Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 39
Found at i:6762014 original size:65 final size:63
Alignment explanation
Indices: 6761937--6762116 Score: 202
Period size: 65 Copynumber: 2.8 Consensus size: 63
6761927 AATTAAATTG
* *
6761937 AACATCGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCATTTGATGCATCGATGCACAT-CCATGCACCGATGCACTCAGGATATTT-TG-
6762001 A
63 A
* * * * *
6762002 AACATCAAATGCATTTGATGCATCGATACACCATCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCA-CATCCATGCACCGATGCACTCAGGATATTTTGA
* * *
6762066 AACATCGAATGCACTTGATGAATCGATGCAC-TCTTAGTGCACCGATGCACT
1 AACATCGAATGCATTTGATGCATCGATGCACATC-CA-TGCACCGATGCACT
6762117 AAGGGTCCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 40 0.41
65 48 0.49
66 6 0.06
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (63 bp):
AACATCGAATGCATTTGATGCATCGATGCACATCCATGCACCGATGCACTCAGGATATTTTGA
Found at i:6769491 original size:21 final size:21
Alignment explanation
Indices: 6769449--6769492 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
6769439 ACTCCGGGAG
* *
6769449 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
6769470 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
6769491 CT
1 CT
6769493 CCTCCAGCTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:6770042 original size:2 final size:2
Alignment explanation
Indices: 6770035--6770082 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
6770025 GCAGCTTAAG
6770035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6770077 AT AT AT
1 AT AT AT
6770083 TTAATTAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6770652 original size:46 final size:45
Alignment explanation
Indices: 6770577--6770663 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 45
6770567 TGCACATACC
6770577 ATGCACCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTTG
1 ATGCACCGATGCACTGAGGATTTTATG-AAACATCGAATGCATTTG
* *
6770623 ATGCATCGATGCACT-ATGGCTATTT-TGAAACATCGAATGCA
1 ATGCACCGATGCACTGA-GGAT-TTTATGAAACATCGAATGCA
6770664 CCGATGCACT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
45 15 0.41
46 19 0.51
47 3 0.08
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
ATGCACCGATGCACTGAGGATTTTATGAAACATCGAATGCATTTG
Found at i:6772139 original size:20 final size:20
Alignment explanation
Indices: 6772103--6772273 Score: 102
Period size: 20 Copynumber: 8.6 Consensus size: 20
6772093 ACTAAAACCT
*
6772103 GTTGCGAAATT-AAATTCGC
1 GTTGCGAATTTGAAATTCGC
*
6772122 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
* **
6772141 GTTGCGAATTTTACTTTCGC
1 GTTGCGAATTTGAAATTCGC
*
6772161 GTTGAGAATTTG-AATATCGC
1 GTTGCGAATTTGAAAT-TCGC
*** *
6772181 AACGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
**
6772202 AATGCG-ATTT-ACATATTCGC
1 GTTGCGAATTTGA-A-ATTCGC
* * *
6772222 GTTGCGAAATTGGAAACT-GG
1 GTTGCG-AATTTGAAATTCGC
* *
6772242 GTTGCGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
6772262 GTTGCGAATTTG
1 GTTGCGAATTTG
6772274 TTGGTCATTT
Statistics
Matches: 113, Mismatches: 28, Indels: 21
0.70 0.17 0.13
Matches are distributed among these distances:
18 1 0.01
19 34 0.30
20 59 0.52
21 12 0.11
22 6 0.05
23 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:6772149 original size:19 final size:19
Alignment explanation
Indices: 6772103--6772151 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
6772093 ACTAAAACCT
* *
6772103 GTTGCGAAATTAAATTCGC
1 GTTGCGAATTTAAATTCGA
6772122 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTT-AAATTCGA
6772141 GTTGCGAATTT
1 GTTGCGAATTT
6772152 TACTTTCGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 21 0.78
20 6 0.22
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (19 bp):
GTTGCGAATTTAAATTCGA
Found at i:6772202 original size:21 final size:20
Alignment explanation
Indices: 6772166--6772208 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
6772156 TTCGCGTTGA
*
6772166 GAATTTGAATATCGCAACGC
1 GAATTTGAAAATCGCAACGC
*
6772186 GAATTTGGAAAATCGCAATGC
1 GAATTT-GAAAATCGCAACGC
6772207 GA
1 GA
6772209 TTTACATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (20 bp):
GAATTTGAAAATCGCAACGC
Found at i:6772361 original size:21 final size:21
Alignment explanation
Indices: 6772336--6772378 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
6772326 GCATTTTTGG
6772336 TCACTGAGGTTATTTTCTCTT
1 TCACTGAGGTTATTTTCTCTT
6772357 TCACTGAGGTTATTTTCTCTT
1 TCACTGAGGTTATTTTCTCTT
6772378 T
1 T
6772379 TGATAATAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.53
Consensus pattern (21 bp):
TCACTGAGGTTATTTTCTCTT
Found at i:6772622 original size:20 final size:21
Alignment explanation
Indices: 6772559--6772612 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
6772549 AATATGTAAA
6772559 TCGCGTTGTGATTTTCCAAAT
1 TCGCGTTGTGATTTTCCAAAT
6772580 TCGCGTTGTGATTTTCCAAAT
1 TCGCGTTGTGATTTTCCAAAT
6772601 TCGCGTTGTGAT
1 TCGCGTTGTGAT
6772613 AGTCAAATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.43
Consensus pattern (21 bp):
TCGCGTTGTGATTTTCCAAAT
Found at i:6772679 original size:19 final size:19
Alignment explanation
Indices: 6772655--6772724 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
6772645 AACGCGGAAG
6772655 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACTGAATT
*
6772674 TCAAATTTGCAACTGAATT
1 TCAAATTCGCAACTGAATT
*
6772693 TCAAATTCGCAACGCGAATT
1 TCAAATTCGCAAC-TGAATT
*
6772713 T-AATTTCGCAAC
1 TCAAATTCGCAAC
6772725 AGGTTTTAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 40 0.87
20 6 0.13
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (19 bp):
TCAAATTCGCAACTGAATT
Found at i:6772713 original size:20 final size:20
Alignment explanation
Indices: 6772475--6772724 Score: 106
Period size: 20 Copynumber: 12.6 Consensus size: 20
6772465 AAATGACAAA
*
6772475 CAAATTCGCAACGCG-ATCT
1 CAAATTCGCAACGCGAATTT
*
6772494 CAAATTCGCAACGCGAATTC
1 CAAATTCGCAACGCGAATTT
* * *
6772514 CAATTTCGCAAC-CCAGTTT
1 CAAATTCGCAACGCGAATTT
*
6772533 CCAATTTCGCAACGCGAATATGT
1 -CAAATTCGCAACGCGAAT-T-T
*** * *
6772556 -AAA-TCGCGTTGTGATTTT
1 CAAATTCGCAACGCGAATTT
*** * *
6772574 CCAAATTCGCGTTGTGATTTT
1 -CAAATTCGCAACGCGAATTT
*** * *
6772595 CCAAATTCGCGTTGTG-ATAGT
1 -CAAATTCGCAACGCGAAT-TT
* *
6772616 CAAATTCTCAACGCG-ATAGT
1 CAAATTCGCAACGCGAAT-TT
*
6772636 CAAATTCGCAACGCGGAA-GT
1 CAAATTCGCAACGC-GAATTT
*
6772656 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATTT
* *
6772675 CAAATTTGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATTT
6772694 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATTT
*
6772714 -AATTTCGCAAC
1 CAAATTCGCAAC
6772725 AGGTTTTAGT
Statistics
Matches: 190, Mismatches: 28, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
18 4 0.02
19 60 0.32
20 85 0.45
21 38 0.20
22 2 0.01
23 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATTT
Found at i:6773656 original size:24 final size:24
Alignment explanation
Indices: 6773629--6773682 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
6773619 GTATTCAAAA
6773629 TTTGATCATGGTCAATACCCGGAC
1 TTTGATCATGGTCAATACCCGGAC
* * *
6773653 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCATGGTCAATACCCGGAC
6773677 TTTGAT
1 TTTGAT
6773683 GATGTGATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATCATGGTCAATACCCGGAC
Found at i:6773717 original size:34 final size:34
Alignment explanation
Indices: 6773674--6773738 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
6773664 TCAATACTCG
6773674 GATTTTGATGATGTGATGGAAGAAGAAACAGTCA
1 GATTTTGATGATGTGATGGAAGAAGAAACAGTCA
6773708 GATTTTGATGATGTGATGGAAGAAGAAACAG
1 GATTTTGATGATGTGATGGAAGAAGAAACAG
6773739 ACCCTGCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (34 bp):
GATTTTGATGATGTGATGGAAGAAGAAACAGTCA
Found at i:6773786 original size:24 final size:24
Alignment explanation
Indices: 6773754--6773809 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
6773744 GCATGTAATG
6773754 ATTTTGATATTGGTCAAAATCCAA
1 ATTTTGATATTGGTCAAAATCCAA
6773778 ATTTTGATATTGGTCAAAATCCAA
1 ATTTTGATATTGGTCAAAATCCAA
6773802 ATTTTGAT
1 ATTTTGAT
6773810 GATAAAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (24 bp):
ATTTTGATATTGGTCAAAATCCAA
Found at i:6775492 original size:18 final size:18
Alignment explanation
Indices: 6775469--6775504 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6775459 AAGCAAAAGG
*
6775469 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
6775487 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
6775505 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:6775855 original size:54 final size:54
Alignment explanation
Indices: 6775790--6775907 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
6775780 ATGTTGCGAT
* * * * **
6775790 CAACGTGAAAGTCAAATTCGCAACGCGATATAAGCATTGTGGCAGTCAAATTCA
1 CAACGCGAAAGTCAAATTCGCAACGCAAAATAAGCATTGCGAAAGTCAAATTCA
* * *
6775844 CAACGCGAAAGTCAAATTCGCAACGTAAAATAAGCGTTGCGAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCGCAACGCAAAATAAGCATTGCGAAAGTCAAATTCA
6775898 CAACGCGAAA
1 CAACGCGAAA
6775908 TAAGCGTTGC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (54 bp):
CAACGCGAAAGTCAAATTCGCAACGCAAAATAAGCATTGCGAAAGTCAAATTCA
Found at i:6775971 original size:34 final size:34
Alignment explanation
Indices: 6775848--6775954 Score: 196
Period size: 34 Copynumber: 3.1 Consensus size: 34
6775838 AATTCACAAC
**
6775848 GCGAAAGTCAAATTCGCAACGTAAAATAAGCGTT
1 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
6775882 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
1 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
6775916 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
1 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
6775950 GCGAA
1 GCGAA
6775955 TTTGACTATC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 71 1.00
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (34 bp):
GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTT
Found at i:6776095 original size:25 final size:25
Alignment explanation
Indices: 6776057--6776106 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
6776047 AAATCAATTA
*
6776057 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
6776082 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
6776107 GAAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:6776501 original size:24 final size:25
Alignment explanation
Indices: 6776474--6776528 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
6776464 TTTCAAATTC
*
6776474 ATTTCATATGT-AATTGGAGTTTGA
1 ATTTCAAATGTCAATTGGAGTTTGA
* *
6776498 ATTT-AAATTTCAATTTGAGTTTGA
1 ATTTCAAATGTCAATTGGAGTTTGA
6776522 ATTTCAA
1 ATTTCAA
6776529 TATAAATTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.15
24 20 0.77
25 2 0.08
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTTCAAATGTCAATTGGAGTTTGA
Found at i:6776514 original size:18 final size:18
Alignment explanation
Indices: 6776493--6776529 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6776483 GTAATTGGAG
6776493 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
6776511 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
6776529 T
1 T
6776530 ATAAATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:6776536 original size:24 final size:24
Alignment explanation
Indices: 6776485--6776537 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
6776475 TTTCATATGT
* * *
6776485 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
*
6776509 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTAAATATA
6776533 AATTT
1 AATTT
6776538 CGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:6776882 original size:39 final size:39
Alignment explanation
Indices: 6776839--6776925 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
6776829 TCAGATGCTC
6776839 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
*
6776878 ATCAAAATCCAAATCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
6776917 ATCAAAATC
1 ATCAAAATC
6776926 TACAACTTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
Found at i:6777168 original size:20 final size:20
Alignment explanation
Indices: 6777099--6777161 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
6777089 ATGTTGCGAT
*
6777099 CAACGCAAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
*
6777119 CAACGCGAAAATCAAATTCG
1 CAACGCGAAAGTCAAATTCG
6777139 CAACGCGAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
6777159 CAA
1 CAA
6777162 ACCGAAAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.14
Consensus pattern (20 bp):
CAACGCGAAAGTCAAATTCG
Found at i:6777237 original size:20 final size:20
Alignment explanation
Indices: 6777202--6777239 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6777192 GCAACGCTTA
**
6777202 TTTCGCGTTGCGAATTTGAC
1 TTTCGCGTTGAAAATTTGAC
6777222 TTTCGCGTTGAAAATTTG
1 TTTCGCGTTGAAAATTTG
6777240 TACCTTCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (20 bp):
TTTCGCGTTGAAAATTTGAC
Found at i:6777819 original size:6 final size:6
Alignment explanation
Indices: 6777805--6777836 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
6777795 GTGATGGAAT
*
6777805 AGGTAG AGGTGG AGGTGG AGGTGG AGGTGG AG
1 AGGTGG AGGTGG AGGTGG AGGTGG AGGTGG AG
6777837 AAGAGGCTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.62, T:0.16
Consensus pattern (6 bp):
AGGTGG
Found at i:6779482 original size:13 final size:13
Alignment explanation
Indices: 6779464--6779491 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6779454 GGGTTTCTTC
6779464 AACAAAAAGACAA
1 AACAAAAAGACAA
6779477 AACAAAAAGACAA
1 AACAAAAAGACAA
6779490 AA
1 AA
6779492 TAAATACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.14, G:0.07, T:0.00
Consensus pattern (13 bp):
AACAAAAAGACAA
Found at i:6779907 original size:19 final size:20
Alignment explanation
Indices: 6779865--6779945 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
6779855 GCGTAAAAAC
6779865 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
6779885 ATTTGA-TTTCTGTGTTGCG-
1 ATTTGACTTTC-GCGTTGCGA
* *
6779904 ATTT-ACAAATTCGCGTTGTGA
1 ATTTGAC--TTTCGCGTTGCGA
6779925 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
6779945 A
1 A
6779946 ATTGGAAACT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
18 1 0.02
19 8 0.16
20 31 0.63
21 7 0.14
22 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (20 bp):
ATTTGACTTTCGCGTTGCGA
Found at i:6779962 original size:60 final size:60
Alignment explanation
Indices: 6779865--6779989 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 60
6779855 GCGTAAAAAC
* ** *
6779865 ATTTGACTTTCGCGTTGCGAATTTGATTTCTGTGTTGCG-ATTTACAAATTCGCGTTGTGA
1 ATTTGACTTTCGCGTTGCGAATTGGATAACTGTGTTGCGAAATT-CAAATTCGCGTTGTGA
**
6779925 ATTTGACTTTCGCGTTGCGAAATTGGA-AACTAG-GTTGCGAAATTGGAATTCGCGTTGTGA
1 ATTTGACTTTCGCGTTGCG-AATTGGATAACT-GTGTTGCGAAATTCAAATTCGCGTTGTGA
6779985 ATTTG
1 ATTTG
6779990 TTGGTCATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
60 46 0.82
61 10 0.18
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.39
Consensus pattern (60 bp):
ATTTGACTTTCGCGTTGCGAATTGGATAACTGTGTTGCGAAATTCAAATTCGCGTTGTGA
Found at i:6779981 original size:20 final size:20
Alignment explanation
Indices: 6779911--6779981 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
6779901 GCGATTTACA
* *
6779911 AATTCGCGTTGTG-AATTTG
1 AATTCGCGTTGCGAAATTGG
*
6779930 ACTTTCGCGTTGCGAAATTGG
1 A-ATTCGCGTTGCGAAATTGG
* *
6779951 AAACTAG-GTTGCGAAATTGG
1 -AATTCGCGTTGCGAAATTGG
6779971 AATTCGCGTTG
1 AATTCGCGTTG
6779982 TGAATTTGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
19 5 0.12
20 27 0.68
21 7 0.17
22 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (20 bp):
AATTCGCGTTGCGAAATTGG
Found at i:6780268 original size:23 final size:22
Alignment explanation
Indices: 6780242--6780301 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
6780232 ATCAAGTAAA
6780242 ATAACAAATTAGGTAACGCTTAT
1 ATAACAAA-TAGGTAACGCTTAT
** *
6780265 ATAATGTAATAGGTAGCGCTTAT
1 ATAA-CAAATAGGTAACGCTTAT
*
6780288 ATAATAAAATAGGT
1 ATAA-CAAATAGGT
6780302 TAATTACTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 29 0.94
24 2 0.06
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (22 bp):
ATAACAAATAGGTAACGCTTAT
Found at i:6780369 original size:87 final size:87
Alignment explanation
Indices: 6780223--6780463 Score: 410
Period size: 87 Copynumber: 2.8 Consensus size: 87
6780213 TCATTTAACC
* * *
6780223 GGAAATATTATCAAGTAAAATAACAAATTAGGTAACGCTTATATAATGTAATAGGTAGCGCTTAT
1 GGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTAT
6780288 ATAATAAAATAGGTTAATTACT
66 ATAATAAAATAGGTTAATTACT
* * * * *
6780310 GGAAACATTATCAAGCACAATAACATATTAAGTAGCGTTTATATAATGTAATAGATAGCGCTTAT
1 GGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTAT
6780375 ATAATAAAATAGGTTAATTACT
66 ATAATAAAATAGGTTAATTACT
6780397 GGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTAT
1 GGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTAT
6780462 AT
66 AT
6780464 TGATCTATTC
Statistics
Matches: 141, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 141 1.00
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (87 bp):
GGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTAT
ATAATAAAATAGGTTAATTACT
Found at i:6780385 original size:23 final size:23
Alignment explanation
Indices: 6780342--6780386 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
6780332 ACATATTAAG
* **
6780342 TAGCGTTTATATAATGTAATAGA
1 TAGCGCTTATATAATAAAATAGA
6780365 TAGCGCTTATATAATAAAATAG
1 TAGCGCTTATATAATAAAATAG
6780387 GTTAATTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
TAGCGCTTATATAATAAAATAGA
Found at i:6781115 original size:200 final size:199
Alignment explanation
Indices: 6780476--6781144 Score: 927
Period size: 198 Copynumber: 3.4 Consensus size: 199
6780466 ATCTATTCTA
* *
6780476 TCATAAAACCGGTATATTTATACCGGTAACATTGTAAATTTACCTATTACATTATAATTATCGGT
1 TCATAAAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGT
* * * *
6780541 TTTGATGTTTTCGGGATCGATACAATTT--TAAATGTATCGACACTTTATGCGTGCACCTCGTTG
66 TTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTG
* * * *
6780604 GACATTCATTCTGGAAAAAAATAGCGACACAAACTTAAAACGTGTCGATACATTATGTAGAACTA
130 GACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTA
6780669 TTTTC
195 TTTTC
* * * * *** * *
6780674 TCAGAAAACCTATACATTTCTACCCCATACATTGTAAATTTACCTATTACATTGTAATTATCAGT
1 TCATAAAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGT
*
6780739 TTGGAT-TTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTGG
66 TTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTGG
* *
6780803 ATATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATATAGACCTAT
131 ACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTAT
6780868 TTTC
196 TTTC
* *
6780872 TCATAAAACCGATATATTTCTACCGAG-TACATTGTAAATTTACCTATTACATTGTAATTATCGG
1 TCATAAAACCGATATATTTATACCG-GTTACATTGTAAATTTACCTATTACATTATAATTATCGG
* *
6780936 TTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCAACACTTTATGTGTGCACCTCGTTT
65 TTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTG
* *** *
6781001 GACATTCATTCTGGACAAAATGTATCGACAC-TTTTTAAATTTGTGTCGATACATTATGTAGACC
130 GACATTCATTCTGGA-AAAAAGTATCGACACAAACTTAAA-ATGTGTCGATACATTATGTAGACC
6781065 TATTCTT-
193 TATT-TTC
* * * * *
6781072 TCATAAATCTGGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGT
1 TCATAAAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGT
6781137 TTCGATGT
66 TTCGATGT
6781145 AACATATGCG
Statistics
Matches: 419, Mismatches: 44, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
196 3 0.01
197 15 0.04
198 220 0.53
199 75 0.18
200 104 0.25
201 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (199 bp):
TCATAAAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGT
TTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTGG
ACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTAT
TTTC
Found at i:6781279 original size:30 final size:31
Alignment explanation
Indices: 6781245--6781329 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 31
6781235 TTATAATAAA
*
6781245 TAAT-AAATATAATTTATAATAA-TTTTATTT
1 TAATAAAATATAA-TAATAATAATTTTTATTT
*
6781275 TAATAAAATATAATAATCATAATTTTTA-TT
1 TAATAAAATATAATAATAATAATTTTTATTT
6781305 T-ATAAAATTATAGAT-ATAAT-ATTTT
1 TAATAAAA-TATA-ATAATAATAATTTT
6781330 AATAATAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
29 11 0.23
30 22 0.46
31 15 0.31
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (31 bp):
TAATAAAATATAATAATAATAATTTTTATTT
Found at i:6781337 original size:14 final size:14
Alignment explanation
Indices: 6781256--6781341 Score: 52
Period size: 14 Copynumber: 6.2 Consensus size: 14
6781246 AATAAATATA
**
6781256 ATTTATAATAATTTT
1 ATTT-TAATAATAAT
6781271 ATTTTAATAA-AAT
1 ATTTTAATAATAAT
** *
6781284 ATAATAATCATAAT
1 ATTTTAATAATAAT
* * *
6781298 -TTTTATTTATAAA
1 ATTTTAATAATAAT
*
6781311 ATTATAGAT-ATAAT
1 ATTTTA-ATAATAAT
6781325 ATTTTAATAATAAT
1 ATTTTAATAATAAT
6781339 ATT
1 ATT
6781342 GACATAAATA
Statistics
Matches: 53, Mismatches: 14, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
13 18 0.34
14 30 0.57
15 5 0.09
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (14 bp):
ATTTTAATAATAAT
Found at i:6781424 original size:24 final size:25
Alignment explanation
Indices: 6781356--6781424 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
6781346 TAAATAATAT
*
6781356 TAAATAA-ATTATTCTAATATT-TTAA
1 TAAATAATATTA-T-TATTATTGTTAA
6781381 -AAATAATATTATTATT-TTGTTAA
1 TAAATAATATTATTATTATTGTTAA
6781404 TAAATAATATTATT-TTATTGT
1 TAAATAATATTATTATTATTGT
6781425 ATTTGATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 2 0.05
23 9 0.23
24 24 0.62
25 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (25 bp):
TAAATAATATTATTATTATTGTTAA
Found at i:6781500 original size:2 final size:2
Alignment explanation
Indices: 6781495--6781549 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
6781485 TTTTTAAAAT
6781495 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6781537 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
6781550 TATTTTATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6782166 original size:14 final size:15
Alignment explanation
Indices: 6782124--6782168 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
6782114 AATTATAGAT
*
6782124 ATAATATTTTAAT-A
1 ATAATATTTAAATAA
*
6782138 ATAATATTTACATAA
1 ATAATATTTAAATAA
6782153 ATAATA-TTAAATAA
1 ATAATATTTAAATAA
6782167 AT
1 AT
6782169 TATTCTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATTTAAATAA
Found at i:6782228 original size:24 final size:25
Alignment explanation
Indices: 6782160--6782228 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
6782150 TAAATAATAT
*
6782160 TAAATAA-ATTATTCTAATATT-TTAA
1 TAAATAATATTA-T-TATTATTGTTAA
6782185 -AAATAATATTATTATT-TTGTTAA
1 TAAATAATATTATTATTATTGTTAA
6782208 TAAATAATATTATT-TTATTGT
1 TAAATAATATTATTATTATTGT
6782229 ATTTGATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 2 0.05
23 9 0.23
24 24 0.62
25 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (25 bp):
TAAATAATATTATTATTATTGTTAA
Found at i:6782569 original size:23 final size:23
Alignment explanation
Indices: 6782534--6782584 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
6782524 CTAGTAATTA
**
6782534 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
6782557 ACCTATTACATTATATAAGCGGT
1 ACCTATTACATTATATAAGCGCT
6782580 ACCTA
1 ACCTA
6782585 ATATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:6782617 original size:87 final size:87
Alignment explanation
Indices: 6782470--6782680 Score: 343
Period size: 87 Copynumber: 2.4 Consensus size: 87
6782460 TAAATAATTA
**
6782470 ACCTATTTTATTATATAAGCGCTACCTAATATATTATTGTGCTTGATAATGTTTCTAGTAATTAA
1 ACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTGATAATGTTTCTAGTAATTAA
6782535 CCTATTTTATTATATAAGCGCT
66 CCTATTTTATTATATAAGCGCT
* *
6782557 ACCTATTACATTATATAAGCGGTACCTAATATGTTATTGTGCTTGATAATGTTT-TCAGTAATTA
1 ACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTGATAATGTTTCT-AGTAATTA
6782621 ACCTATTTTATTATATAAGCGCT
65 ACCTATTTTATTATATAAGCGCT
* * *
6782644 ACCTATTACATTATATAAACGCTACCTATTACATTAT
1 ACCTATTACATTATATAAGCGCTACCTAATATATTAT
6782681 ATAAGCAATA
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
86 1 0.01
87 113 0.99
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (87 bp):
ACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTGATAATGTTTCTAGTAATTAA
CCTATTTTATTATATAAGCGCT
Found at i:6782656 original size:23 final size:23
Alignment explanation
Indices: 6782621--6782686 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
6782611 TCAGTAATTA
**
6782621 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
6782644 ACCTATTACATTATATAAACGCT
1 ACCTATTACATTATATAAGCGCT
6782667 ACCTATTACATTATATAAGC
1 ACCTATTACATTATATAAGC
6782687 AATACTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.38
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:6782680 original size:110 final size:110
Alignment explanation
Indices: 6782534--6782769 Score: 373
Period size: 110 Copynumber: 2.1 Consensus size: 110
6782524 CTAGTAATTA
** * **
6782534 ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTATTGTGC
1 ACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCAATACCTAATATGTTATTGTGC
** *
6782599 TTGATAATGTTTTCAGTAATTAACCTATTTTATTATATAAGCGCT
66 TTGATAATGTTTTCAGTAATTAACCTATTACATTATATAAACGCT
*
6782644 ACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCAATACTTAATATGTTATTGTGC
1 ACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCAATACCTAATATGTTATTGTGC
*
6782709 TTGATAATGTTTTCAGTAGTTAACCTATTACATTATATAAACGCT
66 TTGATAATGTTTTCAGTAATTAACCTATTACATTATATAAACGCT
*
6782754 ACCTATTACATCATAT
1 ACCTATTACATTATAT
6782770 TTTTACCTGT
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
110 115 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (110 bp):
ACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCAATACCTAATATGTTATTGTGC
TTGATAATGTTTTCAGTAATTAACCTATTACATTATATAAACGCT
Found at i:6784512 original size:31 final size:31
Alignment explanation
Indices: 6784455--6784515 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
6784445 ACTATGTATT
**
6784455 TAATCACCCAACTATTCAAGTGGTTCCGTTC
1 TAATCACCCAACTATTCAAGCAGTTCCGTTC
*
6784486 TAATCACCTAACTATTCACA-CAGTTCCGTT
1 TAATCACCCAACTATTCA-AGCAGTTCCGTT
6784516 TTGGTCATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (31 bp):
TAATCACCCAACTATTCAAGCAGTTCCGTTC
Found at i:6791109 original size:17 final size:18
Alignment explanation
Indices: 6791066--6791106 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6791056 GAATTATATT
6791066 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
6791083 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
6791101 ATTAAA
1 AGTAAA
6791107 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:6794510 original size:77 final size:78
Alignment explanation
Indices: 6794398--6794541 Score: 254
Period size: 77 Copynumber: 1.9 Consensus size: 78
6794388 TGCATGTTTA
6794398 ATTCATGATCTATGGATATCTTTTCTACTGAATTGATATGTATGAACTCTGATTTCCTACTACCA
1 ATTCATGATCTATGGATATCTTTTCTACTGAATTGATATGTATGAACTCTGATTTCCTACTACCA
6794463 CTCTGTCTGTCTG
66 CTCTGTCTGTCTG
* * *
6794476 ATTCATGATCTCTGGATA-CTTTTCTACTGAATTGATATGTATGAACTCTGATTTCCTGCTGCCA
1 ATTCATGATCTATGGATATCTTTTCTACTGAATTGATATGTATGAACTCTGATTTCCTACTACCA
6794540 CT
66 CT
6794542 GGTTATTGTC
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
77 46 0.73
78 17 0.27
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (78 bp):
ATTCATGATCTATGGATATCTTTTCTACTGAATTGATATGTATGAACTCTGATTTCCTACTACCA
CTCTGTCTGTCTG
Found at i:6794644 original size:35 final size:35
Alignment explanation
Indices: 6794605--6794671 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
6794595 AAGTCTCTGC
6794605 AGGTTCAG-CTCGATCAAACTGGTAATTCCTTATAT
1 AGGTTCAGAC-CGATCAAACTGGTAATTCCTTATAT
*
6794640 AGGTTCAGACCGATCGAACTGGTAATTCCTTA
1 AGGTTCAGACCGATCAAACTGGTAATTCCTTA
6794672 CGGATATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (35 bp):
AGGTTCAGACCGATCAAACTGGTAATTCCTTATAT
Found at i:6795266 original size:35 final size:35
Alignment explanation
Indices: 6795226--6795294 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
6795216 GAAGTCTCTG
6795226 TAGGTTCAG-CTAGATCAAACTGGTAATTCCTTATA
1 TAGGTTCAGAC-AGATCAAACTGGTAATTCCTTATA
* *
6795261 TAGGTTCAGACCGATCGAACTGGTAATTCCTTAT
1 TAGGTTCAGACAGATCAAACTGGTAATTCCTTAT
6795295 GGATCTAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (35 bp):
TAGGTTCAGACAGATCAAACTGGTAATTCCTTATA
Found at i:6795570 original size:622 final size:621
Alignment explanation
Indices: 6794388--6795631 Score: 2191
Period size: 622 Copynumber: 2.0 Consensus size: 621
6794378 GTTTTAAATC
*
6794388 TGCATGTTTAATTCATGATCTATGGATATCTTTTCTACTGAATTGATATGTATGAACTCTGATTT
1 TGCATGTTTAATTCATGATCTATGGATATCGTTTCTACTGAATTGATATGTATGAACTCTGATTT
* *
6794453 CCTACTACCACTCTGTCTGTCTGATTCATGATCTCTGGATACTTTTCTACTGAATTGATATGTAT
66 CCTACTACCACTCTGACTGTCTGATTAATGATCTCTGGATACTTTTCTACTGAATTGATATGTAT
* *
6794518 GAACTCTGATTTCCTGCTGCCACTGGTTATTGTCTGAAAAAAATGTTTTTCTTCGGGGTGCTCTG
131 GAACTCTGATTTCCTGCTGCCACTGGTTACTGTCTAAAAAAAATGTTTTTCTTCGGGGTGCTCTG
*
6794583 GGATATGGTATGAAGTCTCTGCAGGTTCAGCTCGATCAAACTGGTAATTCCTTATATAGGTTCAG
196 GGATATGGTATGAAGTCTCTGCAGGTTCAGCTAGATCAAACTGGTAATTCCTTATATAGGTTCAG
* *
6794648 ACCGATCGAACTGGTAATTCCTTACGGATATAATGTGACTCTTGGGTGGGCTCCTGGGCCTAGTG
261 ACCGATCGAACTGGTAATTCCTTACGGATATAAAGTGACTCTTAGGTGGGCTCCTGGGCCTAGTG
* * *
6794713 GTAAGACTTTATGGACTCTAAGGAACTCTCTTAAGGTGGCACATCTGCTATGTGATTTGGGTAAG
326 GTAAGACCTTATGAACCCTAAGGAACTCTCTTAAGGTGGCACATCTGCTATGTGATTTGGGTAAG
* *
6794778 TCCTTATGGACTTGAGGGCACTCCCTTCAGGTGGGCACTTACGCTTCGGCTAGGATAAGACCTTA
391 TCCTTATAGACCTGAGGGCACTCCCTTCAGGTGGGCACTTACGCTTCGGCTAGGATAAGACCTTA
* * *
6794843 TGGACCCAAGGTGTTCCCTTAGATTGACACCTATACCCAATAGACATAGGGTAAGTCCTTATGGA
456 TGGACCCAAGGTGTTCCCTTAGATTAACACATATACCCAATAGACATAAGGTAAGTCCTTATGGA
* *
6794908 TGTAGTTTTGGGGAACTGTATATTGGCATTCGGTTAGAGGGTTTTGCCATGATTTTAAAAATACA
521 TGTAGTTTTGGGGAACTATATATTGGAATTCGGTTAGAGGGTTTTGCCATGATTTTAAAAATACA
6794973 TTTTAATTTGTTACTGCTTTAAAAAGATTTGTACCT
586 TTTTAATTTGTTACTGCTTTAAAAAGATTTGTACCT
6795009 TGCATGTTTAATTCATGATCTATGGATATCGTTTCTACTGAATTGATATGTATGAACTCTGATTT
1 TGCATGTTTAATTCATGATCTATGGATATCGTTTCTACTGAATTGATATGTATGAACTCTGATTT
*
6795074 CCTACTTCCACTCTGACTGTCTGATTAATGATCTCTGGATACTGTTTCTACTGAATTGATATGTA
66 CCTACTACCACTCTGACTGTCTGATTAATGATCTCTGGATACT-TTTCTACTGAATTGATATGTA
6795139 TGAACTCTGATTTCCTGCTGCCACTGGTTACTGTCTAAAAAAAATGTTTTTCTTCGGGGTGCTCT
130 TGAACTCTGATTTCCTGCTGCCACTGGTTACTGTCTAAAAAAAATGTTTTTCTTCGGGGTGCTCT
* *
6795204 GGGATCTGGTATGAAGTCTCTGTAGGTTCAGCTAGATCAAACTGGTAATTCCTTATATAGGTTCA
195 GGGATATGGTATGAAGTCTCTGCAGGTTCAGCTAGATCAAACTGGTAATTCCTTATATAGGTTCA
* *
6795269 GACCGATCGAACTGGTAATTCCTTATGGATCTAAAGTGACTCTTAGGTGGGCTCCTGGGCCTAGT
260 GACCGATCGAACTGGTAATTCCTTACGGATATAAAGTGACTCTTAGGTGGGCTCCTGGGCCTAGT
* *
6795334 GGTAAGACCTTATGAACCCTAAGGAACTCTCTTAGGGTGGCACCTCTGCTATGTGATTTGGGTAA
325 GGTAAGACCTTATGAACCCTAAGGAACTCTCTTAAGGTGGCACATCTGCTATGTGATTTGGGTAA
* *
6795399 GTCCTTATAGACCTGAGGGCACTTCCTTCAGGTGGGCACTTACGCTTCGGCTAGGGTAAGACCTT
390 GTCCTTATAGACCTGAGGGCACTCCCTTCAGGTGGGCACTTACGCTTCGGCTAGGATAAGACCTT
* * *
6795464 ATGGACCCAAGGTGTTCCCTTAGATTAACACATATGCCCAATAGGCCTAAGGTAAGTCCTTATGG
455 ATGGACCCAAGGTGTTCCCTTAGATTAACACATATACCCAATAGACATAAGGTAAGTCCTTATGG
6795529 ATGTAGTTTTGGGGAACTATATATTGGAATTCGGTTAGAGGGTTTTGCCATGATTTTAAAAATAC
520 ATGTAGTTTTGGGGAACTATATATTGGAATTCGGTTAGAGGGTTTTGCCATGATTTTAAAAATAC
* *
6795594 ATTTTAATTTGTTATTGTTTTAAAAAGATTTGTACCT
585 ATTTTAATTTGTTACTGCTTTAAAAAGATTTGTACCT
6795631 T
1 T
6795632 TTCACTAGTT
Statistics
Matches: 590, Mismatches: 32, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
621 104 0.18
622 486 0.82
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (621 bp):
TGCATGTTTAATTCATGATCTATGGATATCGTTTCTACTGAATTGATATGTATGAACTCTGATTT
CCTACTACCACTCTGACTGTCTGATTAATGATCTCTGGATACTTTTCTACTGAATTGATATGTAT
GAACTCTGATTTCCTGCTGCCACTGGTTACTGTCTAAAAAAAATGTTTTTCTTCGGGGTGCTCTG
GGATATGGTATGAAGTCTCTGCAGGTTCAGCTAGATCAAACTGGTAATTCCTTATATAGGTTCAG
ACCGATCGAACTGGTAATTCCTTACGGATATAAAGTGACTCTTAGGTGGGCTCCTGGGCCTAGTG
GTAAGACCTTATGAACCCTAAGGAACTCTCTTAAGGTGGCACATCTGCTATGTGATTTGGGTAAG
TCCTTATAGACCTGAGGGCACTCCCTTCAGGTGGGCACTTACGCTTCGGCTAGGATAAGACCTTA
TGGACCCAAGGTGTTCCCTTAGATTAACACATATACCCAATAGACATAAGGTAAGTCCTTATGGA
TGTAGTTTTGGGGAACTATATATTGGAATTCGGTTAGAGGGTTTTGCCATGATTTTAAAAATACA
TTTTAATTTGTTACTGCTTTAAAAAGATTTGTACCT
Found at i:6801220 original size:33 final size:33
Alignment explanation
Indices: 6801171--6801244 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
6801161 CCAATCCCCT
*
6801171 TCACAAAGGATAAGAAATGTAAACAAGAAAACC
1 TCACAAAGAATAAGAAATGTAAACAAGAAAACC
*
6801204 TCACAAAGAATTAGAAATGTAAACAAGAAAACC
1 TCACAAAGAATAAGAAATGTAAACAAGAAAACC
*
6801237 TCATAAAG
1 TCACAAAG
6801245 GTAGGTGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.57, C:0.15, G:0.14, T:0.15
Consensus pattern (33 bp):
TCACAAAGAATAAGAAATGTAAACAAGAAAACC
Found at i:6802548 original size:42 final size:41
Alignment explanation
Indices: 6802489--6802605 Score: 164
Period size: 42 Copynumber: 2.8 Consensus size: 41
6802479 TTTCCTCGAA
* *
6802489 TTTCCGTGTTTGTTTCACGTAATTCGTTTTCC-AGAAACTGTT
1 TTTCCGTGTTTATTTCACGTAATTCGTTTTCCGA-AAAATG-T
*
6802531 TTTCCGTGTTTATTTCACGTAATTCGTTTTTCGAAAAATGT
1 TTTCCGTGTTTATTTCACGTAATTCGTTTTCCGAAAAATGT
*
6802572 TTTCCTGTGTTTATTTCACGTAATTGGTTTTCCG
1 TTTCC-GTGTTTATTTCACGTAATTCGTTTTCCG
6802606 GAATGTAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
41 6 0.09
42 61 0.90
43 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.50
Consensus pattern (41 bp):
TTTCCGTGTTTATTTCACGTAATTCGTTTTCCGAAAAATGT
Found at i:6802829 original size:32 final size:31
Alignment explanation
Indices: 6802789--6802848 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
6802779 AAATATTATT
6802789 TATTTATTTATGAATATT-TATAATAATATAA
1 TATTTATTTATGAATATTATATAA-AATATAA
* *
6802820 TATTATATTTTTTAATATTATATAAAATA
1 TATT-TATTTATGAATATTATATAAAATA
6802849 ATCAATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 4 0.16
32 16 0.64
33 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (31 bp):
TATTTATTTATGAATATTATATAAAATATAA
Found at i:6802925 original size:28 final size:28
Alignment explanation
Indices: 6802894--6802957 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
6802884 TTTATTTTAA
6802894 TAATATAT-AATAAAAATATTTATATATT
1 TAATA-ATGAATAAAAATATTTATATATT
* *
6802922 TAATAATGAATAATATTATTTATATATT
1 TAATAATGAATAAAAATATTTATATATT
6802950 TAAATAAT
1 T-AATAAT
6802958 ATTTTAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 2 0.06
28 24 0.75
29 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (28 bp):
TAATAATGAATAAAAATATTTATATATT
Found at i:6802937 original size:19 final size:19
Alignment explanation
Indices: 6802915--6802967 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
6802905 AAAAATATTT
*
6802915 ATATATTTAATAATGAATA
1 ATATATTTAATAATAAATA
*
6802934 ATATTATTTATATATTTAAATA
1 ATA-TATTTA-ATA-ATAAATA
6802956 ATAT-TTTAATAA
1 ATATATTTAATAA
6802968 AGATTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.21
20 10 0.36
21 4 0.14
22 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATATATTTAATAATAAATA
Found at i:6802940 original size:60 final size:60
Alignment explanation
Indices: 6802808--6802968 Score: 154
Period size: 60 Copynumber: 2.7 Consensus size: 60
6802798 ATGAATATTT
* * *
6802808 ATAATAATATAATATTATATT-TTTTAATATTATATAA-AATAATCAATTATATTATAATA
1 ATAATAATATTATATTAT-TTATTTTAATAATATATAATAAAAATCAATTATATTATAATA
* *
6802867 AT-ATAAGATATTATATT-TTTATTTTAATAATATATAATAAAAAT-ATTTATATATTTAATA
1 ATAAT-A-ATATTATATTATTTATTTTAATAATATATAATAAAAATCAATTATAT-TATAATA
* * *
6802927 ATGAATAATATTAT-TTATATATTTAAATAATATTTTAATAAA
1 AT-AATAATATTATATTATTTATTTTAATAATA-TATAATAAA
6802969 GATTTAAAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
58 4 0.05
59 28 0.33
60 42 0.49
61 9 0.11
62 2 0.02
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (60 bp):
ATAATAATATTATATTATTTATTTTAATAATATATAATAAAAATCAATTATATTATAATA
Found at i:6803390 original size:15 final size:15
Alignment explanation
Indices: 6803348--6803391 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
6803338 TTCCAGAAAT
*
6803348 GTAATTCATTTTACA
1 GTAATTCATTTTCCA
**
6803363 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
6803377 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
6803392 ATTCCAGTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:6808569 original size:35 final size:35
Alignment explanation
Indices: 6808530--6808604 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
6808520 AGAGGAAGAA
6808530 AATAAAATATGAAGAGAACTAATTAACAAGAAGCC
1 AATAAAATATGAAGAGAACTAATTAACAAGAAGCC
6808565 AATAAAATATGAAGAGAACTAATTAACAAGAAGCC
1 AATAAAATATGAAGAGAACTAATTAACAAGAAGCC
6808600 AATAA
1 AATAA
6808605 CAATTCAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.59, C:0.11, G:0.13, T:0.17
Consensus pattern (35 bp):
AATAAAATATGAAGAGAACTAATTAACAAGAAGCC
Found at i:6808597 original size:19 final size:19
Alignment explanation
Indices: 6808540--6808597 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
6808530 AATAAAATAT
6808540 GAAGAGAACTAATTAACAA
1 GAAGAGAACTAATTAACAA
** * *
6808559 GAAGCCAA-TAA--AATAT
1 GAAGAGAACTAATTAACAA
6808575 GAAGAGAACTAATTAACAA
1 GAAGAGAACTAATTAACAA
6808594 GAAG
1 GAAG
6808598 CCAATAACAA
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
16 9 0.32
17 3 0.11
18 3 0.11
19 13 0.46
ACGTcount: A:0.57, C:0.10, G:0.17, T:0.16
Consensus pattern (19 bp):
GAAGAGAACTAATTAACAA
Found at i:6812397 original size:16 final size:16
Alignment explanation
Indices: 6812376--6812406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6812366 TGGTAGATTC
6812376 TTTTTAAAAATAATAT
1 TTTTTAAAAATAATAT
*
6812392 TTTTTAAATATAATA
1 TTTTTAAAAATAATA
6812407 ACTTATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTTAAAAATAATAT
Found at i:6822652 original size:3 final size:3
Alignment explanation
Indices: 6822646--6822690 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
6822636 TTATATAATA
* * *
6822646 ATT ATT ATT ATA ATT ATA ATT ATT ATT ATT ATT AAT ATAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT
6822691 GTAATATTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:6828101 original size:15 final size:15
Alignment explanation
Indices: 6828081--6828112 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6828071 ATCAATACCT
6828081 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
6828096 TTTTGCATACATTCA
1 TTTTGCATACATGCA
6828111 TT
1 TT
6828113 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:6835454 original size:4 final size:4
Alignment explanation
Indices: 6835445--6835490 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
6835435 TTGAAGAGAA
*
6835445 AAAG AAAG AAAG AAAG AAA- AAAA AAAG AAAAG AAA- AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG AAA
6835491 AAGGAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
3 6 0.16
4 28 0.74
5 4 0.11
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:6835460 original size:12 final size:11
Alignment explanation
Indices: 6835438--6835504 Score: 82
Period size: 12 Copynumber: 5.9 Consensus size: 11
6835428 ATTATGCTTG
6835438 AAGAGAAAAAGA
1 AAGA-AAAAAGA
6835450 AAGAAAGAAAGA
1 AAGAAA-AAAGA
*
6835462 AAAAAAAAAGAA
1 AAGAAAAAAG-A
6835474 AAGAAAAAAGA
1 AAGAAAAAAGA
*
6835485 AAGAAAAAGGA
1 AAGAAAAAAGA
6835496 AA-AAAAAAG
1 AAGAAAAAAG
6835505 GGGTCAAGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
10 6 0.12
11 19 0.39
12 24 0.49
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:6835473 original size:11 final size:11
Alignment explanation
Indices: 6835443--6835503 Score: 77
Period size: 11 Copynumber: 5.4 Consensus size: 11
6835433 GCTTGAAGAG
6835443 AAAAAGAAAGAA
1 AAAAAGAAA-AA
*
6835455 AGAAAGAAAAA
1 AAAAAGAAAAA
6835466 AAAAAGAAAAGA
1 AAAAAGAAAA-A
*
6835478 AAAAAGAAAGA
1 AAAAAGAAAAA
*
6835489 AAAAGGAAAAA
1 AAAAAGAAAAA
6835500 AAAA
1 AAAA
6835504 GGGGTCAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
11 25 0.58
12 18 0.42
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:6835473 original size:23 final size:22
Alignment explanation
Indices: 6835443--6835504 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
6835433 GCTTGAAGAG
6835443 AAAAAGAAAGAAAGAAAGAAAAA
1 AAAAAGAAAGAAA-AAAGAAAAA
*
6835466 AAAAAGAAAAGAAAAAAGAAAGA
1 AAAAAG-AAAGAAAAAAGAAAAA
*
6835489 AAAAGGAAA-AAAAAAG
1 AAAAAGAAAGAAAAAAG
6835505 GGGTCAAGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.19
22 3 0.08
23 19 0.53
24 7 0.19
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAGAAAAAAGAAAAA
Found at i:6835476 original size:16 final size:16
Alignment explanation
Indices: 6835453--6835504 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
6835443 AAAAAGAAAG
6835453 AAAG-AAAGAAAAAAA
1 AAAGAAAAGAAAAAAA
*
6835468 AAAGAAAAGAAAAAAG
1 AAAGAAAAGAAAAAAA
*
6835484 AAAGAAAAAGGAAAAAA
1 AAAG-AAAAGAAAAAAA
6835501 AAAG
1 AAAG
6835505 GGGTCAAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
15 4 0.12
16 14 0.44
17 14 0.44
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGAAAAAAA
Found at i:6835850 original size:16 final size:16
Alignment explanation
Indices: 6835822--6835858 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
6835812 CAATTCTATC
6835822 TATTTCAAGTTCAATT
1 TATTTCAAGTTCAATT
6835838 TATTT-AAGATTCAATT
1 TATTTCAAG-TTCAATT
6835854 TATTT
1 TATTT
6835859 TCGAAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.54
Consensus pattern (16 bp):
TATTTCAAGTTCAATT
Found at i:6837002 original size:83 final size:83
Alignment explanation
Indices: 6836863--6837173 Score: 435
Period size: 83 Copynumber: 3.6 Consensus size: 83
6836853 AACAAATGCC
* *
6836863 ATGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
**
6836928 ATTGAATTTGGAAGAATA
66 ATTGAATTTGGAAGAGGA
*
6836946 ATGTGCTCATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
6837011 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
*
6837029 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTTGGTATGAACCA-C
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTA--AA--ATC
*
6837093 AGAACCAGTTATTGAATTTGGAAGAGGA
62 ---A--A-TCATTGAATTTGGAAGAGGA
* * *
6837121 ATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCTGATTTGATTTG
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTG
6837174 ATATAAAACC
Statistics
Matches: 206, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
83 132 0.64
85 2 0.01
86 1 0.00
87 1 0.00
89 1 0.00
91 1 0.00
92 68 0.33
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (83 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
ATTGAATTTGGAAGAGGA
Found at i:6837173 original size:175 final size:166
Alignment explanation
Indices: 6836863--6837173 Score: 444
Period size: 175 Copynumber: 1.8 Consensus size: 166
6836853 AACAAATGCC
6836863 ATGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
* *
6836928 ATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAAGAATGTGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
6836993 GATTTGGTAAAATCAATCATTGAATTTGGAAGAGGA
131 GATTTGGTAAAATCAATCATTGAATTTGGAAGAGGA
* *
6837029 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTTGGTATGAACCA-C
1 ATGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA--AA--ATC
* * *
6837093 AGAACCAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
62 ---A--A-TCATTGAATTTGGAAGAAGAATGTGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGT
* *
6837158 TCTCTGATTTGATTTG
121 TATCTGATCTGATTTG
6837174 ATATAAAACC
Statistics
Matches: 126, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
166 54 0.43
168 2 0.02
169 1 0.01
170 1 0.01
172 1 0.01
174 1 0.01
175 66 0.52
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (166 bp):
ATGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
ATTGAATTTGGAAGAAGAATGTGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
GATTTGGTAAAATCAATCATTGAATTTGGAAGAGGA
Found at i:6837188 original size:92 final size:92
Alignment explanation
Indices: 6837011--6837188 Score: 286
Period size: 92 Copynumber: 1.9 Consensus size: 92
6837001 AAAATCAATC
*
6837011 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
1 ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
* * *
6837076 GTTTTGGTATGAACCACAGAACCAGTT
66 GATTTGATATAAACCACAGAACCAGTT
* *
6837103 ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCTGATTT
1 ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
6837168 GATTTGATATAAAACC-CAGAA
66 GATTTGATAT-AAACCACAGAA
6837189 ACAATCATTG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 75 0.95
93 4 0.05
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (92 bp):
ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
GATTTGATATAAACCACAGAACCAGTT
Found at i:6837608 original size:52 final size:52
Alignment explanation
Indices: 6837544--6837648 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
6837534 TATCGATATC
6837544 TGTGAAAACATCTTGAAAGATCACTTCATAATCAGATGAGTTGTTATCAGAA
1 TGTGAAAACATCTTGAAAGATCACTTCATAATCAGATGAGTTGTTATCAGAA
*
6837596 TGTGAAATCATCTTGAAAGATCACTTCATAATCAGATGAGTTGTTATCAGAA
1 TGTGAAAACATCTTGAAAGATCACTTCATAATCAGATGAGTTGTTATCAGAA
6837648 T
1 T
6837649 TAACATGTTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTGAAAACATCTTGAAAGATCACTTCATAATCAGATGAGTTGTTATCAGAA
Found at i:6838267 original size:113 final size:113
Alignment explanation
Indices: 6837928--6840169 Score: 3852
Period size: 113 Copynumber: 19.8 Consensus size: 113
6837918 GCAAAGATTT
*
6837928 AAATCCATCACTTGATGGATCAGCTTTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAG-AAGTTCATAATAAGAAGAACTCATCTGAA
* * * *
6837992 GAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTT-TCGTTT
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTAT-GCTC
* * * *** * *
6838041 GAATTCATCA-TGTGATGGATTAAAATTTCCAGGTAG-AGTTCATAATGAGAAGAACTCATTACT
1 AAATCCATCACT-TGATGGATCAGCTTTTCCA-GAAGAAGTTCATAATAAGAAGAACTCA-T-C-
* * *
6838104 TGAAGGAGGAAGAAGAAATTAATAATGAGAAGAATTTGTTCAACCTTATGCTC
61 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6838157 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6838222 AAGGAAGAACAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
*
6838270 AAATCCATCACTTGATGGATCAGCTTTTCAAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6838335 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAACTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
*
6838383 AAATCCATCACTTGATGGATCGGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
* ** *
6838448 AATGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6838496 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
* *
6838561 AAGGTATAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6838609 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6838674 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAGCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6838722 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
* ** *
6838787 AATGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6838835 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6838900 AAGGAATAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
*
6838948 AAATCCATCACTTTATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6839013 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAACTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839061 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
* ** *
6839126 AAGGAAGAAGAAGTTTATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839174 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6839239 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTT
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839287 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
6839352 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839400 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
6839465 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839513 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
*
6839578 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAACTTATGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839626 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
** *
6839691 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839739 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
** * *
6839804 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTACTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839852 AAATCCATCACTTGATGGATCAGCTTTTCCAG-AGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
** *
6839916 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
6839964 AAATCCATCACTTGATGGATCAGCTTTTCCAG-AGAAGTTCATAATAAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
* **
6840028 AAGGAAGAAGAAGTTCATAATGAGAATAGCTTGTTCAACCTT-TCGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTAT-GCTC
* *
6840076 AAATCCATCACTCGATGGATCAGCTTTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAG-AAGTTCATAATAAGAAGAACTCATCTGAA
6840140 GAAGGAAGAAGAAGTTCATAATGAGAAGAA
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAA
6840170 CTCATCTGAA
Statistics
Matches: 2036, Mismatches: 82, Indels: 22
0.95 0.04 0.01
Matches are distributed among these distances:
111 1 0.00
112 222 0.11
113 1713 0.84
114 3 0.00
115 7 0.00
116 88 0.04
117 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (113 bp):
AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTATGCTC
Found at i:6840166 original size:40 final size:39
Alignment explanation
Indices: 6840111--6840242 Score: 211
Period size: 39 Copynumber: 3.5 Consensus size: 39
6840101 TTTCCAGAGA
6840111 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAG
6840151 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
*
6840190 AATTTCATAATGAGAAGAACTCATCTG-A-AAGAAG-A-
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
6840225 AA-TTCATAATGAGAAGAA
1 AAGTTCATAATGAGAAGAA
6840243 TTTGTTCAAC
Statistics
Matches: 91, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
34 16 0.18
35 2 0.02
36 1 0.01
37 6 0.07
38 1 0.01
39 33 0.36
40 32 0.35
ACGTcount: A:0.49, C:0.10, G:0.21, T:0.20
Consensus pattern (39 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
Found at i:6840296 original size:185 final size:188
Alignment explanation
Indices: 6839996--6840349 Score: 497
Period size: 185 Copynumber: 1.9 Consensus size: 188
6839986 GCTTTTCCAG
* *
6839996 AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAGCTTG
1 AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
* * * * *
6840061 TTCAACCTTTCGCTCAAATCCATCACTCGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGA
66 TTCAACCTTTCGCTCAAATCCATCACTCAATGGATCAACCTTTACAGAGAAAATTCATAATGAGA
*
6840126 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGA
131 AGAACTCATCTGAAGAA-G-AG-A-AAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAGA
* * *
6840188 AGAATTTCATAATGAGAAGAACTCATCTG-A-AA-GAAG-A-AA-TTCATAATGAGAAGAATTTG
1 AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
* * *
6840247 TTCAACCTTT-GTTCAAATTCATCACTTAATGGATCAACCTTTACAGAGAAAATTCATAATGAGA
66 TTCAACCTTTCGCTCAAATCCATCACTCAATGGATCAACCTTTACAGAGAAAATTCATAATGAGA
6840311 AGAACTCATCTGAAGAAGAGAAAGTTCATAATAAGAAGA
131 AGAACTCATCTGAAGAAGAGAAAGTTCATAATAAGAAGA
6840350 GCTTATTCAA
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
181 17 0.11
182 1 0.01
183 2 0.01
184 1 0.01
185 63 0.43
186 27 0.18
187 2 0.01
188 1 0.01
189 4 0.03
190 2 0.01
191 1 0.01
192 27 0.18
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (188 bp):
AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
TTCAACCTTTCGCTCAAATCCATCACTCAATGGATCAACCTTTACAGAGAAAATTCATAATGAGA
AGAACTCATCTGAAGAAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAGA
Found at i:6840655 original size:27 final size:26
Alignment explanation
Indices: 6840592--6840656 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 26
6840582 CATTTTAATG
*
6840592 TTATTTATATAATAATTATTATTATAA
1 TTATTTA-ATAATAATTATTAATATAA
*
6840619 TTATAATAATAATAATTATTAATATATA
1 TTAT-TTAATAATAATTATTAATATA-A
6840647 TTATTTAATA
1 TTATTTAATA
6840657 TTACAAAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 26 0.79
28 7 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TTATTTAATAATAATTATTAATATAA
Found at i:6845852 original size:13 final size:13
Alignment explanation
Indices: 6845834--6845860 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6845824 ATATTTTTTT
6845834 TCTTTTGGTTATA
1 TCTTTTGGTTATA
6845847 TCTTTTGGTTATA
1 TCTTTTGGTTATA
6845860 T
1 T
6845861 AAAGTTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (13 bp):
TCTTTTGGTTATA
Found at i:6845868 original size:15 final size:15
Alignment explanation
Indices: 6845850--6845880 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
6845840 GGTTATATCT
6845850 TTTGGTTATATAAAG
1 TTTGGTTATATAAAG
6845865 TTTGGTTATATAAAG
1 TTTGGTTATATAAAG
6845880 T
1 T
6845881 CTTAGTCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.48
Consensus pattern (15 bp):
TTTGGTTATATAAAG
Found at i:6846005 original size:38 final size:38
Alignment explanation
Indices: 6845960--6846040 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
6845950 ATTTAGAGTC
6845960 AAAATATATCTAAGATTTAATTAAAATTTAGCTCACAA
1 AAAATATATCTAAGATTTAATTAAAATTTAGCTCACAA
*
6845998 TAAATATATCTAAGATTTAATTAAAATTTAGCTCACAA
1 AAAATATATCTAAGATTTAATTAAAATTTAGCTCACAA
6846036 AAAAT
1 AAAAT
6846041 GACGACCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.35
Consensus pattern (38 bp):
AAAATATATCTAAGATTTAATTAAAATTTAGCTCACAA
Found at i:6848671 original size:20 final size:20
Alignment explanation
Indices: 6848646--6848738 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
6848636 TTTTCCCAAT
6848646 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
6848666 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
6848686 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
6848707 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
6848728 TCGCAATGCGA
1 TCGCAATGCGA
6848739 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:6848688 original size:41 final size:41
Alignment explanation
Indices: 6848643--6848738 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
6848633 CGATTTTCCC
6848643 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
6848684 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
6848725 AAATCGCAATGCGA
1 AATTCGCAATGCGA
6848739 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:6848692 original size:21 final size:20
Alignment explanation
Indices: 6848646--6848738 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
6848636 TTTTCCCAAT
*
6848646 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
6848666 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
6848686 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
6848707 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
6848728 TCGCAATGCGA
1 TCGCAATGCGA
6848739 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:6848751 original size:41 final size:41
Alignment explanation
Indices: 6848665--6848799 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
6848655 GAATAAGTAA
* * *
6848665 ATCGCAACGCGAATTGGGAAATTCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
6848706 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
6848747 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
6848788 TTCGCAACGCGA
1 ATCGCAACGCGA
6848800 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:6848752 original size:20 final size:20
Alignment explanation
Indices: 6848727--6848821 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
6848717 AATTGGGAAA
*
6848727 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
6848747 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
6848768 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
6848788 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
6848808 TTCGCAACGCGATA
1 ATCGCAACGCGATA
6848822 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:6849037 original size:22 final size:22
Alignment explanation
Indices: 6849009--6849052 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6848999 CACTCTCTCA
6849009 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
6849031 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
6849053 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:6849340 original size:20 final size:20
Alignment explanation
Indices: 6849315--6849352 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6849305 CGATTCTCTC
6849315 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
6849335 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
6849353 AGAAAACTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:6850704 original size:17 final size:18
Alignment explanation
Indices: 6850661--6850704 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6850651 TCCACTTCGG
*
6850661 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCGACCA
* *
6850679 GAGCTATCACCTC-ACTA
1 GAGCCATCACCTCGACCA
6850696 GAGCCATCA
1 GAGCCATCA
6850705 TCTGATCGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.27, C:0.41, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCGACCA
Found at i:6851226 original size:19 final size:20
Alignment explanation
Indices: 6851172--6851238 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
6851162 TAGTTTACTT
* *
6851172 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
6851192 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
6851212 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
6851231 TCGCAACG
1 TCGCAACG
6851239 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:6851246 original size:14 final size:14
Alignment explanation
Indices: 6851227--6851284 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6851217 ATGCGAAATG
6851227 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
6851241 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
6851257 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
6851273 AAAATCGCAACG
1 AAAATCGCAACG
6851285 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:6851269 original size:32 final size:33
Alignment explanation
Indices: 6851211--6851289 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
6851201 GGAAATGGCT
*
6851211 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6851244 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6851276 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
6851290 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:6851318 original size:19 final size:19
Alignment explanation
Indices: 6851296--6851449 Score: 105
Period size: 19 Copynumber: 8.6 Consensus size: 19
6851286 GAAACACAAA
*
6851296 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
6851315 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
6851331 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
* *
6851347 TCACGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
6851363 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
6851380 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
6851399 TCCGCGTTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
6851419 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
6851439 TCGTGTTGCGA
1 TCGCGTTGCGA
6851450 AAGTAAACTA
Statistics
Matches: 109, Mismatches: 15, Indels: 21
0.75 0.10 0.14
Matches are distributed among these distances:
14 19 0.17
15 3 0.03
16 6 0.06
17 2 0.02
18 14 0.13
19 36 0.33
20 29 0.27
ACGTcount: A:0.14, C:0.20, G:0.23, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:6851337 original size:14 final size:14
Alignment explanation
Indices: 6851318--6851375 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6851308 TTTCATTTCG
6851318 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
6851332 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
6851348 CACGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
6851364 CGTTGCGATTTT
1 CGTTGCGATTTT
6851376 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:6851348 original size:32 final size:33
Alignment explanation
Indices: 6851301--6851391 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
6851291 ACAAATCGCA
6851301 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
6851334 TTGCGA-TTTCATTTCACGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
6851366 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
6851392 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 31 0.57
33 23 0.43
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:6851410 original size:20 final size:19
Alignment explanation
Indices: 6851376--6851430 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
6851366 TTGCGATTTT
*
6851376 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
6851395 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
6851415 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
6851431 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:6853323 original size:14 final size:14
Alignment explanation
Indices: 6853291--6853324 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6853281 GATTGTTTAA
6853291 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
* *
6853305 ATGATTTGTAAATG
1 TTGATTTGTAAAAG
6853319 TTGATT
1 TTGATT
6853325 GTTTAATTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:6853465 original size:19 final size:19
Alignment explanation
Indices: 6853443--6853509 Score: 83
Period size: 18 Copynumber: 3.8 Consensus size: 19
6853433 ATCGCAACGA
*
6853443 GAAAATTGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
6853462 G-AAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
6853480 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
6853494 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
6853510 TTTTCATTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
14 11 0.26
15 1 0.02
16 2 0.05
17 2 0.05
18 17 0.40
19 10 0.23
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.15
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:6853585 original size:20 final size:20
Alignment explanation
Indices: 6853535--6853585 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
6853525 GCGATATTCT
* *
6853535 CGTTGCGATAACCATTTTCG
1 CGTTGCGATAGCCATTTTCA
6853555 CGTTGCGATAGCCATTTTCA
1 CGTTGCGATAGCCATTTTCA
6853575 CGTTGCGATAG
1 CGTTGCGATAG
6853586 TCAAATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGCCATTTTCA
Found at i:6854698 original size:24 final size:24
Alignment explanation
Indices: 6854642--6854700 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
6854632 AGTCAGTATT
* *
6854642 CGAAATTTGATCTTGGTCAATACC
1 CGAAATTTGATATTGGTCAATACA
* *
6854666 CGGACTTTGATATTGGTCAATACA
1 CGAAATTTGATATTGGTCAATACA
*
6854690 CGAATTTTGAT
1 CGAAATTTGAT
6854701 GATGTTTCAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (24 bp):
CGAAATTTGATATTGGTCAATACA
Found at i:6854892 original size:12 final size:12
Alignment explanation
Indices: 6854875--6854899 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6854865 ATATAATCCT
6854875 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6854887 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6854899 G
1 G
6854900 CCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:6857214 original size:19 final size:19
Alignment explanation
Indices: 6857192--6857250 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
6857182 GGAAATTACT
6857192 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6857211 ATCGCAAT--G--A-GAGA
1 ATCGCAATGCGAAATGAAA
6857225 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6857244 ATCGCAA
1 ATCGCAA
6857251 CGAGGGAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 11 0.33
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 18 0.55
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:6857234 original size:33 final size:33
Alignment explanation
Indices: 6857192--6857270 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
6857182 GGAAATTACT
*
6857192 ATCGCAATGCGAAATGAAAATCGCAATGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
6857225 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
6857258 ATCGCAACGCGAA
1 ATCGCAATGCGAA
6857271 TTTAATTTCG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.43, C:0.19, G:0.25, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6857288 original size:19 final size:20
Alignment explanation
Indices: 6857266--6857308 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6857256 GAATCGCAAC
6857266 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
6857285 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
6857305 GCGA
1 GCGA
6857309 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:6857293 original size:14 final size:14
Alignment explanation
Indices: 6857294--6857327 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6857284 TGCGATTTTC
6857294 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
6857308 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
6857322 ATTTTC
1 ATTTTC
6857328 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:6857468 original size:14 final size:14
Alignment explanation
Indices: 6857449--6857485 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
6857439 CATCAATTAA
6857449 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
6857463 ACAAATCACCTTTT
1 ACAAATCAACTTTT
6857477 ACAAATCAA
1 ACAAATCAA
6857486 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:6858868 original size:21 final size:20
Alignment explanation
Indices: 6858844--6858904 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
6858834 GTGAATCGGG
*
6858844 CTCTTGAATGGTGAGAGGGAC
1 CTCTTGAACGGTGAGAGGG-C
* * *
6858865 CTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGAGAG-GGC
*
6858886 CTCTTGAACGGTGGGAGGG
1 CTCTTGAACGGTGAGAGGG
6858905 GACTCTCGAG
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.23
Consensus pattern (20 bp):
CTCTTGAACGGTGAGAGGGC
Found at i:6858929 original size:42 final size:42
Alignment explanation
Indices: 6858883--6858966 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
6858873 CGATGACAGT
* * *
6858883 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
6858925 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
6858967 CGAGTCGGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:6860997 original size:20 final size:19
Alignment explanation
Indices: 6860966--6861145 Score: 110
Period size: 19 Copynumber: 9.8 Consensus size: 19
6860956 TCTTTTGGTT
6860966 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
6860985 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
6861006 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
6861025 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
* * *
6861039 GAAATG--ACTAGC-GCGA
1 GAAATGAAAATCGCAACGA
** * *
6861055 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
* *
6861072 GAAATTAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGA
* *
6861092 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
6861111 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
6861130 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
6861146 TGCGATTTTG
Statistics
Matches: 128, Mismatches: 22, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
14 11 0.09
15 1 0.01
16 8 0.06
17 8 0.06
18 1 0.01
19 49 0.38
20 48 0.38
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:6861083 original size:19 final size:19
Alignment explanation
Indices: 6861061--6861150 Score: 144
Period size: 19 Copynumber: 4.7 Consensus size: 19
6861051 GCGACCAGAC
*
6861061 AATCGCAACGCGAAATTAA
1 AATCGCAACGCGAAATGAA
*
6861080 AATCGCAACCGCGAAATTAA
1 AATCGCAA-CGCGAAATGAA
6861100 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
6861119 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6861138 AATCGCAATGCGA
1 AATCGCAACGCGA
6861151 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 49 0.72
20 19 0.28
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:6861104 original size:39 final size:38
Alignment explanation
Indices: 6860966--6861150 Score: 156
Period size: 33 Copynumber: 5.1 Consensus size: 38
6860956 TCTTTTGGTT
* *
6860966 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** *
6861005 GGAAATGACTATCGCAA--CG--A-GAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
** * * *
6861039 GAAATGACTAGCGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
* *
6861072 GAAATTAAAATCGCAACCGCGAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAA-CGCGAAATGAAAATCGCAACGC
*
6861111 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
6861149 GA
1 GA
6861151 TTTTGGTTTC
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
33 39 0.32
34 16 0.13
35 2 0.02
38 24 0.20
39 27 0.22
40 14 0.11
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:6861179 original size:19 final size:19
Alignment explanation
Indices: 6861146--6861216 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
6861136 AAAATCGCAA
**
6861146 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTCATTTCGCGT
*
6861165 TGCGATTTTTATTTCGCGT
1 TGCGATTTTCATTTCGCGT
**
6861184 TGCGATAGTCATTTCCGCGT
1 TGCGATTTTCATTT-CGCGT
*
6861204 TGCGATTCTCATT
1 TGCGATTTTCATT
6861217 CTCGAAACTA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.45
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCGT
Found at i:6861816 original size:20 final size:20
Alignment explanation
Indices: 6861731--6861824 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
6861721 CGCTAAGTAA
*
6861731 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* * *
6861751 ATCGTGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
6861771 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
6861792 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
6861812 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
6861825 TTTCCCAATT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 45 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:6861843 original size:41 final size:41
Alignment explanation
Indices: 6861813--6861908 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
6861803 ATAGTCAGTA
* * *
6861813 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
* *
6861854 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
6861895 TCGCATTGCGAATT
1 TCGCATTGCGAATT
6861909 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:6861857 original size:20 final size:20
Alignment explanation
Indices: 6861813--6861905 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
6861803 ATAGTCAGTA
* **
6861813 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
6861834 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
6861854 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
6861875 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
6861895 TCGCATTGCGA
1 TCGCATTGCGA
6861906 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:6864635 original size:157 final size:156
Alignment explanation
Indices: 6863981--6864712 Score: 800
Period size: 157 Copynumber: 4.7 Consensus size: 156
6863971 CTATAGAAAA
* * * * *
6863981 ATGCATGAATTATTACCTTGTATTTAATCTTATATTAAAAGAAAAAAATATTATAAACGTTACGT
1 ATGCATGAGTTACTATCTTATATTTTATCTTATATTAAAAG-AAAAAATATTATAAACGTTACGT
* * * *
6864046 AACGTACAATGATTGTCGCGATTATAATTGTTCTTTTAACTTATAGAAAAT-AAGTGATTATGCG
65 AACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAATAAACTG-TTATGCG
* * *
6864110 TAAATCTATAACCATATGTAAAAATAAG
129 TAAATCTATAAACATATATAAAAAGAAG
* * * * * *
6864138 ATG-TTTAGATTACTATCTTATATTTTATCTTAGATT-AAA-AAGAAATATTATAAAGGTTATGT
1 ATGCATGAG-TTACTATCTTATATTTTATCTTATATTAAAAGAAAAAATATTATAAACGTTACGT
* * * ** * * *
6864200 AACGTATAATGATTGTCGCAATTATAATTGATCATGTAACTTTTAGAAAATATGCAGTTTTGCAT
65 AACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAATAAACTGTTATGCGT
* *
6864265 AAATCTA-AAATCATATATGAATAGAAG
130 AAATCTATAAA-CATATATAAAAAGAAG
** * * * *
6864292 ATTAATGAATTACT-TACGTTATATTTTATCTTATTTTAAAAG-AAAATTATTAT-AACGTTACA
1 ATGCATGAGTTACTAT-C-TTATATTTTATCTTATATTAAAAGAAAAAATATTATAAACGTTACG
* * * * *
6864354 TAAAGTACAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAA-TGGTTTTGA
64 TAACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAATAAACT-GTTATGC
* *
6864418 GTAAATTTATAACCATATATAAAAAGAAG
128 GTAAATCTATAAACATATATAAAAAGAAG
* * * ** *
6864447 ATGCATG-GATTATTACCTTATATTTTATCTTATATTAATAGAAAAAATATTATAAATATTATGT
1 ATGCATGAG-TTACTATCTTATATTTTATCTTATATTAAAAGAAAAAATATTATAAACGTTACGT
* * * * * *
6864511 AACGTGTAATAATTGTCGCGATTATAATTGTTCTTTTAACTTTTAGAAAGTAAACTGCTTAAGTG
65 AACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAATAAACTG-TTATGCG
6864576 TAAATCTATAAACATATATAAAAAGAAG
129 TAAATCTATAAACATATATAAAAAGAAG
* * *
6864604 ATGCATGAGTTACTATCTTATATTTTTTCTTATATTAAAATAAAAAATATTATAAATGTTACGTA
1 ATGCATGAGTTACTATCTTATATTTTATCTTATATTAAAAGAAAAAATATTATAAACGTTACGTA
*
6864669 ACGTATAATGATTATCGCGATTATAATTGTTCTTGTAACTTTTA
66 ACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTA
6864713 TCTGCGTAAA
Statistics
Matches: 471, Mismatches: 87, Indels: 34
0.80 0.15 0.06
Matches are distributed among these distances:
153 3 0.01
154 120 0.25
155 120 0.25
156 75 0.16
157 152 0.32
158 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (156 bp):
ATGCATGAGTTACTATCTTATATTTTATCTTATATTAAAAGAAAAAATATTATAAACGTTACGTA
ACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAATAAACTGTTATGCGTA
AATCTATAAACATATATAAAAAGAAG
Found at i:6864978 original size:273 final size:275
Alignment explanation
Indices: 6864475--6864985 Score: 697
Period size: 273 Copynumber: 1.9 Consensus size: 275
6864465 TATATTTTAT
* * * * * *
6864475 CTTATATTAATAGAAAAAATATTATAAATATTATGTAACGTGTAATAATTGTCGCGATTATAATT
1 CTTATATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATAATTGTCACAATTATAATT
* * **
6864540 GTTCTTTTAACTTTTAGAAAGTAAACTGCTTAAGTGTAAATCTATAAACATATATAAAAAGAAGA
66 GTTCTTTTAACTTTTAGAAAGTAAACTGATGAAGCATAAATCTATAAACATATATAAAAAGAAGA
* * * * * *
6864605 TGCATGAGTTACTATCTTATATTTTTTCTTATATTAAAATAAAAAATATTATAAATGTTACGTAA
131 TGCATGAGTTACTATCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTACGTAA
* *
6864670 CGTATAATGATTATCGCGATTATAATTGTTCTTGTAACTTTTATCTGCGTAAATCTATAAAAAGA
196 CGTATAATGATTATCGCAATTATAATTGATCTTGTAACTTTTATCTGCGTAAATCTATAAAAAGA
6864735 TGCATGAATTACTAC
261 TGCATGAATTACTAC
*
6864750 CTTA-ATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATGATTGTCACAATTATAATT
1 CTTATATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATAATTGTCACAATTATAATT
* ** * ** *
6864814 GTT-TATTTAACTTTTAGAAAGT-AAGTGATGCCGCATAAATCTATAACCATATATAAAGTGAGG
66 GTTCT-TTTAACTTTTAGAAAGTAAACTGATGAAGCATAAATCTATAAACATATATAAAAAGAAG
** *
6864877 ATGTTTG-GATTACTATCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTATGT
130 ATGCATGAG-TTACTATCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTACGT
* *
6864941 AATGTATAATGATTGTCGCAATTATAATTGATCTTGTAACTTTTA
194 AACGTATAATGATTATCGCAATTATAATTGATCTTGTAACTTTTA
6864986 GAAAGTAAAA
Statistics
Matches: 203, Mismatches: 31, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
272 1 0.00
273 125 0.62
274 73 0.36
275 4 0.02
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (275 bp):
CTTATATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATAATTGTCACAATTATAATT
GTTCTTTTAACTTTTAGAAAGTAAACTGATGAAGCATAAATCTATAAACATATATAAAAAGAAGA
TGCATGAGTTACTATCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTACGTAA
CGTATAATGATTATCGCAATTATAATTGATCTTGTAACTTTTATCTGCGTAAATCTATAAAAAGA
TGCATGAATTACTAC
Found at i:6865045 original size:156 final size:156
Alignment explanation
Indices: 6864750--6865766 Score: 940
Period size: 156 Copynumber: 6.6 Consensus size: 156
6864740 GAATTACTAC
* *
6864750 CTTA-ATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATGATTGTCACAATTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
* ** * * ** *
6864814 G-TTTATTTAACTTTTAGAAAGT-AAGTGATGCCGCATAAATCTATAACCATATATAAAGTGAGG
66 GATCT-TTTAACTTTTAGAAAGTAAAAAG-TTCTGCATAAATCTATAACCATATATAAAAAGAAG
* * *
6864877 ATGTTTGGATTACTATCATATATTTTAT
129 ATGTATGGATTACTACCTTATATTTTAT
* * *
6864905 CTTAGATTAAAAGAAAAAAAATTATAAACGTTATGTAATGTATAATGATTGTCGCAATTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
* * * * *
6864970 GATCTTGTAACTTTTAGAAAGTAAAAAGTTATACATAAATCTATAATCATATATAGAAAGAAGAT
66 GATCTTTTAACTTTTAGAAAGTAAAAAGTTCTGCATAAATCTATAACCATATATAAAAAGAAGAT
* *
6865035 GAATGAATTACTTACCTTATATTTTAT
131 GTATGGATTAC-TACCTTATATTTTAT
** * ** **
6865062 CTTATTTTAAATG-AAAAATATTATAAACACTACGTAATTTATAATGATTGTCG-AGATTATAAT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCA-ATTATAAT
* ** * * *
6865125 T-ATTATTTTAACTTTTAGAAAGT-AAGTGATTCTTCGTAAATCTTTAACC--ATAT------AA
65 TGA-TCTTTTAACTTTTAGAAAGTAAAAAG-TTCTGCATAAATCTATAACCATATATAAAAAGAA
* *
6865180 GATGTTTGGATTACTATCTTATATTTTAT
128 GATGTATGGATTACTACCTTATATTTTAT
* * * * *
6865209 CTTAGATTAAAAGAAAAAAAATATTATAAACGTTATGTAATGTATACTGATTATCACAATTATAA
1 CTTAGATTAAAAG--AAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAA
* ** *** *
6865274 GTGATCTTGCAACTTTTAGAAAGTAAGTTGTTCTGCATAAATCTATAACCATATATAAAAATAAG
64 TTGATCTTTTAACTTTTAGAAAGTAAAAAGTTCTGCATAAATCTATAACCATATATAAAAAGAAG
*
6865339 ATGAATGGATTACTTACCTTATATTTTAT
129 ATGTATGGATTAC-TACCTTATATTTTAT
** * ** *
6865368 CTTATTTTAAAA-TAAAAATATTATAAAAATTACGTAACGTATAAT-ATTGTCGTAATTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
* * * ** * * * *
6865431 GTTCTTTTAACTTTTAAAAATTAAACGGTTTTGCGTAAATCTAAAACCATATATAAAAAGAATAT
66 GATCTTTTAACTTTTAGAAAGTAAAAAGTTCTGCATAAATCTATAACCATATATAAAAAGAAGAT
* ** * * *
6865496 GCATAAATAACTTTCTTTATATTTTAT
131 GTATGGATTAC-TACCTTATATTTTAT
* * * * ** * * *
6865523 CTTCGACTAAAAGAAAAATTATTATAAATGTTACACAACGTATAATGATTATCACACTTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
* * ** * *
6865588 GTTCTTTTAAC-TTTATGAAAGCAAGCAGTTCT-CTGTAAATCTATAACCATATACAAAAAGAAG
66 GATCTTTTAACTTTTA-GAAAGTAAAAAGTTCTGC-ATAAATCTATAACCATATATAAAAAGAAG
6865651 ATGTATGGATTACTACCTTATATTTTAT
129 ATGTATGGATTACTACCTTATATTTTAT
** * * *
6865679 CTTAGATTAATTGAAATATTATTATAAACGTTACGTAACGTATAATGATTTTCGCAATTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
*
6865744 -ATTCTTTTAACTTTTATAAAGTA
66 GA-TCTTTTAACTTTTAGAAAGTA
6865767 CTCGTAACGT
Statistics
Matches: 694, Mismatches: 140, Indels: 55
0.78 0.16 0.06
Matches are distributed among these distances:
147 24 0.03
148 13 0.02
150 75 0.11
151 5 0.01
152 4 0.01
154 4 0.01
155 104 0.15
156 325 0.47
157 102 0.15
158 14 0.02
159 24 0.03
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (156 bp):
CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTGTCGCAATTATAATT
GATCTTTTAACTTTTAGAAAGTAAAAAGTTCTGCATAAATCTATAACCATATATAAAAAGAAGAT
GTATGGATTACTACCTTATATTTTAT
Found at i:6865628 original size:462 final size:461
Alignment explanation
Indices: 6864750--6865741 Score: 1106
Period size: 462 Copynumber: 2.1 Consensus size: 461
6864740 GAATTACTAC
* * *
6864750 CTTA-ATTAAAAGAAAAAATATTATAAACATTACGTAACGTATAATGATTGTCACAATTATAATT
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTATCACAATTATAAGT
* ** * *
6864814 GTTTATTTAACTTTTAGAAAGTAAGTGATGCCGCATAAATCTATAACCATATATAAAGTGAGGAT
66 GTCTATGCAACTTTTAGAAAGTAAGTGATGCCGCATAAATCTATAACCATATATAAAATGAAGAT
** * ** * *
6864879 GTTTGGATTACTATCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTATGTAAT
131 GAATGGATTACTACCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAAAATTACGTAAC
*
6864944 GTATAATGATTGTCGCAATTATAATTGATCTTGTAACTTTTAGAAAGTAAAAAGTTATACATAAA
196 GTATAATGATTGTCGCAATTATAATTGATCTTGTAACTTTTAAAAAGTAAAAAGTTATACATAAA
* * * * * *** *
6865009 TCTATAATCATATATAGAAAGAAGATGAATGAATTACTTACCTTATATTTTATCTTATTTTAAAT
261 TCTAAAACCATATATAAAAAGAAGATGAATAAATAACTTACCTTATATTTTATCTTAGACTAAAA
** ** * *
6865074 GAAAAATATTATAAACACTACGTAATTTATAATGATTGTCGAGATTATAATTATTATTTTAACTT
326 GAAAAATATTATAAACACTACACAACGTATAATGATTATCGACATTATAATTATTATTTTAACTT
* * * * *
6865139 TTAGAAAGTAAGTGATTCTTCGTAAATCTTTAACCATAT-AAGATGTTTGGATTACTATCTTATA
391 TTAGAAAGCAAGAGATTCTTCGTAAATCTATAACCATATAAAGATGTATGGATTACTACCTTATA
6865203 TTTTAT
456 TTTTAT
* * *
6865209 CTTAGATTAAAAGAAAAAAAATATTATAAACGTTATGTAATGTATACTGATTATCACAATTATAA
1 CTTAGATTAAAAG--AAAAAATATTATAAACGTTACGTAACGTATAATGATTATCACAATTATAA
* *
6865274 GTGATCT-TGCAACTTTTAGAAAGTAAGTTG-TTCTGCATAAATCTATAACCATATATAAAAAT-
64 GTG-TCTATGCAACTTTTAGAAAGTAAG-TGATGCCGCATAAATCTATAACCATATAT-AAAATG
* ** * *
6865336 AAGATGAATGGATTACTTACCTTATATTTTATCTTATTTTAAAA-TAAAAATATTATAAAAATTA
126 AAGATGAATGGATTAC-TACCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAAAATTA
* * * * ** * *
6865400 CGTAACGTATAAT-ATTGTCGTAATTATAATTGTTCTTTTAACTTTTAAAAATTAAACGGTTTTG
190 CGTAACGTATAATGATTGTCGCAATTATAATTGATCTTGTAACTTTTAAAAAGTAAAAAGTTATA
* * * * * *
6865464 CGTAAATCTAAAACCATATATAAAAAGAATATGCATAAATAACTTTCTTTATATTTTATCTTCGA
255 CATAAATCTAAAACCATATATAAAAAGAAGATGAATAAATAACTTACCTTATATTTTATCTTAGA
*** * *
6865529 CTAAAAGAAAAATTATTATAAATGTTACACAACGTATAATGATTATC-ACACTTATAATTGTTCT
320 CTAAAAGAAAAA-TATTATAAACACTACACAACGTATAATGATTATCGACA-TTATAATTATTAT
6865593 TTTAAC-TTTATGAAAGCAAGCAG-TTC-TCTGTAAATCTATAACCATATACAAAAAGAAGATGT
383 TTTAACTTTTA-GAAAGCAAG-AGATTCTTC-GTAAATCTATAACCATAT------A-AAGATGT
6865655 ATGGATTACTACCTTATATTTTAT
438 ATGGATTACTACCTTATATTTTAT
** * * * *
6865679 CTTAGATTAATTGAAATATTATTATAAACGTTACGTAACGTATAATGATTTTCGCAATTATAA
1 CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTATCACAATTATAA
6865742 TTATTCTTTT
Statistics
Matches: 439, Mismatches: 74, Indels: 31
0.81 0.14 0.06
Matches are distributed among these distances:
459 4 0.01
460 8 0.02
461 112 0.26
462 200 0.46
463 32 0.07
468 43 0.10
470 40 0.09
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (461 bp):
CTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAACGTATAATGATTATCACAATTATAAGT
GTCTATGCAACTTTTAGAAAGTAAGTGATGCCGCATAAATCTATAACCATATATAAAATGAAGAT
GAATGGATTACTACCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAAAATTACGTAAC
GTATAATGATTGTCGCAATTATAATTGATCTTGTAACTTTTAAAAAGTAAAAAGTTATACATAAA
TCTAAAACCATATATAAAAAGAAGATGAATAAATAACTTACCTTATATTTTATCTTAGACTAAAA
GAAAAATATTATAAACACTACACAACGTATAATGATTATCGACATTATAATTATTATTTTAACTT
TTAGAAAGCAAGAGATTCTTCGTAAATCTATAACCATATAAAGATGTATGGATTACTACCTTATA
TTTTAT
Found at i:6865704 original size:312 final size:308
Alignment explanation
Indices: 6864763--6865766 Score: 1150
Period size: 312 Copynumber: 3.2 Consensus size: 308
6864753 AATTAAAAGA
* *
6864763 AAAAATATTATAAACATTACGTAACGTATAATGATTGTCACAATTATAATTGTT-TATTTAACTT
1 AAAAATATTATAAACATTACGTAACGTATAATGATTGTCGCAATTATAATTATTCT-TTTAACTT
*** * * * **
6864827 TTAGAAAGTAAGTGATGCCGCATAAATCTATAACCATATATAAAGTGAGGATGTTTGGATTACTA
65 TTAGAAAGTAAGTGATTTTGCGTAAATCTATAACCATATATAAAATGA-TATGCAT--A-TACTA
* * *
6864892 TCATATATTTTATCTTAGATTAAAAGAAAAAAAATTATAAACGTTATGTAATGTATAATGATTGT
126 TCTTATATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTATGTAATGTATAATGATTAT
* * * *
6864957 CGCAATTATAATTGATCTTGTAACTTTTAGAAAGTAAAAAGTTATACATAAATCTATAATCATAT
191 CACAATTATAATTGATCTTGTAACTTTTAGAAAGTAAGAAGTTCTACATAAATCTATAACCATAT
* *
6865022 ATAGAAAGAAGATGAATGAATTACTTACCTTATATTTTATCTTATTTTAAATG
256 ATAAAAAGAAGATGAATGGATTACTTACCTTATATTTTATCTTATTTTAAATG
* ** *
6865075 AAAAATATTATAAACACTACGTAATTTATAATGATTGTCG-AGATTATAATTATTATTTTAACTT
1 AAAAATATTATAAACATTACGTAACGTATAATGATTGTCGCA-ATTATAATTATTCTTTTAACTT
* * * *
6865139 TTAGAAAGTAAGTGATTCTT-CGTAAATCTTTAACC--ATATAAGATG-TTTGGAT-TACTATCT
65 TTAGAAAGTAAGTGATT-TTGCGTAAATCTATAACCATATATAAAATGATATGCATATACTATCT
*
6865199 TATATTTTATCTTAGATTAAAAGAAAAAAAATATTATAAACGTTATGTAATGTATACTGATTATC
129 TATATTTTATCTTAGATTAAAAG--AAAAAATATTATAAACGTTATGTAATGTATAATGATTATC
* * ** *
6865264 ACAATTATAAGTGATCTTGCAACTTTTAGAAAGTAAGTTGTTCTGCATAAATCTATAACCATATA
192 ACAATTATAATTGATCTTGTAACTTTTAGAAAGTAAGAAGTTCTACATAAATCTATAACCATATA
*
6865329 TAAAAATAAGATGAATGGATTACTTACCTTATATTTTATCTTATTTTAAAAT-
257 TAAAAAGAAGATGAATGGATTACTTACCTTATATTTTATCTTATTTT-AAATG
* * *
6865381 AAAAATATTATAAAAATTACGTAACGTATAAT-ATTGTCGTAATTATAATTGTTCTTTTAACTTT
1 AAAAATATTATAAACATTACGTAACGTATAATGATTGTCGCAATTATAATTATTCTTTTAACTTT
* * ** * * * *
6865445 TAAAAATTAAACGGTTTTGCGTAAATCTAAAACCATATATAAAAAGAATATGCATAAATAACTTT
66 TAGAAAGTAAGTGATTTTGCGTAAATCTATAACCATATATAAAATG-ATATGCAT--AT-ACTAT
* * * * *** *
6865510 CTTTATATTTTATCTTCGACTAAAAGAAAAATTATTATAAATGTTACACAACGTATAATGATTAT
127 C-TTATATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTATGTAATGTATAATGATTAT
* * * * * *
6865575 CACACTTATAATTGTTCTTTTAAC-TTTATGAAAGCAAGCAGTTCT-CTGTAAATCTATAACCAT
191 CACAATTATAATTGATCTTGTAACTTTTA-GAAAGTAAGAAGTTCTAC-ATAAATCTATAACCAT
* * ** *
6865638 ATACAAAAAGAAGATGTATGGATTAC-TACCTTATATTTTATCTTAGATTAATTG
254 ATATAAAAAGAAGATGAATGGATTACTTACCTTATATTTTATCTTATTTTAAATG
* * *
6865692 AAATATTATTATAAACGTTACGTAACGTATAATGATTTTCGCAATTATAATTATTCTTTTAACTT
1 AAA-AATATTATAAACATTACGTAACGTATAATGATTGTCGCAATTATAATTATTCTTTTAACTT
*
6865757 TTATAAAGTA
65 TTAGAAAGTA
6865767 CTCGTAACGT
Statistics
Matches: 588, Mismatches: 82, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
304 32 0.05
305 52 0.09
306 166 0.28
307 12 0.02
308 3 0.01
309 5 0.01
310 11 0.02
311 30 0.05
312 213 0.36
313 42 0.07
314 22 0.04
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (308 bp):
AAAAATATTATAAACATTACGTAACGTATAATGATTGTCGCAATTATAATTATTCTTTTAACTTT
TAGAAAGTAAGTGATTTTGCGTAAATCTATAACCATATATAAAATGATATGCATATACTATCTTA
TATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTATGTAATGTATAATGATTATCACAA
TTATAATTGATCTTGTAACTTTTAGAAAGTAAGAAGTTCTACATAAATCTATAACCATATATAAA
AAGAAGATGAATGGATTACTTACCTTATATTTTATCTTATTTTAAATG
Found at i:6865773 original size:57 final size:58
Alignment explanation
Indices: 6865712--6865824 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 58
6865702 ATAAACGTTA
* * *
6865712 CGTAACGTATAATGATTTTCGCAATTATAATTATTCTTTTAAC-TTTTATAAAGTACT
1 CGTAACGTATAATAATTATCGCAATTATAATTATTCTTTTAACTTTTTAGAAAGTACT
* *
6865769 CGTAACGTATAATAATTATCGCAATTTTAATTGTTCTTTTAACTTTTTAGAAAGTA
1 CGTAACGTATAATAATTATCGCAATTATAATTATTCTTTTAACTTTTTAGAAAGTA
6865825 AGCAGTTCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 39 0.78
58 11 0.22
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (58 bp):
CGTAACGTATAATAATTATCGCAATTATAATTATTCTTTTAACTTTTTAGAAAGTACT
Found at i:6865939 original size:214 final size:213
Alignment explanation
Indices: 6865559--6865973 Score: 605
Period size: 214 Copynumber: 1.9 Consensus size: 213
6865549 AATGTTACAC
* *
6865559 AACGTATAATGATTATCACACTTATAATTGTTCTTTTAACTTTATGAAAGCAAGCAGTTCTCTGT
1 AACGTATAATAATTATCACAATTATAATTGTTCTTTTAACTTTATGAAAGCAAGCAGTTCTCTGT
* * *
6865624 AAATCTATAACCATATACAAAAAGAAGATGTATGGATTACTACCTTATATTTTATCTTAGATTAA
66 AAATCTATAACCATATACAAAAAGAAGATGCATGAATTACTACATTATATTTTATCTTAGATTAA
** * * * * * * *
6865689 TTGAAATATTATTATAAACGTTACGTAACGTATAATGATTTTCGCAATTATAATTATTCTTTTAA
131 AAGAAAAAATATCATAAACATTACGTAACATATAATGATTGTCGCAATTATAATTATTCTTATAA
6865754 CTTTTATAAAGTACTCGT
196 CTTTTATAAAGTACTCGT
* * * *
6865772 AACGTATAATAATTATCGCAATTTTAATTGTTCTTTTAACTTTTTAGAAAGTAAGCAGTTCTCTG
1 AACGTATAATAATTATCACAATTATAATTGTTCTTTTAACTTTAT-GAAAGCAAGCAGTTCTCTG
* * *
6865837 TAAATCTATAACCATATATAAAAAGAAGATGCATGAATTGCTATATTATATTTTATCTTAGATTA
65 TAAATCTATAACCATATACAAAAAGAAGATGCATGAATTACTACATTATATTTTATCTTAGATTA
* * *
6865902 AAAGAAAAAATATCATAAACATTATGTAACATATAATGATTGTCGCGATTATAATTGTTCTTATA
130 AAAGAAAAAATATCATAAACATTACGTAACATATAATGATTGTCGCAATTATAATTATTCTTATA
6865967 ACTTTTA
195 ACTTTTA
6865974 GAAATTAAGC
Statistics
Matches: 177, Mismatches: 24, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
213 40 0.23
214 137 0.77
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (213 bp):
AACGTATAATAATTATCACAATTATAATTGTTCTTTTAACTTTATGAAAGCAAGCAGTTCTCTGT
AAATCTATAACCATATACAAAAAGAAGATGCATGAATTACTACATTATATTTTATCTTAGATTAA
AAGAAAAAATATCATAAACATTACGTAACATATAATGATTGTCGCAATTATAATTATTCTTATAA
CTTTTATAAAGTACTCGT
Found at i:6866413 original size:157 final size:156
Alignment explanation
Indices: 6865769--6867902 Score: 1302
Period size: 156 Copynumber: 13.7 Consensus size: 156
6865759 ATAAAGTACT
* * * * * * *
6865769 CGTAACGTATAATAATTATCGCAATTTTAATTGTTCTTTTAACTTTTTAGAAAGTAAGCAGTTCT
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAAC-TTTTAGAAAGTAAGCGGTTCT
* **
6865834 -CTGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTGCTATATTATATTTTATCTTAG
65 GC-GTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAG
* *
6865898 ATTAAAAGAAAAAATATCATAAACATTA
129 ATTAAAAGAAAAAATATTATAAACGTTA
* * * *
6865926 TGTAACATATAATGATTGTCGCGATTATAATTGTTCTTATAACTTTTAGAAATTAAGCGGTTCTA
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
* * ** *
6865991 CGTAAATCTATAACTATATATAAAAAGAAGATGAATGAATTACTATATTTTATTTTATCTTAGAT
66 CGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGAT
* *
6866056 TAAACG-AAAAA-ATTATAAATGTTA
131 TAAAAGAAAAAATATTATAAACGTTA
* * * *
6866080 CGTAACGTATAATGATTGTAG-GAGTTATAATTGTTCTTGTAACTTTTAAAAAGTAAGCGGTTTT
1 CGTAACATATAATGATTGTCGCGA-TTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCT
*
6866144 GCGAAAATCTATAACCATATATAAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAG
65 GCGTAAATCTATAACCATATAT-AAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAG
* * *
6866209 ATTAATAG-AAAATTATTATAAATGTTA
129 ATTAAAAGAAAAAATATTATAAACGTTA
* *
6866236 TGTAACGTATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTTAGAAAGTAAGCGGTTCT
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAAC-TTTTAGAAAGTAAGCGGTTCT
* * *
6866301 GCCTAAATCTATAACCATATATAAAAAGAAGATGCATGAAATACTACCTTATATTTTATTTTAGA
65 GCGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGA
* * *
6866366 TTAAAATAAAAATTATTGTAAACGTTA
130 TTAAAAGAAAAAATATTATAAACGTTA
* * * * ** *
6866393 CGTAACATATAATGGTTGTCGAGATTATAATTGTTATTGTAACTTTTAGAAAGTAAACACTTATG
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
* * * *
6866458 TGTAAATCTATAACCATATGTAAAAAGAAGATGCATGAATTACTACCTTAAATTTTAATCTTAAA
66 CGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTT-ATCTTAGA
**
6866523 TTAAAAGAAACAAAATATTATAAATATTA
130 TTAAAAG-AA-AAAATATTATAAACGTTA
* * * * * ** * *
6866552 C-TTAC-TGTATTGATTGTCGTGATTGTAATTGTTCTTGTAACTTTTAGAAAGTAAATGATTTTG
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
* * *
6866615 CGTAAATCTACAACCATATATAAAAAGAATATGCATGAATTACTATCTTATATTTTATCTTAGAT
66 CGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGAT
*
6866680 TACAAGAAAAAATATTATAAACGTTA
131 TAAAAGAAAAAATATTATAAACGTTA
* ** * * * * *
6866706 -GATAACATATAACG-TTGTTACTATTATAATTGTTCTTTTAACTTTTAAAAAGTTAA-CAGTTT
1 CG-TAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAG-TAAGCGGTTC
* * * * * *
6866768 TGCGTAAAACTATAACTATACATAAAAAGAAGATGCATGAATTA-T---TGTAGATATGTAACGT
64 TGCGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCT-TATAT-TTTATC-T
** * * * **
6866829 CTAGA-T-ATTG---ATACA-T-TACATTTTA
126 -TAGATTAAAAGAAAAAATATTATAAACGTTA
* ** * * * * * *
6866854 C--AAGGCCT-T--TTCTTGTC-AGATGT-T--TGTGTAC--GAAAATATTACGACAG-AAG-GA
1 CGTAA--CATATAATGATTGTCGCGAT-TATAAT-TGTTCTTGTAACTTTTA-GAAAGTAAGCG-
* * * * * * * * * ** *
6866906 G---AGGGAAAAT-AAAAGGA-AATGATGAGAAGAAAGAGAAGA-G-A-AAATAACT-TTTTTTA
60 GTTCTGCGTAAATCTATA--ACCAT-AT-A-TA-AAA-AGAAGATGCATGAATTACTACCTTATA
* * * * ** * * *
6866962 TTATTAAT-TAAAACCTAAAATAATTATTAATATAAA-TTTA
118 TT-TT-ATCTTAGA-TTAAAAGAAAAAATATTATAAACGTTA
** *** * ** * ** *
6867002 TATGATTTTTTTAATTTTTGAATAATGC-A-TATAA-TG-TAATGATAATGTCTCATGTTCG-AA
1 CGT-A-ACATATAATGATTG--T--CGCGATTATAATTGTTCTTG-TAA---CT--T-TTAGAAA
** * * * ** ** * *** * *
6867062 -T-A-C-AATGTACGTAGAAATATATGAGTGTTCAT-TATCAAATGATTCAAAATATTTTAAATA
53 GTAAGCGGTTCTGCGT--AAATCTAT-A---ACCATATAT-AAA--A-AGAAGAT-GCATGAATT
* * * * * * * *
6867122 AATA-CTATCTTATATTTTACCTTAAATTAAAAG-AAAAATGTTACAAAATGTTA
107 ACTACCT-TATA---TTTTATCTTAGATTAAAAGAAAAAATATTA-TAAACGTTA
* * * * * * * *
6867175 CGTAACGTATAATGATTGTCGCAATTATAATTGATCTTTTAACTTTAAGGAAGTAAGCGCTTTTG
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
* * * * * * ** *
6867240 CATAAATCTATAACCACATATATGAAATATGATGCATGAATAACTTTTCTTATATTTTATTTTAG
66 CGTAAATCTATAACCATATATA-AAAAGAAGATGCATGAATTAC-TACCTTATATTTTATCTTAG
* *
6867305 ATTAAAAG-AACAATATTATAAATGTTA
129 ATTAAAAGAAAAAATATTATAAACGTTA
* * * * * *
6867332 CATAACATATAATAATTTTCGCGATTATAATTGTTCTTTTAACTTTTAGAAAGTAAGTGATTCCT
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTT-CT
* *
6867397 -TGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCGTATATTTTATCTTAGA
65 GCGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGA
* *
6867461 TTAATAG-AAAAATATTATAAATGTTA
130 TTAAAAGAAAAAATATTATAAACGTTA
* * * *
6867487 CGTAACATATAATGATTGTTGCTATTATAATTGTT-TGTGTAACTTTTAGAAAGTAAACCGTTCT
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCT-TGTAACTTTTAGAAAGTAAGCGGTTCT
** * *
6867551 TTGTAAATCTATAACCATATATAAAAAGGAGATGCATGAATTACTATCTTATA-TTTATCTTAGA
65 GCGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGA
6867615 TTAAAAGAAAAAA-ATTTATAAACGTTA
130 TTAAAAGAAAAAATA-TTATAAACGTTA
* * * * * *
6867642 CGTAACATATAATTATTGTCGCGATTAGAATTGTTCTTGTAATTTTTAGAAAGTAAGTGATTATG
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
* * * * *
6867707 CATAAATCTATAATCATATATAAAAAGAAGATGCATGAATTACTTTCATT-TATTTTATCATAGA
66 CGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTAC-TACCTTATATTTTATCTTAGA
*
6867771 TTAAAAGAAAAAATATTATGAACGTTA
130 TTAAAAGAAAAAATATTATAAACGTTA
* * * * * * * * *
6867798 CGTAACGTATAATAATTATCGCTATTATAATTGTTCTTTTAACTTTTAAAAAGTAAACGATTTTG
1 CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
** * *
6867863 CGTAAAAT-TATAAATATACATAAAAAGAAGATGTATGAAT
66 CGT-AAATCTATAACCATATATAAAAAGAAGATGCATGAAT
6867903 AATGTAGATA
Statistics
Matches: 1537, Mismatches: 320, Indels: 241
0.73 0.15 0.11
Matches are distributed among these distances:
138 2 0.00
139 7 0.00
140 2 0.00
141 9 0.01
142 12 0.01
143 13 0.01
144 13 0.01
145 3 0.00
146 7 0.00
147 2 0.00
148 13 0.01
149 4 0.00
150 4 0.00
151 3 0.00
152 4 0.00
153 12 0.01
154 123 0.08
155 386 0.25
156 412 0.27
157 329 0.21
158 32 0.02
159 15 0.01
160 6 0.00
161 8 0.01
162 5 0.00
163 4 0.00
164 14 0.01
165 6 0.00
166 8 0.01
167 13 0.01
168 4 0.00
169 10 0.01
170 13 0.01
171 17 0.01
172 10 0.01
173 10 0.01
174 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (156 bp):
CGTAACATATAATGATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTG
CGTAAATCTATAACCATATATAAAAAGAAGATGCATGAATTACTACCTTATATTTTATCTTAGAT
TAAAAGAAAAAATATTATAAACGTTA
Done.