Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 13 of 39
Found at i:2583832 original size:7 final size:7
Alignment explanation
Indices: 2583810--2583923 Score: 101
Period size: 7 Copynumber: 16.4 Consensus size: 7
2583800 ACACCCCGGG
2583810 TCTT-CT
1 TCTTCCT
2583816 TCTT-CT
1 TCTTCCT
2583822 TCTTCCT
1 TCTTCCT
*
2583829 TCTTTCTT
1 TC-TTCCT
*
2583837 TCTTTCT
1 TCTTCCT
2583844 T-TATCCT
1 TCT-TCCT
*
2583851 TCTCCCT
1 TCTTCCT
*
2583858 TCTCCCT
1 TCTTCCT
2583865 TC-TCCTT
1 TCTTCC-T
*
2583872 TCTTCTT
1 TCTTCCT
*
2583879 TCTTTCT
1 TCTTCCT
*
2583886 TCTTTCT
1 TCTTCCT
2583893 TCTTCCT
1 TCTTCCT
2583900 TCTTCCT
1 TCTTCCT
2583907 TCTTCCT
1 TCTTCCT
*
2583914 TCTTCTT
1 TCTTCCT
2583921 TCT
1 TCT
2583924 CTTTTCACTT
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
6 13 0.14
7 69 0.76
8 9 0.10
ACGTcount: A:0.01, C:0.37, G:0.00, T:0.62
Consensus pattern (7 bp):
TCTTCCT
Found at i:2583871 original size:42 final size:43
Alignment explanation
Indices: 2583820--2583923 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 43
2583810 TCTTCTTCTT
2583820 CTTCTTCCTTCTTTCTTTCTTTCTT-TATCCTTCTCCCTTCTCC
1 CTTCTTCCTTCTTTCTTTCTTTCTTCT-TCCTTCTCCCTTCTCC
* * *
2583863 CTTC-TCCTT-TCTTCTTTCTTTCTTCTTTCTTCTTCCTTCTTC
1 CTTCTTCCTTCT-TTCTTTCTTTCTTCTTCCTTCTCCCTTCTCC
2583905 CTTCTTCCTTC-TTCTTTCT
1 CTTCTTCCTTCTTTCTTTCT
2583924 CTTTTCACTT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
41 1 0.02
42 43 0.80
43 10 0.19
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.62
Consensus pattern (43 bp):
CTTCTTCCTTCTTTCTTTCTTTCTTCTTCCTTCTCCCTTCTCC
Found at i:2591613 original size:20 final size:20
Alignment explanation
Indices: 2591590--2591632 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2591580 AATCCACCAC
*
2591590 ATGCAACTAAATGCTTCTAA
1 ATGCAACTAAATGATTCTAA
* *
2591610 ATGCATCTATATGATTCTAA
1 ATGCAACTAAATGATTCTAA
2591630 ATG
1 ATG
2591633 GTCTTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (20 bp):
ATGCAACTAAATGATTCTAA
Found at i:2592799 original size:7 final size:7
Alignment explanation
Indices: 2592787--2592878 Score: 64
Period size: 7 Copynumber: 13.3 Consensus size: 7
2592777 GGAGGAGGAG
2592787 GAAAGAA
1 GAAAGAA
2592794 GAAAGAA
1 GAAAGAA
*
2592801 GAAGGAA
1 GAAAGAA
*
2592808 GAATGAA
1 GAAAGAA
2592815 G-AAGAAA
1 GAAAG-AA
*
2592822 GAAATAA
1 GAAAGAA
*
2592829 GAAATAA
1 GAAAGAA
* *
2592836 AAAATTAA
1 GAAA-GAA
*
2592844 -AAATAA
1 GAAAGAA
*
2592850 AAAAGAA
1 GAAAGAA
2592857 GAAAGAA
1 GAAAGAA
*
2592864 GGAAGAA
1 GAAAGAA
2592871 G-AAGAA
1 GAAAGAA
2592877 GA
1 GA
2592879 CGTGTGGGGG
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
6 11 0.15
7 56 0.78
8 5 0.07
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.07
Consensus pattern (7 bp):
GAAAGAA
Found at i:2595374 original size:65 final size:63
Alignment explanation
Indices: 2595255--2595464 Score: 221
Period size: 65 Copynumber: 3.3 Consensus size: 63
2595245 TTTTTTAGAG
* * *
2595255 TGATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGC
1 TGATGCATCGATGCA-CAA-CCATGCACCGATGCACTCAGGATATT---TTGAAACATCGAATGC
2595317 ATT
61 ATT
* *
2595320 TCATGCATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCAT
1 TGATGCATCGATGCACA-ACCATGCACCGATGCACTCAGGATATTT-TG-AAACATCGAATGCAT
2595384 T
63 T
* * * * *
2595385 TGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCA-CAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
2595449 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
2595465 TCTTAGTGCA
Statistics
Matches: 125, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 47 0.38
65 69 0.55
66 5 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (63 bp):
TGATGCATCGATGCACAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
Found at i:2595464 original size:17 final size:19
Alignment explanation
Indices: 2595436--2595484 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
2595426 TATTTTGAAA
2595436 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
2595454 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
2595473 CACCGATGCACT
1 CATCGATGCACT
2595485 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:2596510 original size:3 final size:3
Alignment explanation
Indices: 2596504--2596583 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
2596494 AGGAGGAGGA
2596504 AAG AAG AAGG AAG AAGG AAG AATG AAG AAG AAAG AAAG AAG AAAG AAG
1 AAG AAG AA-G AAG AA-G AAG AA-G AAG AAG -AAG -AAG AAG -AAG AAG
2596552 AAAG AAAG AAGG AAG AAG AAAG AAG AAG AAG A
1 -AAG -AAG AA-G AAG AAG -AAG AAG AAG AAG A
2596584 CCTGTGGGGG
Statistics
Matches: 69, Mismatches: 0, Indels: 16
0.81 0.00 0.19
Matches are distributed among these distances:
3 37 0.54
4 32 0.46
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (3 bp):
AAG
Found at i:2596518 original size:7 final size:7
Alignment explanation
Indices: 2596506--2596582 Score: 84
Period size: 7 Copynumber: 11.0 Consensus size: 7
2596496 GAGGAGGAAA
2596506 GAAGAAG
1 GAAGAAG
2596513 GAAGAAG
1 GAAGAAG
*
2596520 GAAGAAT
1 GAAGAAG
2596527 GAAGAAG
1 GAAGAAG
* *
2596534 AAAGAAA
1 GAAGAAG
*
2596541 GAAGAAA
1 GAAGAAG
2596548 GAAGAAAG
1 GAAG-AAG
*
2596556 AAAGAAG
1 GAAGAAG
2596563 GAAGAAG
1 GAAGAAG
*
2596570 AAAGAA-
1 GAAGAAG
2596576 GAAGAAG
1 GAAGAAG
2596583 ACCTGTGGGG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
6 5 0.09
7 48 0.83
8 5 0.09
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (7 bp):
GAAGAAG
Found at i:2596538 original size:4 final size:4
Alignment explanation
Indices: 2596531--2596575 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
2596521 AAGAATGAAG
*
2596531 AAGA AAGA AAG- AAGA AAG- AAGA AAGA AAG- AAGG AAG- AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
2596575 A
1 A
2596576 GAAGAAGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 12 0.32
4 25 0.68
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:2597187 original size:3 final size:3
Alignment explanation
Indices: 2597179--2597230 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
2597169 AAAAAGCTCA
*
2597179 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
2597227 ATT A
1 ATT A
2597231 AGGACGTTAG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:2600489 original size:2 final size:2
Alignment explanation
Indices: 2600482--2600510 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2600472 TAGTTCAAGG
2600482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2600511 ACAAATCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2607498 original size:233 final size:231
Alignment explanation
Indices: 2607091--2607554 Score: 910
Period size: 233 Copynumber: 2.0 Consensus size: 231
2607081 TGCAGATGAG
2607091 GATTTGAAGAACTGGCCTTGGCCTTTCCAAGTTTAAGAAAAGCAAAATTCTGGGTTTTATTTTTG
1 GATTTGAAGAACTGGCCTTGGCCTTTCCAAGTTTAAGAAAAGCAAAATTCTGGGTTTTATTTTTG
2607156 AGAAAAATTTGAAATTCTACCAAGTTACATTGTAAAATATTGGTGATTTTTACTGTTCTTGTACT
66 AGAAAAATTTGAAATTCTACCAAGTTACATTGTAAAATATTGGTGATTTTTACTGTTCTTGTACT
2607221 GTCTGTCCATCTGTTCTTGATCAGATCGGTTACTTTATAAATTTTGATTAAAGTTCAATAAATTG
131 GTCTGTCCATCTGTTCTTGATCAGATCGGTTACTTTATAAATTTTGATTAAAGTTCAATAAATTG
2607286 TTGATTTCTATATATATCTCGTTTCTGAACCATTATTA
196 TTGATTTC--TATATATCTCGTTTCTGAACCATTATTA
2607324 GATTTGAAGAACTGGCCTTGGCCTTTCCAAGTTTAAGAAAAGCAAAATTCTGGGTTTTATTTTTG
1 GATTTGAAGAACTGGCCTTGGCCTTTCCAAGTTTAAGAAAAGCAAAATTCTGGGTTTTATTTTTG
2607389 AGAAAAATTTGAAATTCTACCAAGTTACATTGTAAAATATTGGTGATTTTTACTGTTCTTGTACT
66 AGAAAAATTTGAAATTCTACCAAGTTACATTGTAAAATATTGGTGATTTTTACTGTTCTTGTACT
2607454 GTCTGTCCATCTGTTCTTGATCAGATCGGTTACTTTATAAATTTTGATTAAAGTTCAATAAATTG
131 GTCTGTCCATCTGTTCTTGATCAGATCGGTTACTTTATAAATTTTGATTAAAGTTCAATAAATTG
2607519 TTGATTTCTATATATCTCGTTTCTGAACCATTATTA
196 TTGATTTCTATATATCTCGTTTCTGAACCATTATTA
2607555 AAATATGTAT
Statistics
Matches: 231, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
231 28 0.12
233 203 0.88
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (231 bp):
GATTTGAAGAACTGGCCTTGGCCTTTCCAAGTTTAAGAAAAGCAAAATTCTGGGTTTTATTTTTG
AGAAAAATTTGAAATTCTACCAAGTTACATTGTAAAATATTGGTGATTTTTACTGTTCTTGTACT
GTCTGTCCATCTGTTCTTGATCAGATCGGTTACTTTATAAATTTTGATTAAAGTTCAATAAATTG
TTGATTTCTATATATCTCGTTTCTGAACCATTATTA
Found at i:2607974 original size:16 final size:17
Alignment explanation
Indices: 2607953--2607985 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
2607943 ATGATCTTTT
2607953 TGATAAAGTA-ATTAAA
1 TGATAAAGTACATTAAA
2607969 TGATAAAGTACATTAAA
1 TGATAAAGTACATTAAA
2607986 AATCACTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (17 bp):
TGATAAAGTACATTAAA
Found at i:2614880 original size:22 final size:22
Alignment explanation
Indices: 2614811--2614883 Score: 110
Period size: 22 Copynumber: 3.3 Consensus size: 22
2614801 CTGTTAGCGC
*
2614811 CCGGCGATGGAAGCTGTGACTG
1 CCGGCGATGGAGGCTGTGACTG
* * *
2614833 TCGACGATGGAGGCTATGACTG
1 CCGGCGATGGAGGCTGTGACTG
2614855 CCGGCGATGGAGGCTGTGACTG
1 CCGGCGATGGAGGCTGTGACTG
2614877 CCGGCGA
1 CCGGCGA
2614884 AAAAAGAAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.18, C:0.23, G:0.41, T:0.18
Consensus pattern (22 bp):
CCGGCGATGGAGGCTGTGACTG
Found at i:2630490 original size:2 final size:2
Alignment explanation
Indices: 2630479--2630582 Score: 125
Period size: 2 Copynumber: 56.0 Consensus size: 2
2630469 CCGACCCAAA
* * *
2630479 AT AT -T AT AT AT AT A- AT AT AT A- AA AA AT A- AA AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2630516 AT AT A- AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2630555 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2630583 CGGGGCGGGG
Statistics
Matches: 92, Mismatches: 2, Indels: 16
0.84 0.02 0.15
Matches are distributed among these distances:
1 8 0.09
2 84 0.91
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:2632269 original size:26 final size:24
Alignment explanation
Indices: 2632232--2632294 Score: 90
Period size: 26 Copynumber: 2.5 Consensus size: 24
2632222 AGTTTTTTAC
2632232 TATTAAATCATTTTTAGTAATAAT
1 TATTAAATCATTTTTAGTAATAAT
* *
2632256 TATTATAATTCATTATTAGTAATCAT
1 TATTA-AA-TCATTTTTAGTAATAAT
2632282 TATTAAATCATTT
1 TATTAAATCATTT
2632295 GTATCAAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.29
25 4 0.12
26 20 0.59
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (24 bp):
TATTAAATCATTTTTAGTAATAAT
Found at i:2632272 original size:13 final size:13
Alignment explanation
Indices: 2632237--2632286 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
2632227 TTTACTATTA
*
2632237 AATCATTTTTAGT
1 AATCATTATTAGT
*
2632250 AATAATTATTA-T
1 AATCATTATTAGT
2632262 AATTCATTATTAGT
1 AA-TCATTATTAGT
2632276 AATCATTATTA
1 AATCATTATTA
2632287 AATCATTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 3 0.09
13 26 0.81
14 3 0.09
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (13 bp):
AATCATTATTAGT
Found at i:2632355 original size:16 final size:16
Alignment explanation
Indices: 2632336--2632367 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2632326 ATTATTACTA
*
2632336 ATCATTATTAAATCAT
1 ATCATTACTAAATCAT
2632352 ATCATTACTAAATCAT
1 ATCATTACTAAATCAT
2632368 TAAATATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (16 bp):
ATCATTACTAAATCAT
Found at i:2632376 original size:26 final size:25
Alignment explanation
Indices: 2632324--2632384 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
2632314 TAATAATAAA
*
2632324 ATATTATTACTAATCATTATTAAATC
1 ATATCATTACTAATCATTA-TAAATC
2632350 ATATCATTACTAAATCATTA-AATATC
1 ATATCATTACT-AATCATTATAA-ATC
*
2632376 AAATCATTA
1 ATATCATTA
2632385 AATTAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (25 bp):
ATATCATTACTAATCATTATAAATC
Found at i:2632418 original size:24 final size:25
Alignment explanation
Indices: 2632376--2632425 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
2632366 ATTAAATATC
2632376 AAATCATTAAATTAATAATAATTAGT
1 AAATCATT-AATTAATAATAATTAGT
* *
2632402 AAATCATT-ATTAGTAATTATTAGT
1 AAATCATTAATTAATAATAATTAGT
2632426 GCTAATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
26 8 0.36
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (25 bp):
AAATCATTAATTAATAATAATTAGT
Found at i:2633371 original size:65 final size:64
Alignment explanation
Indices: 2633180--2633382 Score: 193
Period size: 65 Copynumber: 3.1 Consensus size: 64
2633170 AGAGTGCAAT
* * * *
2633180 GATGCATAAAATGCATTCGATGTTTCA-AAATAGCT-TGATTGCATCAATGCATGGCTGGTGCAT
1 GATGCATCAAATGCATTCGATGTTTCATAAA-A-CTCTGAGTGCATCGATGCATGGTTGGTGCAT
2633243 C
64 C
* *
2633244 GATGCATCAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCGATGCTTAGTAT-GTGCAT
1 GATGCATCAAATGCATTCGATG-TTTCATAAAACTCTGAGTGCATCGATGCATGGT-TGGTGCAT
2633308 C
64 C
* ** *
2633309 GATGCATGAAATGCATTCGATG-TTCA-ATTTATTCCATG-GTGCATCGATGCATGGATTGGTGC
1 GATGCATCAAATGCATTCGATGTTTCATA-AAACT-C-TGAGTGCATCGATGCATGG-TTGGTGC
2633371 ATC
62 ATC
*
2633374 GGTGCATCA
1 GATGCATCA
2633383 CTTTGAAAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 17
0.79 0.10 0.12
Matches are distributed among these distances:
62 1 0.01
63 6 0.05
64 39 0.34
65 66 0.57
66 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (64 bp):
GATGCATCAAATGCATTCGATGTTTCATAAAACTCTGAGTGCATCGATGCATGGTTGGTGCATC
Found at i:2635699 original size:64 final size:63
Alignment explanation
Indices: 2635609--2635769 Score: 171
Period size: 64 Copynumber: 2.5 Consensus size: 63
2635599 TTGTTTAAGG
* * * *
2635609 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAAGATTTA
* * * * *
2635673 TGCATCGATGCATAAGGAGTGTATCGATGCATCCCCATTAAATACAAACATCGAATAAGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAAGATTTA
** *
2635737 TGCATCGATGCATGGTGTAGTGCATCGATGCAT
1 TGCATCGATGCAT-AAGCAGTGCATCGATGCAT
2635770 ACCTCCATTA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 59 0.73
65 21 0.26
66 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGCAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAAGATTTA
Found at i:2636406 original size:103 final size:103
Alignment explanation
Indices: 2636227--2636416 Score: 371
Period size: 103 Copynumber: 1.8 Consensus size: 103
2636217 GTAGAGGGTC
*
2636227 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
2636292 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
2636330 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
2636395 TTGATCCTTGGCATATGTATAT
66 TTGATCCTTGGCATATGTATAT
2636417 TGTCGAAACG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 86 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:2639467 original size:53 final size:53
Alignment explanation
Indices: 2639426--2640091 Score: 1002
Period size: 53 Copynumber: 12.5 Consensus size: 53
2639416 TCACTTCCTC
* ** *
2639426 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTACGGG-CTCGCTCTCTCT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-A
* * *
2639480 TTTCTTCAGGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCTGCTCTCTC
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
2639533 TTCCTTCAGGGAGTAGAACTCGAATAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
2639586 TTTATTCAAGGAGTAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
2639639 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTATGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
2639693 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
2639746 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
2639800 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTCCGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
2639853 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTTTT
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
2639907 TTTCTTCAGGAAGTAGAACTCGAACAATAATCTTCCTATGGG-CTCGCTCTCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCTA
* * *
2639960 TTTCTTCAGGGAGTAAGAACTTGAACAATAATCTTCCTACGGGT-C-CACACTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
2640012 TTTCTTCAGGGAGTAAAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
2640063 TTTTCTTCAGGGAGTAGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAGAACTCGAACAAT
2640092 CTTCTATTGC
Statistics
Matches: 563, Mismatches: 39, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
51 30 0.05
52 49 0.09
53 259 0.46
54 224 0.40
55 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (53 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:2639540 original size:107 final size:107
Alignment explanation
Indices: 2639426--2640091 Score: 1017
Period size: 107 Copynumber: 6.3 Consensus size: 107
2639416 TCACTTCCTC
* ** *
2639426 TTTCTTCAGGGAGT-AGAACTCGAACATTCTTCTTCCTACGGG-CTCGCTCTCTCTTTTCTTCAG
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-ATTTCTTCAG
* * *
2639489 GGAGTAGAACTCGAACAATCATCTTCCTACGGGTCTGCTCTCTC
64 GGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
2639533 TTCCTTCAGGGAGT-AGAACTCGAATAATAATCTTCCTACGGGTCCGCTCTCTATTTATTCAAGG
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
* *
2639597 AGTAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTT
66 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
2639639 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTATGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
*
2639704 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
66 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
2639746 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
*
2639811 AGTAGAACTCGAACAATAATCTTCCTCCGGGTCCGCTCTCTA
66 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
2639853 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTTTTTTTCTTCAGGA
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
*
2639918 AGTAGAACTCGAACAATAATCTTCCTATGGG-CTCGCTCTCTA
66 AGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCTA
* * *
2639960 TTTCTTCAGGGAGTAAGAACTTGAACAATAATCTTCCTACGGGT-C-CACACTATTTCTTCAGGG
1 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
*
2640023 AGTAAAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
66 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
2640063 TTTTCTTCAGGGAGT-AGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAAGAACTCGAACAAT
2640092 CTTCTATTGC
Statistics
Matches: 519, Mismatches: 35, Indels: 14
0.91 0.06 0.02
Matches are distributed among these distances:
103 16 0.03
104 15 0.03
105 45 0.09
106 63 0.12
107 379 0.73
108 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (107 bp):
TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:2640172 original size:37 final size:37
Alignment explanation
Indices: 2640101--2640178 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
2640091 TCTTCTATTG
* *
2640101 CTTCACTACCTCCTTGTGAAGGCTTATAGATGATTTA
1 CTTCACTACCTCCTTGTGAAGGCTTAGAGATGATTCA
* *
2640138 CTTCACTA-CTCTTTCGTGAAGGCTT-GAGTTTGATTCA
1 CTTCACTACCTCCTT-GTGAAGGCTTAGAG-ATGATTCA
2640175 CTTC
1 CTTC
2640179 GAAGGTTGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 7 0.20
37 28 0.80
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.40
Consensus pattern (37 bp):
CTTCACTACCTCCTTGTGAAGGCTTAGAGATGATTCA
Found at i:2641453 original size:7 final size:8
Alignment explanation
Indices: 2641442--2641507 Score: 73
Period size: 9 Copynumber: 8.1 Consensus size: 8
2641432 GTTTTGTTTT
2641442 TTTTTTCA
1 TTTTTTCA
2641450 TTTTTATCA
1 TTTTT-TCA
2641459 TTTTTATCA
1 TTTTT-TCA
*
2641468 TTTTTTTA
1 TTTTTTCA
2641476 -TTTTTCA
1 TTTTTTCA
2641483 -TTTTTCA
1 TTTTTTCA
*
2641490 TTTTTTTCC
1 -TTTTTTCA
2641499 TTTTTTCA
1 TTTTTTCA
2641507 T
1 T
2641508 CTTCAAGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
7 13 0.25
8 15 0.29
9 23 0.45
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:2641486 original size:6 final size:7
Alignment explanation
Indices: 2641443--2641494 Score: 50
Period size: 7 Copynumber: 6.7 Consensus size: 7
2641433 TTTTGTTTTT
2641443 TTTTTCA
1 TTTTTCA
2641450 TTTTTATCA
1 -TTTT-TCA
2641459 TTTTTATCA
1 -TTTT-TCA
*
2641468 TTTTTTTA
1 -TTTTTCA
2641476 TTTTTCA
1 TTTTTCA
2641483 TTTTTCA
1 TTTTTCA
2641490 TTTTT
1 TTTTT
2641495 TTCCTTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
7 18 0.44
8 6 0.15
9 17 0.41
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTTCA
Found at i:2641491 original size:31 final size:32
Alignment explanation
Indices: 2641438--2641504 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 32
2641428 TTTTGTTTTG
2641438 TTTTTTTTTTCATTTTTATCATTTTTATCATT
1 TTTTTTTTTTCATTTTTATCATTTTTATCATT
* *
2641470 TTTTTATTTTTCA-TTTT-TCATTTTTTTCCTT
1 TTTTT-TTTTTCATTTTTATCATTTTTATCATT
2641501 TTTT
1 TTTT
2641505 CATCTTCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 16 0.50
32 9 0.28
33 7 0.22
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (32 bp):
TTTTTTTTTTCATTTTTATCATTTTTATCATT
Found at i:2641502 original size:22 final size:23
Alignment explanation
Indices: 2641460--2641502 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
2641450 TTTTTATCAT
*
2641460 TTTTATCATTTTTTTATTTTTCA
1 TTTTATCATTTTTTTACTTTTCA
*
2641483 TTTT-TCATTTTTTTCCTTTT
1 TTTTATCATTTTTTTACTTTT
2641503 TTCATCTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATCATTTTTTTACTTTTCA
Found at i:2651910 original size:23 final size:23
Alignment explanation
Indices: 2651878--2651937 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
2651868 TATGGTACTA
*
2651878 CGGTGTAATTCTACGCAGCACTC
1 CGGTGCAATTCTACGCAGCACTC
** *
2651901 CGGTGCAATTCTACGTGGCACTT
1 CGGTGCAATTCTACGCAGCACTC
*
2651924 AGG-GCAATTCTACG
1 CGGTGCAATTCTACG
2651938 TGGCACTTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 11 0.34
23 21 0.66
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (23 bp):
CGGTGCAATTCTACGCAGCACTC
Found at i:2651933 original size:22 final size:22
Alignment explanation
Indices: 2651905--2651948 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2651895 GCACTCCGGT
2651905 GCAATTCTACGTGGCACTTAGG
1 GCAATTCTACGTGGCACTTAGG
2651927 GCAATTCTACGTGGCACTTAGG
1 GCAATTCTACGTGGCACTTAGG
2651949 TGTAATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (22 bp):
GCAATTCTACGTGGCACTTAGG
Found at i:2657708 original size:64 final size:63
Alignment explanation
Indices: 2657622--2657763 Score: 187
Period size: 64 Copynumber: 2.2 Consensus size: 63
2657612 ATTGTTTAAA
* * *
2657622 ATGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTT
1 ATGCATCGATGCATAAGCAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAGGATTT
* * * *
2657686 ATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTT
1 ATGCATCGATGCATAAGCAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAGGATTT
2657750 ATGCATCGATGCAT
1 ATGCATCGATGCAT
2657764 GGTGTAGTGC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
64 62 0.90
65 6 0.09
66 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (63 bp):
ATGCATCGATGCATAAGCAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAGGATTT
Found at i:2658469 original size:103 final size:103
Alignment explanation
Indices: 2658244--2658461 Score: 391
Period size: 103 Copynumber: 2.1 Consensus size: 103
2658234 GTAGAGGGTC
* *
2658244 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACATATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
* * *
2658309 TTGATCCTTGGCATATGTATATTATTCTTAAGGAATGA
66 TTGATCATTAGCATATGTATATGATTCTTAAGGAATGA
2658347 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
2658412 TTGATCATTAGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCATTAGCATATGTATATGATTCTTAAGGAATGA
2658450 TATGTGGTCCTT
1 TATGTGGTCCTT
2658462 ATGGACATTA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 110 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATAC
TTGATCATTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:2658511 original size:23 final size:23
Alignment explanation
Indices: 2658478--2658540 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
2658468 ATTATTATAT
2658478 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
2658501 GGCACTCCGGTGTAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
2658524 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
2658541 ATATGAGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 33 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:2660374 original size:21 final size:22
Alignment explanation
Indices: 2660321--2660399 Score: 70
Period size: 23 Copynumber: 3.5 Consensus size: 22
2660311 TGGCAGTGTT
2660321 CATCGATGCACATTCAAGGCATG
1 CATCGATGCACATTCAAGG-ATG
* * *
2660344 CATCGGTGCACCTTCATGG-TG
1 CATCGATGCACATTCAAGGATG
* **
2660365 TATCGATGCACATTCAATGGGACA
1 CATCGATGCACATTCAA--GGATG
2660389 CATCGATGCAC
1 CATCGATGCAC
2660400 TGTTAAGTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
21 15 0.35
23 18 0.42
24 10 0.23
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (22 bp):
CATCGATGCACATTCAAGGATG
Found at i:2666995 original size:21 final size:21
Alignment explanation
Indices: 2666971--2667036 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
2666961 TTTTATTCAT
2666971 ATATTATTCTTGTTTAAATTA
1 ATATTATTCTTGTTTAAATTA
*
2666992 ATA-TATTAATTG-TT-AATTA
1 ATATTATT-CTTGTTTAAATTA
2667011 ATATAGTATTCTTGTTTAAATTA
1 ATAT--TATTCTTGTTTAAATTA
2667034 ATA
1 ATA
2667037 AATTAATAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 8 0.22
20 6 0.16
21 9 0.24
22 6 0.16
23 8 0.22
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (21 bp):
ATATTATTCTTGTTTAAATTA
Found at i:2666999 original size:23 final size:23
Alignment explanation
Indices: 2666969--2667041 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
2666959 TATTTTATTC
2666969 ATATATTATTCTTGTTTAAATTA
1 ATATATTATTCTTGTTTAAATTA
*
2666992 ATATATTA--ATTG-TT-AATTA
1 ATATATTATTCTTGTTTAAATTA
*
2667011 ATATAGTATTCTTGTTTAAATTA
1 ATATATTATTCTTGTTTAAATTA
*
2667034 ATAAATTA
1 ATATATTA
2667042 ATAGATTAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
19 12 0.29
20 2 0.05
21 6 0.15
22 2 0.05
23 19 0.46
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (23 bp):
ATATATTATTCTTGTTTAAATTA
Found at i:2667001 original size:42 final size:43
Alignment explanation
Indices: 2666955--2667052 Score: 130
Period size: 42 Copynumber: 2.3 Consensus size: 43
2666945 TTATTGGTTT
* * * *
2666955 TTAATAT-TTTATTCATATATTATTCTTGTTTAAATTAATATA
1 TTAATATGTTAATTAATATAGTATTCTTGTTTAAATTAATAAA
2666997 TTAAT-TGTTAATTAATATAGTATTCTTGTTTAAATTAATAAA
1 TTAATATGTTAATTAATATAGTATTCTTGTTTAAATTAATAAA
2667039 TTAATA-GATTAATT
1 TTAATATG-TTAATT
2667053 GTTTAAACGA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 1 0.02
42 42 0.86
43 6 0.12
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (43 bp):
TTAATATGTTAATTAATATAGTATTCTTGTTTAAATTAATAAA
Found at i:2667177 original size:25 final size:25
Alignment explanation
Indices: 2667149--2667255 Score: 98
Period size: 25 Copynumber: 4.4 Consensus size: 25
2667139 AATTAGTAGT
* *
2667149 AATCATTAGTAAATCATTATTATTC
1 AATCATTAGTAAATTATTATTATTA
* * * *
2667174 AATCATCATTAAA-AAGTTATTATCA
1 AATCATTAGTAAATTA-TTATTATTA
* *
2667199 AATCATTATTAAATTATTAGTATTA
1 AATCATTAGTAAATTATTATTATTA
2667224 AATCA-T--TAAATTATTA-TATTA
1 AATCATTAGTAAATTATTATTATTA
2667245 AATCATTAGTA
1 AATCATTAGTA
2667256 CTAAATCATT
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
21 10 0.15
22 11 0.16
24 4 0.06
25 42 0.62
26 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (25 bp):
AATCATTAGTAAATTATTATTATTA
Found at i:2667222 original size:14 final size:14
Alignment explanation
Indices: 2667205--2667336 Score: 54
Period size: 14 Copynumber: 10.9 Consensus size: 14
2667195 ATCAAATCAT
*
2667205 TATTAAATTATTAG
1 TATTAAATCATTAG
2667219 TATTAAATC---A-
1 TATTAAATCATTAG
*
2667229 T-T-AAATTATTA-
1 TATTAAATCATTAG
2667240 TATTAAATCATTAG
1 TATTAAATCATTAG
*
2667254 TACTAAATC---A-
1 TATTAAATCATTAG
*
2667264 T--TAAATTATTA-
1 TATTAAATCATTAG
2667275 TATTAAATCATTAG
1 TATTAAATCATTAG
*
2667289 TACTAAATC-----
1 TATTAAATCATTAG
*
2667298 -ATTAAATTATTA-
1 TATTAAATCATTAG
2667310 TATTAAATCATTAG
1 TATTAAATCATTAG
*
2667324 TACTAAATCATTA
1 TATTAAATCATTA
2667337 AATCATTATT
Statistics
Matches: 89, Mismatches: 11, Indels: 36
0.65 0.08 0.26
Matches are distributed among these distances:
8 15 0.17
9 1 0.01
10 2 0.02
11 6 0.07
12 1 0.01
13 28 0.31
14 36 0.40
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (14 bp):
TATTAAATCATTAG
Found at i:2667252 original size:8 final size:8
Alignment explanation
Indices: 2667220--2667344 Score: 64
Period size: 8 Copynumber: 17.5 Consensus size: 8
2667210 AATTATTAGT
2667220 ATTAAATC
1 ATTAAATC
*
2667228 ATTAAATT
1 ATTAAATC
2667236 ATT--AT-
1 ATTAAATC
2667241 ATTAAATC
1 ATTAAATC
*
2667249 ATT-AGT-
1 ATTAAATC
*
2667255 ACTAAATC
1 ATTAAATC
*
2667263 ATTAAATT
1 ATTAAATC
2667271 ATT--AT-
1 ATTAAATC
2667276 ATTAAATC
1 ATTAAATC
*
2667284 ATT-AGT-
1 ATTAAATC
*
2667290 ACTAAATC
1 ATTAAATC
*
2667298 ATTAAATT
1 ATTAAATC
2667306 ATT--AT-
1 ATTAAATC
2667311 ATTAAATC
1 ATTAAATC
*
2667319 ATT-AGT-
1 ATTAAATC
*
2667325 ACTAAATC
1 ATTAAATC
2667333 ATTAAATC
1 ATTAAATC
2667341 ATTA
1 ATTA
2667345 TTAGTAAATC
Statistics
Matches: 87, Mismatches: 15, Indels: 30
0.66 0.11 0.23
Matches are distributed among these distances:
5 9 0.10
6 12 0.14
7 18 0.21
8 48 0.55
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.42
Consensus pattern (8 bp):
ATTAAATC
Found at i:2667253 original size:35 final size:35
Alignment explanation
Indices: 2667205--2667552 Score: 286
Period size: 35 Copynumber: 9.3 Consensus size: 35
2667195 ATCAAATCAT
* *
2667205 TATTAAATTATTAGTATTAAATCATTAAATTATTA
1 TATTAAATCATTAGTACTAAATCATTAAATTATTA
2667240 TATTAAATCATTAGTACTAAATCATTAAATTATTA
1 TATTAAATCATTAGTACTAAATCATTAAATTATTA
2667275 TATTAAATCATTAGTACTAAATCATTAAATTATTA
1 TATTAAATCATTAGTACTAAATCATTAAATTATTA
*
2667310 TATTAAATCATTAGTACTAAATCATTAAATCATTA
1 TATTAAATCATTAGTACTAAATCATTAAATTATTA
* * * *
2667345 TTAGTAAATCATATCATTACACTTAAATCATT-ATTTATAA
1 -TATTAAATCAT-T-AGT--AC-TAAATCATTAAATTATTA
* *
2667385 AATTAATAATCATTAGTAATCAAATCATTAAATCATTATTAA
1 TATT-A-AATCATTAGTACT-AAATCATT-AA--ATTATT-A
* * * * *
2667427 TAAATCATATCATTAAGGTTCAAATATTATTAGTAATTATTA
1 T--ATTAAATCATT-A-GTACTAA-ATCATTA--AATTATTA
* *
2667469 TTATCAAATCATTAGTA-TCAAATCATTAAATCATTA
1 -TATTAAATCATTAGTACT-AAATCATTAAATTATTA
** *
2667505 TTATTAAATCATTAGTAGGAAATCATTAAATCATTA
1 -TATTAAATCATTAGTACTAAATCATTAAATTATTA
*
2667541 TTAATAAATCAT
1 -TATTAAATCAT
2667553 ATCATTACAC
Statistics
Matches: 260, Mismatches: 29, Indels: 47
0.77 0.09 0.14
Matches are distributed among these distances:
35 102 0.39
36 62 0.24
37 10 0.04
38 8 0.03
39 9 0.03
40 10 0.04
41 29 0.11
42 8 0.03
43 12 0.05
44 9 0.03
45 1 0.00
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (35 bp):
TATTAAATCATTAGTACTAAATCATTAAATTATTA
Found at i:2667339 original size:22 final size:21
Alignment explanation
Indices: 2667241--2667434 Score: 86
Period size: 22 Copynumber: 9.1 Consensus size: 21
2667231 AAATTATTAT
2667241 ATTAAATCATTAGTACTAAATC
1 ATTAAATCATTA-TACTAAATC
* *
2667263 ATTAAATTATTATATTAAATC
1 ATTAAATCATTATACTAAATC
* * *
2667284 ATTAGTACTAAATCATTAAATTATTAT-
1 ---A-T--TAAATCATTATACTA-AATC
2667311 ATTAAATCATTAGTACTAAATC
1 ATTAAATCATTA-TACTAAATC
*
2667333 ATTAAATCATTATTAGTAAATC
1 ATTAAATCATTA-TACTAAATC
*
2667355 A-T--ATCATTACACTTAAATC
1 ATTAAATCATTATAC-TAAATC
*
2667374 ATT--AT--TTATA--AAATT
1 ATTAAATCATTATACTAAATC
* *
2667389 AAT-AATCATTAGTAATCAAATC
1 ATTAAATCATTA-TACT-AAATC
*
2667411 ATTAAATCATTATTAATAAATC
1 ATTAAATCATTA-TACTAAATC
2667433 AT
1 AT
2667435 ATCATTAAGG
Statistics
Matches: 135, Mismatches: 18, Indels: 38
0.71 0.09 0.20
Matches are distributed among these distances:
15 6 0.04
16 2 0.01
18 8 0.06
19 16 0.12
20 3 0.02
21 21 0.16
22 48 0.36
23 13 0.10
24 2 0.01
25 1 0.01
27 13 0.10
28 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (21 bp):
ATTAAATCATTATACTAAATC
Found at i:2667440 original size:19 final size:19
Alignment explanation
Indices: 2667338--2667441 Score: 56
Period size: 19 Copynumber: 5.4 Consensus size: 19
2667328 AAATCATTAA
*
2667338 ATCATTATTAGTAAATCAT
1 ATCATTATTAATAAATCAT
* *
2667357 ATCATTA-CACTTAAATCAT
1 ATCATTATTA-ATAAATCAT
* *
2667376 -T-ATT-TATAA-AATTAAT
1 ATCATTAT-TAATAAATCAT
*
2667392 AATCATTAGTAATCAAATCATT
1 -ATCATTATTAAT-AAATCA-T
2667414 AAATCATTATTAATAAATCAT
1 --ATCATTATTAATAAATCAT
2667435 ATCATTA
1 ATCATTA
2667442 AGGTTCAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 22
0.67 0.10 0.23
Matches are distributed among these distances:
16 5 0.08
17 3 0.05
18 4 0.06
19 28 0.44
21 5 0.08
22 7 0.11
23 12 0.19
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (19 bp):
ATCATTATTAATAAATCAT
Found at i:2667502 original size:22 final size:22
Alignment explanation
Indices: 2667474--2667518 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2667464 TATTATTATC
2667474 AAATCATTAGTATCAAATCATT
1 AAATCATTAGTATCAAATCATT
* *
2667496 AAATCATTATTATTAAATCATT
1 AAATCATTAGTATCAAATCATT
2667518 A
1 A
2667519 GTAGGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATCATTAGTATCAAATCATT
Found at i:2667510 original size:14 final size:14
Alignment explanation
Indices: 2667333--2667532 Score: 58
Period size: 14 Copynumber: 13.9 Consensus size: 14
2667323 GTACTAAATC
2667333 ATTAAATCATTATT
1 ATTAAATCATTATT
*
2667347 AGTAAATCATATCATT
1 ATTAAATCAT-T-ATT
2667363 ACACTTAAATCATTATTT
1 --A-TTAAATCATTA-TT
* * * *
2667381 ATAAAATTAATAATC
1 ATTAAA-TCATTATT
* *
2667396 ATTAGTAATCA-AATC
1 ATTA--AATCATTATT
2667411 ATTAAATCATTATT
1 ATTAAATCATTATT
*
2667425 AATAAATCATATCATT
1 ATTAAATCAT-T-ATT
2667441 AAGGTTCAAAT-ATTATT
1 -A--TT-AAATCATTATT
* *
2667458 AGT-AATTATTATT
1 ATTAAATCATTATT
* *
2667471 ATCAAATCATTAGT
1 ATTAAATCATTATT
*
2667485 ATCAAATC------
1 ATTAAATCATTATT
2667493 ATTAAATCATTATT
1 ATTAAATCATTATT
*
2667507 ATTAAATCATTAGT
1 ATTAAATCATTATT
**
2667521 AGGAAATCATTA
1 ATTAAATCATTA
2667533 AATCATTATT
Statistics
Matches: 141, Mismatches: 21, Indels: 48
0.67 0.10 0.23
Matches are distributed among these distances:
8 7 0.05
12 3 0.02
13 12 0.09
14 60 0.43
15 18 0.13
16 14 0.10
17 7 0.05
18 5 0.04
19 11 0.08
20 4 0.03
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (14 bp):
ATTAAATCATTATT
Found at i:2667515 original size:27 final size:27
Alignment explanation
Indices: 2667402--2667515 Score: 65
Period size: 27 Copynumber: 4.2 Consensus size: 27
2667392 AATCATTAGT
*
2667402 AATCAAATCATTAAATCATTATTAATA
1 AATCAAATCATTAAATCATTATTATTA
* * *
2667429 AATCATATCATTAAGGTTCAAATATTATT-
1 AATCAAATCATTAA--ATC-ATTATTATTA
* * * * *
2667458 AGT--AATTATTATTATCA-AATCATTA
1 AATCAAATCATTA-AATCATTATTATTA
*
2667483 GTATCAAATCATTAAATCATTATTATTA
1 -AATCAAATCATTAAATCATTATTATTA
2667511 AATCA
1 AATCA
2667516 TTAGTAGGAA
Statistics
Matches: 60, Mismatches: 18, Indels: 18
0.62 0.19 0.19
Matches are distributed among these distances:
24 5 0.08
25 1 0.02
26 3 0.05
27 27 0.45
28 13 0.22
29 4 0.07
30 7 0.12
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.40
Consensus pattern (27 bp):
AATCAAATCATTAAATCATTATTATTA
Found at i:2667549 original size:22 final size:22
Alignment explanation
Indices: 2667507--2667552 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
2667497 AATCATTATT
*
2667507 ATTAAATCATTAGTAGGAAATC
1 ATTAAATCATTAGTAAGAAATC
* *
2667529 ATTAAATCATTATTAATAAATC
1 ATTAAATCATTAGTAAGAAATC
2667551 AT
1 AT
2667553 ATCATTACAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.37
Consensus pattern (22 bp):
ATTAAATCATTAGTAAGAAATC
Found at i:2676688 original size:12 final size:12
Alignment explanation
Indices: 2676673--2676699 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2676663 TTATATCTTC
2676673 TTATATAAATTT
1 TTATATAAATTT
2676685 TTATATAAATTT
1 TTATATAAATTT
2676697 TTA
1 TTA
2676700 AAGCAGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATATAAATTT
Found at i:2678449 original size:31 final size:31
Alignment explanation
Indices: 2678411--2678475 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
2678401 TGTAAGATAT
* *
2678411 TTATTTTATTGAGTCTATCGACTA-TACAAAG
1 TTATTTTATTGAGTCCATCAACTATTA-AAAG
2678442 TTATTTTATTGAGTCCATCAACTATTAAAAG
1 TTATTTTATTGAGTCCATCAACTATTAAAAG
2678473 TTA
1 TTA
2678476 CAAAATGGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (31 bp):
TTATTTTATTGAGTCCATCAACTATTAAAAG
Found at i:2682151 original size:22 final size:22
Alignment explanation
Indices: 2682123--2682222 Score: 100
Period size: 22 Copynumber: 4.7 Consensus size: 22
2682113 GAGGGTTTAT
*
2682123 AGTGGTCCTTCGGGATATATCA
1 AGTGGTCCTTCGGGACATATCA
* * *
2682145 AGTGGTCATTCGGGACGTATCC
1 AGTGGTCCTTCGGGACATATCA
*
2682167 AGTGGTCCTTCGGGAC--GT--
1 AGTGGTCCTTCGGGACATATCA
* *
2682185 AGTGGTCCTTTGGGACATATCC
1 AGTGGTCCTTCGGGACATATCA
*
2682207 AGTGGTCCTTAGGGAC
1 AGTGGTCCTTCGGGAC
2682223 GTAATGGTCC
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
18 15 0.23
20 2 0.03
22 48 0.74
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (22 bp):
AGTGGTCCTTCGGGACATATCA
Found at i:2682190 original size:18 final size:18
Alignment explanation
Indices: 2682167--2682240 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
2682157 GGACGTATCC
2682167 AGTGGTCCTTCGGGACGT
1 AGTGGTCCTTCGGGACGT
* *
2682185 AGTGGTCCTTTGGGACATAT
1 AGTGGTCCTTCGGGAC--GT
*
2682205 CCAGTGGTCCTTAGGGACGT
1 --AGTGGTCCTTCGGGACGT
* *
2682225 AATGGTCCTTCAGGAC
1 AGTGGTCCTTCGGGAC
2682241 AAATATTCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
18 28 0.62
20 2 0.04
22 15 0.33
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACGT
Found at i:2682200 original size:40 final size:40
Alignment explanation
Indices: 2682145--2682241 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
2682135 GGATATATCA
* * *
2682145 AGTGGTCATTCGGGACGTATCCAGTGGTCCTTCGGGACGT
1 AGTGGTCCTTCGGGACATATCCAGTGGTCCTTAGGGACGT
*
2682185 AGTGGTCCTTTGGGACATATCCAGTGGTCCTTAGGGACGT
1 AGTGGTCCTTCGGGACATATCCAGTGGTCCTTAGGGACGT
* *
2682225 AATGGTCCTTCAGGACA
1 AGTGGTCCTTCGGGACA
2682242 AATATTCACT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
AGTGGTCCTTCGGGACATATCCAGTGGTCCTTAGGGACGT
Found at i:2683034 original size:40 final size:41
Alignment explanation
Indices: 2682955--2683039 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 41
2682945 TCATTAAACT
*
2682955 TTATATTATTATTATTATTATATTACAATTTATAAAAAATATA
1 TTATATTATTATTATAATTATA-TACAATTTATAAAAAATA-A
*
2682998 TTATATT-TTATTCATAATTATA-A-AATTTATATAAAATAA
1 TTATATTATTATT-ATAATTATATACAATTTATAAAAAATAA
2683037 TTA
1 TTA
2683040 ATTGACATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
39 4 0.10
40 14 0.36
41 1 0.03
42 5 0.13
43 15 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (41 bp):
TTATATTATTATTATAATTATATACAATTTATAAAAAATAA
Found at i:2685400 original size:70 final size:69
Alignment explanation
Indices: 2685273--2685412 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 69
2685263 TCAATTATTG
*
2685273 TGCCTAATAACCGAATATTACCTCATTTTTAAAAAAATCATGATGTGATATTTGAAAAGGATGTT
1 TGCCTAATAACCGAATATTACCTCATTTTTAAAAAAATCATGATATGATATTTGAAAAGGATGTT
2685338 GACC
66 GACC
** * * * *
2685342 TGCCTAATAACCGAATATTGTCTCGTTTTTTTAGAAAATCATGATATGATCTTTGAAAAGGATGT
1 TGCCTAATAACCGAATATTACCTC-ATTTTTAAAAAAATCATGATATGATATTTGAAAAGGATGT
2685407 TGACC
65 TGACC
2685412 T
1 T
2685413 ATTTCAGGAA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
69 22 0.35
70 41 0.65
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (69 bp):
TGCCTAATAACCGAATATTACCTCATTTTTAAAAAAATCATGATATGATATTTGAAAAGGATGTT
GACC
Found at i:2686050 original size:27 final size:25
Alignment explanation
Indices: 2686018--2686092 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
2686008 TTAAAAAATT
* *
2686018 AACAAACATAATTAAAATAATAAAAA
1 AACAAA-ATAAATAAAACAATAAAAA
*
2686044 CAACAAAA-AAATAAAACAGTAAAAA
1 -AACAAAATAAATAAAACAATAAAAA
2686069 AACAAAATAAA-ATAAA-AATAAAAA
1 AACAAAATAAATA-AAACAATAAAAA
2686093 TAAAATATGA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 15 0.36
25 20 0.48
26 1 0.02
27 6 0.14
ACGTcount: A:0.77, C:0.08, G:0.01, T:0.13
Consensus pattern (25 bp):
AACAAAATAAATAAAACAATAAAAA
Found at i:2686061 original size:16 final size:15
Alignment explanation
Indices: 2686040--2686091 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
2686030 TAAAATAATA
2686040 AAAACAACAAAAAAAT
1 AAAACAA-AAAAAAAT
* *
2686056 AAAACAGTAAAAAAAC
1 AAAACA-AAAAAAAAT
*
2686072 AAAATAAAATAAAAAT
1 AAAACAAAA-AAAAAT
2686088 AAAA
1 AAAA
2686092 ATAAAATATG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 2 0.07
16 27 0.93
ACGTcount: A:0.81, C:0.08, G:0.02, T:0.10
Consensus pattern (15 bp):
AAAACAAAAAAAAAT
Found at i:2691209 original size:29 final size:28
Alignment explanation
Indices: 2691161--2691215 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
2691151 ATATTATGTT
*
2691161 TTATAAAATTACTAAAAAACACCAAAAAA
1 TTATAAAATTACCAAAAAAC-CCAAAAAA
*
2691190 TTATAAAATTACCAACAAACCCAAAA
1 TTATAAAATTACCAAAAAACCCAAAA
2691216 TCCCTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.62, C:0.18, G:0.00, T:0.20
Consensus pattern (28 bp):
TTATAAAATTACCAAAAAACCCAAAAAA
Found at i:2691596 original size:16 final size:16
Alignment explanation
Indices: 2691566--2691595 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2691556 TTATAATTTC
2691566 AAAAAATAATTTTTTA
1 AAAAAATAATTTTTTA
2691582 AAAAAAT-ATTTTTT
1 AAAAAATAATTTTTT
2691596 TTTAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAAAATAATTTTTTA
Found at i:2692747 original size:54 final size:55
Alignment explanation
Indices: 2692656--2692847 Score: 194
Period size: 54 Copynumber: 3.5 Consensus size: 55
2692646 TATCTGCAGA
* ** * * * *
2692656 CCTTGGAAGTGAATTGTTCGCAATTTCT-CCAGGTGATGGAATATCTACACCTTC
1 CCTTGGAAGTGGATCATTTGCAACTTCTCCCAGATGATGGAATATCTGCACCTTC
* ** * * *
2692710 CCTTGGAAGTGGATCGTTTGCTGCTTC-CCCAGATGATGGAATATTTGCATCTTA
1 CCTTGGAAGTGGATCATTTGCAACTTCTCCCAGATGATGGAATATCTGCACCTTC
*
2692764 CCTTGGAAGTGGATCATTTGCAACTTCTCCC-GATGATGGAATATCTGCACATTC
1 CCTTGGAAGTGGATCATTTGCAACTTCTCCCAGATGATGGAATATCTGCACCTTC
* * *
2692818 CTTTGGAAGTGAAT-ACTTTGCAGCTTCTCC
1 CCTTGGAAGTGGATCA-TTTGCAACTTCTCC
2692848 AAAAGATGGG
Statistics
Matches: 114, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 110 0.96
55 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.34
Consensus pattern (55 bp):
CCTTGGAAGTGGATCATTTGCAACTTCTCCCAGATGATGGAATATCTGCACCTTC
Found at i:2692856 original size:108 final size:108
Alignment explanation
Indices: 2692655--2692856 Score: 253
Period size: 108 Copynumber: 1.9 Consensus size: 108
2692645 ATATCTGCAG
** * * *
2692655 ACCTTGGAAGTGAATTGTTCGCAATTTCTCCAGGTGATGGAATATCTACACCTTCCCTTGGAAGT
1 ACCTTGGAAGTGAATCATTCGCAACTTCTCCAGATGATGGAATATCTACACATTCCCTTGGAAGT
* * * *
2692720 GGATCGTTTGCTGCTTCCCCAGATGATGGAATATTTGCATCTT
66 GAATCGTTTGCAGCTTCCCCAAAAGATGGAATATTTGCATCTT
* * * * *
2692763 ACCTTGGAAGTGGATCATTTGCAACTTCTCCCGATGATGGAATATCTGCACATTCCTTTGGAAGT
1 ACCTTGGAAGTGAATCATTCGCAACTTCTCCAGATGATGGAATATCTACACATTCCCTTGGAAGT
*
2692828 GAATAC-TTTGCAGCTTCTCCAAAAGATGG
66 GAAT-CGTTTGCAGCTTCCCCAAAAGATGG
2692857 GCCCAATTTC
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 77 0.99
109 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (108 bp):
ACCTTGGAAGTGAATCATTCGCAACTTCTCCAGATGATGGAATATCTACACATTCCCTTGGAAGT
GAATCGTTTGCAGCTTCCCCAAAAGATGGAATATTTGCATCTT
Found at i:2695438 original size:27 final size:26
Alignment explanation
Indices: 2695408--2695492 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 26
2695398 ATGAAATATC
2695408 TGCATCTTCCCATGGAAGTGGATCGTT
1 TGCATCTTCCC-TGGAAGTGGATCGTT
* *
2695435 TGCAGCTTCTTCC-GGCAA-TGGAAT-ATT
1 TGCATCTTC--CCTGG-AAGTGG-ATCGTT
2695462 TGCATCTTCCCTTGGAAGTGGATCGTT
1 TGCATCTTCCC-TGGAAGTGGATCGTT
2695489 TGCA
1 TGCA
2695493 GATTCTTCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 34 0.74
28 4 0.09
29 2 0.04
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (26 bp):
TGCATCTTCCCTGGAAGTGGATCGTT
Found at i:2695563 original size:54 final size:53
Alignment explanation
Indices: 2695386--2695563 Score: 221
Period size: 54 Copynumber: 3.3 Consensus size: 53
2695376 GGATCAATAC
* * *
2695386 CTTCTCCAGATAATGAAATATCTGCATCTTCCCATGGAAGTGGATCGTTTGCAG
1 CTTCTCCAGA-AATGGAATATTTGCATCTTCCCTTGGAAGTGGATCGTTTGCAG
* *
2695440 CTTCTTCCGGCAATGGAATATTTGCATCTTCCCTTGGAAGTGGATCGTTTGCAG
1 CTTC-TCCAGAAATGGAATATTTGCATCTTCCCTTGGAAGTGGATCGTTTGCAG
* * * * * *
2695494 ATTCTTCAGATGATGGAATATTTGCATGTGCCCTTGGAAGTGGATAGTTTGCAG
1 CTTCTCCAGA-AATGGAATATTTGCATCTTCCCTTGGAAGTGGATCGTTTGCAG
2695548 CTTCTCCAGAAGATGG
1 CTTCTCCAGAA-ATGG
2695564 GCGCAATTTG
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 3 0.03
54 98 0.93
55 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (53 bp):
CTTCTCCAGAAATGGAATATTTGCATCTTCCCTTGGAAGTGGATCGTTTGCAG
Found at i:2697539 original size:30 final size:32
Alignment explanation
Indices: 2697503--2697573 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 32
2697493 TTTAAATAGT
*
2697503 TATTATTTTATATT-AAT-ATATTTATGTAAA
1 TATTATTTTATATTAAATAATATTTATATAAA
* *
2697533 TATTATTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTATATT-AAATAATATTTATATAAA
2697566 TATTATTT
1 TATTATTT
2697574 ATTTAGAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 13 0.37
32 3 0.09
33 19 0.54
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (32 bp):
TATTATTTTATATTAAATAATATTTATATAAA
Found at i:2697539 original size:33 final size:34
Alignment explanation
Indices: 2697495--2697577 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 34
2697485 TAGTATTTTT
* *
2697495 TAAATAGTTATTATTTTA-TATTAAT-ATATTTATG
1 TAAATA-TTATTATTTTATTA-AAATAATATTTATA
2697529 TAAATATTATT-TTTTATTAAAATAATATTTATA
1 TAAATATTATTATTTTATTAAAATAATATTTATA
*
2697562 TAATTATTATTTATTT
1 TAAATATTA-TTATTT
2697578 AGAATTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
32 8 0.19
33 23 0.55
34 8 0.19
35 3 0.07
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (34 bp):
TAAATATTATTATTTTATTAAAATAATATTTATA
Found at i:2697739 original size:17 final size:17
Alignment explanation
Indices: 2697717--2697770 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
2697707 AATGTTAATA
2697717 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
2697734 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
2697751 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
2697768 TTT
1 TTT
2697771 TTATAATGTA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:2699323 original size:21 final size:21
Alignment explanation
Indices: 2699293--2699340 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
2699283 GCAGGGGTAC
* * *
2699293 ATGCCCAGCCCTCCATTTCAT
1 ATGCCAAGCCCACCAGTTCAT
2699314 ATGCCAAGCCCACCAGTTCAT
1 ATGCCAAGCCCACCAGTTCAT
2699335 ATGCCA
1 ATGCCA
2699341 TCTCCGCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCAGTTCAT
Found at i:2699370 original size:21 final size:21
Alignment explanation
Indices: 2699344--2699416 Score: 112
Period size: 21 Copynumber: 3.5 Consensus size: 21
2699334 TATGCCATCT
*
2699344 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCTAGC
2699365 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCTAGC
*
2699386 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATTCCTAGC
2699407 CCGCAGGGTT
1 CCGCAGGGTT
2699417 TTATACCATA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 2 0.04
21 44 0.92
22 2 0.04
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCTAGC
Found at i:2699980 original size:34 final size:34
Alignment explanation
Indices: 2699930--2700027 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 34
2699920 AAATGTTTTT
* *
2699930 AAAATACAAATTATATTATTCAAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
2699964 AAAATAAAAATAATATTATTCGAAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
2699998 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
2700028 CATTAAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:2700658 original size:128 final size:127
Alignment explanation
Indices: 2700430--2701036 Score: 1036
Period size: 128 Copynumber: 4.7 Consensus size: 127
2700420 ACAATCCATC
* *
2700430 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGACAATGATAACATATTCTTTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
2700495 GGAAGGCGCGCCCCCGGGAACTCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGC-CCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
2700558 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
2700623 GGAAGACGCCCCCTCGGGAACGCGCCTTCAAGTCCCCTGAGAAATGATAGGTACTGATATGAA
66 GGAAGGCGCCCCC-CGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
2700686 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
2700751 GGAAGGCATG-CCCCCGGGAACACGTCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGC--GCCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
* ** *
2700814 TAGTATCATCGAGGGACATGAGTGACATAATAGGACAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
2700879 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGC-CCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
*
2700942 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGTAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
2701007 GGAAGGCGTGCCCCCGGGAACGCGCCTTCA
66 GGAAGGCG-CCCCCCGGGAACGCGCCTTCA
2701037 TGTGAATAGT
Statistics
Matches: 452, Mismatches: 21, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
126 1 0.00
127 4 0.01
128 442 0.98
129 4 0.01
130 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (127 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
Found at i:2701130 original size:8 final size:8
Alignment explanation
Indices: 2701117--2701157 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
2701107 TCACAAGCTT
2701117 TCAAATTC
1 TCAAATTC
2701125 TCAAATTC
1 TCAAATTC
* *
2701133 CCAAACTC
1 TCAAATTC
2701141 T-AAATTC
1 TCAAATTC
2701148 TCAAATTC
1 TCAAATTC
2701156 TC
1 TC
2701158 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:2708000 original size:2 final size:2
Alignment explanation
Indices: 2707993--2708022 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2707983 TTAAATGAAT
2707993 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2708023 CAGACACACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2709666 original size:17 final size:17
Alignment explanation
Indices: 2709644--2709676 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2709634 ACTATTATTA
2709644 TTAAAATAAAAAATAAT
1 TTAAAATAAAAAATAAT
*
2709661 TTAAAATAAACAATAA
1 TTAAAATAAAAAATAA
2709677 AAAAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAAATAAAAAATAAT
Found at i:2718822 original size:127 final size:126
Alignment explanation
Indices: 2718445--2718824 Score: 584
Period size: 126 Copynumber: 3.0 Consensus size: 126
2718435 CCTCTTAAGC
2718445 TCCATTCTGCTCTTAGGTTTCCTCTCATCTTTATGAGACGACTCCTCAACAAGAAACGCCAAGTC
1 TCCATTCTGCTCTTAGGTTTCCTCTCATCTTTATGAGACGACTCCTCAACAAGAAACGCCAAGTC
* * *
2718510 TTTTGCCAACATTGTCTTCTCATGGCCTTTCTCTACA-TCATCATTGGTTGAAAAACTCGAA
66 TTTTGCCAGCATTGTCTTCTCATGGCCTTTCTTTA-AGTCATCATTGGTTGAAAAACTAGAA
* *
2718571 TCCATTCTGCTGTTAGGTTTCCTTTCATCTTTATGAGACGACTCCTCAACAAGAAACGCCAAGTC
1 TCCATTCTGCTCTTAGGTTTCCTCTCATCTTTATGAGACGACTCCTCAACAAGAAACGCCAAGTC
*
2718636 TTTTACC-GACATTGTCTTCTCATGGCCTTTCTTTAAGTCATCATTGGTTGAAAAACTAGAA
66 TTTTGCCAG-CATTGTCTTCTCATGGCCTTTCTTTAAGTCATCATTGGTTGAAAAACTAGAA
* * * *
2718697 TCCATTCTGCTCTTAGGTTTCCTGTCATCTTTATGAGATGATTCCTCAACAAGTAAATGCCAAGT
1 TCCATTCTGCTCTTAGGTTTCCTCTCATCTTTATGAGACGACTCCTCAACAAG-AAACGCCAAGT
* * * * *
2718762 CCTTTGCCAGCATCGTCTTATCATGGCCTTTCTTTAGGTAATCATTGGTTGAAAAACTAGAA
65 CTTTTGCCAGCATTGTCTTCTCATGGCCTTTCTTTAAGTCATCATTGGTTGAAAAACTAGAA
2718824 T
1 T
2718825 AACACATCAA
Statistics
Matches: 233, Mismatches: 17, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
125 1 0.00
126 166 0.71
127 65 0.28
128 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (126 bp):
TCCATTCTGCTCTTAGGTTTCCTCTCATCTTTATGAGACGACTCCTCAACAAGAAACGCCAAGTC
TTTTGCCAGCATTGTCTTCTCATGGCCTTTCTTTAAGTCATCATTGGTTGAAAAACTAGAA
Found at i:2720868 original size:26 final size:26
Alignment explanation
Indices: 2720839--2720893 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
2720829 ATAGGTGTCG
*
2720839 TCACTAAAATAATTGTTAATAAATTA
1 TCACTAAAATAATTGTTAATAAAATA
2720865 TCACTAAAATAATTGTTAATAAAATA
1 TCACTAAAATAATTGTTAATAAAATA
2720891 TCA
1 TCA
2720894 TTTATAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (26 bp):
TCACTAAAATAATTGTTAATAAAATA
Found at i:2722745 original size:90 final size:90
Alignment explanation
Indices: 2722646--2722825 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
2722636 ATGTGTTAAC
2722646 TACCTAAATGAAAAAAAATATTTTAAATATTTATTTTGATAAAAATATTTAAAATATATAAATAA
1 TACCTAAATGAAAAAAAATATTTTAAATATTTATTTTGATAAAAATATTTAAAATATATAAATAA
2722711 AAATAATATACTTTAATTGTTTTTG
66 AAATAATATACTTTAATTGTTTTTG
2722736 TACCTAAATGAAAAAAAATATTTTAAATATTTATTTTGATAAAAATATTTAAAATATATAAATAA
1 TACCTAAATGAAAAAAAATATTTTAAATATTTATTTTGATAAAAATATTTAAAATATATAAATAA
2722801 AAATAATATACTTTAATTGTTTTTG
66 AAATAATATACTTTAATTGTTTTTG
2722826 AAATAAGAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (90 bp):
TACCTAAATGAAAAAAAATATTTTAAATATTTATTTTGATAAAAATATTTAAAATATATAAATAA
AAATAATATACTTTAATTGTTTTTG
Found at i:2722986 original size:13 final size:13
Alignment explanation
Indices: 2722968--2722998 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2722958 GTTGAGGCAA
2722968 TGACATATTACTC
1 TGACATATTACTC
2722981 TGACATATTACTC
1 TGACATATTACTC
2722994 -GACAT
1 TGACAT
2722999 CCCCGAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (13 bp):
TGACATATTACTC
Found at i:2723998 original size:30 final size:30
Alignment explanation
Indices: 2723964--2724062 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
2723954 AAAAATAAAG
*
2723964 TTTAAGTACTATATTAAACAAAAACAATAA
1 TTTAAGCACTATATTAAACAAAAACAATAA
* * *** **
2723994 TTTAAGCACTAAACATAAA-ATTTACCCT--
1 TTTAAGCACTATA-TTAAACAAAAACAATAA
*
2724022 TTTAAGTACTATATTAAACAAAAACAATAA
1 TTTAAGCACTATATTAAACAAAAACAATAA
2724052 TTTAAGCACTA
1 TTTAAGCACTA
2724063 AACATAAAAT
Statistics
Matches: 48, Mismatches: 17, Indels: 8
0.66 0.23 0.11
Matches are distributed among these distances:
27 4 0.08
28 15 0.31
30 25 0.52
31 4 0.08
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.31
Consensus pattern (30 bp):
TTTAAGCACTATATTAAACAAAAACAATAA
Found at i:2724029 original size:58 final size:58
Alignment explanation
Indices: 2723964--2724081 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
2723954 AAAAATAAAG
2723964 TTTAAGTACTATATTAAACAAAAACAATAATTTAAGCACTAAACATAAAATTTACCCT
1 TTTAAGTACTATATTAAACAAAAACAATAATTTAAGCACTAAACATAAAATTTACCCT
2724022 TTTAAGTACTATATTAAACAAAAACAATAATTTAAGCACTAAACATAAAATTTACCCT
1 TTTAAGTACTATATTAAACAAAAACAATAATTTAAGCACTAAACATAAAATTTACCCT
2724080 TT
1 TT
2724082 AGGGTGTGTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.32
Consensus pattern (58 bp):
TTTAAGTACTATATTAAACAAAAACAATAATTTAAGCACTAAACATAAAATTTACCCT
Found at i:2724896 original size:22 final size:22
Alignment explanation
Indices: 2724871--2724917 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2724861 ACCATTAAGT
* *
2724871 TTTATGTTGACGATTATGTGAA
1 TTTATGTCGAAGATTATGTGAA
*
2724893 TTTATGTCGAAGTTTATGTGAA
1 TTTATGTCGAAGATTATGTGAA
2724915 TTT
1 TTT
2724918 TAAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (22 bp):
TTTATGTCGAAGATTATGTGAA
Found at i:2724908 original size:12 final size:10
Alignment explanation
Indices: 2724884--2724917 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
2724874 ATGTTGACGA
2724884 TTATGTGAAT
1 TTATGTGAAT
2724894 TTATGTCGAAGT
1 TTATGT-GAA-T
2724906 TTATGTGAAT
1 TTATGTGAAT
2724916 TT
1 TT
2724918 TAAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.41
11 6 0.27
12 7 0.32
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (10 bp):
TTATGTGAAT
Found at i:2725460 original size:18 final size:20
Alignment explanation
Indices: 2725418--2725464 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
2725408 ATAGTGGTTA
2725418 ATATATTTCCAAACATTCTT
1 ATATATTTCCAAACATTCTT
2725438 ATATATTTCCAAACATTCTT
1 ATATATTTCCAAACATTCTT
2725458 ATATATT
1 ATATATT
2725465 ATTGTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTTCCAAACATTCTT
Found at i:2727748 original size:3 final size:3
Alignment explanation
Indices: 2727740--2727790 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
2727730 TTTTAAAAAA
* * *
2727740 TAT TAT TA- TAT ATAT TAT TAT TAT TGT TAT TTT TAT TAA TAT TATT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
2727786 TAT TA
1 TAT TA
2727791 CATTTGCAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:2728494 original size:2 final size:2
Alignment explanation
Indices: 2728487--2728528 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
2728477 AACACTATGC
2728487 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT A- AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2728526 AT A
1 AT A
2728529 AGGAAGGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 34 0.92
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:2729777 original size:15 final size:16
Alignment explanation
Indices: 2729754--2729783 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2729744 TATTTATTGA
2729754 TTTATATAATATTTTT
1 TTTATATAATATTTTT
2729770 TTTA-ATAATATTTT
1 TTTATATAATATTTT
2729784 AAATACTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATATAATATTTTT
Found at i:2730151 original size:19 final size:19
Alignment explanation
Indices: 2730112--2730152 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
2730102 TTCTCTAATT
*
2730112 AATTAATTAATTTGAAGTA
1 AATTAATTAATTTCAAGTA
2730131 AATTAATTAATATTCAA-TA
1 AATTAATTAAT-TTCAAGTA
2730150 AAT
1 AAT
2730153 GGATCACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (19 bp):
AATTAATTAATTTCAAGTA
Found at i:2731376 original size:20 final size:20
Alignment explanation
Indices: 2731351--2731388 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2731341 TTTTTACTCT
*
2731351 GCATTTGTATTTGTATTTTC
1 GCATTTGCATTTGTATTTTC
2731371 GCATTTGCATTTGTATTT
1 GCATTTGCATTTGTATTT
2731389 GCATCTTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (20 bp):
GCATTTGCATTTGTATTTTC
Found at i:2731379 original size:26 final size:26
Alignment explanation
Indices: 2731350--2731406 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
2731340 TTTTTTACTC
* * *
2731350 TGCATTTGTATTTGTATTTTCGCATT
1 TGCATTTGTATTTGCATCTTCACATT
2731376 TGCATTTGTATTTGCATCTTCACATT
1 TGCATTTGTATTTGCATCTTCACATT
2731402 TGCAT
1 TGCAT
2731407 AATCATCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.53
Consensus pattern (26 bp):
TGCATTTGTATTTGCATCTTCACATT
Found at i:2734715 original size:13 final size:12
Alignment explanation
Indices: 2734697--2734772 Score: 65
Period size: 13 Copynumber: 6.4 Consensus size: 12
2734687 CATCCATCAG
2734697 AGAAAAGGAAAAA
1 AGAAAA-GAAAAA
2734710 AG--AA-AAAAA
1 AGAAAAGAAAAA
2734719 AG-AAAGAAAAAA
1 AGAAAAG-AAAAA
2734731 AGAAAA-AAAAA
1 AGAAAAGAAAAA
2734742 AGAAAAGAAAAAA
1 AGAAAAG-AAAAA
2734755 AGAAATTA-AAAAA
1 AGAAA--AGAAAAA
2734768 AGAAA
1 AGAAA
2734773 TTAAATGAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
9 7 0.13
10 2 0.04
11 13 0.24
12 7 0.13
13 25 0.45
15 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (12 bp):
AGAAAAGAAAAA
Found at i:2734716 original size:8 final size:8
Alignment explanation
Indices: 2734699--2734759 Score: 67
Period size: 8 Copynumber: 8.0 Consensus size: 8
2734689 TCCATCAGAG
*
2734699 AAAAGGAA
1 AAAAGAAA
2734707 AAAAG--A
1 AAAAGAAA
2734713 AAAA-AAA
1 AAAAGAAA
*
2734720 GAAAGAAA
1 AAAAGAAA
2734728 AAAAGAAA
1 AAAAGAAA
2734736 AAAA-AAA
1 AAAAGAAA
2734743 GAAAAGAAA
1 -AAAAGAAA
2734752 AAAAGAAA
1 AAAAGAAA
2734760 TTAAAAAAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
6 5 0.11
7 7 0.15
8 31 0.67
9 3 0.07
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:2734735 original size:28 final size:27
Alignment explanation
Indices: 2734699--2734772 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 27
2734689 TCCATCAGAG
*
2734699 AAAAGGAAAAAAGAAAA-AAAAGAAAGAA
1 AAAAAGAAAAAA-AAAAGAAAAGAAA-AA
2734727 AAAAAGAAAAAAAAAAGAAAAGAAAAA
1 AAAAAGAAAAAAAAAAGAAAAGAAAAA
* **
2734754 AAGAA-ATTAAAAAAAGAAA
1 AAAAAGAAAAAAAAAAGAAA
2734773 TTAAATGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 12 0.29
27 10 0.24
28 19 0.46
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (27 bp):
AAAAAGAAAAAAAAAAGAAAAGAAAAA
Found at i:2734777 original size:13 final size:12
Alignment explanation
Indices: 2734708--2734772 Score: 87
Period size: 13 Copynumber: 5.2 Consensus size: 12
2734698 GAAAAGGAAA
2734708 AAAGAAAAAAAAG
1 AAAG-AAAAAAAG
2734721 AAAGAAAAAAAG
1 AAAGAAAAAAAG
2734733 AAA-AAAAAAAG
1 AAAGAAAAAAAG
2734744 AAAAGAAAAAAAG
1 -AAAGAAAAAAAG
*
2734757 AAATTAAAAAAAG
1 AAA-GAAAAAAAG
2734770 AAA
1 AAA
2734773 TTAAATGAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
11 8 0.17
12 17 0.35
13 23 0.48
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:2736973 original size:108 final size:108
Alignment explanation
Indices: 2736784--2737001 Score: 436
Period size: 108 Copynumber: 2.0 Consensus size: 108
2736774 GGGAGCTAAA
2736784 ATTTTAACAATGAGAAACTAGTGAAGTCAACTAAGGTTAACAACAGGTTATTGTTAAGCATCTCG
1 ATTTTAACAATGAGAAACTAGTGAAGTCAACTAAGGTTAACAACAGGTTATTGTTAAGCATCTCG
2736849 AAATCATATGGTCCAAATAGCCTTGTTCGAGATCTGATTGGAT
66 AAATCATATGGTCCAAATAGCCTTGTTCGAGATCTGATTGGAT
2736892 ATTTTAACAATGAGAAACTAGTGAAGTCAACTAAGGTTAACAACAGGTTATTGTTAAGCATCTCG
1 ATTTTAACAATGAGAAACTAGTGAAGTCAACTAAGGTTAACAACAGGTTATTGTTAAGCATCTCG
2736957 AAATCATATGGTCCAAATAGCCTTGTTCGAGATCTGATTGGAT
66 AAATCATATGGTCCAAATAGCCTTGTTCGAGATCTGATTGGAT
2737000 AT
1 AT
2737002 GGAGACAAGA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 110 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (108 bp):
ATTTTAACAATGAGAAACTAGTGAAGTCAACTAAGGTTAACAACAGGTTATTGTTAAGCATCTCG
AAATCATATGGTCCAAATAGCCTTGTTCGAGATCTGATTGGAT
Found at i:2737799 original size:40 final size:40
Alignment explanation
Indices: 2737655--2738187 Score: 878
Period size: 40 Copynumber: 13.4 Consensus size: 40
2737645 CTCATTTAAT
*
2737655 ACAGAAGATTTTATCTCACTCAAGATTGCTTTTCCTTGAAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTG-AA
2737696 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
*
2737736 ACAAAAGA-TTTATCTCACTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
*
2737775 ACAGAAGATTTTATCTCACTCAAGA-TATTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
2737814 ACAGAAGATTTTATCTCACTCAAGATTG-TTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
2737853 ACAGAAGATTTT-TCTCACTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
* *
2737892 ACA-AAGATTTTATTTCATTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
*
2737931 ACAGAAGATTTTATCTCACTCAAGATTATTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
* *
2737971 ACAGAAGATTTTATTTCATTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
*
2738011 ACAAAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
* *
2738051 ACAAAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
* *
2738091 ACAAAAGATTTTATCTCACTCAAGATTGCTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
* *
2738131 ACAGAAGATTTTATCTCGCTCAAGATTGGTTTTCCTTGAA
1 ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
*
2738171 ACAAAAGATTTTATCTC
1 ACAGAAGATTTTATCTC
2738188 GCTTGAGATA
Statistics
Matches: 464, Mismatches: 23, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
38 23 0.05
39 141 0.30
40 263 0.57
41 37 0.08
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (40 bp):
ACAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAA
Found at i:2737824 original size:20 final size:20
Alignment explanation
Indices: 2737763--2737825 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
2737753 CTCAAGATTG
2737763 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
* ** *
2737783 TTTTAT-C-TCACTCA-AGATA
1 TTTT-TCCTTGAAACAGA-AGA
2737802 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
2737822 TTTT
1 TTTT
2737826 ATCTCACTCA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
18 2 0.07
19 11 0.37
20 15 0.50
21 2 0.07
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (20 bp):
TTTTTCCTTGAAACAGAAGA
Found at i:2737981 original size:20 final size:20
Alignment explanation
Indices: 2737919--2737982 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
2737909 TTCAAGATTG
2737919 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
* ** **
2737939 TTTTAT-C-TCACTCAAGATTA
1 TTTT-TCCTTGAAAC-AGAAGA
2737959 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
2737979 TTTT
1 TTTT
2737983 ATTTCATTCA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
19 4 0.13
20 22 0.73
21 4 0.13
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (20 bp):
TTTTTCCTTGAAACAGAAGA
Found at i:2738018 original size:23 final size:23
Alignment explanation
Indices: 2737992--2738100 Score: 64
Period size: 23 Copynumber: 5.3 Consensus size: 23
2737982 TATTTCATTC
2737992 AAGATTGTTTTTCCTTGAAACAA
1 AAGATTGTTTTTCCTTGAAACAA
* * **
2738015 AAGA-T-TTTAT-C-T--CACTC
1 AAGATTGTTTTTCCTTGAAACAA
2738032 AAGATTGTTTTTCCTTGAAACAA
1 AAGATTGTTTTTCCTTGAAACAA
* *
2738055 AAGATT-TTATCTCATT----C--
1 AAGATTGTT-TTTCCTTGAAACAA
2738072 AAGATTGTTTTTCCTTGAAACAA
1 AAGATTGTTTTTCCTTGAAACAA
2738095 AAGATT
1 AAGATT
2738101 TTATCTCACT
Statistics
Matches: 60, Mismatches: 12, Indels: 28
0.60 0.12 0.28
Matches are distributed among these distances:
17 17 0.28
18 3 0.05
19 6 0.10
20 2 0.03
21 6 0.10
22 3 0.05
23 23 0.38
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (23 bp):
AAGATTGTTTTTCCTTGAAACAA
Found at i:2738234 original size:19 final size:19
Alignment explanation
Indices: 2738178--2738235 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
2738168 GAAACAAAAG
2738178 ATTTTATCTCGCTTGAGAT
1 ATTTTATCTCGCTTGAGAT
* ** ****
2738197 AGTTTCCCTCGAAACAGAT
1 ATTTTATCTCGCTTGAGAT
2738216 ATTTTATCTCGCTTGAGAT
1 ATTTTATCTCGCTTGAGAT
2738235 A
1 A
2738236 GTTTCCCTTG
Statistics
Matches: 25, Mismatches: 14, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (19 bp):
ATTTTATCTCGCTTGAGAT
Found at i:2738267 original size:36 final size:37
Alignment explanation
Indices: 2737659--2738286 Score: 233
Period size: 40 Copynumber: 16.0 Consensus size: 37
2737649 TTTAATACAG
* ** * *
2737659 AAGATTTTATCTCACTCAAGATTGCTTTTCCTTGAAAAC
1 AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTG-AAAC
* ** * *
2737698 AGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTGAAAC
* ** * *
2737738 AAAAGA-TTTATCTCACTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTGAAAC
* ** * *
2737777 AGAAGATTTTATCTCACTCAAGATATTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
* ** * *
2737816 AGAAGATTTTATCTCACTCAAGATTGTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
* ** * *
2737855 AGAAGATTTT-TCTCACTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTGAAAC
* * * * *
2737894 AAAGATTTTATTTC-ATTCAAGATTGTTTTTCCTTGAAAC
1 -AAGATTTTATCTCGCTT-GAGATAG-TTTCCCTTGAAAC
* ** * *
2737933 AGAAGATTTTATCTCACTCAAGATTATTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGA-TAGTTTCCCTTGAAAC
* * * * *
2737973 AGAAGATTTTATTTC-ATTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTT-GAGATAG-TTTCCCTTGAAAC
* ** * *
2738013 AAAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTGAAAC
* * * *
2738053 AAAAGATTTTATCTC-ATTCAAGATTGTTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTT-GAGATAG-TTTCCCTTGAAAC
* ** * *
2738093 AAAAGATTTTATCTCACTCAAGATTGCTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGATAG-TTTCCCTTGAAAC
** * *
2738133 AGAAGATTTTATCTCGCTCAAGATTGGTTTTCCTTGAAAC
1 --AAGATTTTATCTCGCTTGAGA-TAGTTTCCCTTGAAAC
*
2738173 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 --AAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
*
2738212 AGATATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 A-AGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
* * *
2738250 AA-ATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAC
1 AAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
2738286 A
1 A
2738287 CAAAATTTTG
Statistics
Matches: 528, Mismatches: 45, Indels: 33
0.87 0.07 0.05
Matches are distributed among these distances:
36 32 0.06
37 2 0.00
38 59 0.11
39 151 0.29
40 245 0.46
41 39 0.07
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.40
Consensus pattern (37 bp):
AAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
Found at i:2738275 original size:74 final size:78
Alignment explanation
Indices: 2737655--2738295 Score: 435
Period size: 80 Copynumber: 8.2 Consensus size: 78
2737645 CTCATTTAAT
* * * **
2737655 ACAGAAGATTTTATCTCACTCAAGATT-GCTTTTCCTTGAAAACAGAAGATTTTATCTCACTCAA
1 ACAGAAGATTTTATCTCGCTCAAGATTAG-TTTCCCTTG-AAACA-AAGATTTTATCTCCCTTGA
* * *
2737719 GATTGTTTTTCCTTGAA
63 GATAG-TTTCCCTCGAA
* * * * **
2737736 ACAAAAGA-TTTATCTCACTCAAGATT-GTTTTTCCTTGAAACAGAAGATTTTATCTCACTCAAG
1 ACAGAAGATTTTATCTCGCTCAAGATTAG-TTTCCCTTGAAACA-AAGATTTTATCTCCCTTGAG
* * *
2737799 ATATTTTTCCTTGAA
64 ATAGTTTCCCTCGAA
* * * **
2737814 ACAGAAGATTTTATCTCACTCAAGATT-GTTTTCCTTGAAACAGAAGATTTT-TCTCACTCAAGA
1 ACAGAAGATTTTATCTCGCTCAAGATTAGTTTCCCTTGAAACA-AAGATTTTATCTCCCTTGAGA
* * *
2737877 TTGTTTTTCCTTGAA
65 TAG-TTTCCCTCGAA
* ** * * **
2737892 ACA-AAGATTTTATTTCATTCAAGATT-GTTTTTCCTTGAAACAGAAGATTTTATCTCACTCAAG
1 ACAGAAGATTTTATCTCGCTCAAGATTAG-TTTCCCTTGAAACA-AAGATTTTATCTCCCTTGAG
* * *
2737955 ATTATTTTTCCTTGAA
64 A-TAGTTTCCCTCGAA
* ** * * **
2737971 ACAGAAGATTTTATTTCATTCAAGATT-GTTTTTCCTTGAAACAAAAGATTTTATCTCACTCAAG
1 ACAGAAGATTTTATCTCGCTCAAGATTAG-TTTCCCTTGAAAC-AAAGATTTTATCTCCCTTGAG
* * *
2738035 ATTGTTTTTCCTTGAA
64 ATAG-TTTCCCTCGAA
* ** * * **
2738051 ACAAAAGATTTTATCTCATTCAAGATT-GTTTTTCCTTGAAACAAAAGATTTTATCTCACTCAAG
1 ACAGAAGATTTTATCTCGCTCAAGATTAG-TTTCCCTTGAAAC-AAAGATTTTATCTCCCTTGAG
* * *
2738115 ATTGCTTTTCCTTGAA
64 ATAG-TTTCCCTCGAA
* * *
2738131 ACAGAAGATTTTATCTCGCTCAAGATTGGTTTTCCTTGAAACAAAAGATTTTATCTCGCTTGAGA
1 ACAGAAGATTTTATCTCGCTCAAGATTAGTTTCCCTTGAAAC-AAAGATTTTATCTCCCTTGAGA
2738196 TAGTTTCCCTCGAA
65 TAGTTTCCCTCGAA
* ** *
2738210 ACAG-ATATTTTATCTCGCTTGAGA-TAGTTTCCCTTGAAAC-AA-ATTTTGTCTCCCTTGAGAT
1 ACAGAAGATTTTATCTCGCTCAAGATTAGTTTCCCTTGAAACAAAGATTTTATCTCCCTTGAGAT
* *
2738271 AGTTTCTCTTGAA
66 AGTTTCCCTCGAA
* *
2738284 ACACAAAATTTT
1 ACAGAAGATTTT
2738296 GAGAACATTT
Statistics
Matches: 514, Mismatches: 36, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
74 31 0.06
75 8 0.02
77 49 0.10
78 95 0.18
79 87 0.17
80 235 0.46
81 9 0.02
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (78 bp):
ACAGAAGATTTTATCTCGCTCAAGATTAGTTTCCCTTGAAACAAAGATTTTATCTCCCTTGAGAT
AGTTTCCCTCGAA
Found at i:2738334 original size:66 final size:64
Alignment explanation
Indices: 2738228--2738396 Score: 214
Period size: 66 Copynumber: 2.6 Consensus size: 64
2738218 TTTATCTCGC
* *
2738228 TTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACACAAAAT
1 TTGAGACAATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAA-AC-AAAT
2738293 T
64 T
** * * *
2738294 TTGAGA-ACATTTCCCTTGAAATGAATTTTGTCTCCCTTGAGATAGTTTCTTTTGGAAACAAGTT
1 TTGAGACA-ATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAACAAATT
* *
2738358 TTGAGACAATTTCTCTTGAAACAAAGTTTTATCTCCCTT
1 TTGAGACAATTTCCCTTGAAACAAA-TTTTGTCTCCCTT
2738397 AAAATGGTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 24 0.27
65 16 0.18
66 50 0.56
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (64 bp):
TTGAGACAATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAACAAATT
Found at i:2738370 original size:28 final size:28
Alignment explanation
Indices: 2738330--2738387 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
2738320 TTTGTCTCCC
* * *
2738330 TTGAGATAGTTTCTTTTGGAAAC-AAGTT
1 TTGAGACAATTTCTCTT-GAAACAAAGTT
2738358 TTGAGACAATTTCTCTTGAAACAAAGTT
1 TTGAGACAATTTCTCTTGAAACAAAGTT
2738386 TT
1 TT
2738388 ATCTCCCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (28 bp):
TTGAGACAATTTCTCTTGAAACAAAGTT
Found at i:2738522 original size:73 final size:73
Alignment explanation
Indices: 2738358--2738522 Score: 222
Period size: 73 Copynumber: 2.3 Consensus size: 73
2738348 GAAACAAGTT
* *
2738358 TTGAGACAATTTCTCTTGAAACAAAGTTTTATCTCCCTTAAAATGGTTTTTCTTAAAATCAACTT
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTATCTCCCTTAAAATGGTTTTTCTTAAAACCAACTT
2738423 CGTCTCGC
66 CGTCTCGC
* * * * *
2738431 TTGAGACAGTTTATCTTGAAACAAAGTTTTGTCTCCCTTGAGATGGTTTTTCTTAAAACCTACTT
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTATCTCCCTTAAAATGGTTTTTCTTAAAACCAACTT
* * *
2738496 CTTTTTGC
66 CGTCTCGC
* *
2738504 TTGAGACAGTCTCGCTTGA
1 TTGAGACAGTTTCTCTTGA
2738523 GACAGTTTTC
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 79 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (73 bp):
TTGAGACAGTTTCTCTTGAAACAAAGTTTTATCTCCCTTAAAATGGTTTTTCTTAAAACCAACTT
CGTCTCGC
Found at i:2739650 original size:20 final size:20
Alignment explanation
Indices: 2739598--2739652 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
2739588 TTCAGTGGAG
2739598 AGTTCATAAT--G-AGAAGA
1 AGTTCATAATGAGAAGAAGA
* *
2739615 A-CTCATAACGAGGAAGAAGA
1 AGTTCATAATGA-GAAGAAGA
2739635 AGTTCATAATGAGAAGAA
1 AGTTCATAATGAGAAGAA
2739653 CTCATTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 6 0.21
17 1 0.03
19 1 0.03
20 13 0.45
21 8 0.28
ACGTcount: A:0.49, C:0.09, G:0.24, T:0.18
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAAGA
Found at i:2739650 original size:114 final size:113
Alignment explanation
Indices: 2739450--2739666 Score: 296
Period size: 114 Copynumber: 1.9 Consensus size: 113
2739440 CTTTCAAGTC
* *
2739450 CACAGAAGGAGGTGAACCAACATTTCCAGAAGAGTCATAATGAGAAGAACTCATCCAATGAGAAG
1 CACAGAAAGAGGTGAACCAACATTTCCAGAAGAGTCATAATGAGAAGAACTCAT-CAACGAGAAG
*
2739515 AAGAAGTTCATAATGAGAGAAGAACT-GTTCAACCTTGGTTTGATTCCAT
65 AAGAAGTTCATAAT-AGAGAAGAACTCATTCAACCTTGGTTTGATTCCAT
* * * *
2739564 CACAGAAAGAGGTGGATCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCAT-AACGAGG
1 CACAGAAAGAGGTGAACCAACATTTCCA--GAAGAG-TCATAATGAGAAGAACTCATCAACGA-G
2739628 AAGAAGAAGTTCATAAT-GAGAAGAACTCATTCAACCTTG
62 AAGAAGAAGTTCATAATAGAGAAGAACTCATTCAACCTTG
2739667 CATAACATTT
Statistics
Matches: 91, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
114 34 0.37
115 14 0.15
116 23 0.25
117 20 0.22
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.22
Consensus pattern (113 bp):
CACAGAAAGAGGTGAACCAACATTTCCAGAAGAGTCATAATGAGAAGAACTCATCAACGAGAAGA
AGAAGTTCATAATAGAGAAGAACTCATTCAACCTTGGTTTGATTCCAT
Found at i:2740023 original size:82 final size:83
Alignment explanation
Indices: 2739871--2740028 Score: 187
Period size: 82 Copynumber: 1.9 Consensus size: 83
2739861 TCACAGCAAT
* **
2739871 TGTCATCACTCGACCTGATCTCCTCATCATGTAGGATCCATGTCAAACCCAGATAACTAGCCGTC
1 TGTCATCACTCGACCTGATCTCCTCATCATGTAGGATCCATGTCAAACCCAGATAACAAAACGTC
2739936 CTCATCACGTAGGAACTG
66 CTCATCACGTAGGAACTG
* * * * **
2739954 TGTCATCACT-GATCTGATCTCCTCATTATGTAGGA-GCAGTGTCAATCCTTGATAACCAAAAC-
1 TGTCATCACTCGACCTGATCTCCTCATCATGTAGGATCCA-TGTCAAACCCAGATAA-CAAAACG
*
2740016 TCTTCATCACGTA
64 TCCTCATCACGTA
2740029 TGAGCTGTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
81 2 0.03
82 48 0.76
83 13 0.21
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (83 bp):
TGTCATCACTCGACCTGATCTCCTCATCATGTAGGATCCATGTCAAACCCAGATAACAAAACGTC
CTCATCACGTAGGAACTG
Found at i:2740468 original size:3 final size:3
Alignment explanation
Indices: 2740460--2740515 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
2740450 TTTTAAAAAA
* * *
2740460 TAT TAT TAT TAT ATAT TAT TAT TAT TAT TGT TAT TTT TAT TAA TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2740506 TATT TAT TAT
1 TA-T TAT TAT
2740516 ATTTGCAGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:2742477 original size:17 final size:16
Alignment explanation
Indices: 2742451--2742491 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
2742441 TTTTTTATAA
*
2742451 TTAATTATTTATTGAT
1 TTAATAATTTATTGAT
*
2742467 TTATATAATTTATTGTT
1 TTA-ATAATTTATTGAT
2742484 TTAATAAT
1 TTAATAAT
2742492 ATTTTAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (16 bp):
TTAATAATTTATTGAT
Found at i:2742872 original size:19 final size:19
Alignment explanation
Indices: 2742833--2742873 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
2742823 TTCTCTAATT
*
2742833 AATTAATTAATTTGAAGTA
1 AATTAATTAATTTCAAGTA
2742852 AATTAATTAATATTCAA-TA
1 AATTAATTAAT-TTCAAGTA
2742871 AAT
1 AAT
2742874 GGATCACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (19 bp):
AATTAATTAATTTCAAGTA
Found at i:2744231 original size:24 final size:26
Alignment explanation
Indices: 2744197--2744249 Score: 76
Period size: 24 Copynumber: 2.1 Consensus size: 26
2744187 GGCTTGTAAA
2744197 AATTACAAAATAATAA-TATAATT-AT
1 AATTACAAAAT-ATAATTATAATTAAT
2744222 AATTA-AAAATATAATTATAATTAAT
1 AATTACAAAATATAATTATAATTAAT
2744247 AAT
1 AAT
2744250 ATTTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 4 0.15
24 12 0.46
25 10 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
AATTACAAAATATAATTATAATTAAT
Found at i:2744234 original size:18 final size:18
Alignment explanation
Indices: 2744211--2744251 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
2744201 ACAAAATAAT
2744211 AATATAATTATAATTAAA
1 AATATAATTATAATTAAA
*
2744229 AATATAATTATAATTAAT
1 AATATAATTATAATTAAA
2744247 AATAT
1 AATAT
2744252 TTAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATAATTATAATTAAA
Found at i:2745822 original size:25 final size:25
Alignment explanation
Indices: 2745794--2745850 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
2745784 GTCTTGAACC
2745794 CTTTTTATTTATTTATTATT-TTTTT
1 CTTTTTATTTATTTATT-TTCTTTTT
* *
2745819 CTTTTTCTTTTTTTATTTTCTTTTT
1 CTTTTTATTTATTTATTTTCTTTTT
2745844 CTATTTT
1 CT-TTTT
2745851 CTTCATTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 22 0.79
26 4 0.14
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.81
Consensus pattern (25 bp):
CTTTTTATTTATTTATTTTCTTTTT
Found at i:2745825 original size:6 final size:6
Alignment explanation
Indices: 2745814--2745864 Score: 57
Period size: 6 Copynumber: 7.8 Consensus size: 6
2745804 ATTTATTATT
*
2745814 TTTTTC TTTTTC TTTTTT TATTTTC TTTTTC TATTTTC TTCATTTC TTTTT
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC T-TTTTC TT--TTTC TTTTT
2745865 TTCCCATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 22 0.56
7 11 0.28
8 6 0.15
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:2745831 original size:13 final size:14
Alignment explanation
Indices: 2745813--2745853 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
2745803 TATTTATTAT
2745813 TTTTTTCT-TTTTC
1 TTTTTTCTATTTTC
2745826 TTTTTT-TATTTTC
1 TTTTTTCTATTTTC
2745839 -TTTTTCTATTTTC
1 TTTTTTCTATTTTC
2745852 TT
1 TT
2745854 CATTTCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.24
13 18 0.72
14 1 0.04
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTCTATTTTC
Found at i:2745837 original size:19 final size:22
Alignment explanation
Indices: 2745815--2745864 Score: 72
Period size: 19 Copynumber: 2.5 Consensus size: 22
2745805 TTTATTATTT
2745815 TTTTCTTTTTCT-TTTT-TT-A
1 TTTTCTTTTTCTATTTTCTTCA
2745834 TTTTCTTTTTCTATTTTCTTCA
1 TTTTCTTTTTCTATTTTCTTCA
2745856 -TTTCTTTTT
1 TTTTCTTTTT
2745865 TTCCCATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.43
20 4 0.14
21 11 0.39
22 1 0.04
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTCTTTTTCTATTTTCTTCA
Found at i:2745863 original size:26 final size:25
Alignment explanation
Indices: 2745794--2745863 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
2745784 GTCTTGAACC
* *
2745794 CTTTTTATTTATTTATTATT-TTTTT
1 CTTTTTCTTCATTTATT-TTCTTTTT
**
2745819 CTTTTTCTTTTTTTATTTTCTTTTT
1 CTTTTTCTTCATTTATTTTCTTTTT
*
2745844 CTATTTTCTTCATTTCTTTT
1 CT-TTTTCTTCATTTATTTT
2745864 TTTCCCATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 2 0.05
25 22 0.58
26 14 0.37
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (25 bp):
CTTTTTCTTCATTTATTTTCTTTTT
Found at i:2745893 original size:19 final size:19
Alignment explanation
Indices: 2745815--2745912 Score: 69
Period size: 19 Copynumber: 5.2 Consensus size: 19
2745805 TTTATTATTT
* *
2745815 TTTTCTTTTTCTTTTTTTA
1 TTTTCATTTTCTTTTTTTC
* *
2745834 TTTTCTTTTTC-TATTTTC
1 TTTTCATTTTCTTTTTTTC
2745852 --TTCA-TTTCTTTTTTTCC
1 TTTTCATTTTCTTTTTTT-C
** *
2745869 CATTCATTTTCATTTTTTC
1 TTTTCATTTTCTTTTTTTC
2745888 TTTTCATTCTTCTTTCTTTTTC
1 TTTTCATT-TTC-TT-TTTTTC
2745910 TTT
1 TTT
2745913 CTTCTGGTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
15 4 0.06
16 8 0.13
17 1 0.02
18 5 0.08
19 22 0.35
20 13 0.21
21 1 0.02
22 9 0.14
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTCATTTTCTTTTTTTC
Found at i:2745910 original size:13 final size:13
Alignment explanation
Indices: 2745816--2745911 Score: 54
Period size: 13 Copynumber: 6.9 Consensus size: 13
2745806 TTATTATTTT
2745816 TTTCTTTTTCTT-
1 TTTCTTTTTCTTC
*
2745828 TTTTTATTTTCTT-
1 TTTCT-TTTTCTTC
2745841 TTTCTATTTTCTTC
1 TTTCT-TTTTCTTC
2745855 ATTTCTTTTT-TTCCC
1 -TTTCTTTTTCTT--C
* * *
2745870 ATTCATTTTCATTT
1 TTTCTTTTTC-TTC
2745884 TTTCTTTTCATTCTTC
1 TTTC-TTT--TTCTTC
2745900 TTTCTTTTTCTT
1 TTTCTTTTTCTT
2745912 TCTTCTGGTG
Statistics
Matches: 66, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
12 4 0.06
13 26 0.39
14 14 0.21
15 11 0.17
16 8 0.12
17 3 0.05
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTCTTTTTCTTC
Found at i:2745914 original size:17 final size:16
Alignment explanation
Indices: 2745884--2745917 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
2745874 ATTTTCATTT
2745884 TTTCTTTTCATTCTTC
1 TTTCTTTTCATTCTTC
*
2745900 TTTCTTTTTCTTTCTTC
1 TTTC-TTTTCATTCTTC
2745917 T
1 T
2745918 GGTGAAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCTTTTCATTCTTC
Done.