Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 23 of 39
Found at i:4482879 original size:24 final size:24
Alignment explanation
Indices: 4482802--4482903 Score: 106
Period size: 23 Copynumber: 4.3 Consensus size: 24
4482792 AATTGGCCTC
4482802 CAATGATGTTGATGGACGTTGCTT
1 CAATGATGTTGATGGACGTTGCTT
*
4482826 CAATGATGAGTGAAT-GACG--GCTT
1 CAATGATG-TTG-ATGGACGTTGCTT
*
4482849 CAATGATGTTGATGGACGTTGGTT
1 CAATGATGTTGATGGACGTTGCTT
* *
4482873 CAATGATGAGTGAAGGACG--GCTT
1 CAATGATG-TTGATGGACGTTGCTT
4482896 CAATGATG
1 CAATGATG
4482904 ATGAAATGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
21 2 0.03
22 6 0.09
23 23 0.35
24 19 0.29
25 14 0.21
26 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.30
Consensus pattern (24 bp):
CAATGATGTTGATGGACGTTGCTT
Found at i:4484444 original size:12 final size:11
Alignment explanation
Indices: 4484400--4484455 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
4484390 AGAAACGTGT
4484400 AAAAAGAAAGC
1 AAAAAGAAAGC
*
4484411 AAAAGGAAAGAC
1 AAAAAGAAAG-C
**
4484423 AAAATCAAAGC
1 AAAAAGAAAGC
4484434 AAGAAAGAAAG-
1 AA-AAAGAAAGC
4484445 AAAAAGCAAAG
1 AAAAAG-AAAG
4484456 GTTGTTTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
10 4 0.11
11 18 0.49
12 15 0.41
ACGTcount: A:0.70, C:0.09, G:0.20, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAGC
Found at i:4488634 original size:10 final size:10
Alignment explanation
Indices: 4488619--4488643 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4488609 TCATCCATTT
4488619 ATGCATATTC
1 ATGCATATTC
4488629 ATGCATATTC
1 ATGCATATTC
4488639 ATGCA
1 ATGCA
4488644 AGAAGCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (10 bp):
ATGCATATTC
Found at i:4489613 original size:12 final size:11
Alignment explanation
Indices: 4489569--4489624 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
4489559 AGAAACGTGT
4489569 AAAAAGAAAGC
1 AAAAAGAAAGC
*
4489580 AAAAGGAAAGAC
1 AAAAAGAAAG-C
**
4489592 AAAATCAAAGC
1 AAAAAGAAAGC
4489603 AAGAAAGAAAG-
1 AA-AAAGAAAGC
4489614 AAAAAGCAAAG
1 AAAAAG-AAAG
4489625 GTTGTTTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
10 4 0.11
11 18 0.49
12 15 0.41
ACGTcount: A:0.70, C:0.09, G:0.20, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAGC
Found at i:4497405 original size:32 final size:32
Alignment explanation
Indices: 4497359--4497422 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
4497349 CCTGCAGGCC
* *
4497359 GAAGACCGGGCACACAACATTCCGGCATCGAT
1 GAAGACCGGACACACAACATTCCAGCATCGAT
*
4497391 GAAGACCTGACACACAACATTCCAGCATCGAT
1 GAAGACCGGACACACAACATTCCAGCATCGAT
4497423 AATTCCATCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.20, T:0.14
Consensus pattern (32 bp):
GAAGACCGGACACACAACATTCCAGCATCGAT
Found at i:4502366 original size:20 final size:20
Alignment explanation
Indices: 4502343--4502385 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
4502333 TTTTTAAAAT
4502343 ATTAAAATAATT-TATTTATA
1 ATTAAAAT-ATTATATTTATA
*
4502363 ATTAAAATATTATTTTTATA
1 ATTAAAATATTATATTTATA
4502383 ATT
1 ATT
4502386 TTATTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTAAAATATTATATTTATA
Found at i:4502400 original size:49 final size:48
Alignment explanation
Indices: 4502287--4502400 Score: 108
Period size: 50 Copynumber: 2.3 Consensus size: 48
4502277 TTATTACAAA
* *
4502287 TATTAAATACAAATAATATTATTTATCATAAAACCTAATATTTTTATTTT
1 TATT-AATAAAAATAATATTATTTATAATAAAA-CTAATATTTTTATTTT
* *
4502337 TA-AAATATTAAAATAAT-TTATTTATAATTAAAA-TATTATTTTTATAATTT
1 TATTAATA--AAAATAATATTATTTATAA-TAAAACTAATATTTTTAT--TTT
4502387 TATTAATAAAAATA
1 TATTAATAAAAATA
4502401 TTAATATTGG
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
48 15 0.28
49 15 0.28
50 19 0.36
51 4 0.08
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (48 bp):
TATTAATAAAAATAATATTATTTATAATAAAACTAATATTTTTATTTT
Found at i:4502721 original size:22 final size:23
Alignment explanation
Indices: 4502693--4502739 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
4502683 TTGATTATTT
4502693 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
4502715 TATTATATTATTAGAAATATTAA
1 TATTATAATATTAAAAATATTAA
4502738 TA
1 TA
4502740 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:4502744 original size:22 final size:22
Alignment explanation
Indices: 4502701--4502744 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
4502691 TTTATTATAA
*
4502701 TATTAAAAATATAATATTATAT
1 TATTAAAAATATAATATAATAT
*
4502723 TATTAGAAATATTAATA-AATAT
1 TATTAAAAATA-TAATATAATAT
4502745 ATTTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TATTAAAAATATAATATAATAT
Found at i:4507427 original size:24 final size:24
Alignment explanation
Indices: 4507374--4507427 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
4507364 CAGTTGAAAC
*
4507374 TGCCACGTAGAATTTACACCAAGG
1 TGCCACGTAGAATATACACCAAGG
* *
4507398 TACCACGTAGAATATGCACCGAA-G
1 TGCCACGTAGAATATACACC-AAGG
4507422 TGCCAC
1 TGCCAC
4507428 ATAAAATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (24 bp):
TGCCACGTAGAATATACACCAAGG
Found at i:4507443 original size:24 final size:24
Alignment explanation
Indices: 4507394--4507507 Score: 115
Period size: 24 Copynumber: 4.7 Consensus size: 24
4507384 AATTTACACC
* *
4507394 AAGGTACCACGTAGAATATG-CACCG
1 AAGG-ACCACATAGAATTTGTC-CCG
*
4507419 AAGTG-CCACATAAAATTTGTCCCG
1 AAG-GACCACATAGAATTTGTCCCG
* * * *
4507443 AAGGACCGCTTATAATTTGTCTCG
1 AAGGACCACATAGAATTTGTCCCG
*
4507467 AAGGACCACTTAGAATTTGTCCCG
1 AAGGACCACATAGAATTTGTCCCG
4507491 AAGGACCACATAGAATT
1 AAGGACCACATAGAATT
4507508 ATTTCGAAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
23 1 0.01
24 69 0.92
25 4 0.05
26 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (24 bp):
AAGGACCACATAGAATTTGTCCCG
Found at i:4507519 original size:23 final size:24
Alignment explanation
Indices: 4507424--4507520 Score: 108
Period size: 24 Copynumber: 4.1 Consensus size: 24
4507414 CACCGAAGTG
* *
4507424 CCACATAAAATTTGTCCCGAAGGA
1 CCACATAGAATTTGTCTCGAAGGA
* * *
4507448 CCGCTTATAATTTGTCTCGAAGGA
1 CCACATAGAATTTGTCTCGAAGGA
* *
4507472 CCACTTAGAATTTGTCCCGAAGGA
1 CCACATAGAATTTGTCTCGAAGGA
4507496 CCACATAGAATTAT-T-TCGAAGGA
1 CCACATAGAATT-TGTCTCGAAGGA
4507519 CC
1 CC
4507521 GCGTAGAACC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.14
24 53 0.84
25 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (24 bp):
CCACATAGAATTTGTCTCGAAGGA
Found at i:4507756 original size:57 final size:59
Alignment explanation
Indices: 4507601--4507766 Score: 182
Period size: 58 Copynumber: 2.9 Consensus size: 59
4507591 CCATTTAATT
* * * * * * *
4507601 ATTTCACATAGTATTA-TTCAATTTATCATTTGTTCACATAAAAC-ATATACTCAGAGT
1 ATTTCACATAGCATTACCTAAATTTATTATTTATTCACATAGAACAATATACTCAGAGC
*
4507658 ATTTCACATAGCATTACCTAAATTTATTATTTATTCACATAGAACAAT-TACTCATAGC
1 ATTTCACATAGCATTACCTAAATTTATTATTTATTCACATAGAACAATATACTCAGAGC
* * *
4507716 ATTTCATATCGCATTA-CT-CATCTTATTATTTATTCACATAGAAC-ATATACT
1 ATTTCACATAGCATTACCTAAAT-TTATTATTTATTCACATAGAACAATATACT
4507767 TATAGTGTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
56 4 0.04
57 43 0.46
58 45 0.48
59 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.40
Consensus pattern (59 bp):
ATTTCACATAGCATTACCTAAATTTATTATTTATTCACATAGAACAATATACTCAGAGC
Found at i:4507778 original size:57 final size:56
Alignment explanation
Indices: 4507600--4507820 Score: 210
Period size: 57 Copynumber: 3.9 Consensus size: 56
4507590 ACCATTTAAT
* * * * * *
4507600 TATTTCACATAGTATTATTCAATTTATCATTTGTTCACATAAAACATATACTCAGAG
1 TATTTCATATAGCATTACTC-ATTTATCATTTATTCACATAGAACATATACTCATAG
* * *
4507657 TATTTCACATAGCATTACCTAAATTTATTATTTATTCACATAGAACA-ATTACTCATAG
1 TATTTCATATAGCATTA-CT-CATTTATCATTTATTCACATAGAACATA-TACTCATAG
* * * *
4507715 CATTTCATATCGCATTACTCATCTTATTATTTATTCACATAGAACATATACTTATAG
1 TATTTCATATAGCATTACTCAT-TTATCATTTATTCACATAGAACATATACTCATAG
* * * * * *
4507772 TGTTTCATATAACATTATTCAAATTATCATTTGTTCATATAGAACATAT
1 TATTTCATATAGCATTACTC-ATTTATCATTTATTCACATAGAACATAT
4507821 TCACATAAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
56 2 0.01
57 88 0.64
58 47 0.34
ACGTcount: A:0.36, C:0.16, G:0.06, T:0.42
Consensus pattern (56 bp):
TATTTCATATAGCATTACTCATTTATCATTTATTCACATAGAACATATACTCATAG
Found at i:4508258 original size:20 final size:20
Alignment explanation
Indices: 4508211--4508250 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
4508201 TCAGACTGAA
*
4508211 CAATATTGGTACTCTACACC
1 CAATATCGGTACTCTACACC
4508231 CAATATCGGTACTCTACACC
1 CAATATCGGTACTCTACACC
4508251 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.33, G:0.10, T:0.28
Consensus pattern (20 bp):
CAATATCGGTACTCTACACC
Found at i:4508263 original size:20 final size:20
Alignment explanation
Indices: 4508220--4508263 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
4508210 ACAATATTGG
*
4508220 TACTCTACACCCAATATCGG
1 TACTCTACACCCAATATCGA
* *
4508240 TACTCTACACCTAGTATCGA
1 TACTCTACACCCAATATCGA
4508260 TACT
1 TACT
4508264 TCCCTTCTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.30
Consensus pattern (20 bp):
TACTCTACACCCAATATCGA
Found at i:4514746 original size:14 final size:13
Alignment explanation
Indices: 4514710--4514762 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
4514700 TTTCTCGATC
4514710 ATTGTCTTTTAAT
1 ATTGTCTTTTAAT
* * *
4514723 ATTTTTTTTTATTT
1 ATTGTCTTTTA-AT
4514737 ATTGTCTTTTAAT
1 ATTGTCTTTTAAT
4514750 ATT-T-TTTTAAT
1 ATTGTCTTTTAAT
4514761 AT
1 AT
4514763 GGGGTAAGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
11 9 0.27
12 1 0.03
13 13 0.39
14 10 0.30
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (13 bp):
ATTGTCTTTTAAT
Found at i:4518091 original size:2 final size:2
Alignment explanation
Indices: 4518084--4518111 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4518074 CTCAAAAATA
4518084 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4518112 TAACAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4522034 original size:6 final size:7
Alignment explanation
Indices: 4522019--4522046 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
4522009 TATAAAACTT
4522019 AAAATAA
1 AAAATAA
4522026 AAAATAA
1 AAAATAA
4522033 AAAATAA
1 AAAATAA
4522040 AAAATAA
1 AAAATAA
4522047 CTCTTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:4524632 original size:23 final size:23
Alignment explanation
Indices: 4524606--4524692 Score: 86
Period size: 23 Copynumber: 3.8 Consensus size: 23
4524596 TATAAATGTA
* *
4524606 CCGAAAGACCACATAGTATTGTC
1 CCGAAAGACCACGTAGAATTGTC
* * *
4524629 CCGAAGGACCGCGTAGAAATGTC
1 CCGAAAGACCACGTAGAATTGTC
*
4524652 TCG-AAGAACCACGTAGAATTGTC
1 CCGAAAG-ACCACGTAGAATTGTC
* *
4524675 CCGAATGACCGCGTAGAA
1 CCGAAAGACCACGTAGAA
4524693 CCCTCGACTC
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
22 2 0.04
23 46 0.92
24 2 0.04
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.17
Consensus pattern (23 bp):
CCGAAAGACCACGTAGAATTGTC
Found at i:4528273 original size:10 final size:10
Alignment explanation
Indices: 4528258--4528300 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
4528248 TTCATCACAC
4528258 CAAATCCTCT
1 CAAATCCTCT
4528268 CAAATCCTCT
1 CAAATCCTCT
* *
4528278 CAACTTCTCT
1 CAAATCCTCT
4528288 CAAATCCTCT
1 CAAATCCTCT
4528298 CAA
1 CAA
4528301 CTTAAGGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.30, C:0.40, G:0.00, T:0.30
Consensus pattern (10 bp):
CAAATCCTCT
Found at i:4528289 original size:20 final size:20
Alignment explanation
Indices: 4528264--4528303 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
4528254 ACACCAAATC
4528264 CTCTCAAATCCTCTCAACTT
1 CTCTCAAATCCTCTCAACTT
4528284 CTCTCAAATCCTCTCAACTT
1 CTCTCAAATCCTCTCAACTT
4528304 AAGGTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.40, G:0.00, T:0.35
Consensus pattern (20 bp):
CTCTCAAATCCTCTCAACTT
Found at i:4530424 original size:12 final size:12
Alignment explanation
Indices: 4530392--4530426 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4530382 ATCTGCTCCT
*
4530392 GACGACGACGAC
1 GACGACGATGAC
4530404 GACGACGATGAC
1 GACGACGATGAC
*
4530416 GATGACGATGA
1 GACGACGATGA
4530427 TGGTGATGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.23, G:0.34, T:0.09
Consensus pattern (12 bp):
GACGACGATGAC
Found at i:4532777 original size:33 final size:33
Alignment explanation
Indices: 4532735--4532802 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
4532725 GCGAACCATC
4532735 CAATTGCATCCGTTTTCACGTTAGGCATAGTGA
1 CAATTGCATCCGTTTTCACGTTAGGCATAGTGA
4532768 CAATTGCATCCGTTTTCACGTTAGGCATAGTGA
1 CAATTGCATCCGTTTTCACGTTAGGCATAGTGA
4532801 CA
1 CA
4532803 TACATATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (33 bp):
CAATTGCATCCGTTTTCACGTTAGGCATAGTGA
Found at i:4533885 original size:73 final size:74
Alignment explanation
Indices: 4533761--4533907 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 74
4533751 TGGTGTTGGA
4533761 AATCTGTACTGAAGCGACGACATTCTTCTAGTACTTCCAACATGAACATTTCTTGAAATCTTCGT
1 AATCTGTACTGAAGCGACGACATTCTTCTAGTACTTCCAACATGAACATTTCTTGAAATCTTCGT
4533826 TATCAACTC
66 TATCAACTC
4533835 AATC-GTACTGAAGCGACGACATTCTTCTAGTACTTCCAACATGAACATTTCTTGAAATCTTCGT
1 AATCTGTACTGAAGCGACGACATTCTTCTAGTACTTCCAACATGAACATTTCTTGAAATCTTCGT
4533899 TATCAACTC
66 TATCAACTC
4533908 CTCAAGCGTT
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 69 0.95
74 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (74 bp):
AATCTGTACTGAAGCGACGACATTCTTCTAGTACTTCCAACATGAACATTTCTTGAAATCTTCGT
TATCAACTC
Found at i:4535008 original size:9 final size:9
Alignment explanation
Indices: 4534992--4535021 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
4534982 AAAGCTTATT
4534992 TCCTTCTTC
1 TCCTTCTTC
*
4535001 TTCTTCTTC
1 TCCTTCTTC
4535010 TCCTTCTTC
1 TCCTTCTTC
4535019 TCC
1 TCC
4535022 CCGTAAGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (9 bp):
TCCTTCTTC
Found at i:4535634 original size:20 final size:19
Alignment explanation
Indices: 4535606--4535679 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 19
4535596 ATGTATTTTA
*
4535606 TGCACCGATGCACAAGTAAG
1 TGCATCGATGCAC-AGTAAG
* *
4535626 TGCATCGATGTACCGTTAAGG
1 TGCATCGATGCACAG-TAA-G
* *
4535647 ATGCATCGATACACTGTATAG
1 -TGCATCGATGCACAGTA-AG
4535668 TGCATCGATGCA
1 TGCATCGATGCA
4535680 TACCTTCATT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
19 1 0.02
20 25 0.58
21 4 0.09
22 13 0.30
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (19 bp):
TGCATCGATGCACAGTAAG
Found at i:4536466 original size:30 final size:30
Alignment explanation
Indices: 4536432--4536534 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
4536422 GGTTCTTCGG
* *
4536432 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
*
4536462 GACCTCTGGATAGTTACCGATGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
*
4536492 GACCTCTGGATAGTTACTGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
4536522 GACCTCTGGATAG
1 GACCTCTGGATAG
4536535 GTCCTTCGGG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:4541890 original size:21 final size:21
Alignment explanation
Indices: 4541848--4541891 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
4541838 AATTAAGAAT
* * *
4541848 CAAGGAGCTTTACTTTATAGC
1 CAAGGAGCCTTACTTCAAAGC
*
4541869 CAAGGCGCCTTACTTCAAAGC
1 CAAGGAGCCTTACTTCAAAGC
4541890 CA
1 CA
4541892 TAGCTCGTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (21 bp):
CAAGGAGCCTTACTTCAAAGC
Found at i:4542495 original size:40 final size:40
Alignment explanation
Indices: 4542449--4542529 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
4542439 AGTTACCGCC
4542449 AAAGACAAATGATCCGGGCAGCTTCATTATTCCTTGTTCA
1 AAAGACAAATGATCCGGGCAGCTTCATTATTCCTTGTTCA
4542489 AAAGACAAATGATCCGGGCAGCTTCATTATTCCTTGTTCA
1 AAAGACAAATGATCCGGGCAGCTTCATTATTCCTTGTTCA
4542529 A
1 A
4542530 TTGGAGCTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (40 bp):
AAAGACAAATGATCCGGGCAGCTTCATTATTCCTTGTTCA
Found at i:4546497 original size:22 final size:20
Alignment explanation
Indices: 4546444--4546497 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
4546434 CTCCCAAATT
*
4546444 TTTAACTTCTTTTCTCTTTC
1 TTTAACTTTTTTTCTCTTTC
*
4546464 TTTATTCATTTTTTTCTCTTTC
1 TTTA-AC-TTTTTTTCTCTTTC
4546486 ATGTTAACTTTT
1 -T-TTAACTTTT
4546498 ACTTTATCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 4 0.15
21 1 0.04
22 17 0.63
23 2 0.07
24 3 0.11
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTAACTTTTTTTCTCTTTC
Found at i:4550073 original size:25 final size:25
Alignment explanation
Indices: 4550030--4550082 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
4550020 CACGTGAGGA
*
4550030 TTATTTTCTTCTTATTTTATTAATT
1 TTATTTTCTTCTTATTTTACTAATT
* *
4550055 TTATTTATCTTTTTA-TTTACTATTT
1 TTATTT-TCTTCTTATTTTACTAATT
4550080 TTA
1 TTA
4550083 CCATTTTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (25 bp):
TTATTTTCTTCTTATTTTACTAATT
Found at i:4551719 original size:95 final size:95
Alignment explanation
Indices: 4551556--4551748 Score: 359
Period size: 95 Copynumber: 2.0 Consensus size: 95
4551546 GAATAAAGAA
* *
4551556 ATGAAATGATGAAGTTTAAAGGATCAGATGTGATAAAGGTTATATGGAAGTGTGAATGATAAGTT
1 ATGAAATAATGAAGTTTAAAGGATCAGATGTGATAAAGGTTATATGGAAGTGTAAATGATAAGTT
4551621 TGATATAGAATACGAAAAGTGTGCAAGGTG
66 TGATATAGAATACGAAAAGTGTGCAAGGTG
*
4551651 ATGAAATAATGAAGTTTAAAGGATCATATGTGATAAAGGTTATATGGAAGTGTAAATGATAAGTT
1 ATGAAATAATGAAGTTTAAAGGATCAGATGTGATAAAGGTTATATGGAAGTGTAAATGATAAGTT
4551716 TGATATAGAATACGAAAAGTGTGCAAGGTG
66 TGATATAGAATACGAAAAGTGTGCAAGGTG
4551746 ATG
1 ATG
4551749 TGAAAAGACT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.41, C:0.03, G:0.27, T:0.29
Consensus pattern (95 bp):
ATGAAATAATGAAGTTTAAAGGATCAGATGTGATAAAGGTTATATGGAAGTGTAAATGATAAGTT
TGATATAGAATACGAAAAGTGTGCAAGGTG
Found at i:4553019 original size:64 final size:64
Alignment explanation
Indices: 4552901--4553041 Score: 151
Period size: 64 Copynumber: 2.2 Consensus size: 64
4552891 CAAAGTGCAT
* * * * **
4552901 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAATGCAATTAGTGAATCGATGCATAAG-GC
1 GTGCATCGATGCACCCTTGAAACAAGAAACATCGAATGCAATTAGTGAACCGATGCACAAGTAA
* * * * *
4552964 GTGCATCGATGCACTCCCTTGATACAA-AAACATCGAATGTATTTTGTGCACCGATGCACAAGTA
1 GTGCATCGATGCA--CCCTTGAAACAAGAAACATCGAATGCAATTAGTGAACCGATGCACAAGTA
4553028 A
64 A
4553029 GTGCATCGATGCA
1 GTGCATCGATGCA
4553042 TCGTTAAGGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
63 13 0.20
64 29 0.45
65 22 0.34
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (64 bp):
GTGCATCGATGCACCCTTGAAACAAGAAACATCGAATGCAATTAGTGAACCGATGCACAAGTAA
Found at i:4553070 original size:15 final size:15
Alignment explanation
Indices: 4553036--4553078 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
4553026 TAAGTGCATC
*
4553036 GATGCATCGTTA-AG
1 GATGCATCGATACAG
*
4553050 GATGCATCGATACAT
1 GATGCATCGATACAG
4553065 GATGCATCGATACA
1 GATGCATCGATACA
4553079 CTGTATAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (15 bp):
GATGCATCGATACAG
Found at i:4553838 original size:31 final size:31
Alignment explanation
Indices: 4553800--4553864 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
4553790 AGAGTCGAGG
*
4553800 GTTTACCTATGTTCTAAGGAACATATGGACA
1 GTTTACCTAGGTTCTAAGGAACATATGGACA
** * *
4553831 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTAGGTTCTAAGGAACATATGGACA
4553862 GTT
1 GTT
4553865 ACTGAGGATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (31 bp):
GTTTACCTAGGTTCTAAGGAACATATGGACA
Found at i:4553895 original size:30 final size:30
Alignment explanation
Indices: 4553850--4553922 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
4553840 GGTTCTTCGG
* * *
4553850 GACCTATGGACAGTTACTGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
4553880 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
4553910 GACCTCTGGATAG
1 GACCTCTGGATAG
4553923 GTCCTTTGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:4556138 original size:31 final size:31
Alignment explanation
Indices: 4556103--4556261 Score: 166
Period size: 31 Copynumber: 5.2 Consensus size: 31
4556093 AGTTCAAAAG
*
4556103 TTATAAAATTATCATTAAAGTTATC-AAATAA
1 TTATAAAATTATCATTAAATTTATCAAAAT-A
* *
4556134 TTATACAATTATCATTAAATTTATCAAACTA
1 TTATAAAATTATCATTAAATTTATCAAAATA
*
4556165 TTAT-AAA-TATTCATTAAATTTATTAAAATA
1 TTATAAAATTA-TCATTAAATTTATCAAAATA
* * *
4556195 TTACAAAATTTTCATTAAATTTTATCAAAATT
1 TTATAAAATTATCATTAAA-TTTATCAAAATA
* * *
4556227 TTATAAAATAATCATT-ATTTTTTCAAAAT-
1 TTATAAAATTATCATTAAATTTATCAAAATA
4556256 TTATAA
1 TTATAA
4556262 TTATTATAAC
Statistics
Matches: 108, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
29 8 0.07
30 33 0.31
31 40 0.37
32 27 0.25
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.45
Consensus pattern (31 bp):
TTATAAAATTATCATTAAATTTATCAAAATA
Found at i:4556161 original size:61 final size:61
Alignment explanation
Indices: 4556096--4556243 Score: 151
Period size: 61 Copynumber: 2.4 Consensus size: 61
4556086 TACTAACAGT
* *
4556096 TCAAAAGTTATAAAATTATCATTAAAGTTATC-AAATAATTATACAATTATCATTAAA-TTTA
1 TCAAAA-TTATAAAATTATCATTAAAGTTATCAAAAT-ATTACAAAATTATCATTAAATTTTA
* * *
4556157 TCAAACTATTAT-AAA-TATTCATTAAATTTATTAAAATATTACAAAATTTTCATTAAATTTTA
1 TCAAA--ATTATAAAATTA-TCATTAAAGTTATCAAAATATTACAAAATTATCATTAAATTTTA
*
4556219 TCAAAATTTTATAAAATAATCATTA
1 TCAAAA--TTATAAAATTATCATTA
4556244 TTTTTTCAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
60 3 0.04
61 37 0.51
62 21 0.29
63 10 0.14
64 1 0.01
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.42
Consensus pattern (61 bp):
TCAAAATTATAAAATTATCATTAAAGTTATCAAAATATTACAAAATTATCATTAAATTTTA
Found at i:4556214 original size:21 final size:21
Alignment explanation
Indices: 4556150--4556236 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 21
4556140 AATTATCATT
* *
4556150 AAAT-TTATCAAACTATTAT-
1 AAATATTATCAAAATTTTATA
*
4556169 AAATATTCAT-TAAA-TTTATTA
1 AAATATT-ATCAAAATTTTA-TA
*
4556190 AAATATTA-CAAAATTTTCATT
1 AAATATTATCAAAATTTT-ATA
*
4556211 AAATTTTATCAAAATTTTATA
1 AAATATTATCAAAATTTTATA
4556232 AAATA
1 AAATA
4556237 ATCATTATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
19 7 0.13
20 9 0.17
21 26 0.50
22 10 0.19
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATATTATCAAAATTTTATA
Found at i:4556225 original size:11 final size:10
Alignment explanation
Indices: 4556183--4556235 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 10
4556173 ATTCATTAAA
4556183 TTTATTAAAAT
1 TTTA-TAAAAT
* *
4556194 ATTACAAAAT
1 TTTATAAAAT
*
4556204 TTTCATTAAAT
1 TTT-ATAAAAT
4556215 TTTATCAAAAT
1 TTTAT-AAAAT
4556226 TTTATAAAAT
1 TTTATAAAAT
4556236 AATCATTATT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
10 14 0.41
11 20 0.59
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTATAAAAT
Found at i:4559484 original size:21 final size:21
Alignment explanation
Indices: 4559460--4559506 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
4559450 AATATTCAAA
4559460 AAAAATAAATA-TAAAAATACT
1 AAAAATAAA-AGTAAAAATACT
* *
4559481 AAAAGTAAAAGTTAAAATTACT
1 AAAAATAAAAG-TAAAAATACT
4559503 AAAA
1 AAAA
4559507 CAATTAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 8 0.36
22 13 0.59
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (21 bp):
AAAAATAAAAGTAAAAATACT
Found at i:4559657 original size:58 final size:59
Alignment explanation
Indices: 4559589--4559753 Score: 215
Period size: 58 Copynumber: 2.8 Consensus size: 59
4559579 CAAATTATAA
* * * *
4559589 TCATTTTAAATTGGTCCTTAAACTTTTGAATATTCCAATTTCATCC-AAACTATGACTC
1 TCATTCTAAATTAGTCCTTAAACTTTTGAACATTCCAATTTCATCCTAAACTATGACCC
*
4559647 TCATTCTAAATTAGTCCTTAAACTTTTGAACATTTCAATTTCATCCCTAAACTATGACCC
1 TCATTCTAAATTAGTCCTTAAACTTTTGAACATTCCAATTTCAT-CCTAAACTATGACCC
* ** * *
4559707 TCTTTCTAAATTAGTCCCCAATCTTTTTGAACATCCCAATTTCATCC
1 TCATTCTAAATTAGTCCTTAAAC-TTTTGAACATTCCAATTTCATCC
4559754 CCAAATCCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
58 40 0.43
59 2 0.02
60 32 0.34
61 19 0.20
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (59 bp):
TCATTCTAAATTAGTCCTTAAACTTTTGAACATTCCAATTTCATCCTAAACTATGACCC
Found at i:4560684 original size:18 final size:18
Alignment explanation
Indices: 4560663--4560697 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
4560653 CGACCCGTTT
4560663 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
4560681 ACCCGACCCGTTGACCC
1 ACCCGACCCGTTGACCC
4560698 ATTGACCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.51, G:0.20, T:0.11
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:4560697 original size:13 final size:13
Alignment explanation
Indices: 4560649--4560685 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
4560639 GTCACAACCC
4560649 GACCCGACCCGTT
1 GACCCGACCCGTT
*
4560662 TACCCGACCCGTT
1 GACCCGACCCGTT
4560675 GACCCGACCCG
1 GACCCGACCCG
4560686 ACCCGTTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.16, C:0.49, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:4565778 original size:8 final size:8
Alignment explanation
Indices: 4565765--4565863 Score: 50
Period size: 8 Copynumber: 12.5 Consensus size: 8
4565755 AACCCGACCC
4565765 GACCCGTT
1 GACCCGTT
*
4565773 GACCCGACCT
1 GACCCG--TT
4565783 GACCCGTT
1 GACCCGTT
**
4565791 GACCCGACCC
1 GACCCG--TT
4565801 GACCCGTT
1 GACCCGTT
*
4565809 GA--C-TC
1 GACCCGTT
4565814 GACCCGTT
1 GACCCGTT
*
4565822 GA--C-TC
1 GACCCGTT
4565827 GACCCGTT
1 GACCCGTT
4565835 GA-CCGTT
1 GACCCGTT
4565842 GACCCGTT
1 GACCCGTT
4565850 GACCGTCGTT
1 GACC--CGTT
4565860 GACC
1 GACC
4565864 ATTGTTGACC
Statistics
Matches: 68, Mismatches: 10, Indels: 24
0.67 0.10 0.24
Matches are distributed among these distances:
5 6 0.09
6 2 0.03
7 9 0.13
8 30 0.44
10 21 0.31
ACGTcount: A:0.15, C:0.40, G:0.24, T:0.20
Consensus pattern (8 bp):
GACCCGTT
Found at i:4565778 original size:13 final size:13
Alignment explanation
Indices: 4565760--4565853 Score: 74
Period size: 13 Copynumber: 7.3 Consensus size: 13
4565750 GTCACAACCC
4565760 GACCCGACCCGTT
1 GACCCGACCCGTT
4565773 GACCCGA-CC--T
1 GACCCGACCCGTT
4565783 GACCCGTTGACCC---
1 GACCC---GACCCGTT
4565796 GACCCGACCCGTT
1 GACCCGACCCGTT
*
4565809 GACTCGACCCGTT
1 GACCCGACCCGTT
*
4565822 GACTCGACCCGTT
1 GACCCGACCCGTT
*
4565835 GACCGTTGACCCGTT
1 GACC--CGACCCGTT
4565850 GACC
1 GACC
4565854 GTCGTTGACC
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
10 11 0.16
12 2 0.03
13 42 0.61
14 2 0.03
15 12 0.17
ACGTcount: A:0.16, C:0.43, G:0.23, T:0.18
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:4565779 original size:18 final size:18
Alignment explanation
Indices: 4565756--4565819 Score: 110
Period size: 18 Copynumber: 3.6 Consensus size: 18
4565746 ACCGGTCACA
4565756 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
4565774 ACCCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
4565792 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
4565810 ACTCGACCCG
1 ACCCGACCCG
4565820 TTGACTCGAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.17, C:0.48, G:0.22, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:4565798 original size:31 final size:30
Alignment explanation
Indices: 4565760--4565853 Score: 90
Period size: 31 Copynumber: 3.1 Consensus size: 30
4565750 GTCACAACCC
4565760 GACCCGACCCGTTGACCCGACCTGACCCGTT
1 GACCCGACCCGTTGACCCGA-CTGACCCGTT
4565791 GACCCGACCC---GACCCGTTGACTCGACCCGTT
1 GACCCGACCCGTTGACCC---GACT-GACCCGTT
* *
4565822 GACTCGACCCGTTGA-CCG-TTGACCCGTT
1 GACCCGACCCGTTGACCCGACTGACCCGTT
4565850 GACC
1 GACC
4565854 GTCGTTGACC
Statistics
Matches: 53, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
28 16 0.30
29 1 0.02
30 3 0.06
31 29 0.55
33 2 0.04
34 2 0.04
ACGTcount: A:0.16, C:0.43, G:0.23, T:0.18
Consensus pattern (30 bp):
GACCCGACCCGTTGACCCGACTGACCCGTT
Found at i:4565855 original size:15 final size:13
Alignment explanation
Indices: 4565800--4565852 Score: 79
Period size: 13 Copynumber: 3.9 Consensus size: 13
4565790 TGACCCGACC
4565800 CGACCCGTTGACT
1 CGACCCGTTGACT
4565813 CGACCCGTTGACT
1 CGACCCGTTGACT
4565826 CGACCCGTTGACCGT
1 CGACCCGTTGA-C-T
*
4565841 TGACCCGTTGAC
1 CGACCCGTTGAC
4565853 CGTCGTTGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
13 24 0.65
14 2 0.05
15 11 0.30
ACGTcount: A:0.15, C:0.38, G:0.25, T:0.23
Consensus pattern (13 bp):
CGACCCGTTGACT
Found at i:4577214 original size:23 final size:22
Alignment explanation
Indices: 4577194--4577288 Score: 102
Period size: 23 Copynumber: 4.3 Consensus size: 22
4577184 GAATCGATAA
4577194 CCCCCTTGAAGGGGAACCGATT
1 CCCCCTTGAAGGGGAACCGATT
* * *
4577216 CCCCCTTTGAAGGGAAACCAACT
1 CCCCC-TTGAAGGGGAACCGATT
*
4577239 CCCCCTTTTAAGGGGAACCGATT
1 CCCCC-TTGAAGGGGAACCGATT
* * *
4577262 CCCCC-TGTAGGGGAATCGATA
1 CCCCCTTGAAGGGGAACCGATT
4577283 CCCCCT
1 CCCCCT
4577289 GGGGGTTCTG
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
21 17 0.28
22 5 0.08
23 38 0.63
ACGTcount: A:0.23, C:0.35, G:0.22, T:0.20
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCGATT
Found at i:4578844 original size:18 final size:18
Alignment explanation
Indices: 4578823--4578863 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
4578813 AGAACAGCAT
4578823 GAGGAACAAGCACAACCA
1 GAGGAACAAGCACAACCA
*
4578841 GAGGAACAAGCACGACCA
1 GAGGAACAAGCACAACCA
4578859 GAGGA
1 GAGGA
4578864 TCAAATGCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.24, G:0.29, T:0.00
Consensus pattern (18 bp):
GAGGAACAAGCACAACCA
Found at i:4581588 original size:3 final size:3
Alignment explanation
Indices: 4581569--4581606 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
4581559 ATGTAACAAG
*
4581569 TAA TAT TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA T
4581607 TATTATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:4582123 original size:93 final size:93
Alignment explanation
Indices: 4581924--4582180 Score: 362
Period size: 93 Copynumber: 2.8 Consensus size: 93
4581914 TGATAAGGTA
* *
4581924 GATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGTCTCCTACGTGAT
1 GATAACA-GATTCCTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGAT
* *
4581989 GA--AGATCTGGCCATCTTTAGGAAGGGC
65 GAGGAGGTCTGGCCATCTTTAAGAAGGGC
* *
4582016 GATAACACAGTTCCTACGTGATGAGGACGACTGGTTATC-AGGGGTGACACGACTCCTACGTGAT
1 GATAACAGA-TTCCTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGAT
4582080 GAGGAGGTCTGGCCATCTTTAAGAAGGGC
65 GAGGAGGTCTGGCCATCTTTAAGAAGGGC
* * *
4582109 GATAACATGATTCCTAC-TCGATGAGGATGGCTGGTTATCTA-GGGTGACACAACTTCTACGTGA
1 GATAACA-GATTCCTACGT-GATGAGGACGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGA
4582172 TGAGGAGGT
64 TGAGGAGGT
4582181 TTGGTCGGAG
Statistics
Matches: 148, Mismatches: 11, Indels: 11
0.87 0.06 0.06
Matches are distributed among these distances:
91 26 0.18
92 36 0.24
93 84 0.57
94 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (93 bp):
GATAACAGATTCCTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGATG
AGGAGGTCTGGCCATCTTTAAGAAGGGC
Found at i:4583060 original size:14 final size:14
Alignment explanation
Indices: 4583041--4583069 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4583031 AGTGTACTCC
4583041 TTGCCCAACAAATT
1 TTGCCCAACAAATT
4583055 TTGCCCAACAAATT
1 TTGCCCAACAAATT
4583069 T
1 T
4583070 GGTTTCCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (14 bp):
TTGCCCAACAAATT
Found at i:4585955 original size:31 final size:31
Alignment explanation
Indices: 4585917--4586058 Score: 223
Period size: 31 Copynumber: 4.6 Consensus size: 31
4585907 GGGTCGAGGG
* *
4585917 TTTACCTATGTTCTTCGGGATATATGAACTA
1 TTTACCTATGTTCTTCGGGACATATGGACTA
*
4585948 TTTACCTATGTTCTTCGGGACATATGGACTG
1 TTTACCTATGTTCTTCGGGACATATGGACTA
*
4585979 TTTACCTATGTTCTTCGGGACATATGGACTG
1 TTTACCTATGTTCTTCGGGACATATGGACTA
4586010 TTTACCTATGTTCTTCGGGACATATGGACTGA
1 TTTACCTATGTTCTTCGGGACATATGGACT-A
*
4586042 -TTACCTAGGTTCTTCGG
1 TTTACCTATGTTCTTCGG
4586059 AATCTATGGG
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (31 bp):
TTTACCTATGTTCTTCGGGACATATGGACTA
Found at i:4586713 original size:22 final size:23
Alignment explanation
Indices: 4586686--4586731 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
4586676 GAAATGTTTC
4586686 ACTGCTCAT-GGTACTGTTCACT
1 ACTGCTCATAGGTACTGTTCACT
4586708 ACTGCTCATACGGTACTGTTCACT
1 ACTGCTCATA-GGTACTGTTCACT
4586732 GTTCATACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 9 0.41
24 13 0.59
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (23 bp):
ACTGCTCATAGGTACTGTTCACT
Found at i:4591860 original size:11 final size:10
Alignment explanation
Indices: 4591828--4591861 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
4591818 AGATTTATTT
4591828 TTATTTTTTC
1 TTATTTTTTC
4591838 TTATTTTCTTC
1 TTATTTT-TTC
4591849 TCTATTTTTTC
1 T-TATTTTTTC
4591860 TT
1 TT
4591862 GTTGATGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.36
11 8 0.36
12 6 0.27
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (10 bp):
TTATTTTTTC
Found at i:4593459 original size:8 final size:8
Alignment explanation
Indices: 4593446--4593470 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4593436 CAACCGCGGT
4593446 TGAACCAG
1 TGAACCAG
4593454 TGAACCAG
1 TGAACCAG
4593462 TGAACCAG
1 TGAACCAG
4593470 T
1 T
4593471 ACTTTCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (8 bp):
TGAACCAG
Found at i:4597564 original size:26 final size:27
Alignment explanation
Indices: 4597526--4597577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
4597516 AAAATAAATT
**
4597526 AAAATATAATACATTACATTACAAAAG
1 AAAATATAATACAACACATTACAAAAG
4597553 AAAA-ATAATACAACACATTACAAAA
1 AAAATATAATACAACACATTACAAAA
4597578 AATATAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.63, C:0.13, G:0.02, T:0.21
Consensus pattern (27 bp):
AAAATATAATACAACACATTACAAAAG
Found at i:4598271 original size:30 final size:28
Alignment explanation
Indices: 4598237--4598294 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
4598227 ACTCAATAAT
*
4598237 CAAAATATAACAAACAATAACGTAAGTGAC
1 CAAAATATAACAAAC--TAACATAAGTGAC
* *
4598267 CAAAATTTAATAAACTAACATAAGTGAC
1 CAAAATATAACAAACTAACATAAGTGAC
4598295 TGAAATGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
30 13 0.52
ACGTcount: A:0.55, C:0.16, G:0.09, T:0.21
Consensus pattern (28 bp):
CAAAATATAACAAACTAACATAAGTGAC
Found at i:4598590 original size:22 final size:20
Alignment explanation
Indices: 4598540--4598590 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
4598530 TTTTTAAAAA
*
4598540 TTATCAAAATATTATTAAAT
1 TTATCAAAATATCATTAAAT
*
4598560 TTTTACAAAATTATCATTAAAT
1 TTAT-CAAAA-TATCATTAAAT
4598582 TCTATCAAA
1 T-TATCAAA
4598591 TTACTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 15 0.60
23 2 0.08
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (20 bp):
TTATCAAAATATCATTAAAT
Found at i:4608461 original size:23 final size:23
Alignment explanation
Indices: 4608435--4608488 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
4608425 AAATGCATTG
4608435 AAGTGCCACGTAGAATTGCACCA
1 AAGTGCCACGTAGAATTGCACCA
* *
4608458 AAGTGCCGCGTAGAATTGCACCG
1 AAGTGCCACGTAGAATTGCACCA
*
4608481 TAGTGCCA
1 AAGTGCCA
4608489 TATAAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.19
Consensus pattern (23 bp):
AAGTGCCACGTAGAATTGCACCA
Found at i:4609238 original size:63 final size:63
Alignment explanation
Indices: 4609130--4609251 Score: 158
Period size: 63 Copynumber: 1.9 Consensus size: 63
4609120 ATCCCTTGAC
*
4609130 GGGTGCATCGATGCACTATCTATGCATCGATACATAAATCCCATTCGATGTTTGTATTTAAGG
1 GGGTGCATCGATGCACTATCTATGCATCGATACATAAATCACATTCGATGTTTGTATTTAAGG
* * * * *
4609193 GGGTGCATCGATGCACTA-CTTGTGCATCGATTCACT-GATGACATTCGATGTTTTTATTT
1 GGGTGCATCGATGCACTATC-TATGCATCGATACA-TAAATCACATTCGATGTTTGTATTT
4609252 TAAAGTAGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
62 1 0.02
63 49 0.96
64 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (63 bp):
GGGTGCATCGATGCACTATCTATGCATCGATACATAAATCACATTCGATGTTTGTATTTAAGG
Found at i:4615422 original size:23 final size:23
Alignment explanation
Indices: 4615392--4615453 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
4615382 CTCATATAAA
4615392 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
**
4615415 TGCACCGAAGTGCCGTGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
**
4615438 TGCACCTTAGTGCCAC
1 TGCACCGAAGTGCCAC
4615454 ATAAGATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:4616214 original size:63 final size:65
Alignment explanation
Indices: 4616106--4616267 Score: 179
Period size: 63 Copynumber: 2.5 Consensus size: 65
4616096 ATCCCTTGAC
* *
4616106 GGGTGCATCGATGCACTA-TCTATGCATCGATACA-TAAATCCCATTCGATGTTTGTA-TTTAAG
1 GGGTGCATCGATGCACTACT-TGTGCATCGATACACTAAATCCCATTCGATGTTTGTATTTTAAA
4616168 G
65 G
* * ** *
4616169 GGGTGCATTGATGCACTACTTGTGCATCGATACACT-GATGGCATTCGATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTACTTGTGCATCGATACACTAAATCCCATTCGATGTTTGTATTTTAAAG
** * * *
4616233 TAGTGCATCGATGCACTTCATGTGCATCAATACAC
1 GGGTGCATCGATGCACTACTTGTGCATCGATACAC
4616268 CTTGAACAAT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
63 46 0.55
64 37 0.45
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (65 bp):
GGGTGCATCGATGCACTACTTGTGCATCGATACACTAAATCCCATTCGATGTTTGTATTTTAAAG
Found at i:4620361 original size:14 final size:14
Alignment explanation
Indices: 4620342--4620414 Score: 146
Period size: 14 Copynumber: 5.2 Consensus size: 14
4620332 TCAAGCTGTG
4620342 TTTTCAAATATCAT
1 TTTTCAAATATCAT
4620356 TTTTCAAATATCAT
1 TTTTCAAATATCAT
4620370 TTTTCAAATATCAT
1 TTTTCAAATATCAT
4620384 TTTTCAAATATCAT
1 TTTTCAAATATCAT
4620398 TTTTCAAATATCAT
1 TTTTCAAATATCAT
4620412 TTT
1 TTT
4620415 CTGATATGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 59 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTCAAATATCAT
Found at i:4625238 original size:16 final size:16
Alignment explanation
Indices: 4625217--4625248 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4625207 GTGGCGAAAG
4625217 GCGCATCCCCGGGGAC
1 GCGCATCCCCGGGGAC
4625233 GCGCATCCCCGGGGAC
1 GCGCATCCCCGGGGAC
4625249 TCGTTTTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.44, G:0.38, T:0.06
Consensus pattern (16 bp):
GCGCATCCCCGGGGAC
Found at i:4625814 original size:24 final size:23
Alignment explanation
Indices: 4625786--4625843 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
4625776 AGCGATATGG
4625786 TAATATTTTTTTTATAATTAATGT
1 TAATATTTTTTTTATAATTAAT-T
* **
4625810 TAATATTTATTGTTATGTTTAATT
1 TAATATTT-TTTTTATAATTAATT
4625834 TAA-ATTTTTT
1 TAATATTTTTT
4625844 ATGAATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 2 0.07
23 4 0.14
24 12 0.41
25 11 0.38
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (23 bp):
TAATATTTTTTTTATAATTAATT
Found at i:4625881 original size:26 final size:27
Alignment explanation
Indices: 4625828--4625887 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
4625818 ATTGTTATGT
**
4625828 TTAATTTAAATTTTTTATGAATTTATA
1 TTAATTTAAATTTTTTATGAATGCATA
*
4625855 TTAATTTTAATTTTTTAT-AATGCATA
1 TTAATTTAAATTTTTTATGAATGCATA
4625881 TT-ATTTA
1 TTAATTTA
4625888 GGATACTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.14
26 8 0.28
27 17 0.59
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (27 bp):
TTAATTTAAATTTTTTATGAATGCATA
Found at i:4627494 original size:42 final size:42
Alignment explanation
Indices: 4627395--4627499 Score: 102
Period size: 42 Copynumber: 2.5 Consensus size: 42
4627385 ATGCCACAGT
* * * * *
4627395 GGTACATGCCCATCCCTCCACTTCAGATGCCATCTCCTCAGG
1 GGTACATGCCAAGCCCACCAGTTCAGATGCCATCTCCGCAGG
* * *
4627437 GGTATATGCCAAGCCCACCAGTTCATATGTCATCTCCGCAGG
1 GGTACATGCCAAGCCCACCAGTTCAGATGCCATCTCCGCAGG
* * * *
4627479 GTTACATTCCTAGCCCGCCAG
1 GGTACATGCCAAGCCCACCAG
4627500 GTTACATGCC
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (42 bp):
GGTACATGCCAAGCCCACCAGTTCAGATGCCATCTCCGCAGG
Found at i:4627523 original size:21 final size:21
Alignment explanation
Indices: 4627472--4627523 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
4627462 TATGTCATCT
*
4627472 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
4627493 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
4627514 CCGCAGGGTT
1 CCGCAGGGTT
4627524 TTATACCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:4628072 original size:34 final size:34
Alignment explanation
Indices: 4628034--4628140 Score: 160
Period size: 34 Copynumber: 3.1 Consensus size: 34
4628024 TAAAAAGTTT
*
4628034 TTAAAATAAAAATTATAGTATTCAAAATTTAAAA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
* * *
4628068 TTAAAATACAAATAATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
* *
4628102 TTAAAATATAAATTATAGTATTCGAAATTTAATA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
4628136 TTAAA
1 TTAAA
4628141 TTCAACTTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (34 bp):
TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
Found at i:4628863 original size:127 final size:125
Alignment explanation
Indices: 4628559--4628938 Score: 598
Period size: 127 Copynumber: 3.0 Consensus size: 125
4628549 GTGCTTTAAA
* * *
4628559 GTCCCCTAAGAAATAGTAGGTATTGACATGAATAGTTTCCGGGGGACATAAGTGACATAATAAGG
1 GTCCCCTAAG-AATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
* * *
4628624 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCGGGAACGCGTCTTCACG
65 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCCGGAACGCGCCTTCACG
* * *
4628685 GTTCCCTAAGGAATAATAGGTATTGACATGAATAGTTCTCGAGGGACATAAGTGACATAATAGGG
1 GTCCCCTAA-GAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
*
4628750 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCCGAGAACGCGCCTTCATG
65 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCCG-GAACGCGCCTTCACG
4628812 GTCCCCTAATGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAA-GAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
* * *
4628877 CAATGATAACATATTCTCTGATAAAATAACGGAAGGCGCGCCCCCCGGAATGCGCCTTCACG
65 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGC-CCCCCCGGAACGCGCCTTCACG
4628939 TGAATAGTAC
Statistics
Matches: 233, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
126 101 0.43
127 125 0.54
128 7 0.03
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (125 bp):
GTCCCCTAAGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGGC
AATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCCGGAACGCGCCTTCACG
Found at i:4631804 original size:20 final size:20
Alignment explanation
Indices: 4631779--4631834 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
4631769 ATTTAATTCA
4631779 TGGTGCATCGATGCATGGAT
1 TGGTGCATCGATGCATGGAT
4631799 TGGTGCATCGATGCATGGAT
1 TGGTGCATCGATGCATGGAT
*
4631819 TGGTGCATCGGTGCAT
1 TGGTGCATCGATGCAT
4631835 CACTCTGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (20 bp):
TGGTGCATCGATGCATGGAT
Found at i:4631805 original size:65 final size:63
Alignment explanation
Indices: 4631671--4631815 Score: 170
Period size: 65 Copynumber: 2.2 Consensus size: 63
4631661 AAATAGCAGA
* *
4631671 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTAT
1 GTGCATCGATGCATGAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGGTAT
**
4631736 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGG-A
1 GTGCATCGATGCATGAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGGTA
4631798 TT
63 -T
4631800 GGTGCATCGATGCATG
1 -GTGCATCGATGCATG
4631816 GATTGGTGCA
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
62 3 0.04
63 4 0.06
64 21 0.30
65 43 0.61
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (63 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTAT
Found at i:4632315 original size:2 final size:2
Alignment explanation
Indices: 4632308--4632362 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
4632298 AATTGATTAA
4632308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4632350 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
4632363 GCTTAAGCTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4638913 original size:241 final size:239
Alignment explanation
Indices: 4638554--4639036 Score: 864
Period size: 246 Copynumber: 2.0 Consensus size: 239
4638544 TTGAATTTTC
4638554 TTCCTCGGTAGGTCTCGTCATTTTTCTGAACTGTTGGCAAACAATGACATGTCCGTCATCGTCAT
1 TTCCTCGGTAGGTCTCGTCATTTTTCTGAACTGTTGGCAAACAATGACATGTCCGTCATCGTCAT
4638619 CTTCATCCGAATCACTCTCATTTTTGTGGATTTGAGAGCAACTCCAATG-TTT-TTCTTCTCCTT
66 CTTCATCCGAATCACTCTCATTTTTGTGGATTTGAGAGCAACTCCAATGTTTTCTTCTTCTCCTT
4638682 CTCTTTTGGTGCCTCTTCAA-TTATCGAGGTCCACCTCATCTTCAAGCATCATTTCATTAGTGAG
131 CTCTTTTGGTGCCTCTTCAACTTATCGAGGTCCACCTCATCTTCAAGCATCATTTCATTAGTGAG
4638746 GAGTGAACCGATTAGCTCTTCAAGAGTTAAAGACGGTAGATCCT
196 GAGTGAACCGATTAGCTCTTCAAGAGTTAAAGACGGTAGATCCT
*
4638790 TTCCTCGGTAAGGTCTCGTCATTTTTCTGAACTGTTTGGCAAACAATGACATTTCCTCGTCATCG
1 TTCCTCGGT-AGGTCTCGTCATTTTTCTGAACTG-TTGGCAAACAATGACATGT-C-CGTCATCG
4638855 TCATCTTCATCCGAATCACTCTCATCTTTTGTGGATTTGAGAGCAACTCCAATGTTTTTCTTCTT
62 TCATCTTCATCCGAATCACTCTCAT-TTTTGTGGATTTGAGAGCAACTCCAATG-TTTTCTTCTT
4638920 CTCCTTCTCTTTTGGTGCCTCTTCAATCTTATCGAGGTCCACCTCATCTTCAAGCATCATTTCAT
125 CTCCTTCTCTTTTGGTGCCTCTTCAA-CTTATCGAGGTCCACCTCATCTTCAAGCATCATTTCAT
*
4638985 TAGTGAGGAGTGAACCGATTAGCTCTTCAAGAGTTAAAGACGTTAGATCCT
189 TAGTGAGGAGTGAACCGATTAGCTCTTCAAGAGTTAAAGACGGTAGATCCT
4639036 T
1 T
4639037 AGACTCGATG
Statistics
Matches: 235, Mismatches: 2, Indels: 10
0.95 0.01 0.04
Matches are distributed among these distances:
236 9 0.04
237 24 0.10
238 18 0.08
239 1 0.00
240 33 0.14
241 28 0.12
243 3 0.01
244 31 0.13
246 88 0.37
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (239 bp):
TTCCTCGGTAGGTCTCGTCATTTTTCTGAACTGTTGGCAAACAATGACATGTCCGTCATCGTCAT
CTTCATCCGAATCACTCTCATTTTTGTGGATTTGAGAGCAACTCCAATGTTTTCTTCTTCTCCTT
CTCTTTTGGTGCCTCTTCAACTTATCGAGGTCCACCTCATCTTCAAGCATCATTTCATTAGTGAG
GAGTGAACCGATTAGCTCTTCAAGAGTTAAAGACGGTAGATCCT
Found at i:4640414 original size:18 final size:17
Alignment explanation
Indices: 4640360--4640408 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
4640350 TTAGACCCTT
* *
4640360 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
4640378 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
4640396 AGTGCATTCGATG
1 AGTGCA-TCGATG
4640409 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:4640517 original size:64 final size:63
Alignment explanation
Indices: 4640356--4640518 Score: 172
Period size: 64 Copynumber: 2.5 Consensus size: 63
4640346 ACCGTTAGAC
* *
4640356 CCTTAGTGCATCGGTGCACT-AAGAGTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAG
1 CCTTAGTGCATCGATGCA-TGAA-A-TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAG
4640420 T
63 T
* ***
4640421 -CATAGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A
1 CCTTAGTGCATCGATGCAT-G-AAATGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATA
4640484 -T
62 GT
4640485 CCTTAGTGCATCGATGCATGAAATGCATTCGATG
1 CCTTAGTGCATCGATGCATGAAATGCA-TCGATG
4640519 TTCAATTTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 15
0.76 0.09 0.14
Matches are distributed among these distances:
63 5 0.06
64 50 0.62
65 23 0.28
66 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (63 bp):
CCTTAGTGCATCGATGCATGAAATGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGT
Found at i:4642643 original size:31 final size:31
Alignment explanation
Indices: 4642599--4642666 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
4642589 TTACAAATTA
**
4642599 GTCACTAGTATTATCGATTTGTAACATATTG
1 GTCACTAAAATTATCGATTTGTAACATATTG
* *
4642630 GTCACTAAAATTATCGATTTGTAATATATTT
1 GTCACTAAAATTATCGATTTGTAACATATTG
4642661 GTCACT
1 GTCACT
4642667 CGACATTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (31 bp):
GTCACTAAAATTATCGATTTGTAACATATTG
Found at i:4643543 original size:21 final size:21
Alignment explanation
Indices: 4643492--4643544 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
4643482 ATTATGACTA
4643492 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
4643513 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
4643534 TCGCAATGCGA
1 TCGCAATGCGA
4643545 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:4643577 original size:21 final size:21
Alignment explanation
Indices: 4643534--4643648 Score: 160
Period size: 21 Copynumber: 5.5 Consensus size: 21
4643524 TTTTCCCAAT
** *
4643534 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
4643554 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
4643575 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
4643596 TCGCAATGTGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
* *
4643617 TCGCAATACGAATTTGAAAAA
1 TCGCAATGCGAATTTGGAAAA
*
4643638 TCGCAACGCGA
1 TCGCAATGCGA
4643649 CTTAATTTCG
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
20 12 0.14
21 73 0.86
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:4643661 original size:18 final size:18
Alignment explanation
Indices: 4643638--4643681 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4643628 ATTTGAAAAA
*
4643638 TCGCAACGCGACTTAATT
1 TCGCAACGCGACTGAATT
* *
4643656 TCGCAACGCTACTGACTT
1 TCGCAACGCGACTGAATT
4643674 TCGCAACG
1 TCGCAACG
4643682 AGATAATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (18 bp):
TCGCAACGCGACTGAATT
Found at i:4644134 original size:14 final size:14
Alignment explanation
Indices: 4644115--4644153 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
4644105 ACGCGAAATG
4644115 AAATCGCAACGACA
1 AAATCGCAACGACA
4644129 AAATCGCAACGACA
1 AAATCGCAACGACA
4644143 AAATCGCAACG
1 AAATCGCAACG
4644154 CGATTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.28, G:0.15, T:0.08
Consensus pattern (14 bp):
AAATCGCAACGACA
Found at i:4644189 original size:20 final size:20
Alignment explanation
Indices: 4644161--4644199 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4644151 ACGCGATTTT
*
4644161 ATTCTCGTTGCGATAGTCAA
1 ATTCGCGTTGCGATAGTCAA
*
4644181 ATTCGCGTTGCGATTGTCA
1 ATTCGCGTTGCGATAGTCA
4644200 TTTTCGTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (20 bp):
ATTCGCGTTGCGATAGTCAA
Found at i:4644205 original size:20 final size:20
Alignment explanation
Indices: 4644166--4644224 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
4644156 ATTTTATTCT
* **
4644166 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
4644186 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* * *
4644206 TGTTGCAATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
4644225 AGCAACTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:4645549 original size:18 final size:18
Alignment explanation
Indices: 4645528--4645575 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
4645518 TCCACTTCGG
4645528 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
4645546 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
4645564 GAGTCATCACCT
1 GAGCCATCACCT
4645576 GATCGACCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.27, C:0.44, G:0.12, T:0.17
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:4646132 original size:20 final size:20
Alignment explanation
Indices: 4646107--4646152 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
4646097 TAGTTTACTT
4646107 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
** * *
4646127 TCGCAATGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
4646147 TCGCAA
1 TCGCAA
4646153 TGTGAAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:4646168 original size:19 final size:19
Alignment explanation
Indices: 4646126--4646242 Score: 83
Period size: 19 Copynumber: 6.6 Consensus size: 19
4646116 GAAAATGACT
***
4646126 ATCGCAATGCGGAAATGGCT
1 ATCGCAATGC-GAAATGAAA
*
4646146 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4646165 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
4646179 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4646198 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
4646212 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4646231 ATTGCAATGCGA
1 ATCGCAATGCGA
4646243 TTTGTGTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 21
0.70 0.10 0.19
Matches are distributed among these distances:
14 20 0.26
15 2 0.03
16 4 0.05
17 3 0.04
18 2 0.03
19 36 0.47
20 9 0.12
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4646181 original size:14 final size:14
Alignment explanation
Indices: 4646162--4646220 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
4646152 ATGTGAAATG
4646162 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
4646176 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
4646195 AAAATCGCAACGAC
1 AAAATCGCAACGAC
4646209 AAAATCGCAACG
1 AAAATCGCAACG
4646221 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4646193 original size:33 final size:33
Alignment explanation
Indices: 4646146--4646237 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
4646136 GGAAATGGCT
*
4646146 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
4646179 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
4646212 ATCGCAACGCGAAATGAAAATTGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
4646238 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.48, C:0.20, G:0.18, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:4646260 original size:19 final size:19
Alignment explanation
Indices: 4646249--4646314 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
4646239 GCGATTTGTG
*
4646249 TTTCGCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
4646268 TTTCGCATTGCGA-TTT--
1 TTTCGCATTGCGATTTTCA
*
4646284 TGTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
4646301 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
4646315 AGCCATTTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 6 0.15
15 3 0.08
16 4 0.10
17 4 0.10
18 3 0.08
19 19 0.49
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.47
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:4646333 original size:20 final size:20
Alignment explanation
Indices: 4646299--4646373 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
4646289 TTGCGATTTT
*
4646299 CATTT-CGCATTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
4646318 CATTTCCGCGTTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
* *
4646338 CATTTCCGAGTTGCGATAGT
1 CATTTCCGCGTTGCGATAGC
*
4646358 CATTTTCGCGTTGCGA
1 CATTTCCGCGTTGCGA
4646374 AAGTAAGTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 5 0.10
20 45 0.90
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.33
Consensus pattern (20 bp):
CATTTCCGCGTTGCGATAGC
Found at i:4646384 original size:20 final size:20
Alignment explanation
Indices: 4646347--4646399 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
4646337 CCATTTCCGA
* * *
4646347 GTTGCGATAGTCATTTTCGC
1 GTTGCGAAAGTAAGTTTCGC
*
4646367 GTTGCGAAAGTAAGTTTCGT
1 GTTGCGAAAGTAAGTTTCGC
4646387 GTTGCGAAAGTAA
1 GTTGCGAAAGTAA
4646400 ACTATTCTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (20 bp):
GTTGCGAAAGTAAGTTTCGC
Found at i:4646391 original size:40 final size:40
Alignment explanation
Indices: 4646308--4646393 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
4646298 TCATTTCGCA
* *
4646308 TTGCGATAGCCATTTCCGCGTTGCGATAGCCATTTCCGAG
1 TTGCGATAGCCATTTCCGCGTTGCGAAAGCAATTTCCGAG
* * * *
4646348 TTGCGATAGTCATTTTCGCGTTGCGAAAGTAAGTTT-CGTG
1 TTGCGATAGCCATTTCCGCGTTGCGAAAGCAA-TTTCCGAG
4646388 TTGCGA
1 TTGCGA
4646394 AAGTAAACTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 36 0.92
41 3 0.08
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.34
Consensus pattern (40 bp):
TTGCGATAGCCATTTCCGCGTTGCGAAAGCAATTTCCGAG
Found at i:4646793 original size:21 final size:20
Alignment explanation
Indices: 4646741--4646796 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
4646731 GACTCACCTG
*
4646741 TCATCCCTCAAGAGTCCCCT
1 TCATCCCTCAAGAGGCCCCT
* **
4646761 CCAATCGTTCAAGAGGCCCCT
1 TC-ATCCCTCAAGAGGCCCCT
4646782 ATCATCCCTCAAGAG
1 -TCATCCCTCAAGAG
4646797 TCCCGCCCCC
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.25, C:0.39, G:0.14, T:0.21
Consensus pattern (20 bp):
TCATCCCTCAAGAGGCCCCT
Found at i:4646830 original size:43 final size:42
Alignment explanation
Indices: 4646738--4646830 Score: 132
Period size: 43 Copynumber: 2.2 Consensus size: 42
4646728 CCCGACTCAC
* * *
4646738 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCCCCAACCGTTCAAGAGGCCA
* *
4646780 CTATCATCCCTCAAGAGTCCCGCCCCCACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCC-CCCCAACCGTTCAAGAGGCCA
4646823 CTGTCATC
1 CTGTCATC
4646831 GTTGAAGAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.45
43 24 0.55
ACGTcount: A:0.22, C:0.42, G:0.16, T:0.20
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCCCCAACCGTTCAAGAGGCCA
Found at i:4647233 original size:16 final size:16
Alignment explanation
Indices: 4647222--4647255 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
4647212 ATTAATTTTT
4647222 TTAAAAATTAATGTAA
1 TTAAAAATTAATGTAA
4647238 TTAAAAATTAATGTAA
1 TTAAAAATTAATGTAA
4647254 TT
1 TT
4647256 CACTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
TTAAAAATTAATGTAA
Found at i:4648289 original size:14 final size:14
Alignment explanation
Indices: 4648255--4648293 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
4648245 TTGATTGTTT
4648255 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
4648269 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
4648283 TGTTGATTTGT
1 AATTGATTTGT
4648294 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:4648790 original size:20 final size:20
Alignment explanation
Indices: 4648774--4648870 Score: 167
Period size: 20 Copynumber: 4.8 Consensus size: 20
4648764 ATTGCGATTT
*
4648774 TCAGAATCTCGTTGCGAAAG
1 TCAGAATCGCGTTGCGAAAG
4648794 TCAGAATCGCGTTGCGAAAG
1 TCAGAATCGCGTTGCGAAAG
4648814 TCAGAATCGCGTTGCGAAAG
1 TCAGAATCGCGTTGCGAAAG
*
4648834 TCAGTATCGCGTTGCGAAAG
1 TCAGAATCGCGTTGCGAAAG
*
4648854 TCAGTATCGCGTTGCGA
1 TCAGAATCGCGTTGCGA
4648871 TTTTGTATTA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 75 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (20 bp):
TCAGAATCGCGTTGCGAAAG
Found at i:4648912 original size:20 final size:20
Alignment explanation
Indices: 4648783--4648911 Score: 161
Period size: 20 Copynumber: 6.4 Consensus size: 20
4648773 TTCAGAATCT
*
4648783 CGTTGCGAAAGTCAGAATCG
1 CGTTGCGAAAGTCAGTATCG
*
4648803 CGTTGCGAAAGTCAGAATCG
1 CGTTGCGAAAGTCAGTATCG
4648823 CGTTGCGAAAGTCAGTATCG
1 CGTTGCGAAAGTCAGTATCG
4648843 CGTTGCGAAAGTCAGTATCG
1 CGTTGCGAAAGTCAGTATCG
** *
4648863 CGTTGCGATTTTGT-ATTATCG
1 CGTTGCGA--AAGTCAGTATCG
* *
4648884 CGTTACGATAGTCAGTATCG
1 CGTTGCGAAAGTCAGTATCG
*
4648904 CATTGCGA
1 CGTTGCGA
4648912 TTTTCCAAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
19 3 0.03
20 79 0.81
21 13 0.13
22 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
CGTTGCGAAAGTCAGTATCG
Found at i:4648945 original size:20 final size:21
Alignment explanation
Indices: 4648901--4648952 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
4648891 ATAGTCAGTA
*
4648901 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
4648922 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
4648942 TCGCATTGCGA
1 TCGCATTGCGA
4648953 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:4648991 original size:20 final size:20
Alignment explanation
Indices: 4648966--4649055 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
4648956 GGGAAAATCT
*
4648966 CAACGCGATACTTACTTTCG
1 CAACGCGATACTGACTTTCG
4648986 CAACGCGATACTGACTTTCG
1 CAACGCGATACTGACTTTCG
*
4649006 CAACGCGATTCTGACTTTCG
1 CAACGCGATACTGACTTTCG
* *
4649026 CAACGCGATTCTGACTATCG
1 CAACGCGATACTGACTTTCG
*
4649046 CAACGAGATA
1 CAACGCGATA
4649056 ATACAGAATC
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (20 bp):
CAACGCGATACTGACTTTCG
Found at i:4649849 original size:24 final size:24
Alignment explanation
Indices: 4649791--4649837 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
4649781 AGTCAGTATT
* *
4649791 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATATTGGTCAATACC
4649815 CGAACTTTGATATTGGTCAATAC
1 CGAACTTTGATATTGGTCAATAC
4649838 TCGGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAACTTTGATATTGGTCAATACC
Found at i:4650042 original size:12 final size:12
Alignment explanation
Indices: 4650025--4650059 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
4650015 TATAATCCTG
4650025 AAGAAGAAAAAT
1 AAGAAGAAAAAT
4650037 AAGAAGAAAAAT
1 AAGAAGAAAAAT
*
4650049 AAGAATAAAAA
1 AAGAAGAAAAA
4650060 GTCCCCGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (12 bp):
AAGAAGAAAAAT
Found at i:4652410 original size:19 final size:20
Alignment explanation
Indices: 4652368--4652413 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
4652358 CTTAATGTCT
* **
4652368 ATCGCAATGCGGAAATTACT
1 ATCGCAATGCGGAAATGAAA
4652388 ATCGCAATGC-GAAATGAAA
1 ATCGCAATGCGGAAATGAAA
4652407 ATCGCAA
1 ATCGCAA
4652414 CGAGAGAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAATGCGGAAATGAAA
Found at i:4652425 original size:14 final size:14
Alignment explanation
Indices: 4652406--4652437 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
4652396 GCGAAATGAA
4652406 AATCGCAACGAGAG
1 AATCGCAACGAGAG
4652420 AATCGCAACGAGAG
1 AATCGCAACGAGAG
4652434 AATC
1 AATC
4652438 ACAATGCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:4652457 original size:33 final size:33
Alignment explanation
Indices: 4652420--4652495 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
4652410 GCAACGAGAG
*
4652420 AATCGCAACGAGAGAATCACAATGCGAAATGAA
1 AATCGCAACGAGAGAATCACAAAGCGAAATGAA
* **
4652453 AATCGCAACGAGGGAATCGTAAAGCGAAATGAA
1 AATCGCAACGAGAGAATCACAAAGCGAAATGAA
4652486 AATCGCAACG
1 AATCGCAACG
4652496 CGAATTTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (33 bp):
AATCGCAACGAGAGAATCACAAAGCGAAATGAA
Found at i:4652547 original size:33 final size:33
Alignment explanation
Indices: 4652505--4652584 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
4652495 GCGAATTTAG
* * *
4652505 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCAATTTTCA
4652538 TTTCGCGTTGCGATTCTCTCGTTGCAATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCAATTTTCA
*
4652571 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
4652585 AGTCATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.46
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCAATTTTCA
Found at i:4652548 original size:19 final size:19
Alignment explanation
Indices: 4652524--4652584 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
4652514 GCGATTTTGT
4652524 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
4652543 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
4652557 CGTTGCAATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
4652576 CATTGCGAT
1 CGTTGCGAT
4652585 AGTCATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
14 9 0.28
16 3 0.09
17 3 0.09
19 17 0.53
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:4652710 original size:14 final size:14
Alignment explanation
Indices: 4652691--4652727 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4652681 CATCAATTAA
4652691 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
4652705 ACAAATCACCTTTT
1 ACAAATCAACTTTT
4652719 ACAAATCAA
1 ACAAATCAA
4652728 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:4654143 original size:21 final size:21
Alignment explanation
Indices: 4654077--4654143 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
4654067 GTGAATCGGG
*
4654077 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
4654097 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
4654119 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
4654140 CTCT
1 CTCT
4654144 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:4654591 original size:91 final size:90
Alignment explanation
Indices: 4654417--4654601 Score: 264
Period size: 91 Copynumber: 2.0 Consensus size: 90
4654407 ATTTCAAACT
* *
4654417 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAATGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAATGTT--A-AATAAACAGTTTAGA
4654482 AGAATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
* * *
4654510 TTCAACCAAAAGACAAAACAAAAAGATAAATACTAACTTCATAGTGTT-AATAAACAGTTTAGAA
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAATGTTAAATAAACAGTTTAGAA
*
4654574 GTATTGGCAGCAACCGAATAAATTTAC
64 GAATTGGCAGCAACCGAATAAATTTAC
4654601 T
1 T
4654602 AAGCAATCTA
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
91 41 0.49
93 19 0.23
95 24 0.29
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.23
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAATGTTAAATAAACAGTTTAGAAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:4656320 original size:20 final size:19
Alignment explanation
Indices: 4656293--4656447 Score: 106
Period size: 19 Copynumber: 8.8 Consensus size: 19
4656283 TCTTTTGGTT
4656293 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
4656312 GATAATGAAAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
4656333 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
4656352 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
**
4656366 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
4656385 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
4656399 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
4656418 G--A-G--AATCACAACGC
1 GAAATGAAAATCGCAACGA
4656432 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
4656448 TGCGATTTTG
Statistics
Matches: 105, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
14 30 0.29
16 6 0.06
17 6 0.06
19 31 0.30
20 30 0.29
21 2 0.02
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:4656361 original size:14 final size:14
Alignment explanation
Indices: 4656342--4656430 Score: 61
Period size: 14 Copynumber: 5.6 Consensus size: 14
4656332 GGAAATGACT
4656342 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
4656356 ATCGCAACGCGAAATGA
1 ATCGCAA--CGAGA-GA
4656373 CTATCGCAACGAGAGA
1 --ATCGCAACGAGAGA
*
4656389 ATCGCAACGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
4656408 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
4656422 ATCACAACG
1 ATCGCAACG
4656431 CGAAATGAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
14 25 0.42
15 1 0.02
16 8 0.13
17 8 0.13
18 1 0.02
19 17 0.28
ACGTcount: A:0.43, C:0.24, G:0.24, T:0.10
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:4656375 original size:33 final size:33
Alignment explanation
Indices: 4656293--4656447 Score: 202
Period size: 33 Copynumber: 4.5 Consensus size: 33
4656283 TCTTTTGGTT
4656293 GAAATGAAAATCGCAACGAGATAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGAG---A-G--AATCGCAACGC
**
4656332 GGAAATGACTATCGCAACGAGAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
4656366 GAAATGACTATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
4656399 GAAATGAAAATCGCAACGAGAGAATCACAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
4656432 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
4656448 TGCGATTTTG
Statistics
Matches: 110, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
33 79 0.72
34 11 0.10
36 1 0.01
37 1 0.01
40 18 0.16
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.12
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:4656481 original size:19 final size:19
Alignment explanation
Indices: 4656448--4656524 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 19
4656438 AAAATCGCAA
**
4656448 TGCGATTTTGGTTTCGAAT
1 TGCGATTTTCATTTCGAAT
**
4656467 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCGAAT
* **
4656486 TGCGATAGTT-ATTTCCGCGT
1 TGCGAT-TTTCATTT-CGAAT
4656506 TGCGATTTTCATTCTCGAA
1 TGCGATTTTCATT-TCGAA
4656525 ACTATTCTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
19 27 0.59
20 18 0.39
21 1 0.02
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (19 bp):
TGCGATTTTCATTTCGAAT
Found at i:4657090 original size:20 final size:20
Alignment explanation
Indices: 4657045--4657156 Score: 127
Period size: 20 Copynumber: 5.5 Consensus size: 20
4657035 GCTATGTAAA
* *
4657045 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-TTACGTAT
*
4657065 TTGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
4657085 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-AT
* *
4657106 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATTTACGTAT
*
4657126 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
4657146 TCGCATTGCGA
1 TCGCATTGCGA
4657157 ATTATGAAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
19 3 0.04
20 56 0.73
21 18 0.23
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:4657169 original size:41 final size:41
Alignment explanation
Indices: 4657037--4657292 Score: 132
Period size: 41 Copynumber: 6.3 Consensus size: 41
4657027 CGAATGGCGC
* * * * *
4657037 TATGTAAATCGCATTGCGATAGTAAG-ATTTGCATTGCGATT
1 TATGAAAATCGCATTGCGAT-TTACGTATTCGCATTGCGAAT
* * * * * *
4657078 TACG-TATTCGCATTGCGATTTTCCTAATTCGCATTGCGATT
1 TATGAAAATCGCATTGCGATTTACGT-ATTCGCATTGCGAAT
* *
4657119 TACT--TAATCGCGTTGCGATTTACGTATTCGCATTGCGAAT
1 TA-TGAAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
** * * * * *
4657159 TATGAAAATCGCAACGCGA-ATACATAAATCGCAATACGAAT
1 TATGAAAATCGCATTGCGATTTACGT-ATTCGCATTGCGAAT
* * *
4657200 TAGGAAAATTGCATTGCGATAGT-CAGTA-TCGCATTGCG-AT
1 TATGAAAATCGCATTGCGAT-TTAC-GTATTCGCATTGCGAAT
* * * *
4657240 TTTCCAAATTCGCATTGCGATTTACTTATTCGCATTGCGAAT
1 TAT-GAAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
**
4657282 TGGGAAAATCG
1 TATGAAAATCG
4657293 TAACGCGAAA
Statistics
Matches: 160, Mismatches: 42, Indels: 26
0.70 0.18 0.11
Matches are distributed among these distances:
39 2 0.01
40 39 0.24
41 112 0.70
42 5 0.03
43 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (41 bp):
TATGAAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
Done.