Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 39
Found at i:1952760 original size:23 final size:22
Alignment explanation
Indices: 1952718--1952801 Score: 98
Period size: 22 Copynumber: 3.8 Consensus size: 22
1952708 TTGGTGCAGA
*
1952718 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATACCCCCTTGAAG
*
1952740 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCC-TTGAAG
* *
1952763 GGGAACCGATTCCCTCC-TGTAG
1 GGGAACCGATACCC-CCTTGAAG
*
1952785 GGGAATCGATACCCCCT
1 GGGAACCGATACCCCCT
1952802 GGAGGTTCTG
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
21 2 0.04
22 30 0.56
23 20 0.37
24 2 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (22 bp):
GGGAACCGATACCCCCTTGAAG
Found at i:1956807 original size:11 final size:12
Alignment explanation
Indices: 1956787--1956837 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
1956777 AGATTTCTTC
1956787 AAAGTAAG-AAG
1 AAAGTAAGAAAG
*
1956798 AAAGTCAGAAAG
1 AAAGTAAGAAAG
*
1956810 AAAGAAAGAAAG
1 AAAGTAAGAAAG
*
1956822 AAAGAAAGAAAG
1 AAAGTAAGAAAG
1956834 AAAG
1 AAAG
1956838 ATAAATTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
11 7 0.19
12 29 0.81
ACGTcount: A:0.69, C:0.02, G:0.25, T:0.04
Consensus pattern (12 bp):
AAAGTAAGAAAG
Found at i:1956813 original size:4 final size:4
Alignment explanation
Indices: 1956804--1956838 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
1956794 GAAGAAAGTC
1956804 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA
1956839 TAAATTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:1965231 original size:16 final size:16
Alignment explanation
Indices: 1965212--1965243 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1965202 GTCATGTAGT
1965212 TTTTGTGTCTCCAACA
1 TTTTGTGTCTCCAACA
1965228 TTTTGTGTCTCCAACA
1 TTTTGTGTCTCCAACA
1965244 AAAGGCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (16 bp):
TTTTGTGTCTCCAACA
Found at i:1967861 original size:27 final size:25
Alignment explanation
Indices: 1967797--1967853 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
1967787 AAATAAATAG
* *
1967797 AATAAAGAAAATAAAAAAACGATTGA
1 AATAAAG-GAATAAAAAAACGAGTGA
1967823 AATAAAGGAATAAAAAAA-GAGTGA
1 AATAAAGGAATAAAAAAACGAGTGA
1967847 AGATAAA
1 A-ATAAA
1967854 AATGAATACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 6 0.21
25 15 0.54
26 7 0.25
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (25 bp):
AATAAAGGAATAAAAAAACGAGTGA
Found at i:1968067 original size:20 final size:19
Alignment explanation
Indices: 1968027--1968085 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
1968017 ATAGAGGGAA
1968027 AAAAATAAAAAAAGGTAAAT
1 AAAAATAAAAAAA-GTAAAT
1968047 AAAAATAAATAAAA-TAGAAT
1 AAAAATAAA-AAAAGTA-AAT
* *
1968067 AATAATAATAATAAGTAAA
1 AAAAATAA-AAAAAGTAAA
1968086 GAGTAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 2 0.06
20 24 0.73
21 7 0.21
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (19 bp):
AAAAATAAAAAAAGTAAAT
Found at i:1968428 original size:15 final size:17
Alignment explanation
Indices: 1968397--1968431 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
1968387 AAGTATATAT
1968397 AATAATAATAGTAAAAA
1 AATAATAATAGTAAAAA
1968414 AATAA-AATA-TAAAAA
1 AATAATAATAGTAAAAA
1968429 AAT
1 AAT
1968432 TGAATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 4 0.22
17 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
AATAATAATAGTAAAAA
Found at i:1968819 original size:37 final size:37
Alignment explanation
Indices: 1968769--1968876 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
1968759 TTATGGATCC
*
1968769 TATTTTTAGGAGTTTGAATCTTAGTAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
1968806 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
* * *
1968843 TATTTTTAGGAGTTCGAATCCTAGTAAACCTCTA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTA
1968877 ACGTTATGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
Found at i:1969564 original size:84 final size:84
Alignment explanation
Indices: 1969457--1970564 Score: 1126
Period size: 84 Copynumber: 13.4 Consensus size: 84
1969447 GTTTGCCTCT
* * * * *
1969457 GAGCTGAGTGTAATCGAACTCGAAGGTCTTCGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* * *
1969522 CTACAAATAATGTGTCTTG
66 CTGCAAATGATGTGCCTTG
* * * * *
1969541 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG-TGACAGATAACTCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTAT
* *
1969605 GCTGTAAATGATGTGCTCTCG
65 GCTGCAAATGATGTGC-CTTG
* * * * * * *
1969626 AAGCT--GTGTAATTGAACTCGAGGGTC--T--TTGGCAGATAACCCTTCTCGACTTATGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
**
1969685 CTGCAAATGATGCACCTTG
66 CTGCAAATGATGTGCCTTG
1969704 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
1969769 CTGCAAATGATATACCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * * * *
1969788 GAGCTAAGCATAGTCGAACTCAAAGGTCTTTTGGTT-ACATATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTAT
* *
1969852 GCTGTAAATGATGTGCCCTCG
65 GCTGCAAATGATGTG-CCTTG
* * * * * * *
1969873 AAGCTGAGTGTAATTGAATTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* * *
1969934 CTTCAAATAATGTGCATTG
66 CTGCAAATGATGTGCCTTG
* *
1969953 GAGCTGAGCATAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
*
1970018 CTGCAAATGATATGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * *
1970037 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGATT-ACAAATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTAT
* * *
1970101 GTTGTAAATGATGTGCCCTCG
65 GCTGCAAATGATGTG-CCTTG
* * * * * * * *
1970122 AAGCTGAGTGTAATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTTGACTTACGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1970183 CTGCAAATGATGTGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * *
1970202 GAGCTGGGCGTTGTCGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTCCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* **
1970267 CTGCAAATGATATAACTTG
66 CTGCAAATGATGTGCCTTG
* * * * * *
1970286 GAGCTGAGCGTAGTCGATCTCGAAGGTCTCTTGGTT-ACATATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCT-TTGGTTGGCAGATAACCCTTCTCGACTTAAGTTAT
* * *
1970350 GATGTAAATGGTGTGCCTTCG
65 GCTGCAAATGATGTGCCTT-G
* * ** * * * *
1970371 AAGCTTAATGTAATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1970432 CTGCAAATGATGTGCCTTG
66 CTGCAAATGATGTGCCTTG
* * *
1970451 GAGCTGAGCGTAGTTGAACTCGAAGGTCTTTGGTTGGCAGATAACCTTTCTCAACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
1970516 CTGCAAATGATATGCCTTA
66 CTGCAAATGATGTGCCTTG
*
1970535 GAGCTGAGCATAGTCGAACTCGAAGGTCTT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTT
1970565 GGTGGCTGAT
Statistics
Matches: 819, Mismatches: 175, Indels: 60
0.78 0.17 0.06
Matches are distributed among these distances:
78 7 0.01
79 36 0.04
80 95 0.12
81 104 0.13
82 7 0.01
83 17 0.02
84 450 0.55
85 103 0.13
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (84 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
CTGCAAATGATGTGCCTTG
Found at i:1969928 original size:165 final size:165
Alignment explanation
Indices: 1969457--1970564 Score: 963
Period size: 165 Copynumber: 6.7 Consensus size: 165
1969447 GTTTGCCTCT
* * * * * * *
1969457 GAGCTGAGTGTAATCGAACTCGAAGGTCTTCGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT-ACAGATAACCCTTCTAGACTTAAGTTATG
* * * * * *
1969522 CTACAAATAATGTG-TCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAAC
65 CTGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTT-G-G-CAGATAAC
* * * * * * *
1969586 TCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCTCTCG
127 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTAC-CTTG
* * * * * * * *
1969626 AAGCT--GTGTAATTGAACTCGAGGGTCTTTGG---CAGATAACCCTTCTCGACTTATGCTATGC
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTACAGATAACCCTTCTAGACTTAAGTTATGC
* * *
1969686 TGCAAATGA--TGCACCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAAC
66 TGCAAATGATGTGC-CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAAC
*
1969749 CCTTCTCGACTTAAGTTATGCTGCAAATGATATACCTTG
127 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTACCTTG
* * * * * *
1969788 GAGCTAAGCATAGTCGAACTCAAAGGTCTTTTGGTTACATATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTACAGATAACCCTTCTAGACTTAAGTTATG
* * * * * *
1969853 CTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATTGAATTCGAGGGTC-TTTGGCAGATAGCCCT
65 CTGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCT
* * * *
1969917 TCTCGACTTAAGTTATGCTTCAAATAATGTGCATTG
130 TCTCGACTTAAGTTATGCTGCAAATGATGTACCTTG
* * * *
1969953 GAGCTGAGCATAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT-ACAGATAACCCTTCTAGACTTAAGTTATG
* * * * * *
1970018 CTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGATTACAAATAAC
65 CTGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTG---GCAGATAAC
* * * * * * *
1970082 CCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCG
127 CCTTCTCGACTTAAGTTATGCTGCAAATGATGT-ACCTTG
* * * * * * * *
1970122 AAGCTGAGTGTAATCGAACTCGAGGGTCTTTGG---CAGATAGCCCTTCTTGACTTACGCTATGC
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTACAGATAACCCTTCTAGACTTAAGTTATGC
* * * ** *
1970184 TGCAAATGATGTG-CCTTGGAGCTGGGCGTTGTCGAACTCGAAGGTCTTTGGTTGGTAGATAACC
66 TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAACC
* * *
1970248 CTCCTCGACTTAAGTTATGCTGCAAATGATATAACTTG
128 CTTCTCGACTTAAGTTATGCTGCAAATGATGTACCTTG
* * * *
1970286 GAGCTGAGCGTAGTCGATCTCGAAGGTCTCTTGGTTACATATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCT-TTGGTTACAGATAACCCTTCTAGACTTAAGTTATG
* * * * * ** * *
1970351 ATGTAAATGGTGTGCCTTCGAAGCTTAATGTAATCGAACTCGAGGGTC-TTTGGCAGATAGCCCT
65 CTGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCT
* *
1970415 TCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
130 TCTCGACTTAAGTTATGCTGCAAATGATGTACCTTG
* * *
1970451 GAGCTGAGCGTAGTTGAACTCGAAGGTCTTTGGTTGGCAGATAACCTTTCTCA-ACTTAAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT-ACAGATAACCCTTCT-AGACTTAAGTTAT
* * * * *
1970515 GCTGCAAATGATATGCCTTAG-AGCTGAGCATAGTCGAACTCGAAGGTCTT
64 GCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTT
1970565 GGTGGCTGAT
Statistics
Matches: 761, Mismatches: 148, Indels: 64
0.78 0.15 0.07
Matches are distributed among these distances:
161 2 0.00
162 7 0.01
163 102 0.13
164 105 0.14
165 331 0.43
166 5 0.01
167 25 0.03
168 98 0.13
169 83 0.11
170 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (165 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTACAGATAACCCTTCTAGACTTAAGTTATGC
TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTT
CTCGACTTAAGTTATGCTGCAAATGATGTACCTTG
Found at i:1969999 original size:249 final size:249
Alignment explanation
Indices: 1969457--1970564 Score: 1725
Period size: 249 Copynumber: 4.5 Consensus size: 249
1969447 GTTTGCCTCT
* * * * *
1969457 GAGCTGAGTGTAATCGAACTCGAAGGTCTTCGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* * * * * * *
1969522 CTACAAATAATGTGTCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACT
66 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACATATAACC
* *
1969587 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCTCTCGAAGCT--GTGTAATTGAACTCGAGGG
131 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
* * **
1969650 TCTTTGGCAGATAACCCTTCTCGACTTATGCTATGCTGCAAATGATGCACCTTG
196 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
1969704 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* * * *
1969769 CTGCAAATGATATACCTTGGAGCTAAGCATAGTCGAACTCAAAGGTCTTTTGGTTACATATAACC
66 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACATATAACC
* *
1969834 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATTGAATTCGAGGG
131 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
* * * *
1969899 TCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTTCAAATAATGTGCATTG
196 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
* *
1969953 GAGCTGAGCATAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
1970018 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGATTACAAATAACC
66 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACATATAACC
*
1970083 CTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
131 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
* *
1970148 TCTTTGGCAGATAGCCCTTCTTGACTTACGCTATGCTGCAAATGATGTGCCTTG
196 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
* * * *
1970202 GAGCTGGGCGTTGTCGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTCCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
** * *
1970267 CTGCAAATGATATAACTTGGAGCTGAGCGTAGTCGATCTCGAAGGTCTCTTGGTTACATATAACC
66 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACATATAACC
* * * * *
1970332 CTTCTAGCCTTGAGTTATGATGTAAATGGTGTGCCTTCGAAGCTTAATGTAATCGAACTCGAGGG
131 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
1970397 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
196 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
* * *
1970451 GAGCTGAGCGTAGTTGAACTCGAAGGTCTTTGGTTGGCAGATAACCTTTCTCAACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
1970516 CTGCAAATGATATGCCTTAGAGCTGAGCATAGTCGAACTCGAAGGTCTT
66 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
1970565 GGTGGCTGAT
Statistics
Matches: 784, Mismatches: 75, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
247 157 0.20
249 627 0.80
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (249 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACATATAACC
CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG
TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
Found at i:1972818 original size:98 final size:98
Alignment explanation
Indices: 1972644--1972840 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
1972634 GTGACACTAC
*
1972644 ATGGGTGCCAAGAAGTTGCTGGTAAAGCTCTTTTTAGGTCATAAGAATAGGGTTAAATATTCTAT
1 ATGGGTGCCAAGAAGTTGCTGGTAAAGCTCTTTTTAGGTCATAAGAATAGGGTTAAATATTCCAT
*
1972709 TTTCCTCCTAGGCTCTCTGGAATCTTGTTTAGA
66 TTTCATCCTAGGCTCTCTGGAATCTTGTTTAGA
* *
1972742 ATGGGTGCCAAGAAGTTGCTGGTAAAGCTCTTTTTAGGTCATGAGAATAGGGTTAAATATTCCCT
1 ATGGGTGCCAAGAAGTTGCTGGTAAAGCTCTTTTTAGGTCATAAGAATAGGGTTAAATATTCCAT
*
1972807 TTTCATTCTAGGCTCTCTGGAATCTTGTTTAGA
66 TTTCATCCTAGGCTCTCTGGAATCTTGTTTAGA
1972840 A
1 A
1972841 GTACCTGACG
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (98 bp):
ATGGGTGCCAAGAAGTTGCTGGTAAAGCTCTTTTTAGGTCATAAGAATAGGGTTAAATATTCCAT
TTTCATCCTAGGCTCTCTGGAATCTTGTTTAGA
Found at i:1976121 original size:3 final size:3
Alignment explanation
Indices: 1976093--1976137 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
1976083 AAAAAAGGTA
*
1976093 AAT AAA AAT AAAT AA- AAT AGAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
1976138 AAACAGTAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:1976316 original size:22 final size:24
Alignment explanation
Indices: 1976288--1976335 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
1976278 CGTATATATA
*
1976288 AATAATAGAGAGA-GAAA-AAAAT
1 AATAATAGAGAAATGAAATAAAAT
*
1976310 AATAATAGGGAAATGAAATAAAAT
1 AATAATAGAGAAATGAAATAAAAT
1976334 AA
1 AA
1976336 GATAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (24 bp):
AATAATAGAGAAATGAAATAAAAT
Found at i:1976875 original size:37 final size:37
Alignment explanation
Indices: 1976823--1976930 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
1976813 TTATAGATCC
*
1976823 TATTTTTAGGAGTTTGAATCTTAGTAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
* *
1976860 TGTTTTTAAGAGTTTGAATCATAGTAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
* *
1976897 TATTTTTAGGAGTTCGAATCCTAGTAAAACTCTA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTA
1976931 ACGTTATGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
Found at i:1979129 original size:20 final size:21
Alignment explanation
Indices: 1979091--1979130 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1979081 CAATAATTTA
*
1979091 TATATTTTATATATCAAAATT
1 TATATTTTACATATCAAAATT
1979112 TATATTTTACAT-TCAAAAT
1 TATATTTTACATATCAAAAT
1979131 ATAACGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (21 bp):
TATATTTTACATATCAAAATT
Found at i:1980009 original size:14 final size:14
Alignment explanation
Indices: 1979990--1980017 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1979980 AACTTGGTTA
1979990 ATAATATTATTGTT
1 ATAATATTATTGTT
1980004 ATAATATTATTGTT
1 ATAATATTATTGTT
1980018 TCATTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
ATAATATTATTGTT
Found at i:1981966 original size:103 final size:103
Alignment explanation
Indices: 1981777--1981981 Score: 223
Period size: 103 Copynumber: 2.0 Consensus size: 103
1981767 ATAAAGATAT
* * *
1981777 ATATATATACAAAATTCGTGTCGTACATCTGATTTTAGTGGGTGAATTTACTAACAAGGATATTC
1 ATATATATACAAAACTCGTGTCGCACATCTGACTTTAGTGGGTGAATTTACTAACAAGGATATTC
* * *
1981842 TACATACATAAGGTTTCGAACTCGAGAAATATTTAAGC
66 TACATACACAAGGCTTCGAACTCGAGAAATACTTAAGC
* * * * * * * * *
1981880 ATATATATATATAACTCGTGTCGCATATTTGACTTTAGTGGGTGAATTTCCTAGCGATGATCTTC
1 ATATATATACAAAACTCGTGTCGCACATCTGACTTTAGTGGGTGAATTTACTAACAAGGATATTC
** * *
1981945 TACATTTACAAGGCCTT-GAACTTGAGACATACTTAAG
66 TACATACACAAGG-CTTCGAACTCGAGAAATACTTAAG
1981982 TAATATCAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
103 80 0.98
104 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (103 bp):
ATATATATACAAAACTCGTGTCGCACATCTGACTTTAGTGGGTGAATTTACTAACAAGGATATTC
TACATACACAAGGCTTCGAACTCGAGAAATACTTAAGC
Found at i:1986637 original size:13 final size:13
Alignment explanation
Indices: 1986600--1986640 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
1986590 TTATTTTTAA
1986600 ATATTTTTAATTT
1 ATATTTTTAATTT
**
1986613 AT-TTCATAATTT
1 ATATTTTTAATTT
1986625 ATATTTTTAATTT
1 ATATTTTTAATTT
1986638 ATA
1 ATA
1986641 AATATTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (13 bp):
ATATTTTTAATTT
Found at i:1986684 original size:2 final size:2
Alignment explanation
Indices: 1986677--1986715 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1986667 TGTTTGAATT
1986677 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1986716 CTTATTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1987353 original size:22 final size:21
Alignment explanation
Indices: 1987328--1987368 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1987318 TTTTCGAGCC
* *
1987328 AAAAAATCAATTTTTTAAGTT
1 AAAAAATCAACTTTTCAAGTT
1987349 AAAAAATCAACTTTTCAAGT
1 AAAAAATCAACTTTTCAAGT
1987369 CAAGTTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.37
Consensus pattern (21 bp):
AAAAAATCAACTTTTCAAGTT
Found at i:1993968 original size:18 final size:17
Alignment explanation
Indices: 1993947--1993996 Score: 73
Period size: 18 Copynumber: 2.9 Consensus size: 17
1993937 CTTAGGCTTG
1993947 GCTGATCCTTTAGATTCA
1 GCTGATCCTTTAGATT-A
* *
1993965 GCTGATCCTTGAGATTG
1 GCTGATCCTTTAGATTA
1993982 GCTGATCCTTTAGAT
1 GCTGATCCTTTAGAT
1993997 GTCTTCTGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (17 bp):
GCTGATCCTTTAGATTA
Found at i:1993987 original size:17 final size:17
Alignment explanation
Indices: 1993944--1993996 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
1993934 TCGCTTAGGC
1993944 TTGGCTGATCCTTTAGA
1 TTGGCTGATCCTTTAGA
* *
1993961 TTCAGCTGATCCTTGAGA
1 TT-GGCTGATCCTTTAGA
1993979 TTGGCTGATCCTTTAGA
1 TTGGCTGATCCTTTAGA
1993996 T
1 T
1993997 GTCTTCTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (17 bp):
TTGGCTGATCCTTTAGA
Found at i:1995986 original size:33 final size:33
Alignment explanation
Indices: 1995940--1996024 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 33
1995930 CTACTGCCGG
*
1995940 GTGGAACCAGTGCTGGTGCAGGGAAACTATCGA
1 GTGGAACCGGTGCTGGTGCAGGGAAACTATCGA
*
1995973 GTGGAACTGGTGCTGGTGGTGCAGGGAAACTATCGA
1 GTGGAACCGGTGC---TGGTGCAGGGAAACTATCGA
*
1996009 GTAGAACCGGTGCTGG
1 GTGGAACCGGTGCTGG
1996025 GGGTGCAGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 14 0.31
36 31 0.69
ACGTcount: A:0.24, C:0.16, G:0.40, T:0.20
Consensus pattern (33 bp):
GTGGAACCGGTGCTGGTGCAGGGAAACTATCGA
Found at i:1996000 original size:36 final size:36
Alignment explanation
Indices: 1995953--1996037 Score: 143
Period size: 36 Copynumber: 2.4 Consensus size: 36
1995943 GAACCAGTGC
* *
1995953 TGGTGCAGGGAAACTATCGAGTGGAACTGGTGCTGG
1 TGGTGCAGGGAAACTATCGAGTAGAACCGGTGCTGG
1995989 TGGTGCAGGGAAACTATCGAGTAGAACCGGTGCTGG
1 TGGTGCAGGGAAACTATCGAGTAGAACCGGTGCTGG
*
1996025 GGGTGCAGGGAAA
1 TGGTGCAGGGAAA
1996038 TTATTCTCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.25, C:0.14, G:0.42, T:0.19
Consensus pattern (36 bp):
TGGTGCAGGGAAACTATCGAGTAGAACCGGTGCTGG
Found at i:1997835 original size:22 final size:22
Alignment explanation
Indices: 1997810--1997858 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
1997800 TTATATTTTA
*
1997810 ATATTATAATAAAATAATA-ATT
1 ATATTAT-ATAAAATAAGATATT
*
1997832 ATATTATATAATATAAGATATT
1 ATATTATATAAAATAAGATATT
1997854 ATATT
1 ATATT
1997859 TTTATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATTATATAAAATAAGATATT
Found at i:1997843 original size:50 final size:50
Alignment explanation
Indices: 1997784--1997880 Score: 119
Period size: 50 Copynumber: 1.9 Consensus size: 50
1997774 TTGTTAATAT
*
1997784 TTATAATAATAT-TATATTATATTTTAATATTATAATAAA-ATAATAATTATA
1 TTATAATAATATAGATATTATATTTT--TATTATAATAAATAT-ATAATTATA
*
1997835 TTAT-ATAATATAAGATATTATATTTTTATTTTAATAAATATATAAT
1 TTATAATAATAT-AGATATTATATTTTTATTATAATAAATATATAAT
1997881 AAATTTTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
50 23 0.56
51 6 0.15
52 12 0.29
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (50 bp):
TTATAATAATATAGATATTATATTTTTATTATAATAAATATATAATTATA
Found at i:1997906 original size:27 final size:25
Alignment explanation
Indices: 1997790--1997934 Score: 93
Period size: 27 Copynumber: 5.6 Consensus size: 25
1997780 ATATTTATAA
* * *
1997790 TAATATTATATTATATTTTAATATT
1 TAATAATATATAATATTTTTATATT
1997815 ATAATAA-A-ATAATAATTATATTATA-T
1 -TAATAATATATAAT-ATT-T-TTATATT
* * *
1997841 AATATAAGATATTATATTTTTAT-TT
1 TA-ATAATATATAATATTTTTATATT
1997866 TAATAAATATATAATAAATTTTTATATT
1 TAAT-AATATATAAT--ATTTTTATATT
1997894 TAATAATGA-ATAATATTATTTATATT
1 TAATAAT-ATATAATATT-TTTATATT
*
1997920 TAATATTAATATAAT
1 TAATAAT-ATATAAT
1997935 CAATAATATT
Statistics
Matches: 95, Mismatches: 10, Indels: 27
0.72 0.08 0.20
Matches are distributed among these distances:
24 6 0.06
25 22 0.23
26 27 0.28
27 29 0.31
28 11 0.12
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
TAATAATATATAATATTTTTATATT
Found at i:1997972 original size:23 final size:23
Alignment explanation
Indices: 1997946--1997990 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1997936 AATAATATTT
1997946 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
1997969 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
1997991 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:1998029 original size:20 final size:20
Alignment explanation
Indices: 1998006--1998054 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1997996 ACACTATTAC
* *
1998006 TTTAAATAATTTTATTATAA
1 TTTAAATAATTATAATATAA
*
1998026 TTTATATAATTATAATATAA
1 TTTAAATAATTATAATATAA
1998046 TTT-AATAAT
1 TTTAAATAAT
1998055 AAATTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAATAATTATAATATAA
Found at i:1998258 original size:14 final size:14
Alignment explanation
Indices: 1998234--1998274 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
1998224 AAATGTAATT
*
1998234 CATTTTACGGAAAA
1 CATTTTCCGGAAAA
*
1998248 TATTTTCCGGAAAA
1 CATTTTCCGGAAAA
*
1998262 CATTTTCCAGAAA
1 CATTTTCCGGAAA
1998275 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (14 bp):
CATTTTCCGGAAAA
Found at i:1998309 original size:15 final size:15
Alignment explanation
Indices: 1998291--1998341 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
1998281 TCATTTTTAA
1998291 AATTCAAATTTCAGT
1 AATTCAAATTTCAGT
*
1998306 AATTC-ATTTTCCAGT
1 AATTCAAATTT-CAGT
*
1998321 AATTCAAATTCCAGT
1 AATTCAAATTTCAGT
1998336 AATTCA
1 AATTCA
1998342 TTTTTCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 4 0.13
15 24 0.77
16 3 0.10
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTCAAATTTCAGT
Found at i:1999221 original size:21 final size:21
Alignment explanation
Indices: 1999197--1999236 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1999187 ATTTAAAAGA
*
1999197 AATAAGGTTTTTAATAAATAT
1 AATAAGGTTTTTAAAAAATAT
**
1999218 AATAATTTTTTTAAAAAAT
1 AATAAGGTTTTTAAAAAAT
1999237 TCTAAATTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
AATAAGGTTTTTAAAAAATAT
Found at i:2006394 original size:23 final size:23
Alignment explanation
Indices: 2006364--2006412 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2006354 TGGTGGTTGG
*
2006364 TTTAATGG-ATGTTTAGACTTTAT
1 TTTAATGGTATATTTA-ACTTTAT
*
2006387 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
2006410 TTT
1 TTT
2006413 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:2016078 original size:23 final size:23
Alignment explanation
Indices: 2016048--2016096 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2016038 TGGTGGTTGG
*
2016048 TTTAATGG-ATGTTTAGACTTTAT
1 TTTAATGGTATATTTA-ACTTTAT
*
2016071 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
2016094 TTT
1 TTT
2016097 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:2021571 original size:24 final size:24
Alignment explanation
Indices: 2021518--2021577 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
2021508 ACATTCTATG
* *
2021518 TGGCACTTTATGTGCAATTTTACA
1 TGGCACTTTATGTACAATTCTACA
*
2021542 TGGCACTATATGTACAATTCTACA
1 TGGCACTTTATGTACAATTCTACA
2021566 CT-GCACTTTATG
1 -TGGCACTTTATG
2021578 AACTATTCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 30 0.97
25 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (24 bp):
TGGCACTTTATGTACAATTCTACA
Found at i:2025358 original size:24 final size:24
Alignment explanation
Indices: 2025331--2025382 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
2025321 AAACGATATA
*
2025331 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
2025355 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
2025379 TCAA
1 TCAA
2025383 GTAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:2025383 original size:24 final size:24
Alignment explanation
Indices: 2025351--2025468 Score: 159
Period size: 24 Copynumber: 4.9 Consensus size: 24
2025341 AAACATAAAT
*
2025351 CAGGTCAAGTATCATATCAGAAAT-
1 CAGGTCAAGTATCAGATCAG-AATC
*
2025375 CAGGTCAAGTAACAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
2025399 CAAGTCAAGTATCAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
2025423 CATGTC-AGATATCAGATCAGAATC
1 CAGGTCAAG-TATCAGATCAGAATC
*
2025447 CATGTCAAGTATCAGATCAGAA
1 CAGGTCAAGTATCAGATCAGAA
2025469 ATCAAATCGA
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.06
24 79 0.92
25 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (24 bp):
CAGGTCAAGTATCAGATCAGAATC
Found at i:2025485 original size:48 final size:47
Alignment explanation
Indices: 2025354--2025485 Score: 151
Period size: 48 Copynumber: 2.7 Consensus size: 47
2025344 CATAAATCAG
* *
2025354 GTCAAGTATCATATCAGAAATCAGGTCAAGTAA-CAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAAATCAAGTCAA--AATCAGATCAGAATCCAA
* * *
2025402 GTCAAGTATCAGATCAG-AATCCATGTCAGATATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAAAT-CAAGTCA-AAATCAGATCAGAATCCAA
*
2025450 GTCAAGTATCAGATCAGAAATCAAATCGAAAATCAG
1 GTCAAGTATCAGATCAGAAATCAAGTC-AAAATCAG
2025486 GTAAAATATT
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
47 4 0.06
48 63 0.88
49 5 0.07
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (47 bp):
GTCAAGTATCAGATCAGAAATCAAGTCAAAATCAGATCAGAATCCAA
Found at i:2025659 original size:47 final size:47
Alignment explanation
Indices: 2025590--2025688 Score: 198
Period size: 47 Copynumber: 2.1 Consensus size: 47
2025580 GTATACCGAT
2025590 AGAATATCGGAATTCAGAATCACTATTGAAAGAGTTCAATAACTGAC
1 AGAATATCGGAATTCAGAATCACTATTGAAAGAGTTCAATAACTGAC
2025637 AGAATATCGGAATTCAGAATCACTATTGAAAGAGTTCAATAACTGAC
1 AGAATATCGGAATTCAGAATCACTATTGAAAGAGTTCAATAACTGAC
2025684 AGAAT
1 AGAAT
2025689 CCAGTTATTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.25
Consensus pattern (47 bp):
AGAATATCGGAATTCAGAATCACTATTGAAAGAGTTCAATAACTGAC
Found at i:2026625 original size:18 final size:18
Alignment explanation
Indices: 2026604--2026644 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
2026594 CTTCCATCCG
*
2026604 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
2026622 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
*
2026640 GTCTT
1 ATCTT
2026645 TCGAACAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.02, T:0.54
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:2027962 original size:18 final size:18
Alignment explanation
Indices: 2027939--2027979 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
2027929 TCAATGTCAA
2027939 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
2027957 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
2027975 CGGGT
1 CGGGT
2027980 AAACGGGGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.51, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:2027979 original size:13 final size:13
Alignment explanation
Indices: 2027919--2027962 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
2027909 TCCGGTCAAC
*
2027919 GGTCAACGGGTCAA
1 GGTCAACGGGTC-G
*
2027933 TGTCAACGGGTCG
1 GGTCAACGGGTCG
2027946 GGTCAACGGGTCG
1 GGTCAACGGGTCG
2027959 GGTC
1 GGTC
2027963 GGGTCAACGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.18, C:0.23, G:0.41, T:0.18
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:2027984 original size:13 final size:13
Alignment explanation
Indices: 2027957--2027986 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2027947 GTCAACGGGT
*
2027957 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
2027970 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
2027983 CGGG
1 CGGG
2027987 GTCTGGTCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.20, G:0.50, T:0.13
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:2031555 original size:36 final size:34
Alignment explanation
Indices: 2031499--2031589 Score: 96
Period size: 34 Copynumber: 2.6 Consensus size: 34
2031489 AGCTCGTATA
2031499 ATGT-CCGAAGGACCTATCATCCCG-AGGATGTCATCT
1 ATGTCCCGAAGGA-CTATCAT-CCGAAGGA-GT-ATCT
* *
2031535 GTGTCCCGAAGGACTGTCATCCGAAGGAGTATCT
1 ATGTCCCGAAGGACTATCATCCGAAGGAGTATCT
*
2031569 ATGTCCCGTAGGACATATCAT
1 ATGTCCCGAAGGAC-TATCAT
2031590 ATGTCTATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
34 16 0.34
35 10 0.21
36 13 0.28
37 8 0.17
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (34 bp):
ATGTCCCGAAGGACTATCATCCGAAGGAGTATCT
Found at i:2031786 original size:45 final size:44
Alignment explanation
Indices: 2031734--2031829 Score: 158
Period size: 45 Copynumber: 2.2 Consensus size: 44
2031724 TAACCATGTA
2031734 TTCATATCATATCACATGTATCACGTATTACAT-TTCATATGTCAT
1 TTCATATCATATCACATGTATCACGTATTACATATTCATA--TCAT
*
2031779 TTCATATCATATCACATGTATCACGTATTGCATATTCATATCAT
1 TTCATATCATATCACATGTATCACGTATTACATATTCATATCAT
2031823 TTCATAT
1 TTCATAT
2031830 AGTCTATAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
44 11 0.22
45 32 0.65
46 6 0.12
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (44 bp):
TTCATATCATATCACATGTATCACGTATTACATATTCATATCAT
Found at i:2032262 original size:33 final size:34
Alignment explanation
Indices: 2032220--2032286 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
2032210 TTTCATTAAG
2032220 GGGGAATCGATA-CCCCCAGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCAGGGGAATCTGTTCCC
2032253 GGGGAATCGATACCCCCCAGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCAGGGGAATCTGTTCCC
2032287 CTGCACATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (34 bp):
GGGGAATCGATACCCCCCAGGGGAATCTGTTCCC
Found at i:2032287 original size:19 final size:19
Alignment explanation
Indices: 2032232--2032287 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
2032222 GGAATCGATA
2032232 CCCCCAGGGGAATCTGTT-
1 CCCCCAGGGGAATCTGTTC
*
2032250 --CCC-GGGGAATC-GATAC
1 CCCCCAGGGGAATCTG-TTC
2032266 CCCCCAGGGGAATCTGTTC
1 CCCCCAGGGGAATCTGTTC
2032285 CCC
1 CCC
2032288 TGCACATACT
Statistics
Matches: 30, Mismatches: 2, Indels: 11
0.70 0.05 0.26
Matches are distributed among these distances:
14 1 0.03
15 9 0.30
16 3 0.10
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.18, C:0.38, G:0.27, T:0.18
Consensus pattern (19 bp):
CCCCCAGGGGAATCTGTTC
Found at i:2035488 original size:23 final size:23
Alignment explanation
Indices: 2035455--2035505 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
2035445 AAAAATATAT
**
2035455 TAGGTACCGCTTATATAATGTAA
1 TAGGTACCGCTTATATAATAAAA
*
2035478 TAGGTAGCGCTTATATAATAAAA
1 TAGGTACCGCTTATATAATAAAA
2035501 TAGGT
1 TAGGT
2035506 TAATTACTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGGTACCGCTTATATAATAAAA
Found at i:2035559 original size:23 final size:23
Alignment explanation
Indices: 2035533--2035592 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
2035523 ATCAAGCACA
*
2035533 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
2035556 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
* *
2035579 ATAATAAAATAGGT
1 ATAACATAATAGGT
2035593 TAATTACTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:2035579 original size:87 final size:87
Alignment explanation
Indices: 2035428--2035772 Score: 573
Period size: 87 Copynumber: 4.0 Consensus size: 87
2035418 CATTTAACCG
* * *
2035428 GAAAGATTATCAAGCACAAAAATATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
1 GAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
2035493 TAATAAAATAGGTTAATTACTA
66 TAATAAAATAGGTTAATTACTA
*
2035515 GAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATA
1 GAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
*
2035580 TAATAAAATAGGTTAATTACTG
66 TAATAAAATAGGTTAATTACTA
* *
2035602 GAAACATTATCAAGCACAATAACATATTAGATACCGCTTATATAATGTAATATGTAGCGCTTATA
1 GAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
*
2035667 TAATAAAATAAGTTAATTACTA
66 TAATAAAATAGGTTAATTACTA
* * * *
2035689 GAAACATTATCAAGCACAATAACATATTAGGTAGCACTTATATAACGTAATAGGTAGCTCTTATA
1 GAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
*
2035754 TAATAAAATATGTTAATTA
66 TAATAAAATAGGTTAATTA
2035773 TTTAATTTTT
Statistics
Matches: 241, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 241 1.00
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (87 bp):
GAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATA
TAATAAAATAGGTTAATTACTA
Found at i:2035742 original size:23 final size:23
Alignment explanation
Indices: 2035707--2035756 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
2035697 ATCAAGCACA
*
2035707 ATAACATATTAGGTAGCACTTAT
1 ATAACATAATAGGTAGCACTTAT
* *
2035730 ATAACGTAATAGGTAGCTCTTAT
1 ATAACATAATAGGTAGCACTTAT
2035753 ATAA
1 ATAA
2035757 TAAAATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (23 bp):
ATAACATAATAGGTAGCACTTAT
Found at i:2035763 original size:23 final size:23
Alignment explanation
Indices: 2035707--2035763 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
2035697 ATCAAGCACA
* *
2035707 ATAACATATTAGGTAGCACTTAT
1 ATAACAAAATAGGTAGCACTTAT
** *
2035730 ATAACGTAATAGGTAGCTCTTAT
1 ATAACAAAATAGGTAGCACTTAT
*
2035753 ATAATAAAATA
1 ATAACAAAATA
2035764 TGTTAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (23 bp):
ATAACAAAATAGGTAGCACTTAT
Found at i:2036272 original size:112 final size:112
Alignment explanation
Indices: 2035951--2036468 Score: 801
Period size: 112 Copynumber: 4.6 Consensus size: 112
2035941 TAGCGCCTAT
* *
2035951 AAAGTATCGATAC--TTTATAAATATGTATCGATACTTTACAATATAACATGTAAAAATATGAC-
1 AAAGTATCGATCCTTTTTATAAA-AAGTATCGATACTTTACAATATAACATGTAAAAATATGACA
* *
2036013 AAACCTACTTTCATTATGACAAAACCGGTAAAATTTACCGGATATGTTG
65 AAACC-AGTTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTG
* * *
2036062 AAAGTATCGATCCTTTTTAAAAAAAATGTATCGATACTTTACAATATAACAGGTAAAAATATAAC
1 AAAGTATCGATCCTTTTT-ATAAAAA-GTATCGATACTTTACAATATAACATGTAAAAATATGAC
* * *
2036127 AAAACCAATTTCATTATGACAAAACCGGCAAAATTTACCTGATATATTG
64 AAAACCAGTTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTG
*
2036176 AAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAATATAACATGTAAAAATATGACAA
1 AAAGTATCGATCCTTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
* *
2036241 AATCAGTTTCATTATGACAAAACCAGTAAAATTTACCTGATATGTTG
66 AACCAGTTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTG
* *
2036288 AAAGTATCGATCCTTTTTATAAAAAAG-ATCGATACTTTACAATATAATAGGTAAAAATATGACA
1 AAAGTATCGATCCTTTTTAT-AAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACA
*
2036352 AAACCAGTTTCATTATGACAAAACCGGTAAAATTTACCTAATATGTTG
65 AAACCAGTTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTG
* *
2036400 AAAGTATCGATCATTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAACATGACAA
1 AAAGTATCGATCCTTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
2036465 AACC
66 AACC
2036469 GGTAAAATTT
Statistics
Matches: 373, Mismatches: 27, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
111 18 0.05
112 237 0.64
113 16 0.04
114 97 0.26
115 5 0.01
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (112 bp):
AAAGTATCGATCCTTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
AACCAGTTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTG
Found at i:2036422 original size:224 final size:221
Alignment explanation
Indices: 2035951--2036643 Score: 929
Period size: 224 Copynumber: 3.2 Consensus size: 221
2035941 TAGCGCCTAT
* *
2035951 AAAGTATCGATA-CTTTATAAATATGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
1 AAAGTATCGATATTTTTATAAA-AAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
* *
2036015 ACCTACTTTCATTATGACAAAACCGGTAAAATTTACCGGATATGTTGAAAGTATCGATCCTTTTT
65 AAC-A-TTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTTTTT
* * *
2036080 AAAAAAAATGTATCGATACTTTACAATATAACAGGTAAAAATATAACAAAACCAATTTCATTATG
128 ATAAAAAA-G-ATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTATG
* *
2036145 ACAAAACCGGCAAAATTTACCTGATATATTG
191 ACAAAACCGGTAAAATTTACCTGATATGTTG
* *
2036176 AAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAATATAACATGTAAAAATATGACAA
1 AAAGTATCGAT-ATTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
*
2036241 AATCAGTTTCATTATGACAAAACCAGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTTTTT
65 AA-CA-TTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTTTTT
*
2036306 ATAAAAAAGATCGATACTTTACAATATAATAGGTAAAAATATGACAAAACCAGTTTCATTATGAC
128 ATAAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTATGAC
*
2036371 AAAACCGGTAAAATTTACCTAATATGTTG
193 AAAACCGGTAAAATTTACCTGATATGTTG
2036400 AAAGTATCGATCATTTTTATAAAAAGTATCGATACTTTACAATATAACATG--------T---AA
1 AAAGTATCGAT-ATTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAA
* * *
2036454 AA-A---C---ATGACAAAACCGGTAAAATTTACTTGATATGTTGAAAGTATCAATCTTTTTTTA
65 AACATTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATC-CTTTTTA
* * * * *
2036512 TAAAAAGGATCGATACTTTATAATATAACAGTTAAAAAGATGACAAAATCAGTTTCATTATGACA
129 TAAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTATGACA
*
2036577 AAACCGGTAAAATTTACCTGATATGTCG
194 AAACCGGTAAAATTTACCTGATATGTTG
*
2036605 AAAGTATAGATACTTTTTATAAAAATGTATCGATACTTT
1 AAAGTATCGATA-TTTTTATAAAAA-GTATCGATACTTT
2036644 GTTGAAAGTT
Statistics
Matches: 432, Mismatches: 30, Indels: 31
0.88 0.06 0.06
Matches are distributed among these distances:
204 44 0.10
205 113 0.26
206 13 0.03
207 1 0.00
211 1 0.00
213 4 0.01
216 1 0.00
224 128 0.30
225 12 0.03
226 106 0.25
227 9 0.02
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (221 bp):
AAAGTATCGATATTTTTATAAAAAGTATCGATACTTTACAATATAACATGTAAAAATATGACAAA
ACATTTCATTATGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTTTTTATA
AAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTATGACAAA
ACCGGTAAAATTTACCTGATATGTTG
Found at i:2036555 original size:93 final size:92
Alignment explanation
Indices: 2036366--2036559 Score: 300
Period size: 93 Copynumber: 2.1 Consensus size: 92
2036356 CAGTTTCATT
* *
2036366 ATGACAAAACCGGTAAAATTTACCTAATATGTTGAAAGTATCGATCATTTTTATAAAAAGTATCG
1 ATGACAAAACCGGTAAAATTTACCTAATATGTTGAAAGTATCAATCATTTTTATAAAAAGGATCG
2036431 ATACTTTACAATATAACATGTAAAAAC
66 ATACTTTACAATATAACATGTAAAAAC
* * *
2036458 ATGACAAAACCGGTAAAATTTACTTGATATGTTGAAAGTATCAATCTTTTTTTATAAAAAGGATC
1 ATGACAAAACCGGTAAAATTTACCTAATATGTTGAAAGTATCAATC-ATTTTTATAAAAAGGATC
* *
2036523 GATACTTTATAATATAACA-GTTAAAAAG
65 GATACTTTACAATATAACATG-TAAAAAC
2036551 ATGACAAAA
1 ATGACAAAA
2036560 TCAGTTTCAT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
92 44 0.47
93 49 0.53
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (92 bp):
ATGACAAAACCGGTAAAATTTACCTAATATGTTGAAAGTATCAATCATTTTTATAAAAAGGATCG
ATACTTTACAATATAACATGTAAAAAC
Found at i:2036610 original size:205 final size:205
Alignment explanation
Indices: 2036254--2036643 Score: 631
Period size: 205 Copynumber: 1.9 Consensus size: 205
2036244 CAGTTTCATT
*
2036254 ATGACAAAACCAGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTTTTTATAAAAAAGATCG
1 ATGACAAAACCAGTAAAATTTACCTGATATGTTGAAAGTATCAATCCTTTTTATAAAAAAGATCG
* *
2036319 ATACTTTACAATATAATAGGTAAAAATATGACAAAACCAGTTTCATTATGACAAAACCGGTAAAA
66 ATACTTTACAATATAACAGGTAAAAAGATGACAAAACCAGTTTCATTATGACAAAACCGGTAAAA
* *
2036384 TTTACCTAATATGTTGAAAGTATCGAT-CATTTTTATAAAAA-GTATCGATACTTTACAATATAA
131 TTTACCTAATATGTCGAAAGTATAGATAC-TTTTTATAAAAATGTATCGATACTTTACAATATAA
2036447 CATGTAAAAAC
195 CATGTAAAAAC
* * * *
2036458 ATGACAAAACCGGTAAAATTTACTTGATATGTTGAAAGTATCAATCTTTTTTTATAAAAAGGATC
1 ATGACAAAACCAGTAAAATTTACCTGATATGTTGAAAGTATCAATC-CTTTTTATAAAAAAGATC
* * *
2036523 GATACTTTATAATATAACAGTTAAAAAGATGACAAAATCAGTTTCATTATGACAAAACCGGTAAA
65 GATACTTTACAATATAACAGGTAAAAAGATGACAAAACCAGTTTCATTATGACAAAACCGGTAAA
*
2036588 ATTTACCTGATATGTCGAAAGTATAGATACTTTTTATAAAAATGTATCGATACTTT
130 ATTTACCTAATATGTCGAAAGTATAGATACTTTTTATAAAAATGTATCGATACTTT
2036644 GTTGAAAGTT
Statistics
Matches: 170, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
204 43 0.25
205 113 0.66
206 14 0.08
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (205 bp):
ATGACAAAACCAGTAAAATTTACCTGATATGTTGAAAGTATCAATCCTTTTTATAAAAAAGATCG
ATACTTTACAATATAACAGGTAAAAAGATGACAAAACCAGTTTCATTATGACAAAACCGGTAAAA
TTTACCTAATATGTCGAAAGTATAGATACTTTTTATAAAAATGTATCGATACTTTACAATATAAC
ATGTAAAAAC
Found at i:2037063 original size:76 final size:76
Alignment explanation
Indices: 2036972--2037125 Score: 245
Period size: 76 Copynumber: 2.0 Consensus size: 76
2036962 AACACTTATA
2036972 TAATAAAATAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATAT
1 TAATAAAATAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATAT
*
2037037 AATGTAATAGG
66 AACGTAATAGG
* * * * * *
2037048 TAATAAAATATGTTAATTACTGGAAACATTATTAAGCACAGTAATATATTAGGTAGCGCTTATAT
1 TAATAAAATAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATAT
2037113 AACGTAATAGG
66 AACGTAATAGG
2037124 TA
1 TA
2037126 GCGATTATAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (76 bp):
TAATAAAATAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATAT
AACGTAATAGG
Found at i:2037144 original size:23 final size:23
Alignment explanation
Indices: 2037097--2037145 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
2037087 AGTAATATAT
* **
2037097 TAGGTAGCGCTTATATAACGTAA
1 TAGGTAGCGATTATATAACAAAA
*
2037120 TAGGTAGCGATTATATAATAAAA
1 TAGGTAGCGATTATATAACAAAA
2037143 TAG
1 TAG
2037146 TTTAATTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (23 bp):
TAGGTAGCGATTATATAACAAAA
Found at i:2037687 original size:112 final size:112
Alignment explanation
Indices: 2037394--2037863 Score: 696
Period size: 112 Copynumber: 4.2 Consensus size: 112
2037384 GTATCGATAC
* * *
2037394 TTTATAAAAATATATCGATACTTTACAATATAACATGTAAAAATATGACAAAACCA---T-GTTA
1 TTTATAAAAA-AGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTA
*
2037455 TGACAAAACCGGTAAAATTTACCGGATATGTTGAAAGTATCGATCCTT
65 TGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTT
* * * * *
2037503 TTTATAAAAAAATATTGATACTTTACAATATAGCAGTTAAAAGTATGACAAAACCAGTTTCATTA
1 TTTAT-AAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTA
*
2037568 TGACAAAACCGGTAAAATATACCTGATATGTTGAAAGTATCGATCCTT
65 TGACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTT
*
2037616 TTTATAAAAAAGATCAATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTAT
1 TTTATAAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTAT
* *
2037681 GACAAAACCAGTAAAATTTACTTGATATGTTGAAAGTATCGATCCTT
66 GACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTT
* * * *
2037728 TTTATAAAAAGGATCGATATTTTACAATATAACATGTAAAAATATGACAAAACCACTTTCATTAT
1 TTTATAAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTAT
** *
2037793 GACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATAAATACTT
66 GACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTT
*
2037840 TTTATAAAAATGTATCGATACTTT
1 TTTATAAAAAAG-ATCGATACTTT
2037864 GTTGAAAGTT
Statistics
Matches: 326, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
109 45 0.14
110 5 0.02
112 212 0.65
113 64 0.20
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (112 bp):
TTTATAAAAAAGATCGATACTTTACAATATAACAGGTAAAAATATGACAAAACCAGTTTCATTAT
GACAAAACCGGTAAAATTTACCTGATATGTTGAAAGTATCGATCCTT
Found at i:2039590 original size:26 final size:26
Alignment explanation
Indices: 2039554--2039603 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2039544 AACCTGTCAG
2039554 CCAAACTATTTCTGCAACAGTTACAA
1 CCAAACTATTTCTGCAACAGTTACAA
*
2039580 CCAAACTATTTCTGCAGCAGTTAC
1 CCAAACTATTTCTGCAACAGTTAC
2039604 TGCCATACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (26 bp):
CCAAACTATTTCTGCAACAGTTACAA
Found at i:2039613 original size:26 final size:26
Alignment explanation
Indices: 2039551--2039613 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
2039541 ATAAACCTGT
2039551 CAGCCAAACTATTTCTGCAACAGTTA
1 CAGCCAAACTATTTCTGCAACAGTTA
* *
2039577 CAACCAAACTATTTCTGCAGCAGTTA
1 CAGCCAAACTATTTCTGCAACAGTTA
* *
2039603 CTGCCATACTA
1 CAGCCAAACTA
2039614 CAGTATCATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (26 bp):
CAGCCAAACTATTTCTGCAACAGTTA
Found at i:2045457 original size:199 final size:196
Alignment explanation
Indices: 2045090--2045806 Score: 881
Period size: 199 Copynumber: 3.6 Consensus size: 196
2045080 AGCGCCTATA
* * * * * * *
2045090 TTGACCTATTTTATAAGTAAACCAGTATATTTATACAGTAACATTGCAAATTTTCCTATTACATT
1 TTGACCTATTTTCTCA-TAAACCGGTATATTTATACGGTTACATTGTAAATTTACCTATTACATT
* * * * * *
2045155 ATAATTATTGGTTTCGATATTTTTTGGATCGATACAATTT--GAAATGTATCGACACTTTATACG
65 ATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGCG
* * * *
2045218 TGCACCTCGTTGGGCATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAAAGTGTTGATACAT
129 TGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAA-TTAACAAGTGTCGATACAT
2045283 TAT-
193 TATG
* * * * *
2045286 TTAGACCTATTTTCTCATAAAGCCGATATATTTCTATCGGGTACATTGTAAATTTACCTATCATA
1 TT-GACCTATTTTCTCATAAA-CCGGTATATTTATA-CGGTTACATTGTAAATTTACCTATTACA
* *
2045351 TTGTAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGT
63 TTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGC
*
2045416 GTGCACCT-GTTTGGCATTCATTATGGACAAAATGTATCGACACAAATTTAACAAGTGTCGATAC
128 GTGCACCTCGTTTGGCATTCATTCTGGACAAAA-GTATCGACACAAA-TTAACAAGTGTCGATAC
*
2045480 TTTATG
191 ATTATG
* * *
2045486 CTGACCTATTTTCTCATAAAACAGGTATATTTATACCGGTTACATTGTAAATTTACATATTACAT
1 TTGACCTATTTTCTCAT-AAACCGGTATATTTATA-CGGTTACATTGTAAATTTACCTATTACAT
2045551 TATAATTATCGGTTTCGAT-TTTATTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGC
64 TATAATTATCGGTTTCGATGTTT-TTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGC
** * *
2045615 GTGCAATTCATTTGGGCATTCATTCTGGACAATAAGTATCGACACAAATTGCACAAGTGTCGATA
128 GTGCACCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACACAAATT-AACAAGTGTCGATA
2045680 CATTATG
190 CATTATG
* * * * *
2045687 TTGACTTGTTTTCTAATTAACCGGTATATTTATACTGGTTACATTGTTAATTTACCTATTACATT
1 TTGACCTATTTTCTCATAAACCGGTATATTTATAC-GGTTACATTGTAAATTTACCTATTACATT
*
2045752 ATAATTATTGGTTTCGATGTTTTTTGGG-TCGATACTTTTAGA-AAATGTATCGACA
65 ATAATTATCGGTTTCGATG-TTTTTGGGATCGATACTTTTA-ATAAATGTATCGACA
2045807 TATATTTAGG
Statistics
Matches: 451, Mismatches: 53, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
196 6 0.01
197 26 0.06
198 78 0.17
199 175 0.39
200 93 0.21
201 68 0.15
202 5 0.01
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (196 bp):
TTGACCTATTTTCTCATAAACCGGTATATTTATACGGTTACATTGTAAATTTACCTATTACATTA
TAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTG
CACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAATTAACAAGTGTCGATACATTAT
G
Found at i:2049396 original size:200 final size:199
Alignment explanation
Indices: 2048957--2049912 Score: 1190
Period size: 200 Copynumber: 4.8 Consensus size: 199
2048947 TACGTTATTT
* **
2048957 AAAAA-TATCGACACAAATT-TAAAAGTGTTGATACATTATGTTGATATATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAATTCTAAAAGTGTCGATACATTATGTTGACCTATTCTCTCATAAAACC
* * *
2049020 GGTATATTTATATCGGTTACATTGTAAATTTACCTATTACGTTATAATTATCAGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* ** * * * * *
2049085 TTGGGATCGACACAATTT-CAAATGTATCGACACTTTGTGCCTGCACCCCGTTTGGCATTCATTC
131 TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATACGTGCA-CCCTTTTGGCATTCATTC
2049149 TGGAC
195 TGGAC
* * *
2049154 AAAATGTATCGACACAAA-TCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAAC
1 AAAAAGTATCGACACAAATTCTAAAA-GTGTCGATACATTATGTTGACCTATTCTCTCATAAAAC
* * * *
2049218 CGGTAAATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAGTTATCGGTTTCGATATT
65 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
2049283 TTTGGGA-CTGATACTTTTTAAAAATGTATCGACACTTTATACGTGCAACCCTTTTGGCATTCAT
130 TTTGGGATC-GATACTTTTTAAAAATGTATCGACACTTTATACGTGC-ACCCTTTTGGCATTCAT
*
2049347 TTTGGAC
193 TCTGGAC
* * * *
2049354 AAAAAGTATCGACACAACTTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAATTCTAAAAGTGTCGATACATTATGTTGACCTATTCTCTCATAAAACC
* *
2049419 GGTATAGTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * * * * *
2049484 CTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCAATCATTC
131 TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATACGTGCACCCTTTT-GGCATTCATTC
2049549 TGGAC
195 TGGAC
* * * *
2049554 AAAAAGTATCGACACAAAATT-TAAAAGTGTCGACACATTACGTAGACCTATTCTCACATAAAAC
1 AAAAAGTATCGACAC-AAATTCTAAAAGTGTCGATACATTATGTTGACCTATTCTCTCATAAAAC
* * ** * * **
2049618 CGGTATATTTATACCAGTTATATTACAAAATTAACTATTACATTATAATTATATAGTTTCGATGT
65 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-CGGTTTCGATGT
2049683 TTTTGGGATCGATACTTTTTAAAAATGTATCGACAC-TT-TAC--G------TTTGGCATTCATT
129 TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATACGTGCACCCTTTTGGCATTCATT
*
2049738 TTGGAC
194 CTGGAC
* * * * * * * *
2049744 AAAAAGCATCGACACAAATTCTATAAGTATCGATACATTACGTT-ATCTATTTTCTCAAAAAAAT
1 AAAAAGTATCGACACAAATTCTAAAAGTGTCGATACATTATGTTGACCTATTCTCTC-ATAAAAC
* *
2049808 TGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTT
65 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
*
2049873 TTTGGGATCGATACTTTTTAAACATGTATCGACACTTTAT
130 TTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTAT
2049913 GTGAAACTTT
Statistics
Matches: 658, Mismatches: 86, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
189 59 0.09
190 98 0.15
191 4 0.01
197 5 0.01
198 18 0.03
199 114 0.17
200 306 0.47
201 54 0.08
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTCTAAAAGTGTCGATACATTATGTTGACCTATTCTCTCATAAAACC
GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATACGTGCACCCTTTTGGCATTCATTCT
GGAC
Found at i:2049871 original size:390 final size:391
Alignment explanation
Indices: 2048963--2049913 Score: 1243
Period size: 390 Copynumber: 2.4 Consensus size: 391
2048953 ATTTAAAAAT
* *
2048963 ATCGACACAAATT-TAAAAGTGTTGATACATTATGTTGATATATTCTCTCATAAAACCGGTATAT
1 ATCGACACAAATTCTAAAAGTGTCGATACATTATGTT-ATCTATTCTCTCATAAAACCGGTATAT
* * *
2049027 TTATATCGGTTACATTGTAAATTTACCTATTACGTTATAATTATCAGTTTCGATGTTTTTGGGAT
65 TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGAT
* ** * * * *
2049092 CGACACAATTTCAAATGTATCGACACTTTGTGCCTGCACCCCGTTTGGCATTCATTCTGGACAAA
130 CGATACTTTTTAAAATGTATCGACACTTTATGCCTGCACCCAGTTTGGCAATCATTCTGGACAAA
* * * * * *
2049157 ATGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGT
195 AAGTATCGACACAAATCTAAAACGTGTCGACACATTACGTACACCTATTCTCACATAAAACCGGT
** * * * *
2049222 AAATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAGTTATCGGTTTCGATATTTTTG
260 AAATTTATACCAGTTACATTACAAAATTAACTATTACATTATAATTATCAGTTTCGATATTTTTG
2049287 GGACTGATACTTTTTAAAAATGTATCGACACTTTATACGTGCAACCCTTTTGGCATTCATTTTGG
325 GGACTGATACTTTTTAAAAATGTATCGACACTTTATACG-G-----C-TTTGGCATTCATTTTGG
*
2049352 ACAAAAAGT
383 ACAAAAAGC
* * * * * *
2049361 ATCGACACAACTTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTATAG
1 ATCGACACAAATTCTAAAAGTGTCGATACATTATGT-TATCTATTCTCTCATAAAACCGGTATAT
* * *
2049426 TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTAGGAT
65 TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGAT
* * *
2049491 CGATACTTTTTATAAATGTATCGACACTTTATGCGTTCA-CCATTTTGGGCAATCATTCTGGACA
130 CGATACTTTTTA-AAATGTATCGACACTTTATGCCTGCACCCAGTTT-GGCAATCATTCTGGACA
* *
2049555 AAAAGTATCGACACAAAATTTAAAA-GTGTCGACACATTACGTAGACCTATTCTCACATAAAACC
193 AAAAGTATCGACAC-AAATCTAAAACGTGTCGACACATTACGTACACCTATTCTCACATAAAACC
* * * *
2049619 GGTATATTTATACCAGTTATATTACAAAATTAACTATTACATTATAATTATATAGTTTCGATGTT
257 GGTAAATTTATACCAGTTACATTACAAAATTAACTATTACATTATAATTAT-CAGTTTCGATATT
2049684 TTTGGGA-TCGATACTTTTTAAAAATGTATCGACAC-TT-TAC-G-TTTGGCATTCATTTTGGAC
321 TTTGGGACT-GATACTTTTTAAAAATGTATCGACACTTTATACGGCTTTGGCATTCATTTTGGAC
2049744 AAAAAGC
385 AAAAAGC
* * * * * **
2049751 ATCGACACAAATTCTATAAGTATCGATACATTACGTTATCTATTTTCTCAAAAAAATTGGTATAT
1 ATCGACACAAATTCTAAAAGTGTCGATACATTATGTTATCTATTCTCTC-ATAAAACCGGTATAT
*
2049816 TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTGGGAT
65 TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGAT
2049881 CGATACTTTTTAAACATGTATCGACACTTTATG
130 CGATACTTTTTAAA-ATGTATCGACACTTTATG
2049914 TGAAACTTTA
Statistics
Matches: 485, Mismatches: 59, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
389 12 0.02
390 158 0.33
397 1 0.00
398 12 0.02
399 118 0.24
400 132 0.27
401 52 0.11
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (391 bp):
ATCGACACAAATTCTAAAAGTGTCGATACATTATGTTATCTATTCTCTCATAAAACCGGTATATT
TATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATC
GATACTTTTTAAAATGTATCGACACTTTATGCCTGCACCCAGTTTGGCAATCATTCTGGACAAAA
AGTATCGACACAAATCTAAAACGTGTCGACACATTACGTACACCTATTCTCACATAAAACCGGTA
AATTTATACCAGTTACATTACAAAATTAACTATTACATTATAATTATCAGTTTCGATATTTTTGG
GACTGATACTTTTTAAAAATGTATCGACACTTTATACGGCTTTGGCATTCATTTTGGACAAAAAG
C
Found at i:2051274 original size:24 final size:23
Alignment explanation
Indices: 2051247--2051310 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
2051237 AGTGGAGCCA
2051247 AAATTTATATCGAAATTCAAACTC
1 AAATTTATAT-GAAATTCAAACTC
* * *
2051271 AAATTAAAATTAAAATTCAAACTC
1 AAATTTATA-TGAAATTCAAACTC
*
2051295 CAATTATATATGAAAT
1 AAATT-TATATGAAAT
2051311 GAATTTGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
24 28 0.90
25 3 0.10
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (23 bp):
AAATTTATATGAAATTCAAACTC
Found at i:2052603 original size:12 final size:12
Alignment explanation
Indices: 2052586--2052624 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
2052576 ACTTGTTTGG
*
2052586 ATCATCATAATC
1 ATCATCATATTC
*
2052598 ATCATCATCTTC
1 ATCATCATATTC
*
2052610 ATCGTCATATTC
1 ATCATCATATTC
2052622 ATC
1 ATC
2052625 TTTATTGACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (12 bp):
ATCATCATATTC
Found at i:2054372 original size:149 final size:149
Alignment explanation
Indices: 2054158--2054427 Score: 387
Period size: 149 Copynumber: 1.8 Consensus size: 149
2054148 TCTATTTTCT
* ** * * *
2054158 CATAAAACCGGTATATTTATATCGGGTACATTGGAAATTTACCTATTACATTATAATTACCGGTT
1 CATAAAACCGGTATATTTATACCAAGTACATTGAAAAATTACCTATTACATTATAATCACCGGTT
* * * *
2054223 TTGATGTTTTTGAGATCGACACTTTTTAAAAATGTATCGACACTTAATGGGTGCACCCATTTGGC
66 TCGATGTTTCTGAGATCAACACTTTTTAAAAATGTATCGACACTTAATGCGTGCACCCATTTGGC
2054288 ATTCATTTTGGACAAAAAG
131 ATTCATTTTGGACAAAAAG
* **
2054307 CATAAAACCGGTATATTTATACCAATTACATTGAAAAATTACCTATTACATTATAATCATGGGTT
1 CATAAAACCGGTATATTTATACCAAGTACATTGAAAAATTACCTATTACATTATAATCACCGGTT
* * * *
2054372 TCGATGTTTCTGGGATCAATACTTTTTATAAATGTATCGACACTTTATGCGTGCAC
66 TCGATGTTTCTGAGATCAACACTTTTTAAAAATGTATCGACACTTAATGCGTGCAC
2054428 TATTGTTTTG
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
149 104 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (149 bp):
CATAAAACCGGTATATTTATACCAAGTACATTGAAAAATTACCTATTACATTATAATCACCGGTT
TCGATGTTTCTGAGATCAACACTTTTTAAAAATGTATCGACACTTAATGCGTGCACCCATTTGGC
ATTCATTTTGGACAAAAAG
Found at i:2054713 original size:199 final size:200
Alignment explanation
Indices: 2054307--2055232 Score: 1133
Period size: 200 Copynumber: 4.5 Consensus size: 200
2054297 GGACAAAAAG
** *
2054307 CATAAAACCGGTATATTTATACCAATTACATTGA-AAAATTACCTATTACATTATAATCATGGGT
1 CATAAAACCGGTATATTTATACCGGTTACATT-ACAAAATTACCTATTACATTATAATTATGGGT
* *
2054371 TTCGATGTTTCTGGGATCAATACTTTTTATAAATGTATCGACACTTTATGCGTGCACTATTGTTT
65 TTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCA---TTT
* * * * * *
2054436 TGGGCATTCATTGTGGATAAAATGTATCGAC-GCATAATTAAAAAGTGTCGATACATTATGTAGA
127 TGGGCATTCATTCTGGACAAAAAGTATCGACACCA-ATTTCAAAAGTGTCGATACATTATGTAGA
2054500 CCTATTCTCA
191 CCTATTCTCA
* * *
2054510 CATAAAATCGCTATATTTATACCGGTTACATTACAAAATTACCTATTATATTATAATTATGGG-T
1 CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTT
* * * *
2054574 TCGATGTCTCTGGGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGG
66 TCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGG
* * **
2054639 CATTCATTCTGGACAAAAAGTATCGATACCAATTTTAAATTTGTCGATACATTATGTAGACCTAT
131 CATTCATTCTGGACAAAAAGTATCGACACCAATTTCAAAAGTGTCGATACATTATGTAGACCTAT
*
2054704 TTTCA
196 TCTCA
*
2054709 CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACTTATTACATTATAATTATGGGTT
1 CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTT
* * * * * *
2054774 TCGATGTCTT-TGGGATCGACACTTTTAAAAAATATATCGACACTTTATGGGTGCACCCTTTTGG
66 TCGATGT-TTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGG
* * * * * * *
2054838 GCATTCCTTCTGGACAAACAGTATCAACACAAATTCCATAAGTGTCGATACATTATGTAGACATA
130 GCATTCATTCTGGACAAAAAGTATCGACACCAATTTCAAAAGTGTCGATACATTATGTAGACCTA
*
2054903 TTCTCT
195 TTCTCA
* * * ** ** *
2054909 CATAAAATCGGTAAAGTTATTTCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTT
1 CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTT
* *
2054974 TCAATGTTTCTGGGATCAATACTTTTTTATAAATGTATCGACACTTTATGCGCTCACCATTTTGG
66 TCGATGTTTCTGGGATCGATAC-TTTTTATAAATGTATCGACACTTTATGCG----------T--
*
2055039 GCATTCATCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACATCAATTTCAAAAGTGTCGAT
118 GCA--C--CATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACCAATTTCAAAAGTGTCGAT
2055104 ACATTATGTAGACCTATTCTCA
179 ACATTATGTAGACCTATTCTCA
*
2055126 CA-AAAACCGGTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTT
1 CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTT
* * *
2055190 TCAATGTTTTTGGGGTCGATACTTTTTATAAATGTATCGACAC
66 TCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACAC
2055233 ATCTTTTTAC
Statistics
Matches: 618, Mismatches: 83, Indels: 32
0.84 0.11 0.04
Matches are distributed among these distances:
199 125 0.20
200 189 0.31
201 26 0.04
202 54 0.09
203 55 0.09
211 1 0.00
213 3 0.00
215 22 0.04
216 72 0.12
217 71 0.11
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (200 bp):
CATAAAACCGGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTT
TCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGG
CATTCATTCTGGACAAAAAGTATCGACACCAATTTCAAAAGTGTCGATACATTATGTAGACCTAT
TCTCA
Found at i:2055052 original size:16 final size:16
Alignment explanation
Indices: 2055031--2055062 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2055021 ATGCGCTCAC
2055031 CATTTTGGGCATTCAT
1 CATTTTGGGCATTCAT
2055047 CATTTTGGGCATTCAT
1 CATTTTGGGCATTCAT
2055063 TCTGGACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (16 bp):
CATTTTGGGCATTCAT
Found at i:2055595 original size:19 final size:19
Alignment explanation
Indices: 2055571--2055615 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
2055561 TACATACACA
2055571 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
2055590 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
2055609 AAAATTA
1 AAAATTA
2055616 ACCCTACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:2057427 original size:33 final size:33
Alignment explanation
Indices: 2057390--2057456 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
2057380 CCATCTTAAG
2057390 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
*
2057423 TTCACCCCTCAACACCTCATCTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
2057456 T
1 T
2057457 CCATCTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.48, G:0.00, T:0.30
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:2057515 original size:21 final size:21
Alignment explanation
Indices: 2057491--2057533 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2057481 CCATTATATA
2057491 TCTCAAGTGTCCCTTCGACTC
1 TCTCAAGTGTCCCTTCGACTC
* *
2057512 TCTCAAGTTTCTCTTCGACTC
1 TCTCAAGTGTCCCTTCGACTC
2057533 T
1 T
2057534 TGATTGTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.35, G:0.12, T:0.40
Consensus pattern (21 bp):
TCTCAAGTGTCCCTTCGACTC
Found at i:2057949 original size:22 final size:23
Alignment explanation
Indices: 2057921--2057976 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
2057911 AACCTGTATT
2057921 TATAATAAAAT-TTATAATTTTA
1 TATAATAAAATATTATAATTTTA
* *
2057943 TATAATAATTATATTATCATTTTA
1 TATAATAA-AATATTATAATTTTA
*
2057967 TATAAAAAAA
1 TATAATAAAA
2057977 CAAAAACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.29
23 3 0.11
24 17 0.61
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TATAATAAAATATTATAATTTTA
Found at i:2060241 original size:181 final size:182
Alignment explanation
Indices: 2059933--2060600 Score: 916
Period size: 181 Copynumber: 3.7 Consensus size: 182
2059923 TACGCGTACT
* * * * * *
2059933 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTATCGGTTTTGTCATTTCGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
** * * *
2059998 GGTTT-TCATATTTTTACCTGTTATATCGTTATGGATCAATACATTTTTATAAAGTATCGACACT
66 ATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
* *
2060062 TTATAGGCACTAAAACTGCTTCTCTTTTAAATTCACAAAGTACCGATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTA
*
2060114 TATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
* *
2060179 GTTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACATTGTTATAAAGT-TCGACACT
66 ATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
* * *
2060243 TTATAGACGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATATTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTA
* * *
2060295 TATTAAAGTATCGACGCTTTCAATATATCCGGTCACTCTATACCGATTTTGTCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
* * *
2060360 ATTTTGTTATAGTTTTACCTGTTATATCGTTGTGAATCGATACATTGTTATAAAGTATCGACACT
66 ATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
* * * * *
2060425 TTATAAGTGCTAAAACTGCTTTTCTTTTAAATTCACTAAGTTTCGATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTA
* * *
2060477 TATTAAAGTATCGACACTTTCAATATATCTGGTGTCGCT-T-TACCGGTTTTGT-CTTTACAAAA
1 TATTAAAGTATCGACACTTTCAATATATC-CG-GTCGCTCTATACCGGTTTTGTCCTTTA-GAGA
* * * * *
2060539 CCGATTTTGTCATATTTTTATCTGTTATATTGATGTGGATCGATATAGTT-TTATAAAATATC
63 CCGATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACA-TTGTTATAAAGTATC
2060601 AACATAAACC
Statistics
Matches: 434, Mismatches: 47, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
181 234 0.54
182 191 0.44
183 4 0.01
184 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
ATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTA
Found at i:2061605 original size:51 final size:51
Alignment explanation
Indices: 2061529--2061682 Score: 290
Period size: 51 Copynumber: 3.0 Consensus size: 51
2061519 TGCTTCCGTA
2061529 CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
1 CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
2061580 CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
1 CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
* *
2061631 CATGGCAGGTGGGGATGGATATCCCTGGACTGGAGTAGGGTACTGGGTGTG
1 CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
2061682 C
1 C
2061683 GAGGGAGACC
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 101 1.00
ACGTcount: A:0.16, C:0.13, G:0.46, T:0.25
Consensus pattern (51 bp):
CATGGCAGGTGGGGATGGGTATCCCTGGACTGGAGTAGGGTATTGGGTGTG
Found at i:2069421 original size:46 final size:46
Alignment explanation
Indices: 2069355--2069534 Score: 290
Period size: 46 Copynumber: 3.9 Consensus size: 46
2069345 TATAAAATCT
* *
2069355 CTTACCATTT-ATCCCATAAGCTCTTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
2069400 CTTACCGTTTAATACCATAAGCTCGTAAGTTTATTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
*
2069446 CTTACCATTTAATACCATAAGCTCGTAAGTTTATTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
2069492 CTTGCCATTTAATACCATAAGCTCGTAATCTTATTTTACCAAT
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAAT
2069535 TTATCATTTA
Statistics
Matches: 126, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 9 0.07
46 117 0.93
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (46 bp):
CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:2069431 original size:22 final size:22
Alignment explanation
Indices: 2069406--2069478 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
2069396 TATACTTACC
2069406 GTTTAATACCATAAGCTCGTAA
1 GTTTAATACCATAAGCTCGTAA
*
2069428 GTTTATTTTACCAATATA-CT--TACCA
1 GTTTA--ATACC-ATA-AGCTCGTA--A
2069453 -TTTAATACCATAAGCTCGTAA
1 GTTTAATACCATAAGCTCGTAA
2069474 GTTTA
1 GTTTA
2069479 TTTTACCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 20
0.64 0.03 0.33
Matches are distributed among these distances:
20 1 0.03
21 6 0.15
22 13 0.33
23 4 0.10
24 8 0.21
25 6 0.15
26 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (22 bp):
GTTTAATACCATAAGCTCGTAA
Found at i:2069440 original size:24 final size:24
Alignment explanation
Indices: 2069412--2069486 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
2069402 TACCGTTTAA
2069412 TACCATAAGCTCGTAAGTTTATTT
1 TACCATAAGCTCGTAAGTTTATTT
*
2069436 TACCAATATA-CT--TACCA-TTTA--A
1 TACC-ATA-AGCTCGTA--AGTTTATTT
2069458 TACCATAAGCTCGTAAGTTTATTT
1 TACCATAAGCTCGTAAGTTTATTT
2069482 TACCA
1 TACCA
2069487 ATATACTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 20
0.64 0.03 0.33
Matches are distributed among these distances:
20 1 0.03
21 6 0.15
22 8 0.21
23 4 0.10
24 13 0.33
25 6 0.15
26 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (24 bp):
TACCATAAGCTCGTAAGTTTATTT
Found at i:2069502 original size:24 final size:24
Alignment explanation
Indices: 2069429--2069502 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
2069419 AGCTCGTAAG
*
2069429 TTTATTTTACCAATATACTTACCA
1 TTTATTTTACCAATATACTTGCCA
* * **
2069453 TTTA--ATACC-ATA-AGCTCGTAA
1 TTTATTTTACCAATATA-CTTGCCA
2069474 GTTTATTTTACCAATATACTTGCCA
1 -TTTATTTTACCAATATACTTGCCA
2069499 TTTA
1 TTTA
2069503 ATACCATAAG
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
20 1 0.03
21 6 0.17
22 8 0.23
24 12 0.34
25 7 0.20
26 1 0.03
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (24 bp):
TTTATTTTACCAATATACTTGCCA
Found at i:2075541 original size:20 final size:20
Alignment explanation
Indices: 2075518--2075561 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
2075508 ATATTCATTC
*
2075518 ATATATATATATATTAATAT
1 ATATATATATATATTAACAT
2075538 ATATATATATATATTAACAT
1 ATATATATATATATTAACAT
2075558 ATAT
1 ATAT
2075562 TCATGTACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATATATATATATTAACAT
Found at i:2075559 original size:10 final size:10
Alignment explanation
Indices: 2075524--2075562 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
2075514 ATTCATATAT
2075524 ATATATATTA
1 ATATATATTA
2075534 ATATATA-TA
1 ATATATATTA
2075543 TATATATATTA
1 -ATATATATTA
*
2075554 ACATATATT
1 ATATATATT
2075563 CATGTACATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (10 bp):
ATATATATTA
Found at i:2075561 original size:2 final size:2
Alignment explanation
Indices: 2075518--2075551 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
2075508 ATATTCATTC
2075518 AT AT AT AT AT AT AT -T A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2075552 TAACATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2076018 original size:15 final size:13
Alignment explanation
Indices: 2075972--2076018 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
2075962 CATTACACAT
2075972 TCACATA-TTCATA
1 TCACATAGTTC-TA
*
2075985 TCACATAGTTCTT
1 TCACATAGTTCTA
2075998 TCACATAGCTCTCTA
1 TCACATAG-T-TCTA
2076013 TCACAT
1 TCACAT
2076019 TTCATATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 16 0.55
14 4 0.14
15 9 0.31
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (13 bp):
TCACATAGTTCTA
Found at i:2076653 original size:15 final size:15
Alignment explanation
Indices: 2076633--2076662 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2076623 AGACTGAAAG
2076633 AAAGATTTATTCCAT
1 AAAGATTTATTCCAT
2076648 AAAGATTTATTCCAT
1 AAAGATTTATTCCAT
2076663 TTCCCATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (15 bp):
AAAGATTTATTCCAT
Found at i:2079506 original size:3 final size:3
Alignment explanation
Indices: 2079498--2079523 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2079488 GGTGATGCAA
2079498 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
2079524 TTAGAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:2081181 original size:2 final size:2
Alignment explanation
Indices: 2081174--2081209 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
2081164 TCAATTACTA
2081174 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2081210 TTTTGATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2081724 original size:7 final size:7
Alignment explanation
Indices: 2081712--2081736 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2081702 ATCTGAGTAA
2081712 AAAAGTT
1 AAAAGTT
2081719 AAAAGTT
1 AAAAGTT
2081726 AAAAGTT
1 AAAAGTT
2081733 AAAA
1 AAAA
2081737 ATTATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (7 bp):
AAAAGTT
Found at i:2083892 original size:6 final size:6
Alignment explanation
Indices: 2083881--2083910 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
2083871 GTCCGTCTCG
2083881 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
2083911 CTTGAGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:2094011 original size:89 final size:89
Alignment explanation
Indices: 2093908--2094084 Score: 275
Period size: 89 Copynumber: 2.0 Consensus size: 89
2093898 CAAGTGTGTG
*
2093908 TATATATATGAGATATAATTATGCTAGACAATGTAAAACTATTTTAATTTTACATAGATTTA-GA
1 TATATATATGAGATAGAATTATGCTAGACAATGTAAAACTATTTTAATTTTACATAGATTTAGGA
* *
2093972 ACTATTAAATGATTGAATATATATA
66 A-TATTAAATGAGTGAAAATATATA
* * *
2093997 TATATATATGAGATAGAATTATGTTAGATAATGTAAAACTATTTTAGTTTTACATAGATTTAGGA
1 TATATATATGAGATAGAATTATGCTAGACAATGTAAAACTATTTTAATTTTACATAGATTTAGGA
*
2094062 ATGTTAAATGAGTGAAAATATAT
66 ATATTAAATGAGTGAAAATATAT
2094085 GGATGAGATT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 77 0.96
90 3 0.04
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.40
Consensus pattern (89 bp):
TATATATATGAGATAGAATTATGCTAGACAATGTAAAACTATTTTAATTTTACATAGATTTAGGA
ATATTAAATGAGTGAAAATATATA
Found at i:2102833 original size:58 final size:58
Alignment explanation
Indices: 2102434--2102822 Score: 573
Period size: 58 Copynumber: 6.7 Consensus size: 58
2102424 TTTCCCATAT
* * * * * *
2102434 GGAAATTCATACACTTAGTATGAATCTCTTAACATATTGTATACAAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
*
2102492 AGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
* * *
2102550 GGAAATTCATACACTTAGTACGAATTTCTTAACTTTTTACACACGAAATGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
* *
2102608 GGAAATTCATACACTTAGTACGAATTTCTTAACTTTTTGCACACGAAGTGTCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
* * * **
2102666 AGAAATTCATACACTTAGTATGGATTTCTTAACTTTTAGCACACGAAGTGCTAAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
* *
2102724 AGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGTAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
* *
2102782 GGAAATAT-ATACACTTAGTATGATTTTTTTAACTTTTTGCA
1 GGAAAT-TCATACACTTAGTATGAATTTCTTAACTTTTTGCA
2102823 TACTTAGTGC
Statistics
Matches: 301, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
58 300 1.00
59 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (58 bp):
GGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACGAAGTGCCCAATAC
Found at i:2103322 original size:19 final size:19
Alignment explanation
Indices: 2103250--2103324 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 19
2103240 TCGATGTTAC
*
2103250 ATGGTATCGATATCCTTACC-
1 ATGGTATCGATA-CCCT-CCT
* *
2103270 ATGATATCGATACTACCATACT
1 ATGGTATCGATAC--CC-TCCT
2103292 ATGGTA-CTGATACCCTCCT
1 ATGGTATC-GATACCCTCCT
2103311 ATGGTATCGATACC
1 ATGGTATCGATACC
2103325 ATTTTTGCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 16 0.36
20 14 0.32
21 3 0.07
22 11 0.25
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (19 bp):
ATGGTATCGATACCCTCCT
Found at i:2103385 original size:20 final size:20
Alignment explanation
Indices: 2103362--2103399 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2103352 TCTATACCTT
*
2103362 CCCTTCGGTATCGATACTCC
1 CCCTTAGGTATCGATACTCC
2103382 CCCTTAGGTATCGATACT
1 CCCTTAGGTATCGATACT
2103400 GATAATCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.34, G:0.16, T:0.32
Consensus pattern (20 bp):
CCCTTAGGTATCGATACTCC
Found at i:2107165 original size:45 final size:45
Alignment explanation
Indices: 2107111--2107213 Score: 197
Period size: 45 Copynumber: 2.3 Consensus size: 45
2107101 AATTTGGAAC
*
2107111 TGAACTGATTTTGGAAACTTTATCATCGTTTCATGACCTTATTGA
1 TGAATTGATTTTGGAAACTTTATCATCGTTTCATGACCTTATTGA
2107156 TGAATTGATTTTGGAAACTTTATCATCGTTTCATGACCTTATTGA
1 TGAATTGATTTTGGAAACTTTATCATCGTTTCATGACCTTATTGA
2107201 TGAATTGATTTTG
1 TGAATTGATTTTG
2107214 AAATCTAAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (45 bp):
TGAATTGATTTTGGAAACTTTATCATCGTTTCATGACCTTATTGA
Found at i:2108293 original size:29 final size:29
Alignment explanation
Indices: 2108208--2108284 Score: 154
Period size: 29 Copynumber: 2.7 Consensus size: 29
2108198 CGATGTGTAT
2108208 ATATTAAAAATATTATTTGAAATGATAAG
1 ATATTAAAAATATTATTTGAAATGATAAG
2108237 ATATTAAAAATATTATTTGAAATGATAAG
1 ATATTAAAAATATTATTTGAAATGATAAG
2108266 ATATTAAAAATATTATTTG
1 ATATTAAAAATATTATTTG
2108285 TTATTATAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (29 bp):
ATATTAAAAATATTATTTGAAATGATAAG
Found at i:2114151 original size:23 final size:21
Alignment explanation
Indices: 2114112--2114154 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
2114102 CAAGAATGAT
2114112 AAAATAAATATAAAAAGTATA
1 AAAATAAATATAAAAAGTATA
*
2114133 AAAATATAATATGATAAAGTAT
1 AAAATA-AATAT-AAAAAGTAT
2114155 GAACCAAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 5 0.26
23 8 0.42
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (21 bp):
AAAATAAATATAAAAAGTATA
Found at i:2115026 original size:24 final size:24
Alignment explanation
Indices: 2114999--2115050 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
2114989 CGTTCATTTA
*
2114999 CGTTCGTGAACGTTCGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
* ** *
2115023 CGTTTATGTTCGTTTGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
2115047 CGTT
1 CGTT
2115051 TATGTTTATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.13, G:0.27, T:0.50
Consensus pattern (24 bp):
CGTTCATGAACGTTCGGTTATGTT
Found at i:2115051 original size:24 final size:24
Alignment explanation
Indices: 2115009--2115056 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
2114999 CGTTCGTGAA
2115009 CGTTCGGTTATGTTCGTTTATGTT
1 CGTTCGGTTATGTTCGTTTATGTT
*
2115033 CGTTTGGTTATGTTCGTTTATGTT
1 CGTTCGGTTATGTTCGTTTATGTT
2115057 TATTCATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.08, C:0.10, G:0.25, T:0.56
Consensus pattern (24 bp):
CGTTCGGTTATGTTCGTTTATGTT
Found at i:2115067 original size:24 final size:24
Alignment explanation
Indices: 2115015--2115070 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
2115005 TGAACGTTCG
* **
2115015 GTTATGTTCGTTTATGTTCGTTTG
1 GTTATGTTCGTTTATGTTCATTCA
*
2115039 GTTATGTTCGTTTATGTTTATTCA
1 GTTATGTTCGTTTATGTTCATTCA
*
2115063 TTTATGTT
1 GTTATGTT
2115071 TAACCCAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.07, G:0.20, T:0.61
Consensus pattern (24 bp):
GTTATGTTCGTTTATGTTCATTCA
Found at i:2115870 original size:16 final size:16
Alignment explanation
Indices: 2115849--2115901 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
2115839 GGGTCTTCAA
2115849 CATTTATGTTCGTGTT
1 CATTTATGTTCGTGTT
*
2115865 CATTTATGTTCATGTT
1 CATTTATGTTCGTGTT
*
2115881 CGTTTATGTTCGT-TT
1 CATTTATGTTCGTGTT
2115896 -ATTTAT
1 CATTTAT
2115902 TAAATGAACG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 5 0.15
15 2 0.06
16 26 0.79
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.58
Consensus pattern (16 bp):
CATTTATGTTCGTGTT
Found at i:2116233 original size:3 final size:3
Alignment explanation
Indices: 2116225--2116261 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
2116215 TTAATATTCG
2116225 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
2116262 TTGGTAATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2124961 original size:55 final size:55
Alignment explanation
Indices: 2124803--2125333 Score: 798
Period size: 55 Copynumber: 9.7 Consensus size: 55
2124793 CTCCATAGTC
* *
2124803 CTTCAGAGAGTATAAGACTCGAACAATCTTTAACAATCGTGTCTG-CCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
2124857 CTTCAGAGAGTATAAGACTC--ACAATCTTCATCAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* *
2124910 CGTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2124965 CTTCAGAGAGTATAAGACCCGAACAATCTTCATCAATCGCGTCTGTCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * **
2125020 CTTCAGAGAGTATAAGACCCGAACAATCTTCAACAATCGTGTCCACCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2125075 CTTCAGAGAGTATAAGACTCAAACAATCTTCAACGATCGCGTCTGCCCTCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2125130 CTTCAGAGAGTATAAGACCCGAACAATCTTCAACAATCGTGTCCGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2125185 CCTCAGAGAGTATAAGACTCGAACAATCTTCAACTATCGCGTCTCCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2125240 CTTCAGAGAGTATAAGACTTGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
2125295 CTTCAGAGAGTATGAGACTTGAACAATCTTCAACGATCG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCG
2125334 TAGGGAACCT
Statistics
Matches: 433, Mismatches: 41, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
52 20 0.05
53 28 0.06
54 20 0.05
55 365 0.84
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (55 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
Found at i:2126355 original size:9 final size:9
Alignment explanation
Indices: 2126341--2126374 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
2126331 TTTGTTTCTC
2126341 TTTTTTTTA
1 TTTTTTTTA
2126350 TTTTTTTTA
1 TTTTTTTTA
*
2126359 TTTTTTTCA
1 TTTTTTTTA
2126368 TTTTTTT
1 TTTTTTT
2126375 CCATTCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:2126396 original size:15 final size:15
Alignment explanation
Indices: 2126362--2126401 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
2126352 TTTTTTATTT
2126362 TTTTCATTTTTTTCC
1 TTTTCATTTTTTTCC
*
2126377 -ATTCATTTTTTTCC
1 TTTTCATTTTTTTCC
2126391 TTTTCACTTTT
1 TTTTCA-TTTT
2126402 CTTCAAGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 13 0.62
15 4 0.19
16 4 0.19
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCATTTTTTTCC
Found at i:2136375 original size:16 final size:16
Alignment explanation
Indices: 2136354--2136391 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
2136344 AACCTTATTC
2136354 ACATGATATCTACCCA
1 ACATGATATCTACCCA
2136370 ACATGATATCTACCCA
1 ACATGATATCTACCCA
2136386 ATCATG
1 A-CATG
2136392 CTTTAGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (16 bp):
ACATGATATCTACCCA
Found at i:2141867 original size:22 final size:22
Alignment explanation
Indices: 2141839--2141882 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2141829 CTAAGAGAGT
2141839 TAATGAACAACTGTTATAGTCA
1 TAATGAACAACTGTTATAGTCA
2141861 TAATGAACAACTGTTATAGTCA
1 TAATGAACAACTGTTATAGTCA
2141883 ATTTCACACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (22 bp):
TAATGAACAACTGTTATAGTCA
Found at i:2143628 original size:134 final size:133
Alignment explanation
Indices: 2143459--2144254 Score: 888
Period size: 134 Copynumber: 6.0 Consensus size: 133
2143449 GCGAATCGAA
* * * *
2143459 CTCGATTTAATCTTTCCT-AAGT-GACAGTGGAATGAATCAACATCCCCATATATGATTTTCCCT
1 CTCGATTCAATC-TTCCTGAA-TAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCT
* * *
2143522 CAAGAAAAAGCAGAACATATCCAT-TTTTCTCAATATTTGATATTCCCTGAGTAACAGTGGAACA
64 CAAGAAGAAGCAGAA-ATATCCATCTCTT-TCAAGATTTGATATTCCCTGAGTAACAGTGGAACA
2143586 AGTCTGC
127 AGTCTGC
* * * * *
2143593 CTCGATTCAATATTCCCT-AATAGGCAGTGGAATGAATCAACGTCCTCATATCTGATTTTCCTTC
1 CTCGATTCAATCTT-CCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTC
* * * * *
2143657 AAGAAGAAGCGGAATAGATCCCTCTCTTTCAAGATTTGATATTCTCTGAGTAACAATGGAACAAG
65 AAGAAGAAGCAGAA-ATATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAG
* **
2143722 TTTAT
129 TCTGC
* * * * *
2143727 CTCGATTCAATCTTTCTGAGT-GATAATGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
1 CTCGATTCAATCTTCCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTCA
2143791 AGAAGAAGC-GAAATAAATCTC-TCTCTTTCAAGATTTGATA-T-CCTGAGTAACAGTGGAACAA
66 AGAAGAAGCAGAAAT--ATC-CATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAA
* *
2143852 GTTTGT
128 GTCTGC
* * *
2143858 CTCAATTCAATCTTCCCTAAATA-ACAGTAGAATGAATCAACGTCCCCAGATCTGATTTTCCCTC
1 CTCGATTCAATCTT-CCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTC
* * * * * *
2143922 AAGAATAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCTCTAAGTAGCAGTGGAACAAG
65 AAGAAGAAGCAGAA-ATATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAG
2143987 TCTGC
129 TCTGC
*
2143992 CTCAATTCAATCTTTCCTGAAT-GACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTC
1 CTCGATTCAATC-TTCCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTC
* *
2144056 AAGAAGAAG-TGAAATTGATCCATCTCTTTCAAGATTTTGGTATTCCCTGAGT-A-AGTGGAACA
65 AAGAAGAAGCAGAAA-T-ATCCATCTCTTTCAAGA-TTTGATATTCCCTGAGTAACAGTGGAACA
*
2144118 AGTCTAC
127 AGTCTGC
** * * *
2144125 CTCGATTCAATCTTCCTGAGCA-ACAGTGAAAAGAATCAA-GTCCCCAGATCTGA-TTTCTCTCA
1 CTCGATTCAATCTTCCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTCA
** * *
2144187 AGAAGAAGTGGAATAGATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTAGAACAAGT
66 AGAAGAAGCAGAA-ATATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAGT
2144252 CTG
130 CTG
2144255 TAATACCCCA
Statistics
Matches: 567, Mismatches: 71, Indels: 51
0.82 0.10 0.07
Matches are distributed among these distances:
129 16 0.03
130 34 0.06
131 68 0.12
132 100 0.18
133 103 0.18
134 227 0.40
135 19 0.03
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (133 bp):
CTCGATTCAATCTTCCTGAATAGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTCA
AGAAGAAGCAGAAATATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAGTC
TGC
Found at i:2143913 original size:265 final size:264
Alignment explanation
Indices: 2143459--2144253 Score: 1000
Period size: 265 Copynumber: 3.0 Consensus size: 264
2143449 GCGAATCGAA
* * * *
2143459 CTCGATTTAATCTTTCCTAAGTGACAGTGGAATGAATCAACATCCCCATATATGATTTTCCCTCA
1 CTCGATTCAATCTTTCCTGAGTGACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
* * *
2143524 AGAAAAAGCAGAACATATCCAT-TTTTCTCAATATTTGATATTCCCTGAGTAACAGTGGAACAAG
66 AGAAGAAGC-GAA-ATATCCATCTCTT-TCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAG
* * * *
2143588 TCTGCCTCGATTCAATATTCCCTAATAGGCAGTGGAATGAATCAACGTCCTCATATCTGATTTTC
128 TCTGCCTCGATTCAATCTTCCCTAATA-ACAGT-GAATGAATCAACGTCCCCAGATCTGATTTTC
* *
2143653 CTTCAAGAAGAAGCGGAATAGATCCCTCTCTTTCAAGATTTGATATTCTCTGAGTAACAATGGAA
191 CTTCAAGAAGAAGCGGAATAGATCCATCTCTTTCAAGATTTGATATTCTCTGAGTAACAGTGGAA
* *
2143718 CAAGTTTAT
256 CAAGTCTAC
* *
2143727 CTCGATTCAATCTTT-CTGAGTGATAATGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
1 CTCGATTCAATCTTTCCTGAGTGACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
2143791 AGAAGAAGCGAAATAAATCTC-TCTCTTTCAAGATTTGATA-T-CCTGAGTAACAGTGGAACAAG
66 AGAAGAAGCGAAAT--ATC-CATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAG
* * *
2143853 TTTGTCTCAATTCAATCTTCCCTAAATAACAGTAGAATGAATCAACGTCCCCAGATCTGATTTTC
128 TCTGCCTCGATTCAATCTTCCCT-AATAACAGT-GAATGAATCAACGTCCCCAGATCTGATTTTC
* * ** * * * *
2143918 CCTCAAGAATAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCTCTAAGTAGCAGTGGAA
191 CTTCAAGAAGAAGCGGAATAGATCCATCTCTTTCAAGATTTGATATTCTCTGAGTAACAGTGGAA
*
2143983 CAAGTCTGC
256 CAAGTCTAC
* * *
2143992 CTCAATTCAATCTTTCCTGAATGACAGTGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTTCCTGAGTGACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
* *
2144057 AGAAGAAGTGAAATTGATCCATCTCTTTCAAGATTTTGGTATTCCCTGAGT-A-AGTGGAACAAG
66 AGAAGAAGCGAAA-T-ATCCATCTCTTTCAAGA-TTTGATATTCCCTGAGTAACAGTGGAACAAG
* ** *
2144120 TCTACCTCGATTCAATCTT-CCTGAGCAACAGTGAAAAGAATCAA-GTCCCCAGATCTGA-TTT-
128 TCTGCCTCGATTCAATCTTCCCT-AATAACAGTG-AATGAATCAACGTCCCCAGATCTGATTTTC
* * *
2144181 CTCTCAAGAAGAAGTGGAATAGATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTAGA
191 CT-TCAAGAAGAAGCGGAATAGATCCATCTCTTTCAAGATTTGATATTCTCTGAGTAACAGTGGA
2144246 ACAAGTCT
255 ACAAGTCT
2144254 GTAATACCCC
Statistics
Matches: 457, Mismatches: 57, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
263 1 0.00
264 63 0.14
265 166 0.36
266 99 0.22
267 101 0.22
268 20 0.04
269 7 0.02
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (264 bp):
CTCGATTCAATCTTTCCTGAGTGACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCA
AGAAGAAGCGAAATATCCATCTCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACAAGTCT
GCCTCGATTCAATCTTCCCTAATAACAGTGAATGAATCAACGTCCCCAGATCTGATTTTCCTTCA
AGAAGAAGCGGAATAGATCCATCTCTTTCAAGATTTGATATTCTCTGAGTAACAGTGGAACAAGT
CTAC
Found at i:2146463 original size:3 final size:3
Alignment explanation
Indices: 2146450--2146524 Score: 82
Period size: 3 Copynumber: 25.3 Consensus size: 3
2146440 TTTGTATATA
*
2146450 TAT TA- TAT TAT TAT TAT TAT TAT TAC TAT ATAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * *
2146495 TAT TAT TGT TGT TGT TGT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
2146525 TTTTGGCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
2 4 0.06
3 58 0.89
4 3 0.05
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:2146479 original size:28 final size:28
Alignment explanation
Indices: 2146446--2146501 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 28
2146436 AATATTTGTA
2146446 TATATATTATATTATTATTATTATTATTAC
1 TATATA-T-TATTATTATTATTATTATTAC
2146476 TATATATTATTATTATTATTATTATT
1 TATATATTATTATTATTATTATTATT
2146502 GTTGTTGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 19 0.73
29 1 0.04
30 6 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
TATATATTATTATTATTATTATTATTAC
Found at i:2151502 original size:131 final size:131
Alignment explanation
Indices: 2151301--2151658 Score: 459
Period size: 131 Copynumber: 2.7 Consensus size: 131
2151291 TCGATATTGA
* * *
2151301 AAATAGTAATATCTCTTCATTTC-AGTTGGAGTAATAAACGACTACTTTAAGACATGAGAGATCA
1 AAATAGTAATATCTCTTCATTTCGA-TTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGATCA
* * *
2151365 TTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCTCTCGAATCAATATTGATTTTTAAGA
65 TTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGA
2151430 CAG
130 -AG
* * * * *
2151433 -AATAGTGATATATCTTCATTTCGATTTGAGTAATAAATGAATGCTTTAAGGCATGAGAGGTCAT
1 AAATAGTAATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGATCAT
* * * * *
2151497 ATATTCTCAATTGGAAATCATTAGATATTATCGTTTTCACTCAAATCAATATTGAATTTTAAGAT
66 TTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGAA
2151562 G
131 G
* * * * * *
2151563 AAATAGTTATATCTTTTCATTTCGGTTGGAGTAATAAATGACTGCTCTAAGGCTTGAGAGATTAT
1 AAATAGTAATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGATCA-
* *
2151628 TTTATGCTCGATTGGAAATAATTAAATATTA
65 TTTATTCTCGATTGGAAATAATTAGATATTA
2151659 TTATTTTCTC
Statistics
Matches: 192, Mismatches: 31, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
130 1 0.01
131 164 0.85
132 27 0.14
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (131 bp):
AAATAGTAATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGATCAT
TTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGAA
G
Found at i:2152661 original size:131 final size:131
Alignment explanation
Indices: 2152505--2152789 Score: 367
Period size: 131 Copynumber: 2.2 Consensus size: 131
2152495 TCGGTTGGAG
*
2152505 TAATAAATGATTGCTTTAAGGCATGAGAGATCATTTATTCTCGATTGGAAATAATTAGATATTAT
1 TAATAAATGATTGCTTTAAGGCATGAGAGATCATTTATTCTCGATTGGAAATAATTAAATATTAT
* * * * * * *
2152570 TGTTTTCTCTCGAATC-ATTATTGATTTTTAAGACGTAATAGTGATATATATTCATTTCGATTAC
66 CGTTTGCACTCAAATCAATT-TTGAATTTTAAGACGAAAGAGTGATATATATTCATTTCGATTAC
2152634 AA
130 AA
* * * *
2152636 TAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTTGATTGGAAATCATTAAATATTAT
1 TAATAAATGATTGCTTTAAGGCATGAGAGATCATTTATTCTCGATTGGAAATAATTAAATATTAT
* * * * * *
2152701 CGTTTGCACTCAAATCAATTTTGAATTTTAATATGAAAGAGTGATATCTTTTCATTTCGGTTAGA
66 CGTTTGCACTCAAATCAATTTTGAATTTTAAGACGAAAGAGTGATATATATTCATTTCGATTACA
*
2152766 G
131 A
*
2152767 TAATAAATTATTGC-TTAAGGCAT
1 TAATAAATGATTGCTTTAAGGCAT
2152790 TCTCGATTGG
Statistics
Matches: 132, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
130 9 0.07
131 120 0.91
132 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (131 bp):
TAATAAATGATTGCTTTAAGGCATGAGAGATCATTTATTCTCGATTGGAAATAATTAAATATTAT
CGTTTGCACTCAAATCAATTTTGAATTTTAAGACGAAAGAGTGATATATATTCATTTCGATTACA
A
Found at i:2154028 original size:185 final size:183
Alignment explanation
Indices: 2153716--2154103 Score: 586
Period size: 185 Copynumber: 2.1 Consensus size: 183
2153706 TTTTCTAATT
* *
2153716 TATATAAA-AATTAA-ATGTTTTTAATTCAAAAAAAAAAGTTTATAATTAATTTAAATAATATAT
1 TATATAAATATTTAATAT-TTTTTAATT-AAAAAAAAAAGTTTACAATTAATTTAAATAATATAT
*
2153779 AATTATAAAATAAAAATTTCAGATAAAATTTTTAATTAATTAATATTGATTTATGTTTAAAAGTT
64 AATTATAAAATAAAAATTTCAGATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
* * * *
2153844 TTTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTGAACCCATATGTTA
129 ATTGGATCTTAAATTATTAATTGAGTTTTAAATGGGTTGGGCTGAACCCACATG--A
*
2153901 TATATAATATATTTAATATTTTTTAATT-AAAAAAATAGTTTACAATTAATTTAAATAATATATA
1 TATATAA-ATATTTAATATTTTTTAATTAAAAAAAAAAGTTTACAATTAATTTAAATAATATATA
* *
2153965 ATTATAAAATAAAAAATTT-ATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
65 ATTATAAAAT-AAAAATTTCAGATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
* *
2154029 ATTGGATCTTAAATTATTAATTGAGTTTTAAATGGGTTGGGCTGAGCCCACATGC
129 ATTGGATCTTAAATTATTAATTGAGTTTTAAATGGGTTGGGCTGAACCCACATGA
2154084 TATATAAATATTTAATATTT
1 TATATAAATATTTAATATTT
2154104 AAAATTTAAT
Statistics
Matches: 187, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
182 13 0.07
183 7 0.04
185 142 0.76
186 9 0.05
187 14 0.07
188 2 0.01
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (183 bp):
TATATAAATATTTAATATTTTTTAATTAAAAAAAAAAGTTTACAATTAATTTAAATAATATATAA
TTATAAAATAAAAATTTCAGATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTAT
TGGATCTTAAATTATTAATTGAGTTTTAAATGGGTTGGGCTGAACCCACATGA
Found at i:2156340 original size:2 final size:2
Alignment explanation
Indices: 2156333--2156371 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
2156323 TGAGAATTCA
2156333 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2156372 ATTGTTAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2157170 original size:93 final size:93
Alignment explanation
Indices: 2156972--2157363 Score: 506
Period size: 93 Copynumber: 4.2 Consensus size: 93
2156962 GCCGGAGGAC
* * * * * *
2156972 TAGGAACATACTTCAACAAATTACTTGTAAGCGACGAAGATTTAACAGCCGTCGGGGGTGAA-CG
1 TAGGAGCATACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAGCCGTGGGGGGTGAACCA
*
2157036 ATATGATATCGGGTTGCCGGTGGAGGGT
66 ATATGATAGCGGGTTGCCGGTGGAGGGT
* *
2157064 TAGGAGCATACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAACTGTGGGGGGTGAACCA
1 TAGGAGCATACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAGCCGTGGGGGGTGAACCA
*
2157129 ATATGATAGCGGGTTGCAGGTGGAGGGT
66 ATATGATAGCGGGTTGCCGGTGGAGGGT
* *
2157157 TAGGAGCATACTTCGACAAA--AC-TGTAAGCGACGAAGATGTAACAGCTGTGGGAGGTGAACCA
1 TAGGAGCATACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAGCCGTGGGGGGTGAACCA
*
2157219 ATATGATAGCGGGTTTCCGGTGGAGGGT
66 ATATGATAGCGGGTTGCCGGTGGAGGGT
* * * * * * *
2157247 TAGGAACATAAC-CCGACGAATCTCTTGTAAGTGACGAAGATGCAACAGCCGTGGGTGGTGAACC
1 TAGGAGCAT-ACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAGCCGTGGGGGGTGAACC
* * *
2157311 GATATGATATCGGGTTGCCGGTGGAGGAT
65 AATATGATAGCGGGTTGCCGGTGGAGGGT
* *
2157340 TAGGAGCATATTTCGCCAACATCA
1 TAGGAGCATACTTCGACAA-ATCA
2157364 TGACCCTGAG
Statistics
Matches: 261, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
90 78 0.30
91 4 0.02
92 57 0.22
93 119 0.46
94 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (93 bp):
TAGGAGCATACTTCGACAAATCACTTGTAAGCGACGAAGATGTAACAGCCGTGGGGGGTGAACCA
ATATGATAGCGGGTTGCCGGTGGAGGGT
Found at i:2157309 original size:183 final size:184
Alignment explanation
Indices: 2156965--2157354 Score: 518
Period size: 183 Copynumber: 2.1 Consensus size: 184
2156955 ACGAGGTGCC
* * * *
2156965 GGAGGACTAGGAACATACTTCAACAAATTACTTGTAAGCGACGAAGATTTAACAGCCGTCGGGGG
1 GGAGGATTAGGAGCATACTTCGACAAA-TACTTGTAAGCGACGAAGATGTAACAGCCGTCGGGGG
* * * *
2157030 TGAACGATATGATATCGGGTTGCCGGTGGAGGGTTAGGAGCATACTTCGACAAATCACTTGTAAG
65 TGAACAATATGATAGCGGGTTGCCGGTGGAGGGTTAGGAACATACTCCGACAAATCACTTGTAAG
* *
2157095 CGACGAAGATGTAACAACTGTGGGGGGTGAACCAATATGATAGCGGGTTGCAGGT
130 CGACGAAGATGCAACAACCGTGGGGGGTGAACCAATATGATAGCGGGTTGCAGGT
* *
2157150 GGAGGGTTAGGAGCATACTTCGACAAA-AC-TGTAAGCGACGAAGATGTAACAGCTGT-GGGAGG
1 GGAGGATTAGGAGCATACTTCGACAAATACTTGTAAGCGACGAAGATGTAACAGCCGTCGGG-GG
* * *
2157212 TGAACCAATATGATAGCGGGTTTCCGGTGGAGGGTTAGGAACATAAC-CCGACGAATCTCTTGTA
65 TGAA-CAATATGATAGCGGGTTGCCGGTGGAGGGTTAGGAACAT-ACTCCGACAAATCACTTGTA
* * * * * *
2157276 AGTGACGAAGATGCAACAGCCGTGGGTGGTGAACCGATATGATATCGGGTTGCCGGT
128 AGCGACGAAGATGCAACAACCGTGGGGGGTGAACCAATATGATAGCGGGTTGCAGGT
*
2157333 GGAGGATTAGGAGCATATTTCG
1 GGAGGATTAGGAGCATACTTCG
2157355 CCAACATCAT
Statistics
Matches: 179, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
181 3 0.02
182 31 0.17
183 120 0.67
184 2 0.01
185 23 0.13
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (184 bp):
GGAGGATTAGGAGCATACTTCGACAAATACTTGTAAGCGACGAAGATGTAACAGCCGTCGGGGGT
GAACAATATGATAGCGGGTTGCCGGTGGAGGGTTAGGAACATACTCCGACAAATCACTTGTAAGC
GACGAAGATGCAACAACCGTGGGGGGTGAACCAATATGATAGCGGGTTGCAGGT
Found at i:2170135 original size:2 final size:2
Alignment explanation
Indices: 2170128--2170158 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2170118 GAACATCATA
2170128 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2170159 TAAGAGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2172502 original size:5 final size:5
Alignment explanation
Indices: 2172492--2172524 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
2172482 CTTTCAAAGC
2172492 CTTAG CTTAG CTTAG CTTAG CTTAG CTTAG CTT
1 CTTAG CTTAG CTTAG CTTAG CTTAG CTTAG CTT
2172525 TGTGTGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.42
Consensus pattern (5 bp):
CTTAG
Found at i:2172626 original size:16 final size:16
Alignment explanation
Indices: 2172605--2172639 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
2172595 ACTTTTATAA
2172605 AAAATATATAAAATTT
1 AAAATATATAAAATTT
*
2172621 AAAATATATATAATTT
1 AAAATATATAAAATTT
2172637 AAA
1 AAA
2172640 TTTTCAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATATATAAAATTT
Found at i:2183965 original size:2 final size:2
Alignment explanation
Indices: 2183958--2184012 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
2183948 CTGTTTTCTT
2183958 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2183999 TA TA TA -A TA TA TA T
1 TA TA TA TA TA TA TA T
2184013 TCTTTCGATG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 49 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Done.