTGACT
*
870781 ATCGCAACGCGAAAATACATA
1 ATCGCAACGCGATAATACATA
**
870802 ATCGCAACGCGATTCTGAC-T-
1 ATCGCAACGCGATAAT-ACATA
870822 ATCGCAACGCGATAATACATA
1 ATCGCAACGCGATAATACATA
870843 ATCGCAACGCGAT
1 ATCGCAACGCGAT
870856 TCTGACTATC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
19 2 0.04
20 15 0.33
21 27 0.59
22 2 0.04
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (21 bp):
ATCGCAACGCGATAATACATA
Found at i:870813 original size:41 final size:41
Alignment explanation
Indices: 870762--870871 Score: 202
Period size: 41 Copynumber: 2.7 Consensus size: 41
870752 GTTTCCAGAT
*
870762 TCGCAACGCGATTTTGACTATCGCAACGCGAAAATACATAA
1 TCGCAACGCGATTCTGACTATCGCAACGCGAAAATACATAA
*
870803 TCGCAACGCGATTCTGACTATCGCAACGCGATAATACATAA
1 TCGCAACGCGATTCTGACTATCGCAACGCGAAAATACATAA
870844 TCGCAACGCGATTCTGACTATCGCAACG
1 TCGCAACGCGATTCTGACTATCGCAACG
870872 TGATTCTGAC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (41 bp):
TCGCAACGCGATTCTGACTATCGCAACGCGAAAATACATAA
Found at i:871758 original size:24 final size:24
Alignment explanation
Indices: 871700--871746 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
871690 AGTCGGTATT
* *
871700 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATCTTAGTCAATACC
871724 CGAACTTTGATCTTAGTCAATAC
1 CGAACTTTGATCTTAGTCAATAC
871747 TTGGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (24 bp):
CGAACTTTGATCTTAGTCAATACC
Found at i:874021 original size:12 final size:12
Alignment explanation
Indices: 874006--874045 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
873996 CAAGAAAAAG
874006 ACAATCAAAATC
1 ACAATCAAAATC
874018 ACAATCAAAATC
1 ACAATCAAAATC
* **
874030 AAAATCCCAATC
1 ACAATCAAAATC
874042 ACAA
1 ACAA
874046 CCGGCTTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.57, C:0.28, G:0.00, T:0.15
Consensus pattern (12 bp):
ACAATCAAAATC
Found at i:874031 original size:18 final size:18
Alignment explanation
Indices: 874008--874042 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
873998 AGAAAAAGAC
874008 AATCAAAATCACAATCAA
1 AATCAAAATCACAATCAA
*
874026 AATCAAAATCCCAATCA
1 AATCAAAATCACAATCA
874043 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (18 bp):
AATCAAAATCACAATCAA
Found at i:874354 original size:140 final size:140
Alignment explanation
Indices: 874102--874371 Score: 504
Period size: 140 Copynumber: 1.9 Consensus size: 140
874092 AAACGTTGTA
874102 TTATGTGTAAACTTTTAACATTTTCAATTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAATTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
874167 TGATTTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAATGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
874232 TATGTGTATT
131 TATGTGTATT
* *
874242 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAATTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAATTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
874307 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
874372 CGCAACGCGA
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 126 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAATTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:874367 original size:20 final size:20
Alignment explanation
Indices: 874342--874630 Score: 225
Period size: 20 Copynumber: 15.7 Consensus size: 20
874332 TTACACATTC
*
874342 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
874362 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
874382 ATTTGATTATTGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* *
874401 A----A-AATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
874416 ATTTGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
*
874435 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
874450 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
874470 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
* *
874490 ATTTGACTATCGCAATGAGA
1 ATTTGACTATCGCAACGCGA
874510 A----A--ATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
874524 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
874544 ATTTGATTATCGCAACG-GA
1 ATTTGACTATCGCAACGCGA
*
874563 TATTTGACTATCGCAACGAGA
1 -ATTTGACTATCGCAACGCGA
* *
874584 A----A--ATCGCAAAGCGT
1 ATTTGACTATCGCAACGCGA
*
874598 ATTAGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
874618 A-TTGACTTTCGCA
1 ATTTGACTATCGCA
874631 TTGCGATTTT
Statistics
Matches: 213, Mismatches: 30, Indels: 53
0.72 0.10 0.18
Matches are distributed among these distances:
14 38 0.18
15 6 0.03
16 2 0.01
18 2 0.01
19 18 0.08
20 145 0.68
21 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:874418 original size:34 final size:34
Alignment explanation
Indices: 874370--874615 Score: 228
Period size: 34 Copynumber: 6.9 Consensus size: 34
874360 GAATTTGACT
* * *
874370 ATCGCAACGCGAATTTGATTATTGCAACTCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCAAAA
*
874404 ATCGCAACGTGAATTTGACTATCGCAACGCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCAAAA
*
874438 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATT
1 ATCGCAACGCGAATTTGACTATCGCAACGC-AA----A-A
* * *
874478 ATCGCAACGGGTATTTGACTATCGCAATG-AGAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCA-AAA
*
874512 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATT
1 ATCGCAACGCGAATTTGACTATCGCAACGC-AA----A-A
874552 ATCGCAACG-GATATTTGACTATCGCAACG-AGAAA
1 ATCGCAACGCGA-ATTTGACTATCGCAACGCA-AAA
* * *
874586 ATCGCAAAGCGTATTAGACTATCGCAACGC
1 ATCGCAACGCGAATTTGACTATCGCAACGC
874616 GAATTGACTT
Statistics
Matches: 176, Mismatches: 18, Indels: 35
0.77 0.08 0.15
Matches are distributed among these distances:
34 109 0.62
35 6 0.03
36 1 0.01
38 2 0.01
39 6 0.03
40 52 0.30
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (34 bp):
ATCGCAACGCGAATTTGACTATCGCAACGCAAAA
Found at i:874418 original size:54 final size:54
Alignment explanation
Indices: 874350--874559 Score: 221
Period size: 54 Copynumber: 3.9 Consensus size: 54
874340 TCATTTGAAT
*
874350 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATTGCAACTCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACTCAAAA
* * * * * ** **
874404 ATCGCAACGTGAATTTGACTATCGCAACGCAAAAATCGCA--A-CGCGAATTTGACT
1 ATCGCAACGCGAATTTGACTATCGCAACGC-GAATTTG-ATTATCGC-AACTCAAAA
* * * * *
874458 ATCGCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATCGCAA-TGAGAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACTCA-AAA
874512 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAAC
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAAC
874560 GGATATTTGA
Statistics
Matches: 123, Mismatches: 25, Indels: 15
0.75 0.15 0.09
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 108 0.88
55 7 0.06
56 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (54 bp):
ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACTCAAAA
Found at i:874485 original size:74 final size:73
Alignment explanation
Indices: 874404--874620 Score: 346
Period size: 74 Copynumber: 2.9 Consensus size: 73
874394 CAACTCAAAA
874404 ATCGCAACGTGAATTTGACTATCGCAACGCA-AAAATCGCAACGCGAATTTGACTATCGCAACGC
1 ATCGCAACG-GAATTTGACTATCGCAACG-AGAAAATCGCAACGCGAATTTGACTATCGCAACGC
874468 GAATTTGATT
64 GAATTTGATT
* *
874478 ATCGCAACGGGTATTTGACTATCGCAATGAGAAAATCGCAACGCGAATTTGACTATCGCAACGCG
1 ATCGCAAC-GGAATTTGACTATCGCAACGAGAAAATCGCAACGCGAATTTGACTATCGCAACGCG
874543 AATTTGATT
65 AATTTGATT
* * *
874552 ATCGCAACGGATATTTGACTATCGCAACGAGAAAATCGCAAAGCGTATTAGACTATCGCAACGCG
1 ATCGCAACGGA-ATTTGACTATCGCAACGAGAAAATCGCAACGCGAATTTGACTATCGCAACGCG
874617 AATT
65 AATT
874621 GACTTTCGCA
Statistics
Matches: 133, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
73 3 0.02
74 129 0.97
75 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (73 bp):
ATCGCAACGGAATTTGACTATCGCAACGAGAAAATCGCAACGCGAATTTGACTATCGCAACGCGA
ATTTGATT
Found at i:874804 original size:14 final size:14
Alignment explanation
Indices: 874762--874837 Score: 107
Period size: 14 Copynumber: 5.3 Consensus size: 14
874752 CACAAATAAG
*
874762 AATTATTTACACATC
1 AATT-TTTACAAATC
**
874777 AATATTAAACAAATC
1 AAT-TTTTACAAATC
874792 AATTTTTACAAATC
1 AATTTTTACAAATC
874806 AATTTTTACAAATC
1 AATTTTTACAAATC
874820 AATTTTTACAAATC
1 AATTTTTACAAATC
874834 AATT
1 AATT
874838 AAACAAGCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
14 41 0.75
15 13 0.24
16 1 0.02
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:876281 original size:42 final size:42
Alignment explanation
Indices: 876222--876340 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
876212 ATGAATCGGG
* * *
876222 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAGAGGC
** *
876264 CTCTTGAACGGTGGGAGGGGA-CTCTTGAGGGATGATAGAGGC
1 CTCTTGAACGGTGGGA-GGGACCTCTTGAACGATGACAGAGGC
* *
876306 CTCTTGAACGATAGGAGAGG-CCTCTTGAACGATGA
1 CTCTTGAACGGTGGGAG-GGACCTCTTGAACGATGA
876341 ATGGTGAGTC
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.02
42 59 0.92
43 4 0.06
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.22
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAGAGGC
Found at i:876282 original size:21 final size:21
Alignment explanation
Indices: 876222--876336 Score: 88
Period size: 21 Copynumber: 5.5 Consensus size: 21
876212 ATGAATCGGG
* *
876222 CTCTTGAATGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGGGC
* * **
876243 CTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGGC
*
876264 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGC
* ** *
876285 CTCTTG-AGGGATGATAGAGGC
1 CTCTTGAACGG-TGGGAGGGGC
* * *
876306 CTCTTGAACGATAGGAGAGGC
1 CTCTTGAACGGTGGGAGGGGC
876327 CTCTTGAACG
1 CTCTTGAACG
876337 ATGAATGGTG
Statistics
Matches: 71, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.04
21 66 0.93
22 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.22
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGC
Found at i:876904 original size:19 final size:20
Alignment explanation
Indices: 876880--876918 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
876870 GCAACGGGAT
*
876880 AATCGCAATGCGAAA-TAAA
1 AATCGCAACGCGAAACTAAA
876899 AATCGCAACGCGAAACTAAA
1 AATCGCAACGCGAAACTAAA
876919 TTTGCGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAAACTAAA
Found at i:877018 original size:20 final size:20
Alignment explanation
Indices: 876990--877076 Score: 97
Period size: 20 Copynumber: 4.4 Consensus size: 20
876980 GCGATTATCC
*
876990 CGTTGCGATAGTCAACTTCG
1 CGTTGCGATAGTCAATTTCG
*
877010 CGCTGCGATAGTC-ATTTCCG
1 CGTTGCGATAGTCAATTT-CG
*
877030 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAATTTCG
* *
877050 CGTTGCGAT-TTAAATTTCG
1 CGTTGCGATAGTCAATTTCG
*
877069 TGTTGCGA
1 CGTTGCGA
877077 CTATTCTTCT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
19 17 0.30
20 37 0.65
21 3 0.05
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTTCG
Found at i:878993 original size:20 final size:20
Alignment explanation
Indices: 878970--879086 Score: 68
Period size: 20 Copynumber: 6.2 Consensus size: 20
878960 GAAACTTAAA
878970 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
** **
878990 ATCGCAATGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
* *
879010 ATCAC-A-ACG-AGAT-A--
1 ATCGCAACACGAAAATGACT
* * **
879024 ATCGCAACGC-CAAATGAAA
1 ATCGCAACACGAAAATGACT
879043 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
* **
879063 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
879083 ATCG
1 ATCG
879087 TTGCGATTTT
Statistics
Matches: 72, Mismatches: 18, Indels: 14
0.69 0.17 0.13
Matches are distributed among these distances:
14 4 0.06
15 1 0.01
16 5 0.07
17 3 0.04
18 2 0.03
19 10 0.14
20 47 0.65
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:879474 original size:22 final size:22
Alignment explanation
Indices: 879447--879497 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
879437 GATGGAGATA
879447 GATGGATTTCGTCGGAGATGGG
1 GATGGATTTCGTCGGAGATGGG
*
879469 GATGGATTTCGTCTGAGATGGG
1 GATGGATTTCGTCGGAGATGGG
*
879491 GACGGAT
1 GATGGAT
879498 GTCACCGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.10, G:0.43, T:0.27
Consensus pattern (22 bp):
GATGGATTTCGTCGGAGATGGG
Found at i:879672 original size:21 final size:21
Alignment explanation
Indices: 879642--879757 Score: 96
Period size: 21 Copynumber: 5.6 Consensus size: 21
879632 CGCTTTGAAA
*
879642 ATCGCATTGCGATTTTGTATT
1 ATCGCGTTGCGATTTTGTATT
* * **
879663 ATCTCGTTGCGA--TAGTCAGA
1 ATCGCGTTGCGATTTTGT-ATT
*
879683 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTTTGTATT
* **
879704 ATCGCGTTGCGA--TAGTCAGA
1 ATCGCGTTGCGATTTTGT-ATT
*
879724 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTTTGTATT
879745 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
879758 AGTCAAAATC
Statistics
Matches: 71, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
19 5 0.07
20 25 0.35
21 37 0.52
22 4 0.06
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (21 bp):
ATCGCGTTGCGATTTTGTATT
Found at i:879692 original size:20 final size:20
Alignment explanation
Indices: 879667--879777 Score: 127
Period size: 20 Copynumber: 5.5 Consensus size: 20
879657 TGTATTATCT
879667 CGTTGCGATAGTCAGAATCG
1 CGTTGCGATAGTCAGAATCG
**
879687 CGTTGCGATTATGT-ATTATCG
1 CGTTGCGA-TA-GTCAGAATCG
879708 CGTTGCGATAGTCAGAATCG
1 CGTTGCGATAGTCAGAATCG
**
879728 CGTTGCGATTATGT-ATTATCG
1 CGTTGCGA-TA-GTCAGAATCG
*
879749 CGTTGCGATAGTCAAAATCG
1 CGTTGCGATAGTCAGAATCG
879769 CGTTGCGAT
1 CGTTGCGAT
879778 TTACATATTC
Statistics
Matches: 77, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
19 4 0.05
20 39 0.51
21 30 0.39
22 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (20 bp):
CGTTGCGATAGTCAGAATCG
Found at i:879702 original size:41 final size:41
Alignment explanation
Indices: 879641--879778 Score: 240
Period size: 41 Copynumber: 3.4 Consensus size: 41
879631 GCGCTTTGAA
* * *
879641 AATCGCATTGCGATTTTGTATTATCTCGTTGCGATAGTCAG
1 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
879682 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
*
879723 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAA
1 AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
879764 AATCGCGTTGCGATT
1 AATCGCGTTGCGATT
879779 TACATATTCG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 93 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (41 bp):
AATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAG
Found at i:879809 original size:82 final size:81
Alignment explanation
Indices: 879639--879856 Score: 224
Period size: 82 Copynumber: 2.7 Consensus size: 81
879629 TGGCGCTTTG
* * **
879639 AAAATCGCATTGCGATTTTGTATTATCTCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
1 AAAATCGCATTGCGA-TTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCGATTACATATT
*
879704 ATCGCGTTGCGATAGTC
65 ATCGCATTGCGATAGTC
* *
879721 AGAATCGCGTTGCGATTATGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCGATTTACATA-
1 AAAATCGCATTGCGATT-TGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCGA-TTACATAT
* **
879785 T-TCGTATTGCGATTTTAC
64 TATCGCATTGCGATAGT-C
** * ** **
879803 AAAATCGCAACGCGAATTTGGAAAATCGCAATGCGATAGTCAAAATCGCGTTGC
1 AAAATCGCATTGCG-ATTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGC
879857 AAATCTGAAA
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
81 13 0.12
82 92 0.81
83 8 0.07
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (81 bp):
AAAATCGCATTGCGATTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCGATTACATATTA
TCGCATTGCGATAGTC
Found at i:879817 original size:21 final size:21
Alignment explanation
Indices: 879793--879839 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
879783 TATTCGTATT
879793 GCGATTTTACAAAATCGCAAC
1 GCGATTTTACAAAATCGCAAC
* ** *
879814 GCGAATTTGGAAAATCGCAAT
1 GCGATTTTACAAAATCGCAAC
879835 GCGAT
1 GCGAT
879840 AGTCAAAATC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (21 bp):
GCGATTTTACAAAATCGCAAC
Found at i:887177 original size:36 final size:35
Alignment explanation
Indices: 887121--887200 Score: 117
Period size: 36 Copynumber: 2.3 Consensus size: 35
887111 ACCCATTCCT
*
887121 ATTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 ATTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
* *
887155 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACC
1 A-TTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
887191 ATTTTCAAAG
1 ATTTTCAAAG
887201 TTGGTTGCCA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
34 1 0.02
35 14 0.34
36 26 0.63
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (35 bp):
ATTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
Found at i:887742 original size:18 final size:17
Alignment explanation
Indices: 887719--887760 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
887709 TCTTTCTGAT
887719 GTCAACATTTCTAGCTAA
1 GTCAACA-TTCTAGCTAA
887737 GTCAACA-TCTAGCTAA
1 GTCAACATTCTAGCTAA
887753 GTCAACAT
1 GTCAACAT
887761 CTACATAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 16 0.70
18 7 0.30
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.29
Consensus pattern (17 bp):
GTCAACATTCTAGCTAA
Found at i:887749 original size:16 final size:16
Alignment explanation
Indices: 887728--887763 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
887718 TGTCAACATT
887728 TCTAGCTAAGTCAACA
1 TCTAGCTAAGTCAACA
887744 TCTAGCTAAGTCAACA
1 TCTAGCTAAGTCAACA
887760 TCTA
1 TCTA
887764 CATAGCCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (16 bp):
TCTAGCTAAGTCAACA
Found at i:891301 original size:16 final size:16
Alignment explanation
Indices: 891280--891335 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
891270 AAAATTTTTA
891280 CTATTCACAAAATTCG
1 CTATTCACAAAATTCG
* *
891296 CTATTCACGAAATTCT
1 CTATTCACAAAATTCG
*
891312 CTATTCATAAAATTCG
1 CTATTCACAAAATTCG
891328 CTATTCAC
1 CTATTCAC
891336 GTGAATAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (16 bp):
CTATTCACAAAATTCG
Found at i:891947 original size:33 final size:33
Alignment explanation
Indices: 891877--891939 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
891867 ACCAACACAA
891877 AATCTGCATCAACACTCTCAGAAGATGATGCAG
1 AATCTGCATCAACACTCTCAGAAGATGATGCAG
891910 AATCTGCATCAACACTCTCAGAAGATGATG
1 AATCTGCATCAACACTCTCAGAAGATGATG
891940 TATAATCTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (33 bp):
AATCTGCATCAACACTCTCAGAAGATGATGCAG
Found at i:907537 original size:28 final size:30
Alignment explanation
Indices: 907495--907572 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
907485 TAACTTATTT
* *
907495 ATTTTAGA-AAGAATATTATTTTGA-C-TAA
1 ATTTTAGATAA-AATATTAATTTAATCTTAA
907523 ATTTTAGATAAAATATTAATTTAATTCTTAA
1 ATTTTAGATAAAATATTAATTTAA-TCTTAA
*
907554 ACTTTAGATAAAATATTAA
1 ATTTTAGATAAAATATTAA
907573 ATTGATCCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 19 0.44
29 2 0.05
30 1 0.02
31 21 0.49
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (30 bp):
ATTTTAGATAAAATATTAATTTAATCTTAA
Found at i:908335 original size:17 final size:18
Alignment explanation
Indices: 908301--908333 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
908291 TTTTATTTGT
908301 AATTTATTTAAGTATTTA
1 AATTTATTTAAGTATTTA
908319 AATTT-TTTAA-TATTT
1 AATTTATTTAAGTATTT
908334 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
AATTTATTTAAGTATTTA
Found at i:910648 original size:34 final size:34
Alignment explanation
Indices: 910592--910668 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 34
910582 TTATTTCATT
*
910592 AATTTGGTTGGATTTATTTTAATTTATTTT-GTTA
1 AATTT-GTTGGATTTATTTTAATGTATTTTAGTTA
910626 AATTTGTTGGACTTT-TTGTTAATGTATTTTAGTTA
1 AATTTGTTGGA-TTTATT-TTAATGTATTTTAGTTA
*
910661 ATTTTGTT
1 AATTTGTT
910669 TATGACCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 8 0.21
34 19 0.50
35 11 0.29
ACGTcount: A:0.22, C:0.01, G:0.16, T:0.61
Consensus pattern (34 bp):
AATTTGTTGGATTTATTTTAATGTATTTTAGTTA
Found at i:913479 original size:33 final size:33
Alignment explanation
Indices: 913441--913526 Score: 145
Period size: 34 Copynumber: 2.6 Consensus size: 33
913431 TATTTAATTT
913441 AAAATAATTATGATTTTATGAATAATTAATTCC
1 AAAATAATTATGATTTTATGAATAATTAATTCC
**
913474 AAAATAATTATGATTTTTATGAATAATTAATTTT
1 AAAATAATTATGA-TTTTATGAATAATTAATTCC
913508 AAAATAATTATGATTTTAT
1 AAAATAATTATGATTTTAT
913527 TTTTGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
33 19 0.38
34 31 0.62
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (33 bp):
AAAATAATTATGATTTTATGAATAATTAATTCC
Found at i:913515 original size:15 final size:15
Alignment explanation
Indices: 913434--913517 Score: 62
Period size: 15 Copynumber: 5.2 Consensus size: 15
913424 AAAAGGGTAT
913434 TTAA-TTTAAAATAA
1 TTAATTTTAAAATAA
*
913448 TTATGATTTTATGAATAA
1 TTA--ATTTTA-AAATAA
**
913466 TTAATTCCAAAATAA
1 TTAATTTTAAAATAA
*
913481 TTATGATTTTTATGAATAA
1 TTA--A-TTTTA-AAATAA
913500 TTAATTTTAAAATAA
1 TTAATTTTAAAATAA
913515 TTA
1 TTA
913518 TGATTTTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
14 3 0.06
15 16 0.30
16 10 0.19
17 6 0.11
18 11 0.20
19 8 0.15
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (15 bp):
TTAATTTTAAAATAA
Found at i:916159 original size:53 final size:53
Alignment explanation
Indices: 916081--916200 Score: 190
Period size: 53 Copynumber: 2.3 Consensus size: 53
916071 TGCTACTTTG
*
916081 TTTAGCTTTTTGTTTAAGTGTCACAACTTAGAACATTATGATGATGATATTTAC
1 TTTA-CTTTTTGTTTAAGTGTCACAACTTAGAACATTAAGATGATGATATTTAC
* *
916135 TTTACTTTTTGTTTAAGTGTCACAACTTAGAACATTAAGATGATGTTATTTGC
1 TTTACTTTTTGTTTAAGTGTCACAACTTAGAACATTAAGATGATGATATTTAC
916188 TTTA-TTTTT-TTTA
1 TTTACTTTTTGTTTA
916201 TTTCTTCTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
51 4 0.06
52 5 0.08
53 50 0.79
54 4 0.06
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (53 bp):
TTTACTTTTTGTTTAAGTGTCACAACTTAGAACATTAAGATGATGATATTTAC
Found at i:921326 original size:23 final size:23
Alignment explanation
Indices: 921292--921344 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
921282 ACATTTTATA
*
921292 TGGCACTTCGGTGCAATCCTACG
1 TGGCACTACGGTGCAATCCTACG
* *
921315 TGGCACTACGGTGCATTTCTACG
1 TGGCACTACGGTGCAATCCTACG
*
921338 CGGCACT
1 TGGCACT
921345 TTAGTGCAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATCCTACG
Found at i:922145 original size:23 final size:23
Alignment explanation
Indices: 922119--922163 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
922109 CACCACAGCT
*
922119 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* * *
922142 CGTAGAATTGCATCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
922164 ATATAATGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:923032 original size:64 final size:63
Alignment explanation
Indices: 922899--923040 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
922889 TAATGAGGGT
* * ** *
922899 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATGTTGTATTATTACTGGG
1 ATGCATCGATGCA-TACTGATGCATCGATGCATAAAATGCATTCGATGTTCTATTATTAAAGAG
* *
922963 ATGCATCGATGCATGACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATT-TTAAA-A
1 ATGCATCGATGCAT-ACTGATGCATCGATGCA-TAAAATGCATTCGATG-TTCTATTATTAAAGA
923025 G
63 G
923026 AGTGCATCGATGCAT
1 A-TGCATCGATGCAT
923041 TACCAATGCA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
63 3 0.04
64 57 0.85
65 7 0.10
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCATACTGATGCATCGATGCATAAAATGCATTCGATGTTCTATTATTAAAGAG
Found at i:923598 original size:19 final size:17
Alignment explanation
Indices: 923566--923600 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
923556 ACGTTTGGAG
923566 AAGGAAGAGAAGAAGAT
1 AAGGAAGAGAAGAAGAT
923583 AAGGAAGAAGGAAGAAGA
1 AAGGAAG-A-GAAGAAGA
923601 AATGAGAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.37, T:0.03
Consensus pattern (17 bp):
AAGGAAGAGAAGAAGAT
Found at i:929350 original size:150 final size:149
Alignment explanation
Indices: 929146--929461 Score: 553
Period size: 150 Copynumber: 2.1 Consensus size: 149
929136 TATAAATGCA
* *
929146 CCGAAGTG-CCGCATAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATATAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAA
929210 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCCAAGACTTCACACATGT
65 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTT-CAAGACTTCACACATGT
* *
929275 TCCACAGAATATATATATATC
129 TCCAAAGAATATACATATATC
929296 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
929361 TCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
*
929426 CAAAGAATATACATATGTC
131 CAAAGAATATACATATATC
*
929445 CCGAAGGATCGCGTAGA
1 CCGAAGGACCGCGTAGA
929462 CCCTCTACCC
Statistics
Matches: 159, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
149 52 0.33
150 107 0.67
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
CAAAGAATATACATATATC
Found at i:930049 original size:64 final size:63
Alignment explanation
Indices: 929916--930072 Score: 158
Period size: 64 Copynumber: 2.4 Consensus size: 63
929906 TAATGAGGGT
* * * ** *
929916 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATGTTGTATTATTACTGGG
1 ATGCATCGATGCA-TACTAATGCATCGATGCATAAAATGCATTCGATGTTCTATTATTAAAGAG
* *
929980 ATGCATCGATGCATGACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATT-TTAAA-A
1 ATGCATCGATGCAT-ACTAATGCATCGATGCA-TAAAATGCATTCGATG-TTCTATTATTAAAGA
930042 G
63 G
*
930043 AGTGCATCGATGCATTACCAATGCATCGAT
1 A-TGCATCGATGCA-TACTAATGCATCGAT
930073 ACACCTTCAA
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
63 3 0.04
64 68 0.86
65 8 0.10
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (63 bp):
ATGCATCGATGCATACTAATGCATCGATGCATAAAATGCATTCGATGTTCTATTATTAAAGAG
Found at i:930634 original size:19 final size:17
Alignment explanation
Indices: 930602--930636 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
930592 ACGTTTGGAG
930602 AAGGAAGAGAAGAAGAT
1 AAGGAAGAGAAGAAGAT
930619 AAGGAAGAAGGAAGAAGA
1 AAGGAAG-A-GAAGAAGA
930637 AATGAGAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.37, T:0.03
Consensus pattern (17 bp):
AAGGAAGAGAAGAAGAT
Found at i:935884 original size:14 final size:14
Alignment explanation
Indices: 935861--935897 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
935851 TTAGCATAGA
*
935861 AACTCGAATAACTC
1 AACTCAAATAACTC
*
935875 TACTCAAATAACTC
1 AACTCAAATAACTC
935889 AACTCAAAT
1 AACTCAAAT
935898 TTCTTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.27, G:0.03, T:0.24
Consensus pattern (14 bp):
AACTCAAATAACTC
Found at i:936419 original size:29 final size:29
Alignment explanation
Indices: 936335--936413 Score: 97
Period size: 31 Copynumber: 2.7 Consensus size: 29
936325 TTGGAGTATT
*
936335 TTTTTTATCAAAATAAGTATCTAAAGTTA
1 TTTTTTATCAAAATAAGTATCTAAAGTAA
* *
936364 TCGTTTTAGTCAAAATAGGTATCTAAAG-AA
1 T-TTTTTA-TCAAAATAAGTATCTAAAGTAA
936394 TTTTTTGATCAAAATAAGTA
1 TTTTTT-ATCAAAATAAGTA
936414 CTTAAAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 16 0.38
30 8 0.19
31 18 0.43
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (29 bp):
TTTTTTATCAAAATAAGTATCTAAAGTAA
Found at i:936567 original size:28 final size:28
Alignment explanation
Indices: 936506--936567 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
936496 GAAAAAGTTT
* *
936506 AAATAGTTTAAGTATATATTTTGACGAA
1 AAATATTTTAAGTACATATTTTGACGAA
*
936534 AAATATTTTAAGTACATATTTTGACTAA
1 AAATATTTTAAGTACATATTTTGACGAA
936562 AAATAT
1 AAATAT
936568 AATCTTAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (28 bp):
AAATATTTTAAGTACATATTTTGACGAA
Found at i:947401 original size:12 final size:12
Alignment explanation
Indices: 947378--947414 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
947368 GCCCCGATTA
947378 CCCGATTACCCGG
1 CCCGA-TACCCGG
*
947391 CCCGATACCCGA
1 CCCGATACCCGG
947403 CCCGATACCCGG
1 CCCGATACCCGG
947415 GTATTCATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.19, C:0.49, G:0.22, T:0.11
Consensus pattern (12 bp):
CCCGATACCCGG
Found at i:949564 original size:29 final size:29
Alignment explanation
Indices: 949532--949588 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
949522 TGTTTAATCA
949532 GTTTCTAATTTGTATCTTGTATTTATTTG
1 GTTTCTAATTTGTATCTTGTATTTATTTG
*
949561 GTTTCTAATTTGTATGTTGTATTTATTT
1 GTTTCTAATTTGTATCTTGTATTTATTT
949589 CAGTCTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.18, C:0.05, G:0.14, T:0.63
Consensus pattern (29 bp):
GTTTCTAATTTGTATCTTGTATTTATTTG
Found at i:950840 original size:20 final size:20
Alignment explanation
Indices: 950815--950852 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
950805 CTATATGAGT
950815 TTGTTTTATTTATCTTTTGA
1 TTGTTTTATTTATCTTTTGA
*
950835 TTGTTTTATTTATGTTTT
1 TTGTTTTATTTATCTTTT
950853 AAATGTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.11, T:0.74
Consensus pattern (20 bp):
TTGTTTTATTTATCTTTTGA
Found at i:951166 original size:6 final size:6
Alignment explanation
Indices: 951157--951181 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
951147 GGGATGATAA
951157 ACGGGG ACGGGG ACGGGG ACGGGG A
1 ACGGGG ACGGGG ACGGGG ACGGGG A
951182 AAAACCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.64, T:0.00
Consensus pattern (6 bp):
ACGGGG
Found at i:951275 original size:12 final size:13
Alignment explanation
Indices: 951239--951288 Score: 68
Period size: 12 Copynumber: 4.0 Consensus size: 13
951229 GCCCCGATTA
*
951239 CCCGATTACTCGG
1 CCCGATTACCCGG
951252 CCCGATTACCCGG
1 CCCGATTACCCGG
*
951265 CCCGA-TACCCGA
1 CCCGATTACCCGG
951277 CCCGA-TACCCGG
1 CCCGATTACCCGG
951289 GTATTCATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
12 17 0.50
13 17 0.50
ACGTcount: A:0.18, C:0.46, G:0.22, T:0.14
Consensus pattern (13 bp):
CCCGATTACCCGG
Found at i:953438 original size:29 final size:29
Alignment explanation
Indices: 953406--953462 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
953396 TGTTTAATCA
953406 GTTTCTAATTTGTATCTTGTATTTATTTG
1 GTTTCTAATTTGTATCTTGTATTTATTTG
*
953435 GTTTCTAATTTGTATGTTGTATTTATTT
1 GTTTCTAATTTGTATCTTGTATTTATTT
953463 CAGTCTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.18, C:0.05, G:0.14, T:0.63
Consensus pattern (29 bp):
GTTTCTAATTTGTATCTTGTATTTATTTG
Found at i:954714 original size:20 final size:20
Alignment explanation
Indices: 954689--954726 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
954679 CTATATGAGT
954689 TTGTTTTATTTATCTTTTGA
1 TTGTTTTATTTATCTTTTGA
*
954709 TTGTTTTATTTATGTTTT
1 TTGTTTTATTTATCTTTT
954727 AAATGTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.11, T:0.74
Consensus pattern (20 bp):
TTGTTTTATTTATCTTTTGA
Found at i:956779 original size:947 final size:947
Alignment explanation
Indices: 954945--956839 Score: 3772
Period size: 947 Copynumber: 2.0 Consensus size: 947
954935 TAGATTGGTG
954945 AGTCCTCATCGGAGTCGTCTTCATCCAAAGACGTTGGAAGCGCTAATGTGTGCCCAAAGTTGGTT
1 AGTCCTCATCGGAGTCGTCTTCATCCAAAGACGTTGGAAGCGCTAATGTGTGCCCAAAGTTGGTT
955010 AATAAACGAAATAAGAGGTAATCAATCATTTCTTTTACTTATAAGTTTATTTTTTTTTCAATTGT
66 AATAAACGAAATAAGAGGTAATCAATCATTTCTTTTACTTATAAGTTTATTTTTTTTTCAATTGT
955075 ATTGTTGATATGATATGTTATATAAATTAATAAATACAGCAACTTGTTCACAAGAGTCCGAAGCA
131 ATTGTTGATATGATATGTTATATAAATTAATAAATACAGCAACTTGTTCACAAGAGTCCGAAGCA
955140 TATTGTAAAAGCATCGAATATGATCATGATGATGGTGACGAGGTACTAAATTGATATACAAGTTA
196 TATTGTAAAAGCATCGAATATGATCATGATGATGGTGACGAGGTACTAAATTGATATACAAGTTA
955205 TACGTGATATCATTAAATTTTTTATATAAATTTTGGTGACTTATAATTTTTTGTCTAATTGTAGC
261 TACGTGATATCATTAAATTTTTTATATAAATTTTGGTGACTTATAATTTTTTGTCTAATTGTAGC
955270 AATTGGGGGTCACAATTGTTTGATGACGGTGGTGGCGTCAAGCCCTTCATTGAGTGGCTCTAGAA
326 AATTGGGGGTCACAATTGTTTGATGACGGTGGTGGCGTCAAGCCCTTCATTGAGTGGCTCTAGAA
*
955335 TGTCGAGTCTGAGTCGGAGGAGTGATTCACGTTTATCATGCTTTATGTTAATTTTATTTCAATCA
391 TGTCGAGTCTGAGTCGGAGGAGTGATTCACATTTATCATGCTTTATGTTAATTTTATTTCAATCA
955400 TTTGGGGTCACAATAGCGAAGTGCTCTTTGTTATTTCAGTTTGGTTTTCTTCATATTAAGACTAC
456 TTTGGGGTCACAATAGCGAAGTGCTCTTTGTTATTTCAGTTTGGTTTTCTTCATATTAAGACTAC
955465 ATTTCCCTTTGTTTTTATATTTTGATTTGAGTTTGTTATTATCTGCCTTTAATTTCCCAATAATT
521 ATTTCCCTTTGTTTTTATATTTTGATTTGAGTTTGTTATTATCTGCCTTTAATTTCCCAATAATT
955530 CTTTCATTAGTTTACTATAAGATTCCTGAAATCACATAAGAAAATTCTATTAATTAGCTCCATGT
586 CTTTCATTAGTTTACTATAAGATTCCTGAAATCACATAAGAAAATTCTATTAATTAGCTCCATGT
955595 AATATACTACTCATCCAATTTTGGTTTGTGTTTCGATTCCGTTTAACTTATTTTAAATTTACTGA
651 AATATACTACTCATCCAATTTTGGTTTGTGTTTCGATTCCGTTTAACTTATTTTAAATTTACTGA
955660 AATGTTAAATTATTTTAATTTGATACAATTTGGAAGTATTAAATTACCCGTTTAAATAACCGTTT
716 AATGTTAAATTATTTTAATTTGATACAATTTGGAAGTATTAAATTACCCGTTTAAATAACCGTTT
955725 ATGCTAAACGGGGATACCCGTTTCCCCGCGGTTTTACCCGATTACCCGATGGGGATCCCCGTTTA
781 ATGCTAAACGGGGATACCCGTTTCCCCGCGGTTTTACCCGATTACCCGATGGGGATCCCCGTTTA
955790 AATCCCCGCGGTTTTTTAAACGGGGACGGGTATGGGTTTTTTAAACGGGGACGGGGACGGGGGGA
846 AATCCCCGCGGTTTTTTAAACGGGGACGGGTATGGGTTTTTTAAACGGGGACGGGGACGGGGGGA
955855 CCAATACCCGGCCCGAACCCGGCCCGTTGCCATCCCT
911 CCAATACCCGGCCCGAACCCGGCCCGTTGCCATCCCT
955892 AGTCCTCATCGGAGTCGTCTTCATCCAAAGACGTTGGAAGCGCTAATGTGTGCCCAAAGTTGGTT
1 AGTCCTCATCGGAGTCGTCTTCATCCAAAGACGTTGGAAGCGCTAATGTGTGCCCAAAGTTGGTT
955957 AATAAACGAAATAAGAGGTAATCAATCATTTCTTTTACTTATAAGTTTATTTTTTTTTCAATTGT
66 AATAAACGAAATAAGAGGTAATCAATCATTTCTTTTACTTATAAGTTTATTTTTTTTTCAATTGT
956022 ATTGTTGATATGATATGTTATATAAATTAATAAATACAGCAACTTGTTCACAAGAGTCCGAAGCA
131 ATTGTTGATATGATATGTTATATAAATTAATAAATACAGCAACTTGTTCACAAGAGTCCGAAGCA
956087 TATTGTAAAAGCATCGAATATGATCATGATGATGGTGACGAGGTACTAAATTGATATACAAGTTA
196 TATTGTAAAAGCATCGAATATGATCATGATGATGGTGACGAGGTACTAAATTGATATACAAGTTA
956152 TACGTGATATCATTAAATTTTTTATATAAATTTTGGTGACTTATAATTTTTTGTCTAATTGTAGC
261 TACGTGATATCATTAAATTTTTTATATAAATTTTGGTGACTTATAATTTTTTGTCTAATTGTAGC
956217 AATTGGGGGTCACAATTGTTTGATGACGGTGGTGGCGTCAAGCCCTTCATTGAGTGGCTCTAGAA
326 AATTGGGGGTCACAATTGTTTGATGACGGTGGTGGCGTCAAGCCCTTCATTGAGTGGCTCTAGAA
*
956282 TGTCGAGTCTGAGTCGGAGGAGTGATTCACATTTATCATGCTTTATGTTAATTTTATTTTAATCA
391 TGTCGAGTCTGAGTCGGAGGAGTGATTCACATTTATCATGCTTTATGTTAATTTTATTTCAATCA
956347 TTTGGGGTCACAATAGCGAAGTGCTCTTTGTTATTTCAGTTTGGTTTTCTTCATATTAAGACTAC
456 TTTGGGGTCACAATAGCGAAGTGCTCTTTGTTATTTCAGTTTGGTTTTCTTCATATTAAGACTAC
956412 ATTTCCCTTTGTTTTTATATTTTGATTTGAGTTTGTTATTATCTGCCTTTAATTTCCCAATAATT
521 ATTTCCCTTTGTTTTTATATTTTGATTTGAGTTTGTTATTATCTGCCTTTAATTTCCCAATAATT
956477 CTTTCATTAGTTTACTATAAGATTCCTGAAATCACATAAGAAAATTCTATTAATTAGCTCCATGT
586 CTTTCATTAGTTTACTATAAGATTCCTGAAATCACATAAGAAAATTCTATTAATTAGCTCCATGT
956542 AATATACTACTCATCCAATTTTGGTTTGTGTTTCGATTCCGTTTAACTTATTTTAAATTTACTGA
651 AATATACTACTCATCCAATTTTGGTTTGTGTTTCGATTCCGTTTAACTTATTTTAAATTTACTGA
956607 AATGTTAAATTATTTTAATTTGATACAATTTGGAAGTATTAAATTACCCGTTTAAATAACCGTTT
716 AATGTTAAATTATTTTAATTTGATACAATTTGGAAGTATTAAATTACCCGTTTAAATAACCGTTT
956672 ATGCTAAACGGGGATACCCGTTTCCCCGCGGTTTTACCCGATTACCCGATGGGGATCCCCGTTTA
781 ATGCTAAACGGGGATACCCGTTTCCCCGCGGTTTTACCCGATTACCCGATGGGGATCCCCGTTTA
956737 AATCCCCGCGGTTTTTTAAACGGGGACGGGTATGGGTTTTTTAAACGGGGACGGGGACGGGGGGA
846 AATCCCCGCGGTTTTTTAAACGGGGACGGGTATGGGTTTTTTAAACGGGGACGGGGACGGGGGGA
956802 CCAATACCCGGCCCGAACCCGGCCCGTTGCCATCCCT
911 CCAATACCCGGCCCGAACCCGGCCCGTTGCCATCCCT
956839 A
1 A
956840 CTCCGACTTC
Statistics
Matches: 946, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
947 946 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (947 bp):
AGTCCTCATCGGAGTCGTCTTCATCCAAAGACGTTGGAAGCGCTAATGTGTGCCCAAAGTTGGTT
AATAAACGAAATAAGAGGTAATCAATCATTTCTTTTACTTATAAGTTTATTTTTTTTTCAATTGT
ATTGTTGATATGATATGTTATATAAATTAATAAATACAGCAACTTGTTCACAAGAGTCCGAAGCA
TATTGTAAAAGCATCGAATATGATCATGATGATGGTGACGAGGTACTAAATTGATATACAAGTTA
TACGTGATATCATTAAATTTTTTATATAAATTTTGGTGACTTATAATTTTTTGTCTAATTGTAGC
AATTGGGGGTCACAATTGTTTGATGACGGTGGTGGCGTCAAGCCCTTCATTGAGTGGCTCTAGAA
TGTCGAGTCTGAGTCGGAGGAGTGATTCACATTTATCATGCTTTATGTTAATTTTATTTCAATCA
TTTGGGGTCACAATAGCGAAGTGCTCTTTGTTATTTCAGTTTGGTTTTCTTCATATTAAGACTAC
ATTTCCCTTTGTTTTTATATTTTGATTTGAGTTTGTTATTATCTGCCTTTAATTTCCCAATAATT
CTTTCATTAGTTTACTATAAGATTCCTGAAATCACATAAGAAAATTCTATTAATTAGCTCCATGT
AATATACTACTCATCCAATTTTGGTTTGTGTTTCGATTCCGTTTAACTTATTTTAAATTTACTGA
AATGTTAAATTATTTTAATTTGATACAATTTGGAAGTATTAAATTACCCGTTTAAATAACCGTTT
ATGCTAAACGGGGATACCCGTTTCCCCGCGGTTTTACCCGATTACCCGATGGGGATCCCCGTTTA
AATCCCCGCGGTTTTTTAAACGGGGACGGGTATGGGTTTTTTAAACGGGGACGGGGACGGGGGGA
CCAATACCCGGCCCGAACCCGGCCCGTTGCCATCCCT
Found at i:958047 original size:10 final size:11
Alignment explanation
Indices: 958016--958049 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
958006 GACACATATT
958016 ACCACGACCACG
1 ACCACGACC-CG
958028 ACCACGACCCG
1 ACCACGACCCG
958039 ACC-CGACCCG
1 ACCACGACCCG
958049 A
1 A
958050 GACGGACGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.29, C:0.53, G:0.18, T:0.00
Consensus pattern (11 bp):
ACCACGACCCG
Found at i:965029 original size:64 final size:63
Alignment explanation
Indices: 964941--965099 Score: 155
Period size: 64 Copynumber: 2.5 Consensus size: 63
964931 TCCCTTGACG
* * * * *
964941 GGTGCATCGATGCATTACC-CATGCATCGGTACATAAAT-CCTATTCGATGTT-TGTATTTTAAG
1 GGTGCATCGATGCACT-CCTTATGCATCGATACATAAATGCC-ATTCAATGTTAT-TAATTTAA-
965003 CA-
62 -AT
* * *
965005 GGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCAATGTTCATTAATTTAAAT
1 GGTGCATCGATGCACTCCTTATGCATCGATACATAAATGCCATTCAATGTT-ATTAATTTAAAT
965069 GAGTGCATCGATGCACTCCTTATGCATCGAT
1 G-GTGCATCGATGCACTCCTTATGCATCGAT
965100 GCACCTTCAA
Statistics
Matches: 81, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
63 3 0.04
64 40 0.49
65 37 0.46
66 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (63 bp):
GGTGCATCGATGCACTCCTTATGCATCGATACATAAATGCCATTCAATGTTATTAATTTAAAT
Found at i:965934 original size:732 final size:732
Alignment explanation
Indices: 964531--966733 Score: 4138
Period size: 732 Copynumber: 3.0 Consensus size: 732
964521 CATAGCTCAT
*
964531 ATCACTTATCATATCACATGTGCATTTGGTTCTTTTCACATATATCATTTATCAAATCATATGAA
1 ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATCATTTATCAAATCATATGAA
964596 CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
66 CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
964661 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
131 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
* *
964726 ACTCACCTTAGCCTTGGTTTGACTCGATTCTAATCCTTCGATTGTTCTGGAATAAGGTTACGCTC
196 ACTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCGATTGTTCTGGAATAAGATTACGCTC
*
964791 TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATAATATATTTCAAACTATTAAT
261 TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
964856 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
326 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
* *
964921 TATCGATGCATCCCTTGACGGGTGCATCGATGCATTACCCATGCATCGGTACATAAATCCTATTC
391 TATCGATGCATCCCTTGACGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTC
964986 GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
456 GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
965051 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
521 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
*
965116 CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATACACTCTGCCCAGAATTC
586 CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAGAATTC
* *
965181 ATATCTTGTACCCAAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCTTTTTATAT
651 ATATCTTGTACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
965246 TCTTAACTCCAGTACAC
716 TCTTAACTCCAGTACAC
*
965263 ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATTATTTATCAAATCATATGAA
1 ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATCATTTATCAAATCATATGAA
*
965328 CATATATACTTTATGTATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
66 CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
965393 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
131 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
* * * *
965458 ATTCACCTTAGCCTTGCTTTGATTCGATTTTAATCCTTCGATTGTTCTGGAATAAGATTATGCTC
196 ACTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCGATTGTTCTGGAATAAGATTACGCTC
965523 TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
261 TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
965588 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
326 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
*
965653 TATCGATGCATCCCTTGAGGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTC
391 TATCGATGCATCCCTTGACGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTC
* * *
965718 GATGTTTGTATTTTAAGCAGGTGCATCAATACACTCCTTATGAATCGATGCATTAATGGCATTCA
456 GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
965783 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
521 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
** *
965848 CAAGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAAAATTC
586 CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAGAATTC
*
965913 ATATCTTATACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
651 ATATCTTGTACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
965978 TCTTAACTCCAGTACAC
716 TCTTAACTCCAGTACAC
965995 ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATCATTTATCAAATCATATGAA
1 ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATCATTTATCAAATCATATGAA
* *
966060 CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATGACTATTGTTCTAT
66 CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
966125 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
131 GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
*
966190 ACTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCTATTGTTCTGGAATAAGATTACGCTC
196 ACTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCGATTGTTCTGGAATAAGATTACGCTC
*
966255 TAAATCTATATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
261 TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
966320 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
326 TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
*
966385 TATCGATGCATCCCTTGACGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTT
391 TATCGATGCATCCCTTGACGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTC
966450 GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
456 GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
966515 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
521 ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
966580 CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAGAATTC
586 CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAGAATTC
*
966645 ATATATTGTACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
651 ATATCTTGTACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
966710 TCTTAACTCCAGTACAC
716 TCTTAACTCCAGTACAC
966727 AT-ACTTA
1 ATCACTTA
966734 AACCAATCTA
Statistics
Matches: 1428, Mismatches: 43, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
731 5 0.00
732 1423 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (732 bp):
ATCACTTATCATATCACATGTGCATTTGGGTCTTTTCACATATATCATTTATCAAATCATATGAA
CATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTATTGTGCTAT
GAAAATCAACATAGGAATTAGACTTATCACAAGTGTTATTCCATTGTACCATACTTCTAATATGT
ACTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCGATTGTTCTGGAATAAGATTACGCTC
TAAATCTACATAGTAATACATTGATACTTATCAGCATACGAAATGATATATTTCAAACTATTAAT
TCTTAGGCTAAAAGAAAGTTATTTCCATCTCTTATTGAAGGTATGCATCGATGCACTACACCATG
TATCGATGCATCCCTTGACGGGTGCATCGATGCACTACCCATGCATCGGTGCATAAATCCTATTC
GATGTTTGTATTTTAAGCAGGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGCATTCA
ATGTTCATTAATTTAAATGAGTGCATCGATGCACTCCTTATGCATCGATGCACCTTCAACAAATT
CTGGGATTTTCTCTTGATGCATCGGTACACTTTGAATGTGCACCGATGCACTCTGCCCAGAATTC
ATATCTTGTACCCGAAAACTCATCCATTTCAGCTTAAATCTTTCATGTTTCATCCCCTTTTATAT
TCTTAACTCCAGTACAC
Found at i:966519 original size:64 final size:63
Alignment explanation
Indices: 966405--966566 Score: 170
Period size: 64 Copynumber: 2.5 Consensus size: 63
966395 TCCCTTGACG
* * ** *
966405 GGTGCATCGATGCACTACC-CATGCATCGGTGCATAAATCCTATTTGATGTT-TGTATTTTAAGC
1 GGTGCATCGATGCACT-CCTTATGCATCGATGCATAAATCCTATTCAATGTTAT-TAATTTAA--
966468 A-
62 AT
* *
966469 GGTGCATCGATGCACTCCTTATGCATCGATGCATTAATGGC-ATTCAATGTTCATTAATTTAAAT
1 GGTGCATCGATGCACTCCTTATGCATCGATGCATAAAT-CCTATTCAATGTT-ATTAATTTAAAT
966533 GAGTGCATCGATGCACTCCTTATGCATCGATGCA
1 G-GTGCATCGATGCACTCCTTATGCATCGATGCA
966567 CCTTCAACAA
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
63 3 0.04
64 41 0.48
65 40 0.47
66 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (63 bp):
GGTGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCAATGTTATTAATTTAAAT
Found at i:968817 original size:14 final size:14
Alignment explanation
Indices: 968798--968832 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
968788 TTGTAGAGAA
968798 ACTTGAATAACTCG
1 ACTTGAATAACTCG
*
968812 ACTTGAATAATTCG
1 ACTTGAATAACTCG
968826 ACTTGAA
1 ACTTGAA
968833 ATTCTTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (14 bp):
ACTTGAATAACTCG
Found at i:971757 original size:26 final size:25
Alignment explanation
Indices: 971699--971756 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
971689 CAAATTGTAA
*
971699 AATAAAAACATGTACATTTTTTTAG
1 AATAAAAACATGTAAATTTTTTTAG
971724 AATAAAAACATGTAAATTTTTTTAG
1 AATAAAAACATGTAAATTTTTTTAG
971749 AATAAAAA
1 AATAAAAA
971757 AATACAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (25 bp):
AATAAAAACATGTAAATTTTTTTAG
Found at i:977435 original size:22 final size:23
Alignment explanation
Indices: 977396--977439 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
977386 TTTATATTTA
977396 AAATAAATGTATACATGTTTTTT
1 AAATAAATGTATACATGTTTTTT
* *
977419 AAAT-AATTTATATATGTTTTT
1 AAATAAATGTATACATGTTTTT
977440 ATGCTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (23 bp):
AAATAAATGTATACATGTTTTTT
Found at i:978041 original size:13 final size:13
Alignment explanation
Indices: 978025--978072 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
978015 GTGTTTGTGT
*
978025 TGTTCGTTTATTG
1 TGTTCGTTTATTA
978038 TGTTC--TT-TTA
1 TGTTCGTTTATTA
*
978048 TGTTCATTTATTA
1 TGTTCGTTTATTA
978061 TGTTCGTTTATT
1 TGTTCGTTTATT
978073 TTCGTTTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 7 0.23
11 2 0.07
12 2 0.07
13 19 0.63
ACGTcount: A:0.12, C:0.08, G:0.15, T:0.65
Consensus pattern (13 bp):
TGTTCGTTTATTA
Found at i:978057 original size:23 final size:23
Alignment explanation
Indices: 978008--978105 Score: 99
Period size: 23 Copynumber: 4.3 Consensus size: 23
977998 GAATAAGTTT
* * *
978008 GTTTTTTGTGTTTGTGT-TGTTC
1 GTTTATTGTGTTCGTTTATGTTC
*
978030 GTTTATTGTGTTCTTTTATGTTC
1 GTTTATTGTGTTCGTTTATGTTC
* * *
978053 ATTTATTATGTTCGTTTATTTTC
1 GTTTATTGTGTTCGTTTATGTTC
* *
978076 GTTTGTTTGTGTTCGTTTATTTTC
1 GTTT-ATTGTGTTCGTTTATGTTC
978100 GTTTAT
1 GTTTAT
978106 CATTTAAATG
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
22 13 0.21
23 28 0.45
24 21 0.34
ACGTcount: A:0.08, C:0.07, G:0.18, T:0.66
Consensus pattern (23 bp):
GTTTATTGTGTTCGTTTATGTTC
Found at i:978089 original size:24 final size:23
Alignment explanation
Indices: 978027--978105 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
978017 GTTTGTGTTG
* *
978027 TTCGTTTATTGTGTTCTTTTATG
1 TTCGTTTATTGTGTTCGTTTATT
* *
978050 TTCATTTATTATGTTCGTTTATT
1 TTCGTTTATTGTGTTCGTTTATT
*
978073 TTCGTTTGTTTGTGTTCGTTTATT
1 TTCGTTT-ATTGTGTTCGTTTATT
978097 TTCGTTTAT
1 TTCGTTTAT
978106 CATTTAAATG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.10, C:0.09, G:0.15, T:0.66
Consensus pattern (23 bp):
TTCGTTTATTGTGTTCGTTTATT
Found at i:984792 original size:185 final size:185
Alignment explanation
Indices: 984544--984914 Score: 742
Period size: 185 Copynumber: 2.0 Consensus size: 185
984534 CTTTTGAAAA
984544 ATAAATTTGATAAAAGATACAATGTTTTATTTTAAATGATTGCAAAATTGATTGACATTGCATCT
1 ATAAATTTGATAAAAGATACAATGTTTTATTTTAAATGATTGCAAAATTGATTGACATTGCATCT
984609 ATTTTCGATTATGCTTGTTGGTCATAAAATAGGGATATATACATGGTGCATTTAGACTCTATAGA
66 ATTTTCGATTATGCTTGTTGGTCATAAAATAGGGATATATACATGGTGCATTTAGACTCTATAGA
984674 AATGACTAATTTATGCCTAGTTGCTAAGGATGAGCATGATAGTTGGTTATGGCAT
131 AATGACTAATTTATGCCTAGTTGCTAAGGATGAGCATGATAGTTGGTTATGGCAT
984729 ATAAATTTGATAAAAGATACAATGTTTTATTTTAAATGATTGCAAAATTGATTGACATTGCATCT
1 ATAAATTTGATAAAAGATACAATGTTTTATTTTAAATGATTGCAAAATTGATTGACATTGCATCT
984794 ATTTTCGATTATGCTTGTTGGTCATAAAATAGGGATATATACATGGTGCATTTAGACTCTATAGA
66 ATTTTCGATTATGCTTGTTGGTCATAAAATAGGGATATATACATGGTGCATTTAGACTCTATAGA
984859 AATGACTAATTTATGCCTAGTTGCTAAGGATGAGCATGATAGTTGGTTATGGCAT
131 AATGACTAATTTATGCCTAGTTGCTAAGGATGAGCATGATAGTTGGTTATGGCAT
984914 A
1 A
984915 GGAGACTAGG
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
185 186 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (185 bp):
ATAAATTTGATAAAAGATACAATGTTTTATTTTAAATGATTGCAAAATTGATTGACATTGCATCT
ATTTTCGATTATGCTTGTTGGTCATAAAATAGGGATATATACATGGTGCATTTAGACTCTATAGA
AATGACTAATTTATGCCTAGTTGCTAAGGATGAGCATGATAGTTGGTTATGGCAT
Found at i:987873 original size:22 final size:22
Alignment explanation
Indices: 987847--987926 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 22
987837 ATAGGGCAGA
987847 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* *
987869 GGGAACCGATTCCCCCTTTGAAG
1 GGGAATCGATACCCCC-TTGAAG
* *
987892 GGGAA-CTGATTCCCTC-T--AG
1 GGGAATC-GATACCCCCTTGAAG
987911 GGGAATCGATACCCCC
1 GGGAATCGATACCCCC
987927 ATGGGGTTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
19 14 0.28
20 1 0.02
21 1 0.02
22 15 0.30
23 19 0.38
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Done.