Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 39
Found at i:6867538 original size:155 final size:154
Alignment explanation
Indices: 6867124--6867902 Score: 877
Period size: 155 Copynumber: 5.0 Consensus size: 154
6867114 TTTAAATAAA
* * * * * *
6867124 TACTATCTTATATTTTACCTTAAATTAAAAGAAAAATGTTACAAAATGTTACGTAACGTATAATG
1 TACTATCTTATATTTTATCTTAGATTAAAAGAAAAATATTA-TAAATGTTACGTAACATATAATA
* * * * * *
6867189 ATTGTCGCAATTATAATTGATCTTTTAACTTTAAGGAAGTAAGCGCTTTTGCATAAATCTATAAC
65 ATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGATTTTG-ATAAATCTATAAC
* * * *
6867254 CACATATATGAAATATGATGCATGAAT
129 CATATATA-AAAAGAAGATGCATGAAT
* * * * *
6867281 AACTTTTCTTATATTTTATTTTAGATTAAAAGAACAATATTATAAATGTTACATAACATATAATA
1 TAC-TATCTTATATTTTATCTTAGATTAAAAGAAAAATATTATAAATGTTACGTAACATATAATA
* * *
6867346 ATTTTCGCGATTATAATTGTTCTTTTAACTTTTAGAAAGTAAGTGATTCCTTG-TAAATCTATAA
65 ATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGATT--TTGATAAATCTATAA
6867410 CCATATATAAAAAGAAGATGCATGAAT
128 CCATATATAAAAAGAAGATGCATGAAT
* * * *
6867437 TACTACCGTATATTTTATCTTAGATTAATAGAAAAATATTATAAATGTTACGTAACATATAATGA
1 TACTATCTTATATTTTATCTTAGATTAAAAGAAAAATATTATAAATGTTACGTAACATATAATAA
* * * *
6867502 TTGTTGCTATTATAATTGTT-TGTGTAACTTTTAGAAAGTAAACCGTTCTTTG-TAAATCTATAA
66 TTGTCGCGATTATAATTGTTCT-TGTAACTTTTAGAAAGT-AAGCGAT-TTTGATAAATCTATAA
*
6867565 CCATATATAAAAAGGAGATGCATGAAT
128 CCATATATAAAAAGAAGATGCATGAAT
* * *
6867592 TACTATCTTATA-TTTATCTTAGATTAAAAGAAAAAAATTTATAAACGTTACGTAACATATAATT
1 TACTATCTTATATTTTATCTTAGATTAAAAGAAAAATA-TTATAAATGTTACGTAACATATAATA
* * * * *
6867656 ATTGTCGCGATTAGAATTGTTCTTGTAATTTTTAGAAAGTAAGTGATTATGCATAAATCTATAAT
65 ATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGATTTTG-ATAAATCTATAAC
6867721 CATATATAAAAAGAAGATGCATGAAT
129 CATATATAAAAAGAAGATGCATGAAT
* * * * *
6867747 TACTTTCATT-TATTTTATCATAGATTAAAAGAAAAAATATTATGAACGTTACGTAACGTATAAT
1 TACTATC-TTATATTTTATCTTAGATTAAAAG-AAAAATATTATAAATGTTACGTAACATATAAT
* * * * * *
6867811 AATTATCGCTATTATAATTGTTCTTTTAACTTTTAAAAAGTAAACGATTTTGCGTAAAAT-TATA
64 AATTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGATTTTG-AT-AAATCTATA
** * *
6867875 AATATACATAAAAAGAAGATGTATGAAT
127 ACCATATATAAAAAGAAGATGCATGAAT
6867903 AATGTAGATA
Statistics
Matches: 533, Mismatches: 75, Indels: 29
0.84 0.12 0.05
Matches are distributed among these distances:
153 3 0.01
154 28 0.05
155 239 0.45
156 136 0.26
157 92 0.17
158 32 0.06
159 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (154 bp):
TACTATCTTATATTTTATCTTAGATTAAAAGAAAAATATTATAAATGTTACGTAACATATAATAA
TTGTCGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGATTTTGATAAATCTATAACCA
TATATAAAAAGAAGATGCATGAAT
Found at i:6868572 original size:156 final size:155
Alignment explanation
Indices: 6868399--6868704 Score: 429
Period size: 156 Copynumber: 2.0 Consensus size: 155
6868389 TTTGCCCTTA
* * * * *
6868399 GTAACGTATAATAATTGTCGTAATTATAATTGATCTTTTAACTTTTAAAAAGTAAGTAACTCTGC
1 GTAACGAATAATAATTGTCGCAATTATAATTGATCTTTTAACTTCTAAAAAGTAAGCAA-T-TCC
* * *
6868464 A-TAAATCTACAACCATATATAAAAAGAAGATGCATGAATAACTTTCCTTGTATTTTATCTTAGA
64 AGTAAATCTACAACCATATATAAAAAGAAAATGCATGAATAAC-TACCTTATATTTTATCTTAGA
6868528 TT-ATAAGAAAAATT-TTATAAATATTAC
128 TTAAT-AGAAAAATTATTATAAATATTAC
* * *
6868555 GTAACGAATAATAATTGTCGCAATTATAATTGTTCTTTTAACTTCTAGAAAGTAAGCGATTCCAT
1 GTAACGAATAATAATTGTCGCAATTATAATTGATCTTTTAACTTCTAAAAAGTAAGCAATTCCA-
* *
6868620 GTAAATCTATAACCATATATAAAAAGAAAATGCATGAATTACTACCTTATATTTTATCTTAGATT
65 GTAAATCTACAACCATATATAAAAAGAAAATGCATGAATAACTACCTTATATTTTATCTTAGATT
6868685 AATAGAAAAATTATTATAAA
130 AATAGAAAAATTATTATAAA
6868705 CGTTAGGCCT
Statistics
Matches: 133, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
154 3 0.02
155 31 0.23
156 99 0.74
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (155 bp):
GTAACGAATAATAATTGTCGCAATTATAATTGATCTTTTAACTTCTAAAAAGTAAGCAATTCCAG
TAAATCTACAACCATATATAAAAAGAAAATGCATGAATAACTACCTTATATTTTATCTTAGATTA
ATAGAAAAATTATTATAAATATTAC
Found at i:6868909 original size:27 final size:27
Alignment explanation
Indices: 6868871--6868943 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
6868861 ATAAACGAAC
*
6868871 ATAAATGAACACAAACAAACGAACATA
1 ATAAATGAACACAAACAAACGAACACA
6868898 ATAAATGAACACAAACAAACGAACACA
1 ATAAATGAACACAAACAAACGAACACA
* *
6868925 ATAAACGAACA-ACACAAAC
1 ATAAATGAACACAAACAAAC
6868944 ACAAAAAACA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.63, C:0.22, G:0.07, T:0.08
Consensus pattern (27 bp):
ATAAATGAACACAAACAAACGAACACA
Found at i:6868943 original size:13 final size:12
Alignment explanation
Indices: 6868881--6868943 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 12
6868871 ATAAATGAAC
6868881 ACAAACAAACGA
1 ACAAACAAACGA
* *
6868893 ACATAATAAATGAA
1 ACA-AACAAACG-A
6868907 CACAAACAAACGA
1 -ACAAACAAACGA
*
6868920 ACACAATAAACGA
1 ACA-AACAAACGA
6868933 ACAACACAAAC
1 ACAA-ACAAAC
6868944 ACAAAAAACA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
12 7 0.17
13 23 0.57
14 7 0.17
15 3 0.08
ACGTcount: A:0.63, C:0.24, G:0.06, T:0.06
Consensus pattern (12 bp):
ACAAACAAACGA
Found at i:6868945 original size:22 final size:21
Alignment explanation
Indices: 6868911--6868952 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
6868901 AATGAACACA
* *
6868911 AACAAACGAACACAATAAACG
1 AACAAACAAACACAAAAAACG
6868932 AACAACACAAACACAAAAAAC
1 AACAA-ACAAACACAAAAAAC
6868953 AAACTTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.67, C:0.26, G:0.05, T:0.02
Consensus pattern (21 bp):
AACAAACAAACACAAAAAACG
Found at i:6869241 original size:16 final size:14
Alignment explanation
Indices: 6869202--6869242 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
6869192 CTGTTCGAAT
6869202 ATAAATGAACAAAC
1 ATAAATGAACAAAC
*
6869216 ATAAATGAACGAAC
1 ATAAATGAACAAAC
6869230 ATATAATCGAACA
1 ATA-AAT-GAACA
6869243 TTCATGAACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 16 0.70
15 3 0.13
16 4 0.17
ACGTcount: A:0.59, C:0.15, G:0.10, T:0.17
Consensus pattern (14 bp):
ATAAATGAACAAAC
Found at i:6869705 original size:135 final size:136
Alignment explanation
Indices: 6869432--6869707 Score: 369
Period size: 135 Copynumber: 2.0 Consensus size: 136
6869422 TTACATAACG
* * **
6869432 TATAATGATTGTCACGATTATAATTGTTCTTTTAACTTTTAGAAAGTAAGCGGTTTTGTGTAAAT
1 TATAATGATTGTCACGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTACGTAAAT
* * * *
6869497 TTATAACCATTATAAAAAGAAGATGCATGAATAATTTTCCTTATATTTTATCTTAGATTAAAAGA
66 CTATAACCATTATAAAAAGAAGATGCATGAATAACTATCATTATATTTTATCTTAGATTAAAAGA
6869562 AAAAAT
131 AAAAAT
**
6869568 TATAATGATTGTTGCGATTATAATTGTTCTTGTAAC-TTTAGAAAGTAAGCGGTTCTACGTAAAT
1 TATAATGATTGTCACGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTACGTAAAT
* * * ** *
6869632 CTAT-ACCATATATAAAAAGAATATGCATGAATTACTAT-ATTTTATTTTATCTTATTTTAGAAG
66 CTATAACCAT-TATAAAAAGAAGATGCATGAATAACTATCATTATATTTTATCTTAGATTAAAAG
6869695 AAAAATAT
130 AAAAA-AT
6869703 TATAA
1 TATAA
6869708 ACTTTACGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
134 30 0.25
135 59 0.48
136 33 0.27
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (136 bp):
TATAATGATTGTCACGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAGCGGTTCTACGTAAAT
CTATAACCATTATAAAAAGAAGATGCATGAATAACTATCATTATATTTTATCTTAGATTAAAAGA
AAAAAT
Found at i:6869851 original size:154 final size:153
Alignment explanation
Indices: 6869568--6869943 Score: 465
Period size: 154 Copynumber: 2.5 Consensus size: 153
6869558 AAGAAAAAAT
* * * *
6869568 TATAATGATTGTTGCGATTATAATTGTTCTTGTAAC-TTTAGAAAGTAAGCGGTTCTACGTAAA-
1 TATAATGATTGTTGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAACGATTATGCGTAAAG
* * *
6869631 TCTATACCATATATAAAAAGAATATGCATGAATTACTATATTTTATTTTATCTTATTTTAGAAGA
66 T-TATACCATATATAAAAAGAAGATGCATGAATTA-TATATTTTATTTTATCTTAATTAAGAAGA
* **
6869696 AAAATATTATAAACTTTACGTAATG
129 AAAATACTATAAACTTTACGTAACA
** * * * * * *
6869721 TATAATGATTGTCACTATTATAATTGTTCTTTTAACTTTTAAAAAGTAAACAATTTTGTGTAAAG
1 TATAATGATTGTTGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAACGATTATGCGTAAAG
* *
6869786 TTATAAC-TATATATAAAAGAAGATGTATGAATT-TATATTTTATAATTTATCTTAGATTAAG-A
66 TTATACCATATATA-AAAAGAAGATGCATGAATTATATATTTTAT--TTTATCTTA-ATTAAGAA
*
6869848 GAAAAATACTATAAACTTTATGTAACA
127 GAAAAATACTATAAACTTTACGTAACA
*
6869875 TATAATGATTGTTGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAATGATTATGCGTAAAG
1 TATAATGATTGTTGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAACGATTATGCGTAAAG
6869940 TTAT
66 TTAT
6869944 GTTGCAGCTA
Statistics
Matches: 188, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
152 10 0.05
153 38 0.20
154 135 0.72
155 5 0.03
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (153 bp):
TATAATGATTGTTGCGATTATAATTGTTCTTGTAACTTTTAGAAAGTAAACGATTATGCGTAAAG
TTATACCATATATAAAAAGAAGATGCATGAATTATATATTTTATTTTATCTTAATTAAGAAGAAA
AATACTATAAACTTTACGTAACA
Found at i:6873925 original size:30 final size:29
Alignment explanation
Indices: 6873891--6873985 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 29
6873881 TTTTTATTCC
6873891 ACCATATTTTATTCAACATCCCATGCCACT
1 ACCAT-TTTTATTCAACATCCCATGCCACT
6873921 ACCATTTTTTATTCAACATCCCATGCCACT
1 ACCA-TTTTTATTCAACATCCCATGCCACT
* *
6873951 ACCATTTTATATTCAATATCCCATGCCACC
1 ACCATTTT-TATTCAACATCCCATGCCACT
6873981 ACCAT
1 ACCAT
6873986 GCCCCCACGT
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
29 4 0.07
30 56 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (29 bp):
ACCATTTTTATTCAACATCCCATGCCACT
Found at i:6877103 original size:125 final size:124
Alignment explanation
Indices: 6876955--6877192 Score: 334
Period size: 125 Copynumber: 1.9 Consensus size: 124
6876945 TTAGATTAAG
* * * * *
6876955 AGAAAAAATATTGTAAACGTTACGTAACCTATAATGATTGTC-TCGATTATAATTGTTTTTGTAA
1 AGAAAAAATATTATAAACCTTACGTAACCTATAATGATTGTCGT-GATTATAATTATTCTTCTAA
* * *
6877019 CTTTTAGAAATTAAATGGCTCTGCGTAAATCTATAACTATATATATAAAAATGCATGAATA
65 CTTCTAGAAAGTAAATGGCTCTGCGTAAATCTATAACCATATATA-AAAAATGCATGAATA
* *
6877080 AGAAAAAATATTATAAACCTTACGTAACGTATAATGATTTTCGTGATTATAATTATTCTTCTAAC
1 AGAAAAAATATTATAAACCTTACGTAACCTATAATGATTGTCGTGATTATAATTATTCTTCTAAC
* * *
6877145 TTCTAGAAAGTAAGTGGTTCTGTGTAAATCTATAACCATATATAAAAA
66 TTCTAGAAAGTAAATGGCTCTGCGTAAATCTATAACCATATATAAAAA
6877193 GAAGAGCCAT
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
124 4 0.04
125 94 0.95
126 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (124 bp):
AGAAAAAATATTATAAACCTTACGTAACCTATAATGATTGTCGTGATTATAATTATTCTTCTAAC
TTCTAGAAAGTAAATGGCTCTGCGTAAATCTATAACCATATATAAAAAATGCATGAATA
Found at i:6878185 original size:155 final size:156
Alignment explanation
Indices: 6877892--6878360 Score: 486
Period size: 155 Copynumber: 3.0 Consensus size: 156
6877882 TAACTTTACT
* *
6877892 TATATTTTATCTTAGGTTAAAAGAAAAAATATTATAAACGTTACGTTACGTAACGTATAATAATT
1 TATATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTACG-TA---AA-GTATAATGATT
* * * * * * * * *
6877957 GTTGCAATTATAATTGTTTTTTTTTACTTATT-GAAAGTAAACGATTCTGCGTAAATTTATAATC
61 GTCGCGATTATAATT-ATTCTTTTAACTT-TTAAAAAGTAAACGATTTTGCGTAAAGTTATAACC
*
6878021 ATATA-AAAAAGTAGATTG-ATGAATTACTACCA
124 ATATATAAAAAGAAGA-TGCATGAATTACTACCA
* *
6878053 TATATTTTATCTTAGATTAATAG-AAAAATATTATAAACGTTACGTAAAGTATAACGATTGTCGC
1 TATATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAAAGTATAATGATTGTCGC
*
6878117 GATTATAATTATTCTTTTAACTTTTAAAAAGTAAA-TATTTATGCGTAAAGTTATAACCATATAT
66 GATTATAATTATTCTTTTAACTTTTAAAAAGTAAACGATTT-TGCGTAAAGTTATAACCATATAT
* *
6878181 AAAAAGAAGATGCATGAATTACTATCT
130 AAAAAGAAGATGCATGAATTACTACCA
* * * * * *
6878208 TATATTTTATCATATATTAAAAGAAACAAAATTTTATGAACGTTACAT-ATGTATAATGATTG-C
1 TATATTTTATCTTAGATTAAAAG-AA-AAAATATTATAAACGTTACGTAAAGTATAATGATTGTC
* * * * *
6878271 -TGATATGAAAAATATTCTTTTAACTTTTAAAAAGTAAACGATTTTGCGTAAAGCTATAACTATA
64 GCGAT-T-ATAATTATTCTTTTAACTTTTAAAAAGTAAACGATTTTGCGTAAAGTTATAACCATA
*
6878335 TATATAAAAGGATGATGCATGAATTA
127 TATA-AAAA-GAAGATGCATGAATTA
6878361 TAGTAGATAT
Statistics
Matches: 264, Mismatches: 32, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
153 5 0.02
154 40 0.15
155 66 0.25
156 4 0.02
157 64 0.24
158 26 0.10
159 17 0.06
160 21 0.08
161 21 0.08
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.38
Consensus pattern (156 bp):
TATATTTTATCTTAGATTAAAAGAAAAAATATTATAAACGTTACGTAAAGTATAATGATTGTCGC
GATTATAATTATTCTTTTAACTTTTAAAAAGTAAACGATTTTGCGTAAAGTTATAACCATATATA
AAAAGAAGATGCATGAATTACTACCA
Found at i:6878893 original size:157 final size:155
Alignment explanation
Indices: 6878689--6879013 Score: 424
Period size: 157 Copynumber: 2.1 Consensus size: 155
6878679 ATATTAACTT
* * * *
6878689 ATTATGTTTTATCTTAGATT--AA-AATAAAATAATTATAAACGTTACGTAACGTATAATGATTG
1 ATTATATTTTATCTTAAATTAAAAGAAAAAAATAATTATAAACGTTACGTAACGTATAATGATTA
* * * * *
6878751 TTGCAATTATAATTGTTCTTTTTACTTTTAGAAAGTAAGCGGTTCTGCGTAAATCTATAACCATA
66 TTGCAATTATAATTGTTATTGTAACTTTT-GAAAGTAAGCGATTCTACGTAAATCTATAACCATA
*
6878816 TATAAAAAGAAGATGCATGAATCACTAC
130 TATAAAAA-AA-ATGCATAAATCACTAC
* *
6878844 CTTATATTTTTTCTTAAATTAAAAGAAAAAAAT-ATTATAAACGTTACGTAACGTATAATGATTA
1 ATTATATTTTATCTTAAATTAAAAGAAAAAAATAATTATAAACGTTACGTAACGTATAATGATTA
* * * *
6878908 TTTCGATTATAATTGTTATTGTAACTTTTGAAAGTAAGCGATTTTACGTAAATCTATAATCATAT
66 TTGCAATTATAATTGTTATTGTAACTTTTGAAAGTAAGCGATTCTACGTAAATCTATAACCATAT
* * *
6878973 ATAAAAAAAATGTATAAATTACTAT
131 ATAAAAAAAATGCATAAATCACTAC
6878998 ATTATATTTTATCTTA
1 ATTATATTTTATCTTA
6879014 GACTAAAAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
154 26 0.18
155 18 0.12
156 39 0.27
157 56 0.38
158 7 0.05
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.40
Consensus pattern (155 bp):
ATTATATTTTATCTTAAATTAAAAGAAAAAAATAATTATAAACGTTACGTAACGTATAATGATTA
TTGCAATTATAATTGTTATTGTAACTTTTGAAAGTAAGCGATTCTACGTAAATCTATAACCATAT
ATAAAAAAAATGCATAAATCACTAC
Found at i:6879315 original size:23 final size:23
Alignment explanation
Indices: 6879268--6879315 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
6879258 CTTTTTATTA
*
6879268 TTATTAATTAAATTTTGATATAT
1 TTATTAATTAAAATTTGATATAT
6879291 TTATTAA-TACAAATTT-ATATGAT
1 TTATTAATTA-AAATTTGATAT-AT
6879314 TT
1 TT
6879316 TTTTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (23 bp):
TTATTAATTAAAATTTGATATAT
Found at i:6883288 original size:6 final size:6
Alignment explanation
Indices: 6883281--6883586 Score: 525
Period size: 6 Copynumber: 52.0 Consensus size: 6
6883271 AACAGTTATA
* * * * *
6883281 TATATA TATATA TATATA TATATA TATATA TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883329 TATATG --TATG TATATG TATATG TATATG TATATG TATATG --TATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883373 TATATG TATATG TATATG TATATG TATATG TATATG TATATG --TATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883419 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883467 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883515 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
6883563 TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG
6883587 GTGTGCGCGT
Statistics
Matches: 293, Mismatches: 1, Indels: 12
0.96 0.00 0.04
Matches are distributed among these distances:
4 12 0.04
6 281 0.96
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:6886410 original size:380 final size:380
Alignment explanation
Indices: 6885709--6886469 Score: 1504
Period size: 380 Copynumber: 2.0 Consensus size: 380
6885699 CCACCCTTGT
6885709 AACATCCGCAATACCGGGTTAGTGACAAAATTGTAAAGTTTCAGAATTTGGTGACTAAAGTATAA
1 AACATCCGCAATACCGGGTTAGTGACAAAATTGTAAAGTTTCAGAATTTGGTGACTAAAGTATAA
6885774 GAATGAAATAGTTCAATGATTATTGGATATATATGATGAAGGTTAATTAGTAATTATTAAAGGAA
66 GAATGAAATAGTTCAATGATTATTGGATATATATGATGAAGGTTAATTAGTAATTATTAAAGGAA
6885839 ATTAAGGGTTAAATGGTCATTTGACCAGAAAGATTTTTATATTTCTTTTTAAGGTAATATAAACG
131 ATTAAGGGTTAAATGGTCATTTGACCAGAAAGATTTTTATATTTCTTTTTAAGGTAATATAAACG
6885904 TGGGAAATTTGAGAAACATCCAGAGTTCTCTTCTCCTTTCTTCTTCTTCATACGTGGGAGAGCAA
196 TGGGAAATTTGAGAAACATCCAGAGTTCTCTTCTCCTTTCTTCTTCTTCATACGTGGGAGAGCAA
6885969 GGCAAAGGTGAGAGTTTTATTAGTTGATTATTATTTGAATTTTAAGTTTGGTTTTGATTCTTTGG
261 GGCAAAGGTGAGAGTTTTATTAGTTGATTATTATTTGAATTTTAAGTTTGGTTTTGATTCTTTGG
6886034 GTATTAAATAAGCTTAAGGAAAGCTTATATGTGATTTAAACAATAAGATAAAGGA
326 GTATTAAATAAGCTTAAGGAAAGCTTATATGTGATTTAAACAATAAGATAAAGGA
*
6886089 AACATCCGCAATACCGGGTTAGTGACCAAATTGTAAAGTTTCAGAATTTGGTGACTAAAGTATAA
1 AACATCCGCAATACCGGGTTAGTGACAAAATTGTAAAGTTTCAGAATTTGGTGACTAAAGTATAA
*
6886154 GAATGAAATAGTTCAATGATTATTGGATGTATATGATGAAGGTTAATTAGTAATTATTAAAGGAA
66 GAATGAAATAGTTCAATGATTATTGGATATATATGATGAAGGTTAATTAGTAATTATTAAAGGAA
6886219 ATTAAGGGTTAAATGGTCATTTGACCAGAAAGATTTTTATATTTCTTTTTAAGGTAATATAAACG
131 ATTAAGGGTTAAATGGTCATTTGACCAGAAAGATTTTTATATTTCTTTTTAAGGTAATATAAACG
6886284 TGGGAAATTTGAGAAACATCCAGAGTTCTCTTCTCCTTTCTTCTTCTTCATACGTGGGAGAGCAA
196 TGGGAAATTTGAGAAACATCCAGAGTTCTCTTCTCCTTTCTTCTTCTTCATACGTGGGAGAGCAA
6886349 GGCAAAGGTGAGAGTTTTATTAGTTGATTATTATTTGAATTTTAAGTTTGGTTTTGATTCTTTGG
261 GGCAAAGGTGAGAGTTTTATTAGTTGATTATTATTTGAATTTTAAGTTTGGTTTTGATTCTTTGG
6886414 GTATTAAATAAGCTTAAGGAAAGCTTATATGTGATTTAAACAATAAGATAAAGGA
326 GTATTAAATAAGCTTAAGGAAAGCTTATATGTGATTTAAACAATAAGATAAAGGA
6886469 A
1 A
6886470 TTATGAAGGA
Statistics
Matches: 379, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
380 379 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (380 bp):
AACATCCGCAATACCGGGTTAGTGACAAAATTGTAAAGTTTCAGAATTTGGTGACTAAAGTATAA
GAATGAAATAGTTCAATGATTATTGGATATATATGATGAAGGTTAATTAGTAATTATTAAAGGAA
ATTAAGGGTTAAATGGTCATTTGACCAGAAAGATTTTTATATTTCTTTTTAAGGTAATATAAACG
TGGGAAATTTGAGAAACATCCAGAGTTCTCTTCTCCTTTCTTCTTCTTCATACGTGGGAGAGCAA
GGCAAAGGTGAGAGTTTTATTAGTTGATTATTATTTGAATTTTAAGTTTGGTTTTGATTCTTTGG
GTATTAAATAAGCTTAAGGAAAGCTTATATGTGATTTAAACAATAAGATAAAGGA
Found at i:6886807 original size:21 final size:21
Alignment explanation
Indices: 6886778--6886822 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6886768 GATTTCTGGG
* *
6886778 CAAGAGGAATCGGTACCCATT
1 CAAGAGGAACCGATACCCATT
* *
6886799 CAAGGGGAACCGATACCCCTT
1 CAAGAGGAACCGATACCCATT
6886820 CAA
1 CAA
6886823 ACGAACAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CAAGAGGAACCGATACCCATT
Found at i:6888169 original size:149 final size:148
Alignment explanation
Indices: 6887911--6888215 Score: 468
Period size: 149 Copynumber: 2.1 Consensus size: 148
6887901 GAGTCGAGGG
* * * * * *
6887911 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTTTGAGGCACATA
1 TCTACGCGATCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTGAGACACATA
* * *
6887976 CTTGGTCCTTGGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
6888041 ATGGCACTACGGTGCAAT
131 ATGGCACTACGGTGCAAT
* *
6888059 TCTACGCGATCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTC-TTGAAAGACACA
1 TCTACGCGATCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTG--AGACACA
*
6888123 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
64 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATT
*
6888188 ATATGGCACTACGGTGCAGT
129 ATATGGCACTACGGTGCAAT
6888208 TCTACGCG
1 TCTACGCG
6888216 GCACTTCGGT
Statistics
Matches: 142, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
147 3 0.02
148 45 0.32
149 94 0.66
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (148 bp):
TCTACGCGATCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTGAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTAGGGACATTATTAT
ATGGCACTACGGTGCAAT
Found at i:6888236 original size:23 final size:23
Alignment explanation
Indices: 6888192--6888236 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
6888182 ATTATTATAT
* *
6888192 GGCACTACGGTGCAGTTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
6888215 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
6888237 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:6920292 original size:3 final size:3
Alignment explanation
Indices: 6920279--6920333 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
6920269 CTAAGTTTTA
* * *
6920279 ATT ATTT ATT ATT ATT ATT ATT ATT ATT GTT -TT ATT AAT AAT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6920324 -TT -TT ATT ATT
1 ATT ATT ATT ATT
6920334 TTTTACAGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
2 6 0.13
3 37 0.80
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6928043 original size:22 final size:21
Alignment explanation
Indices: 6928003--6928043 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
6927993 CTTAATTTTA
*
6928003 AAATCAAGATTTTCTTTTTCC
1 AAATCAAGATTTTCATTTTCC
*
6928024 AAATCAATGATTTTGATTTT
1 AAATCAA-GATTTTCATTTT
6928044 TGAAAGCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (21 bp):
AAATCAAGATTTTCATTTTCC
Found at i:6929631 original size:15 final size:15
Alignment explanation
Indices: 6929611--6929646 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
6929601 TATTCGAATA
6929611 GTTTTTTTCCTCTGT
1 GTTTTTTTCCTCTGT
*
6929626 GTTTTTTTCCTTTGT
1 GTTTTTTTCCTCTGT
6929641 GTTTTT
1 GTTTTT
6929647 GTTTTTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.72
Consensus pattern (15 bp):
GTTTTTTTCCTCTGT
Found at i:6929982 original size:12 final size:12
Alignment explanation
Indices: 6929965--6929998 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6929955 ATAAATTTTT
*
6929965 GGGCGCTTATGG
1 GGGCGCTTATGA
6929977 GGGCGCTTATGA
1 GGGCGCTTATGA
*
6929989 GGGTGCTTAT
1 GGGCGCTTAT
6929999 CATTCCCCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.15, G:0.44, T:0.29
Consensus pattern (12 bp):
GGGCGCTTATGA
Found at i:6936626 original size:57 final size:58
Alignment explanation
Indices: 6936409--6936630 Score: 205
Period size: 57 Copynumber: 3.9 Consensus size: 58
6936399 AACATGATGT
* * * *
6936409 TTTCAAAAGAATTTTTAAAGAAACTAAGCCTGATTTTCATGGGGGGTTT-TT-ATGATGA
1 TTTCCAAAGAATTTTTAAAGAAACTAAGCCTAATTTTC-T-AGGGGTTTCTTGATGATTA
* *
6936467 TTTCCAATGAATTTTAAAAAGAAACTAAGCCTAATTTT-TAGGGGTTTCTTGATG--T-
1 TTTCCAAAGAATTTT-TAAAGAAACTAAGCCTAATTTTCTAGGGGTTTCTTGATGATTA
* * * * *
6936522 TTT-CAAATGAGTTTTT--CGAAACTAAACCTGATTTTC-AAGGGTTTCTTGATGATTA
1 TTTCCAAA-GAATTTTTAAAGAAACTAAGCCTAATTTTCTAGGGGTTTCTTGATGATTA
* * *
6936577 TTTCCAAAGAATTTTTAAAGAAGCTAAGCCTAATTTT-TTGGTGTTTCTTGATGA
1 TTTCCAAAGAATTTTTAAAGAAACTAAGCCTAATTTTCTAGGGGTTTCTTGATGA
6936631 CAACTGTAAA
Statistics
Matches: 131, Mismatches: 21, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
52 30 0.23
54 4 0.03
55 19 0.15
56 11 0.08
57 31 0.24
58 16 0.12
59 20 0.15
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.41
Consensus pattern (58 bp):
TTTCCAAAGAATTTTTAAAGAAACTAAGCCTAATTTTCTAGGGGTTTCTTGATGATTA
Found at i:6936910 original size:59 final size:59
Alignment explanation
Indices: 6936818--6936966 Score: 219
Period size: 59 Copynumber: 2.5 Consensus size: 59
6936808 GGATGTTTTC
*
6936818 ACATTTCCTTTGCTCGATTCACAACACTTCGAATCAGGAA-CACCTCACTTGAGGGATCA
1 ACATTTCCTTTGCTCGATTCACAACACTTCGAATCAAGAATCACCT-ACTTGAGGGATCA
* * **
6936877 ACATTTCCTTTGCTTGATTCACAACACTTCGAATCAATAATGTCCTACTTGAGGGATCA
1 ACATTTCCTTTGCTCGATTCACAACACTTCGAATCAAGAATCACCTACTTGAGGGATCA
*
6936936 ACATTTCCCATTGCTCGATTCACAACACTTC
1 ACATTT-CCTTTGCTCGATTCACAACACTTC
6936967 AAATTAGAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
59 56 0.69
60 25 0.31
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (59 bp):
ACATTTCCTTTGCTCGATTCACAACACTTCGAATCAAGAATCACCTACTTGAGGGATCA
Found at i:6937082 original size:41 final size:42
Alignment explanation
Indices: 6936977--6937082 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
6936967 AAATTAGAAA
* * *
6936977 AAGTCATTCGGGCCAT-CAGTATGTCTTTCGAGCATGATGCTT
1 AAGTCATTCGGGCCATCCA-TAAGTCTTTCGAGCAAGATGCAT
* * *
6937019 AAATCATTCGGGTCATCTATAAGTCTTTCGAGCAAGATG-AT
1 AAGTCATTCGGGCCATCCATAAGTCTTTCGAGCAAGATGCAT
6937060 AAGTCATTCGGGCCATCCATAAG
1 AAGTCATTCGGGCCATCCATAAG
6937083 ACCTTTGGAC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
41 21 0.39
42 32 0.59
43 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (42 bp):
AAGTCATTCGGGCCATCCATAAGTCTTTCGAGCAAGATGCAT
Found at i:6937845 original size:11 final size:11
Alignment explanation
Indices: 6937829--6937863 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
6937819 TTCCTCTGTG
6937829 TTTTTTCTTTT
1 TTTTTTCTTTT
*
6937840 TTTTTTGTTTT
1 TTTTTTCTTTT
*
6937851 TGTTTTCTTTT
1 TTTTTTCTTTT
6937862 TT
1 TT
6937864 GGGATCTCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:6937850 original size:18 final size:18
Alignment explanation
Indices: 6937830--6937864 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
6937820 TCCTCTGTGT
*
6937830 TTTTTCTTTT-TTTTTTG
1 TTTTTGTTTTCTTTTTTG
6937847 TTTTTGTTTTCTTTTTTG
1 TTTTTGTTTTCTTTTTTG
6937865 GGATCTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.86
Consensus pattern (18 bp):
TTTTTGTTTTCTTTTTTG
Found at i:6939733 original size:11 final size:11
Alignment explanation
Indices: 6939717--6939790 Score: 85
Period size: 11 Copynumber: 7.5 Consensus size: 11
6939707 CTTGCATCGA
6939717 TGCATCAGTAG
1 TGCATCAGTAG
6939728 TGCATC-G-A-
1 TGCATCAGTAG
6939736 TGCATCAGTAG
1 TGCATCAGTAG
6939747 TGCATC-G-A-
1 TGCATCAGTAG
6939755 TGCATCAGTAG
1 TGCATCAGTAG
6939766 TGCATC-G-A-
1 TGCATCAGTAG
6939774 TGCATCAGTAG
1 TGCATCAGTAG
6939785 TGCATC
1 TGCATC
6939791 GATGCATACC
Statistics
Matches: 54, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
8 18 0.33
9 6 0.11
10 6 0.11
11 24 0.44
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (11 bp):
TGCATCAGTAG
Found at i:6939733 original size:19 final size:19
Alignment explanation
Indices: 6939709--6939797 Score: 178
Period size: 19 Copynumber: 4.7 Consensus size: 19
6939699 ATTTAATTCT
6939709 TGCATCGATGCATCAGTAG
1 TGCATCGATGCATCAGTAG
6939728 TGCATCGATGCATCAGTAG
1 TGCATCGATGCATCAGTAG
6939747 TGCATCGATGCATCAGTAG
1 TGCATCGATGCATCAGTAG
6939766 TGCATCGATGCATCAGTAG
1 TGCATCGATGCATCAGTAG
6939785 TGCATCGATGCAT
1 TGCATCGATGCAT
6939798 ACCTTCATTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 70 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (19 bp):
TGCATCGATGCATCAGTAG
Found at i:6940658 original size:103 final size:103
Alignment explanation
Indices: 6940534--6940854 Score: 588
Period size: 103 Copynumber: 3.1 Consensus size: 103
6940524 GTCGAGGGTC
*
6940534 TATGTGGTTCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
6940599 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
6940637 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAAACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
6940702 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
6940740 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* *
6940805 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
6940843 TATGTGGTCCTT
1 TATGTGGTCCTT
6940855 ATGGACATTA
Statistics
Matches: 210, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 210 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:6940910 original size:23 final size:23
Alignment explanation
Indices: 6940871--6940933 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
6940861 ATTATTATAT
* *
6940871 GGCACTACGGTGCAATTCTACGC
1 GGCACTCCAGTGCAATTCTACGC
* *
6940894 GGTACTCCAGTGCAATTCTACGT
1 GGCACTCCAGTGCAATTCTACGC
* *
6940917 GGCACTTCGGTGCAATT
1 GGCACTCCAGTGCAATT
6940934 ATATGAGCTG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (23 bp):
GGCACTCCAGTGCAATTCTACGC
Found at i:6945821 original size:11 final size:11
Alignment explanation
Indices: 6945805--6945840 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6945795 TATGCACCGA
6945805 TGCATCAGTAG
1 TGCATCAGTAG
6945816 TGCATCA--A-
1 TGCATCAGTAG
6945824 TGCATCAGTAG
1 TGCATCAGTAG
6945835 TGCATC
1 TGCATC
6945841 GATGCATACC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.32
9 1 0.05
10 1 0.05
11 13 0.59
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (11 bp):
TGCATCAGTAG
Found at i:6945826 original size:19 final size:19
Alignment explanation
Indices: 6945804--6945847 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
6945794 TTATGCACCG
6945804 ATGCATCAGTAGTGCATCA
1 ATGCATCAGTAGTGCATCA
*
6945823 ATGCATCAGTAGTGCATCG
1 ATGCATCAGTAGTGCATCA
6945842 ATGCAT
1 ATGCAT
6945848 ACCTTCATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (19 bp):
ATGCATCAGTAGTGCATCA
Found at i:6946707 original size:103 final size:103
Alignment explanation
Indices: 6946581--6946901 Score: 597
Period size: 103 Copynumber: 3.1 Consensus size: 103
6946571 GTCGAGGGTC
6946581 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
6946646 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
6946684 TATGTGGTTCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
6946749 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
6946787 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
6946852 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
6946890 TATGTGGTCCTT
1 TATGTGGTCCTT
6946902 ATGGACATTA
Statistics
Matches: 212, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 212 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:6946976 original size:23 final size:23
Alignment explanation
Indices: 6946918--6946980 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
6946908 ATTATTATAT
6946918 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * * *
6946941 GGTACTCCAGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
6946964 TGCACTTCGGTGCAATT
1 GGCACTACGGTGCAATT
6946981 ATATGAGCTG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.29
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:6948636 original size:59 final size:59
Alignment explanation
Indices: 6948580--6948886 Score: 307
Period size: 59 Copynumber: 5.2 Consensus size: 59
6948570 ATGGCACTAT
*
6948580 ATGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGCACTGA
1 ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGA
*
6948639 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGA
1 ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGA
* * * * ** * * *
6948698 GTGTGCTAAAATGATAAGGAAATCATATTGAATATATTAATTTCTAGATAGG-GCA-TTA
1 ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAT-GGAGCACTGA
* * *** *
6948756 TATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCATAAAAAAACACT-A
1 -ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT-ATGGAGCACTGA
* * * * ** * **
6948816 AGGGTGCTACAAGGATAAGGAAATCATACTAACAGTATGGATTTTCATATAGG-GCACTTC
1 A-TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATAT-GGAGCACTGA
6948876 ATGTGCTAAAA
1 ATGTGCTAAAA
6948887 ATGGTAAAGG
Statistics
Matches: 200, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
58 2 0.01
59 153 0.76
60 44 0.22
61 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (59 bp):
ATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGA
Found at i:6948718 original size:118 final size:118
Alignment explanation
Indices: 6948581--6949077 Score: 399
Period size: 118 Copynumber: 4.2 Consensus size: 118
6948571 TGGCACTATA
* *
6948581 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATAT-GGAGCACTGAGTGTGC
1 TGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCATATAGG-GCACTTAGTGTGC
*
6948645 TAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGAG
65 TAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGCACTGAG
* ** * * *
6948699 TGTGCTAAAATGATAAGGAAATCATATTGAATATATTAATTTCTAGATAGGGCA-TTATATGTGC
1 TGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCATATAGGGCACTTA-GTGTGC
* * * * * *
6948763 TAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCATAAAAAAACACTAAG
65 TAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT-ATAGAGCACTGAG
* * * * * *
6948818 GGTGCTACAAGGATAAGGAAATCATACT-AACAGTATGGATTTTCATATAGGGCACTTCA-TGTG
1 TGTGCTAAAATGATAAGGAAATCATATTGAA-TGTATGGATTTCCATATAGGGCACTT-AGTGTG
* * * * *
6948881 CTAAAAATGGTAAAGG-GATCATACT-AATGGTATGGATTCTCGA-ATAG-GACACTTCAG
64 CT-AAAATGAT-AAGGAAATCATACTGAGT-GTATGGATT-TCCATATAGAG-CAC-TGAG
* * * * *
6948938 -GTGCTAAAAATGGTAAATG-AATCGTATT-AATGGTATGGATTCTCGA-ATAGGGCACTTCGTG
1 TGTGCT-AAAATGAT-AAGGAAATCATATTGAAT-GTATGGATT-TCCATATAGGGCACTTAGTG
* * * * * *
6948999 TGCTAAAATGAGAAGGAAATCATATTAAGTATAT-GATATTCTAGATAGAGCACTGAG
62 TGCTAAAATGATAAGGAAATCATACTGAGTGTATGGAT-TTCCATATAGAGCACTGAG
* * *
6949056 AGTGCTAATATTATAAGGAAAT
1 TGTGCTAAAATGATAAGGAAAT
6949078 TATACGAATT
Statistics
Matches: 300, Mismatches: 55, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
117 5 0.02
118 112 0.37
119 97 0.32
120 73 0.24
121 13 0.04
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (118 bp):
TGTGCTAAAATGATAAGGAAATCATATTGAATGTATGGATTTCCATATAGGGCACTTAGTGTGCT
AAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATAGAGCACTGAG
Found at i:6948902 original size:60 final size:60
Alignment explanation
Indices: 6948832--6949006 Score: 235
Period size: 60 Copynumber: 2.9 Consensus size: 60
6948822 CTACAAGGAT
** *
6948832 AAGGAAATCATACTAACAGTATGGATTTTC-ATATAGGGCACTTCATGTGCTAAAAATGGTA
1 AAGG-AATCATACTAATGGTATGGATTCTCGA-ATAGGGCACTTCATGTGCTAAAAATGGTA
* * *
6948893 AAGGGATCATACTAATGGTATGGATTCTCGAATAGGACACTTCAGGTGCTAAAAATGGTA
1 AAGGAATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAAATGGTA
* * * *
6948953 AATGAATCGTATTAATGGTATGGATTCTCGAATAGGGCACTTCGTGTGCTAAAA
1 AAGGAATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAA
6949007 TGAGAAGGAA
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
60 95 0.95
61 5 0.05
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (60 bp):
AAGGAATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCATGTGCTAAAAATGGTA
Found at i:6949208 original size:36 final size:36
Alignment explanation
Indices: 6949159--6949231 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
6949149 TCAGTGATGC
* *
6949159 AAATTATAGTAAGTATATTGGAAAAATAAGCTTACG
1 AAATTATAATAAGTATATAGGAAAAATAAGCTTACG
*
6949195 AAATTATAATAAGTATATAGGTAAAATAAGCTTACG
1 AAATTATAATAAGTATATAGGAAAAATAAGCTTACG
6949231 A
1 A
6949232 GCTTATGGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.30
Consensus pattern (36 bp):
AAATTATAATAAGTATATAGGAAAAATAAGCTTACG
Found at i:6949252 original size:44 final size:44
Alignment explanation
Indices: 6949204--6949480 Score: 437
Period size: 44 Copynumber: 6.2 Consensus size: 44
6949194 GAAATTATAA
*
6949204 TAAGTATATAGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
*
6949248 TAAGTATATGGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
6949292 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
*
6949336 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGA
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
* * * * * *
6949380 TAAGTATATTGATAAAATAAGGTTACAAACTTAGGGATTTAATGG
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA-ATAATGG
*
6949425 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGATTAAATGG
1 TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAT-AATGG
*
6949470 TATGTATATTG
1 TAAGTATATTG
6949481 ATAAGAAATT
Statistics
Matches: 215, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
44 163 0.76
45 52 0.24
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.32
Consensus pattern (44 bp):
TAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGG
Found at i:6949271 original size:36 final size:40
Alignment explanation
Indices: 6949167--6949480 Score: 231
Period size: 44 Copynumber: 7.3 Consensus size: 40
6949157 GCAAATTATA
* * * *
6949167 GTAAGTATATTGG-AAA-AA-TA-AGCTTACGAAATTATA
1 GTAAGTATATTGGTAAATAACTACAGCTTATGGAATAATG
* *
6949203 ATAAGTATATAGGTAAAATAAGCTTACGAGCTTATGGAATAATG
1 GTAAGTATATTGGT-AAATAA-C-TAC-AGCTTATGGAATAATG
*
6949247 GTAAGTATATGGGTAAAATAAGCTTACGAGCTTATGGAATAATG
1 GTAAGTATATTGGT-AAATAA-C-TAC-AGCTTATGGAATAATG
6949291 GTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATG
1 GTAAGTATATTGGT-AAATAA-C-TAC-AGCTTATGGAATAATG
6949335 GTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATG
1 GTAAGTATATTGGT-AAATAA-C-TAC-AGCTTATGGAATAATG
* * * * * *
6949379 ATAAGTATATTGATAAAATAAGGTTACAAACTTAGGGATTTAATG
1 GTAAGTATATTGGT-AAATAA--CTAC-AGCTTATGGA-ATAATG
*
6949424 GTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGATTAAATG
1 GTAAGTATATTGGT-AAATAA-C-TAC-AGCTTATGGAAT-AATG
*
6949469 GTATGTATATTG
1 GTAAGTATATTG
6949481 ATAAGAAATT
Statistics
Matches: 243, Mismatches: 23, Indels: 15
0.86 0.08 0.05
Matches are distributed among these distances:
36 11 0.05
38 3 0.01
39 2 0.01
42 2 0.01
44 174 0.72
45 51 0.21
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (40 bp):
GTAAGTATATTGGTAAATAACTACAGCTTATGGAATAATG
Found at i:6953272 original size:2 final size:2
Alignment explanation
Indices: 6953267--6953316 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
6953257 ACACACACAC
6953267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6953309 AT AT AT AT
1 AT AT AT AT
6953317 GGGCATGACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6955067 original size:42 final size:43
Alignment explanation
Indices: 6955007--6955092 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
6954997 TCTAAAATAA
* *
6955007 ATAACACCATTAATTCTCAATAAGTCTAAA-ATAAAT-AACATC
1 ATAACACCAATAAGTCTCAATAAGTCTAAATA-AAATCAACATC
*
6955049 ATAACACTAATAAGTCTCAATAAGTCTAAATAAAATCAACATC
1 ATAACACCAATAAGTCTCAATAAGTCTAAATAAAATCAACATC
6955092 A
1 A
6955093 ATAATATTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 31 0.79
43 8 0.21
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (43 bp):
ATAACACCAATAAGTCTCAATAAGTCTAAATAAAATCAACATC
Found at i:6955811 original size:34 final size:34
Alignment explanation
Indices: 6955743--6955811 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
6955733 CAGACTTCAG
* * **
6955743 TGCACATAAAACGTGAATTGTGTTATGGCTAAAA
1 TGCACATAAAACGTGAATTGTCTTACGGAAAAAA
* *
6955777 TGCACATAAAACGTGAATTGTCTTCCGTAAAAAA
1 TGCACATAAAACGTGAATTGTCTTACGGAAAAAA
6955811 T
1 T
6955812 AAAATAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (34 bp):
TGCACATAAAACGTGAATTGTCTTACGGAAAAAA
Found at i:6955836 original size:17 final size:18
Alignment explanation
Indices: 6955805--6955838 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6955795 TGTCTTCCGT
6955805 AAAAAATAAAATAAATTG
1 AAAAAATAAAATAAATTG
*
6955823 AAAAAA-AAATTAAATT
1 AAAAAATAAAATAAATT
6955839 AAGCGGGCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AAAAAATAAAATAAATTG
Found at i:6957106 original size:23 final size:23
Alignment explanation
Indices: 6957058--6957121 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
6957048 TGAACTATTT
*
6957058 AAACAAATTAATTAAAAAAAA-TTA
1 AAACAAA-TAA-TAAAAAAAAGTAA
6957082 AAACAAATAATAAAAAAATAGTAA
1 AAACAAATAATAAAAAAA-AGTAA
* *
6957106 AAACATAGAATAAAAA
1 AAACAAATAATAAAAA
6957122 TAAAATAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.23
23 4 0.11
24 23 0.66
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (23 bp):
AAACAAATAATAAAAAAAAGTAA
Found at i:6957656 original size:25 final size:26
Alignment explanation
Indices: 6957634--6957683 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6957624 TTCCTTTATA
6957634 AATACA-TTTTTTTTCTTTTTTTAAC
1 AATACATTTTTTTTTCTTTTTTTAAC
* *
6957659 ATTTCATTTTTTTTTCTTTTTTTAA
1 AATACATTTTTTTTTCTTTTTTTAA
6957684 AAAAAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (26 bp):
AATACATTTTTTTTTCTTTTTTTAAC
Found at i:6960798 original size:60 final size:60
Alignment explanation
Indices: 6960699--6960861 Score: 136
Period size: 60 Copynumber: 2.7 Consensus size: 60
6960689 TTTTAACTTG
* * * * *
6960699 GTCCCTAAA-TTTTTAAATATT-TCAATTCTATCCATAAACTATAAGT-ATCATTTTAAATTA
1 GTCCCCAAACTTTTTAAACATTATAAATTC-ATCC-CAAACTATAA-TCATCATTCTAAATTA
* * * * * *
6960759 GTCCTCAAAC-TTTTAAACATTTTAAATTCATACCCAAACTATGATCTTTATTCTAAATTG
1 GTCCCCAAACTTTTTAAACATTATAAATTCAT-CCCAAACTATAATCATCATTCTAAATTA
* * *
6960819 GTCCCCAAACTTTTTGAACATTATGATTTCATCCCAAACTATA
1 GTCCCCAAACTTTTTAAACATTATAAATTCATCCCAAACTATA
6960862 CATATATATA
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
59 1 0.01
60 56 0.68
61 25 0.30
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.40
Consensus pattern (60 bp):
GTCCCCAAACTTTTTAAACATTATAAATTCATCCCAAACTATAATCATCATTCTAAATTA
Found at i:6963356 original size:24 final size:24
Alignment explanation
Indices: 6963308--6963351 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
6963298 CAGTTGATAT
*
6963308 TTCAAAATCAACTTTAATTTTTTA
1 TTCAAAATCAACTCTAATTTTTTA
6963332 TTCAAAATC-A-TCTAATTTTT
1 TTCAAAATCAACTCTAATTTTT
6963352 ATTATCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 1 0.05
24 9 0.47
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (24 bp):
TTCAAAATCAACTCTAATTTTTTA
Found at i:6973594 original size:23 final size:23
Alignment explanation
Indices: 6973568--6973622 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
6973558 ATCGAGAAAA
6973568 ATTCGTAT-ATAAAGTATACGATC
1 ATTCGTATAAT-AAGTATACGATC
*
6973591 ATTC-TTTGAATAAGTATACGATC
1 ATTCGTAT-AATAAGTATACGATC
6973614 ATTCGTATA
1 ATTCGTATA
6973623 CTTTATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 2 0.07
23 21 0.78
24 4 0.15
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (23 bp):
ATTCGTATAATAAGTATACGATC
Found at i:6975686 original size:20 final size:20
Alignment explanation
Indices: 6975658--6975695 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6975648 CGACCCGATC
*
6975658 TGTTCACCAGCGTTGACCGG
1 TGTTCACCACCGTTGACCGG
*
6975678 TGTTGACCACCGTTGACC
1 TGTTCACCACCGTTGACC
6975696 AGAACTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.32, G:0.26, T:0.26
Consensus pattern (20 bp):
TGTTCACCACCGTTGACCGG
Found at i:6978071 original size:24 final size:25
Alignment explanation
Indices: 6978043--6978097 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
6978033 GAATATTTTA
* * *
6978043 TCTGATTTTC-GATTTGAATTTTGT
1 TCTGATTATCTGATCTGAAATTTGT
*
6978067 TCTGA-CATCTGATCTGAAATTTGT
1 TCTGATTATCTGATCTGAAATTTGT
6978091 TCTGATT
1 TCTGATT
6978098 CCTAACCTGG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.20, C:0.13, G:0.16, T:0.51
Consensus pattern (25 bp):
TCTGATTATCTGATCTGAAATTTGT
Found at i:6978249 original size:55 final size:56
Alignment explanation
Indices: 6978205--6978314 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 56
6978195 TGGAGGGTTT
*
6978205 ATATCTGCAGGTTCCTCGGCTTTGTGCTCAGGGCCTTACTGTTG-TGCAGGGGGTG
1 ATATCTGAAGGTTCCTCGGCTTTGTGCTCAGGGCCTTACTGTTGTTGCAGGGGGTG
* *
6978260 ATATTTGAAGGTTCCTCGGCTTTGTGCTCAGGTCCTTACTGTTG-TGCAGGGGGTG
1 ATATCTGAAGGTTCCTCGGCTTTGTGCTCAGGGCCTTACTGTTGTTGCAGGGGGTG
6978315 TATGGTTCTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.12, C:0.20, G:0.34, T:0.35
Consensus pattern (56 bp):
ATATCTGAAGGTTCCTCGGCTTTGTGCTCAGGGCCTTACTGTTGTTGCAGGGGGTG
Found at i:6985802 original size:2 final size:2
Alignment explanation
Indices: 6985792--6985844 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
6985782 ATGTACATAT
*
6985792 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
6985834 AC AC AC AC AC A
1 AC AC AC AC AC A
6985845 TATATATATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.02
Consensus pattern (2 bp):
AC
Found at i:6992152 original size:3 final size:3
Alignment explanation
Indices: 6992146--6992172 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6992136 AAGAAGAGGA
6992146 AGC AGC AGC AGC AGC AGC AGC AGC AGC
1 AGC AGC AGC AGC AGC AGC AGC AGC AGC
6992173 GGTATCAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:6993083 original size:26 final size:24
Alignment explanation
Indices: 6993054--6993121 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 24
6993044 ATTCAGGGAC
6993054 TTATTTAATTTTTTAAACAATAAAAA
1 TTATTTAATTTTTTAAA-AAT-AAAA
* *
6993080 TTATTTTAA-ATTTTAAATATAAAA
1 TTA-TTTAATTTTTTAAAAATAAAA
*
6993104 TTATTTAAATTATTTAAA
1 TTATTT-AATTTTTTAAA
6993122 TATATATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.09
24 9 0.26
25 8 0.23
26 10 0.29
27 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATTTAATTTTTTAAAAATAAAA
Found at i:6993110 original size:23 final size:26
Alignment explanation
Indices: 6993072--6993125 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 26
6993062 TTTTTTAAAC
6993072 AATA-AAAATTATTTTAAA-T-TTTA
1 AATATAAAATTATTTTAAATTATTTA
6993095 AATATAAAATTA-TTTAAATTATTTA
1 AATATAAAATTATTTTAAATTATTTA
6993120 AATATA
1 AATATA
6993126 TATAAAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.36
24 8 0.29
25 10 0.36
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
AATATAAAATTATTTTAAATTATTTA
Found at i:6993119 original size:25 final size:24
Alignment explanation
Indices: 6993054--6993125 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
6993044 ATTCAGGGAC
* *
6993054 TTATTTAATTTTTTAAACAATAAAAA
1 TTATTTAAATTTTTAAA-TAT-AAAA
6993080 TTATTTTAAA-TTTTAAATATAAAA
1 TTA-TTTAAATTTTTAAATATAAAA
6993104 TTATTTAAATTATTTAAATATA
1 TTATTTAAATT-TTTAAATATA
6993126 TATAAAATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 6 0.15
24 8 0.20
25 12 0.29
26 10 0.24
27 5 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATTTAAATTTTTAAATATAAAA
Found at i:6994120 original size:111 final size:111
Alignment explanation
Indices: 6993926--6994258 Score: 585
Period size: 111 Copynumber: 3.0 Consensus size: 111
6993916 TGGAAATCAT
* *
6993926 ATATCTCTACACTTTGCTGATACGCTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
6993991 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
* * * *
6994037 ATATCTCGATATTTTGTTGATTCGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
**
6994102 TAATTAGTTGATTTATTTAATATATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
6994148 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
6994213 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
6994259 TTTTTGTAAT
Statistics
Matches: 207, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 207 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:6995784 original size:18 final size:18
Alignment explanation
Indices: 6995761--6995797 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
6995751 GCAGCCACCA
6995761 CAGCCATATATGATGTCG
1 CAGCCATATATGATGTCG
6995779 CAGCCATATATGATGTCG
1 CAGCCATATATGATGTCG
6995797 C
1 C
6995798 CATCGCCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (18 bp):
CAGCCATATATGATGTCG
Found at i:7000488 original size:2 final size:2
Alignment explanation
Indices: 7000481--7000514 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7000471 TAGTATTTTA
7000481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7000515 TTAGTAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7000550 original size:23 final size:23
Alignment explanation
Indices: 7000524--7000598 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
7000514 TTTAGTAACT
* * *
7000524 TATTTTTTATTTTAATATTTTAG
1 TATTTTTTATTTGAATATTATAA
7000547 TATTTATTT-TTTGAATATTATAA
1 TATTT-TTTATTTGAATATTATAA
* *
7000570 TATTTTTATATTTAAAAATT-TAA
1 TATTTTT-TATTTGAATATTATAA
7000593 T-TTTTT
1 TATTTTT
7000599 AAAAAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
22 7 0.16
23 26 0.59
24 11 0.25
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (23 bp):
TATTTTTTATTTGAATATTATAA
Found at i:7003617 original size:25 final size:24
Alignment explanation
Indices: 7003586--7003643 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
7003576 ATATATATAT
7003586 ATATATATATGAAT-ATAACTAATA
1 ATATATATAT-AATCATAACTAATA
* *
7003610 ATAATATATATAATCATAGCTACTA
1 AT-ATATATATAATCATAACTAATA
7003635 ATATATATA
1 ATATATATA
7003644 ACTAATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (24 bp):
ATATATATATAATCATAACTAATA
Found at i:7003622 original size:19 final size:19
Alignment explanation
Indices: 7003598--7003660 Score: 81
Period size: 19 Copynumber: 3.2 Consensus size: 19
7003588 ATATATATGA
7003598 ATATAACTAATAATAATAT
1 ATATAACTAATAATAATAT
* *
7003617 ATATAATCATAGCTACTAATAT
1 ATATAA-C-TA-ATAATAATAT
7003639 ATATAACTAATAATAATAT
1 ATATAACTAATAATAATAT
7003658 ATA
1 ATA
7003661 CACATATAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
19 17 0.46
20 3 0.08
21 3 0.08
22 14 0.38
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (19 bp):
ATATAACTAATAATAATAT
Found at i:7007085 original size:16 final size:16
Alignment explanation
Indices: 7007064--7007094 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7007054 AGAAACTTAT
*
7007064 GAGGAAGATGATAAAG
1 GAGGAAGAAGATAAAG
7007080 GAGGAAGAAGATAAA
1 GAGGAAGAAGATAAA
7007095 AAAGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.35, T:0.10
Consensus pattern (16 bp):
GAGGAAGAAGATAAAG
Found at i:7007103 original size:15 final size:14
Alignment explanation
Indices: 7007083--7007135 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
7007073 GATAAAGGAG
7007083 GAAGAAGATAAAAAA
1 GAAGAAGA-AAAAAA
**
7007098 GAAGAAGAATATGAA
1 GAAGAAGAA-AAAAA
7007113 GAA-AAGAAAAATAA
1 GAAGAAGAAAAA-AA
7007127 GAAGAAGAA
1 GAAGAAGAA
7007136 TGAGGTAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.35
15 19 0.61
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.08
Consensus pattern (14 bp):
GAAGAAGAAAAAAA
Found at i:7007125 original size:17 final size:17
Alignment explanation
Indices: 7007099--7007132 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7007089 GATAAAAAAG
* *
7007099 AAGAAGAATATGAAGAA
1 AAGAAAAATAAGAAGAA
7007116 AAGAAAAATAAGAAGAA
1 AAGAAAAATAAGAAGAA
7007133 GAATGAGGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (17 bp):
AAGAAAAATAAGAAGAA
Found at i:7012422 original size:31 final size:32
Alignment explanation
Indices: 7012387--7012534 Score: 146
Period size: 31 Copynumber: 4.8 Consensus size: 32
7012377 GGAGCATCCT
*
7012387 AGGGCCTA-TGGGCCTACCCAAGAAAGATCTC
1 AGGGCCTACGGGGCCTACCCAAGAAAGATCTC
* *
7012418 AGGGCC-ACGGGGCCTACCCAAGAAATATATC
1 AGGGCCTACGGGGCCTACCCAAGAAAGATCTC
* *
7012449 AGGGACGTA--GGGCCTACCCAAGAATGATCTC
1 AGGG-CCTACGGGGCCTACCCAAGAAAGATCTC
* * *
7012480 AGGG-CTACGGGGTCTACCCAAGAAAAATCAC
1 AGGGCCTACGGGGCCTACCCAAGAAAGATCTC
** *
7012511 AGGGCC-ACAAGGCCTACCTAAGAA
1 AGGGCCTACGGGGCCTACCCAAGAA
7012535 TGATTTCGGG
Statistics
Matches: 95, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
29 2 0.02
30 1 0.01
31 89 0.94
32 2 0.02
33 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.26, T:0.14
Consensus pattern (32 bp):
AGGGCCTACGGGGCCTACCCAAGAAAGATCTC
Found at i:7012514 original size:62 final size:62
Alignment explanation
Indices: 7012396--7012549 Score: 193
Period size: 62 Copynumber: 2.5 Consensus size: 62
7012386 TAGGGCCTAT
* * **
7012396 GGGCCTACCCAAGAAAGATCTCAGGGCCACGGGGCCTACCCAAGAAATATATCAGGGACGTA
1 GGGCCTACCCAAGAATGATCTCAGGGCCACGGGGCCTACCCAAGAAAAATATCAGGGACACA
* * *
7012458 GGGCCTACCCAAGAATGATCTCAGGGCTACGGGGTCTACCCAAGAAAAATCA-CAGGGCCACA
1 GGGCCTACCCAAGAATGATCTCAGGGCCACGGGGCCTACCCAAGAAAAAT-ATCAGGGACACA
* * * *
7012520 AGGCCTACCTAAGAATGATTTCGGGGCCAC
1 GGGCCTACCCAAGAATGATCTCAGGGCCAC
7012550 AAAGCCTACT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 78 0.99
63 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.27, T:0.14
Consensus pattern (62 bp):
GGGCCTACCCAAGAATGATCTCAGGGCCACGGGGCCTACCCAAGAAAAATATCAGGGACACA
Found at i:7015117 original size:18 final size:18
Alignment explanation
Indices: 7015096--7015158 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 18
7015086 TTCATCCCGT
7015096 AGGACCACTATGTCCCTA
1 AGGACCACTATGTCCCTA
7015114 AGGACCACTGTATATGTCCCGT-
1 AGGACCAC----TATGTCCC-TA
*
7015136 AGGACCACTATGTCCCGA
1 AGGACCACTATGTCCCTA
7015154 AGGAC
1 AGGAC
7015159 TACTCCTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
18 21 0.55
22 16 0.42
23 1 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (18 bp):
AGGACCACTATGTCCCTA
Found at i:7015824 original size:14 final size:15
Alignment explanation
Indices: 7015805--7015836 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7015795 TCTCCTAATT
7015805 TATATATTA-TTTCA
1 TATATATTATTTTCA
7015819 TATATATTATTTTCA
1 TATATATTATTTTCA
7015834 TAT
1 TAT
7015837 TGTCCTATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATATTATTTTCA
Found at i:7016742 original size:64 final size:62
Alignment explanation
Indices: 7016629--7016785 Score: 147
Period size: 64 Copynumber: 2.5 Consensus size: 62
7016619 TAATGAAGGT
* * * * **
7016629 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGTATTCAATG-TTGTATTATTATAGGG
1 ATGCATCGATGCA-TACTAATGCATCGATGCATAAAATGCATTCAATGTTTCTATT-TTA-AAAG
* * *
7016693 ATGCATCGATGCATGACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATTTTAAAAG
1 ATGCATCGATGCAT-ACTAATGCATCGATGCA-TAAAATGCATTCAATGTTTCTATTTTAAAAG
*
7016756 AGTGCATCGATGCATTACCAATGCATCGAT
1 A-TGCATCGATGCA-TACTAATGCATCGAT
7016786 ACACCTTCAA
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
63 4 0.05
64 66 0.85
65 8 0.10
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (62 bp):
ATGCATCGATGCATACTAATGCATCGATGCATAAAATGCATTCAATGTTTCTATTTTAAAAG
Found at i:7018298 original size:30 final size:30
Alignment explanation
Indices: 7018169--7018298 Score: 215
Period size: 30 Copynumber: 4.3 Consensus size: 30
7018159 CTTTTTGGTC
* *
7018169 AAAGTCAACAGTCAACGGGTTGACTCAGTT
1 AAAGTTAACGGTCAACGGGTTGACTCAGTT
*
7018199 AAAGTTAACAGTCAACGGGTTGACTCAGTT
1 AAAGTTAACGGTCAACGGGTTGACTCAGTT
7018229 AAAGTTAACGGTCAACGGGTTGACTCAGTT
1 AAAGTTAACGGTCAACGGGTTGACTCAGTT
* *
7018259 AAAGTTAACGGTCAACGGGTTGACTCGGTC
1 AAAGTTAACGGTCAACGGGTTGACTCAGTT
7018289 AAAGTTAACG
1 AAAGTTAACG
7018299 AGTTGACCTA
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 96 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (30 bp):
AAAGTTAACGGTCAACGGGTTGACTCAGTT
Found at i:7021200 original size:31 final size:31
Alignment explanation
Indices: 7021165--7021240 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
7021155 ATAGTTCCAT
*
7021165 AAGAACCTAAGTAATCAGTCCATATATCCCG
1 AAGAACATAAGTAATCAGTCCATATATCCCG
* * * *
7021196 AAGAATATAGGTAATTAGTCCATATGTCCCG
1 AAGAACATAAGTAATCAGTCCATATATCCCG
*
7021227 AAGAACATAGGTAA
1 AAGAACATAAGTAA
7021241 CCCTCGACTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (31 bp):
AAGAACATAAGTAATCAGTCCATATATCCCG
Found at i:7025532 original size:4 final size:4
Alignment explanation
Indices: 7025523--7027986 Score: 3949
Period size: 4 Copynumber: 620.8 Consensus size: 4
7025513 GTTTCATCCC
7025523 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7025571 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATA TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
7025619 TATG TATG TATG TATG TATG TATG TATG TATG TATG CATG CATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * *
7025667 CATG CATG CATG CATG CATG CATG CATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * *
7025715 TATG CATG TATG TATG TATG TATG CATG CATG AATG CATG CATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7025763 CATG --TG TATG TATT TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7025809 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7025857 CATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7025905 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7025953 TATG TATG TATG TA-- TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
7025999 TATG TATG TATA TATG TATG TATG TATG TATG TATG CATG CATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7026047 CATG TATG TATG TATG TATG TATG TATG TATG TATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * *
7026095 TATG TATG TATG CATA CATG TATG TATG CATG CATG CATG CATG --TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7026141 TATG TATG TATG TATG TATG TATG TATG TATG TATG CATG CATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026189 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026237 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026285 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026333 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026381 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026429 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026477 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
7026525 TATG TATG TATG TATG TATG TATG TATG TATG TATG CATG CATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * *
7026573 CATG CATG CATG CATG TATG TATG TATG TATG TATG TATG TATG TATA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
7026621 TATG TATG TATG TATG CATG TATG TATG TATG TATG CATA CATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
7026669 TATG CATG CATG CATG CATG --TG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7026715 TATG CATG TATG TA-- TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026761 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7026809 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7026857 TATG TATG TATA TATG TATG TATG TATG TATG TATG TATA TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7026905 TATA TATG TATG TATG TATG TATG TATG TATA TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * *
7026953 TATG TATG TATG CATG CATG CATG CATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * *
7027001 TATG TATG TATG AATG TATA CATG TATG TATG TATG AATG TATA CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * *
7027049 TATG TATG TATG TATG CATG CATG AATG TATG CATG CATG TATG --TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7027095 TATG TATG TATG TATA TATA TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027143 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027191 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027239 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027287 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027335 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027382 TATG TA-- TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027426 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027474 TATG TATG --TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027520 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027568 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027616 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
7027664 TATG TATG TATG TTTG TATG TATG TATG CATG CATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * *
7027712 CATG CATG TATG CATG CATG CATG CATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027760 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7027808 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
7027856 TATG TATG TATG TATG TATA TATG TATG TATG TATA TATG TATG TATA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7027904 TATG TATG TATG TATG TATG TATG CATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
7027952 TATG TATG TATG TATG TATG CATG CATG CATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
7027987 AAGTACAAAT
Statistics
Matches: 2355, Mismatches: 86, Indels: 38
0.95 0.03 0.02
Matches are distributed among these distances:
2 18 0.01
3 3 0.00
4 2334 0.99
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:7029831 original size:43 final size:43
Alignment explanation
Indices: 7029770--7029855 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
7029760 ACATATACAC
7029770 TTTACGTAAATGTTTAGATAAGATCAATTTGTATGTTTATTTA
1 TTTACGTAAATGTTTAGATAAGATCAATTTGTATGTTTATTTA
7029813 TTTACGTAAATGTTTAGATAAGATCAATTTGTATGTTTATTTA
1 TTTACGTAAATGTTTAGATAAGATCAATTTGTATGTTTATTTA
7029856 CGCATGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (43 bp):
TTTACGTAAATGTTTAGATAAGATCAATTTGTATGTTTATTTA
Found at i:7030836 original size:12 final size:12
Alignment explanation
Indices: 7030819--7030843 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7030809 TTAGATAAAA
7030819 AAATAATTTTTT
1 AAATAATTTTTT
7030831 AAATAATTTTTT
1 AAATAATTTTTT
7030843 A
1 A
7030844 TCTAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AAATAATTTTTT
Found at i:7032259 original size:298 final size:299
Alignment explanation
Indices: 7031716--7032307 Score: 872
Period size: 298 Copynumber: 2.0 Consensus size: 299
7031706 AACGAAAGCC
* *
7031716 GTATAAATCACTGTCTTGCATTTATACCAGAATCGTACTTATGTTAATTAAATAGATGTATTATG
1 GTATAAATCACTGTCTTGCATTTATACAAGAATCGTACTTACGTTAATTAAATAGATGTATTATG
* * *
7031781 TATATCATAGTCTCATGGATTTAGTTTTAGGTGATAAACCTTGGCTGATTATTGGTGGGGGTAGC
66 TATATC--A-TCTCATGGATTTAGTTATAGGTAATAAACCTTGGATGATTATTGGTGGGGGTAGC
* *
7031846 CTTCCATTTCTTTTTCCACTAGCTCTTGGACATATCTGTTCTGTTTGACTTTGAATGTTTGACCT
128 CTTCCATTTCTTTTTCCACTAGCTCTTGAACATATCTGTTCTGATTGACTTTGAATGTTTGACCT
* * * * * *
7031911 TTACGTGTTTTAATTTGTTTGGATCTCTTTCAATTCCGAGCAATTCTGAAATGTTGTCTGAGATT
193 TTACGTCTTTTAATTTATTTGGATCTCTTTCAATTACAAGCAAATCTGAAATGGTGTCTGAGA--
* *
7031976 TGTTCTTTTAAATCCAAGTGATCCTGGCCTACACAAAAAAATCA
256 TGTTCTTTTAAATCCAAGTGATACTGGCCAACACAAAAAAATCA
7032020 GTATAAATCACTGTCTTGCATTTATACAAGAATCGTACTTACGTTAATTAAATAGATGTATTATG
1 GTATAAATCACTGTCTTGCATTTATACAAGAATCGTACTTACGTTAATTAAATAGATGTATTATG
* *
7032085 TATATC-T-T-ATGGATTTAGTTATAGGTAATTAACCTTGGATGATTGTTGGTGGGGGTAG-CTT
66 TATATCATCTCATGGATTTAGTTATAGGTAATAAACCTTGGATGATTATTGGTGGGGGTAGCCTT
* * *
7032146 CCATTTCTTTTTTCACTAGAGCTCTTGAACAT-T-TTTATCTGATTGACTTTGGATGTTTGACCT
131 CCATTTCTTTTTCCACT--AGCTCTTGAACATATCTGT-TCTGATTGACTTTGAATGTTTGACCT
*
7032209 TTACGTCTTTTTATTTATTTGGATCTCTTTCAATTACAAGCAAATCTGAAATGGTGTCTGAGATG
193 TTACGTCTTTTAATTTATTTGGATCTCTTTCAATTACAAGCAAATCTGAAATGGTGTCTGAGATG
*
7032274 TTCTTTTAAATCCAAGTGATATTGGCCAACACAA
258 TTCTTTTAAATCCAAGTGATACTGGCCAACACAA
7032308 TACCAAGTGT
Statistics
Matches: 263, Mismatches: 22, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
296 33 0.13
297 21 0.08
298 126 0.48
299 13 0.05
300 1 0.00
304 69 0.26
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (299 bp):
GTATAAATCACTGTCTTGCATTTATACAAGAATCGTACTTACGTTAATTAAATAGATGTATTATG
TATATCATCTCATGGATTTAGTTATAGGTAATAAACCTTGGATGATTATTGGTGGGGGTAGCCTT
CCATTTCTTTTTCCACTAGCTCTTGAACATATCTGTTCTGATTGACTTTGAATGTTTGACCTTTA
CGTCTTTTAATTTATTTGGATCTCTTTCAATTACAAGCAAATCTGAAATGGTGTCTGAGATGTTC
TTTTAAATCCAAGTGATACTGGCCAACACAAAAAAATCA
Found at i:7036571 original size:20 final size:20
Alignment explanation
Indices: 7036546--7036585 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7036536 ATTTAAATGA
*
7036546 TAAACGAACATAAACGAACG
1 TAAACGAACACAAACGAACG
7036566 TAAACGAACACAAACGAACG
1 TAAACGAACACAAACGAACG
7036586 AACATAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.23, G:0.15, T:0.07
Consensus pattern (20 bp):
TAAACGAACACAAACGAACG
Found at i:7036622 original size:10 final size:10
Alignment explanation
Indices: 7036545--7036584 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
7036535 CATTTAAATG
7036545 ATAAACGAAC
1 ATAAACGAAC
7036555 ATAAACGAAC
1 ATAAACGAAC
*
7036565 GTAAACGAAC
1 ATAAACGAAC
*
7036575 ACAAACGAAC
1 ATAAACGAAC
7036585 GAACATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.57, C:0.23, G:0.12, T:0.07
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:7036908 original size:14 final size:14
Alignment explanation
Indices: 7036885--7036927 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
7036875 GCCCTCTGTT
*
7036885 CGAACCTAAATGAA
1 CGAACATAAATGAA
7036899 CGAACATAAATGAA
1 CGAACATAAATGAA
*
7036913 CGAACATAAACGAA
1 CGAACATAAATGAA
7036927 C
1 C
7036928 ATATAATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.53, C:0.21, G:0.14, T:0.12
Consensus pattern (14 bp):
CGAACATAAATGAA
Found at i:7036950 original size:26 final size:24
Alignment explanation
Indices: 7036896--7036950 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
7036886 GAACCTAAAT
*
7036896 GAACGAACATAAATGAACGAACAT
1 GAACGAACATAAATGAACGAACAC
* **
7036920 AAACGAACATATAATCGAACGTTCAC
1 GAACGAACATA-AAT-GAACGAACAC
7036946 GAACG
1 GAACG
7036951 TAAATGAACG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 10 0.42
25 3 0.12
26 11 0.46
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.15
Consensus pattern (24 bp):
GAACGAACATAAATGAACGAACAC
Found at i:7037562 original size:11 final size:12
Alignment explanation
Indices: 7037522--7037565 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
7037512 TATTTAAACG
*
7037522 GGTATTGGGCCA
1 GGTATTGGGTCA
*
7037534 GGTATTGGGTCG
1 GGTATTGGGTCA
7037546 GGTATTGGGTC-
1 GGTATTGGGTCA
7037557 GGTATTGGG
1 GGTATTGGG
7037566 CTGGGAATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 9 0.30
12 21 0.70
ACGTcount: A:0.11, C:0.09, G:0.48, T:0.32
Consensus pattern (12 bp):
GGTATTGGGTCA
Found at i:7037564 original size:23 final size:24
Alignment explanation
Indices: 7037520--7037565 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
7037510 ATTATTTAAA
7037520 CGGGTATTGGGCCAGGTATTGGGT
1 CGGGTATTGGGCCAGGTATTGGGT
*
7037544 CGGGTATTGGGTC-GGTATTGGG
1 CGGGTATTGGGCCAGGTATTGGG
7037566 CTGGGAATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.11, C:0.11, G:0.48, T:0.30
Consensus pattern (24 bp):
CGGGTATTGGGCCAGGTATTGGGT
Found at i:7043916 original size:58 final size:58
Alignment explanation
Indices: 7043792--7044072 Score: 246
Period size: 58 Copynumber: 4.8 Consensus size: 58
7043782 GTGCTTTATT
* * * * * * *
7043792 TGGAAATTCGTACATTCCATATGATTCCCTTACCATTCTAGCACA-TAAAATGC-CCTATA
1 TGGAAATCCATACACTCAATATGATTTCCTTACCATT-TAGCACACT-CAGTGCTCC-ATA
** * * *
7043851 TGGAAATCCATACTTTCAATATGATTTCTTTATCATTTAACACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTACCATTTAGCACACTCAGTGCTCCATA
* * * * *
7043909 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACA-TAAAATGC-CCTATC
1 TGGAAATCCATACACTCAATATGATTTCCTTACCA-TTTAGCACACT-CAGTGCTCC-ATA
*** * *
7043968 TGGAAATCCATATTTTCAATATGATTTTCTTATCATTTAGCACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTACCATTTAGCACACTCAGTGCTCCATA
* *
7044026 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTTAGCACAC
1 TGGAAATCCATACACTCAATATGATTTCCTTACCA--TTTAGCACAC
7044073 AAAGTGCCAT
Statistics
Matches: 176, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
58 88 0.50
59 78 0.44
60 10 0.06
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (58 bp):
TGGAAATCCATACACTCAATATGATTTCCTTACCATTTAGCACACTCAGTGCTCCATA
Found at i:7043951 original size:117 final size:117
Alignment explanation
Indices: 7043811--7044080 Score: 452
Period size: 117 Copynumber: 2.3 Consensus size: 117
7043801 GTACATTCCA
* *
7043811 TATGATTCCCTTACCATTCTAGCACATAAAATGCCCTATATGGAAATCCATACTTTCAATATGA-
1 TATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATATGGAAATCCATACTTTCAATATGAT
7043875 TTTCTTTATCATTTAACACACTCAGTGCTCCATATGGAAATCTATACACTCAG
66 TTTC-TTATCATTTAACACACTCAGTGCTCCATATGGAAATCTATACACTCAG
* *
7043928 TATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGAT
1 TATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATATGGAAATCCATACTTTCAATATGAT
*
7043993 TTTCTTATCATTTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAG
66 TTTCTTATCATTTAACACACTCAGTGCTCCATATGGAAATCTATACACTCAG
* *
7044045 TATGATTTCCTTACCATTTTTAGCACACAAAGTGCC
1 TATGATTTCCTTACCA-TTTTAGCACATAAAATGCC
7044081 ATTCAGTAAT
Statistics
Matches: 144, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
117 123 0.85
118 21 0.15
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (117 bp):
TATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATATGGAAATCCATACTTTCAATATGAT
TTTCTTATCATTTAACACACTCAGTGCTCCATATGGAAATCTATACACTCAG
Found at i:7045382 original size:64 final size:64
Alignment explanation
Indices: 7045280--7045410 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
7045270 TCTCTGCATC
7045280 AAGAAGCATTGTGTAGATGTTATCTAAGGACAGCGTTTCCCTCATGGAGGTTATAACTACCATG
1 AAGAAGCATTGTGTAGATGTTATCTAAGGACAGCGTTTCCCTCATGGAGGTTATAACTACCATG
*
7045344 AAGAAGCATTGTGTAGATGTTATCTAAGGACAGTGTTTCCCTCATGGAGGTTATAACTACCATG
1 AAGAAGCATTGTGTAGATGTTATCTAAGGACAGCGTTTCCCTCATGGAGGTTATAACTACCATG
7045408 AAG
1 AAG
7045411 GGTTGGTATT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (64 bp):
AAGAAGCATTGTGTAGATGTTATCTAAGGACAGCGTTTCCCTCATGGAGGTTATAACTACCATG
Found at i:7047313 original size:60 final size:61
Alignment explanation
Indices: 7047215--7047336 Score: 219
Period size: 60 Copynumber: 2.0 Consensus size: 61
7047205 AAATTAGCCG
* *
7047215 TTGATGTACAAAAGTTGGGTTCGACTTAAACTGAAAACAAATTCACCC-TTTTTCACATTT
1 TTGAAGTACAAAAGTTGGGTTCGACGTAAACTGAAAACAAATTCACCCTTTTTTCACATTT
7047275 TTGAAGTACAAAAGTTGGGTTCGACGTAAACTGAAAACAAATTCACCCTTTTTTCACATTT
1 TTGAAGTACAAAAGTTGGGTTCGACGTAAACTGAAAACAAATTCACCCTTTTTTCACATTT
7047336 T
1 T
7047337 AATGTTTCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
60 46 0.78
61 13 0.22
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (61 bp):
TTGAAGTACAAAAGTTGGGTTCGACGTAAACTGAAAACAAATTCACCCTTTTTTCACATTT
Found at i:7048500 original size:43 final size:43
Alignment explanation
Indices: 7048418--7048771 Score: 345
Period size: 43 Copynumber: 8.2 Consensus size: 43
7048408 ATTTTTTATT
* * *
7048418 TTTATAATAGATGTCTCTAATTTTTTTCAATCCCACTTTTTAAA
1 TTTATAATTGATGCCTCTAA-TTTTTTCAATCCCACTTTTTACA
* * * * *
7048462 TTTATAACTGATGCTTTTAATTTTTTCAATCCCACTTTTCATA
1 TTTATAATTGATGCCTCTAATTTTTTCAATCCCACTTTTTACA
* * * * *
7048505 TTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACC
1 TTTATAATTGATGCCTCTAATTTTTTCAATCCCACTTTTTACA
* *
7048548 TTTATAATTGA-GACCCCTAATTTTTTCAATCCCACTTTTTAAA
1 TTTATAATTGATG-CCTCTAATTTTTTCAATCCCACTTTTTACA
* * * * * *
7048591 TTTATAACTCATGCTTTTAATTTTTTCAATCCCACTTTTCATA
1 TTTATAATTGATGCCTCTAATTTTTTCAATCCCACTTTTTACA
* * * * *
7048634 TTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACC
1 TTTATAATTGATGCCTCTAATTTTTTCAATCCCACTTTTTACA
* * * * *
7048677 TTTACAATTGA-GACCCCTAATTTTTTTAATCTCACTTTTTACT
1 TTTATAATTGATG-CCTCTAATTTTTTCAATCCCACTTTTTACA
* * *
7048720 TTTATAGTTGATGCC-CTTAATTTTTTCAATCTCACTTTTTACT
1 TTTATAATTGATGCCTC-TAATTTTTTCAATCCCACTTTTTACA
7048763 TTTATAATT
1 TTTATAATT
7048772 TAGACTCCTA
Statistics
Matches: 254, Mismatches: 51, Indels: 11
0.80 0.16 0.03
Matches are distributed among these distances:
42 3 0.01
43 234 0.92
44 17 0.07
ACGTcount: A:0.26, C:0.20, G:0.05, T:0.49
Consensus pattern (43 bp):
TTTATAATTGATGCCTCTAATTTTTTCAATCCCACTTTTTACA
Found at i:7048628 original size:21 final size:21
Alignment explanation
Indices: 7048565--7048629 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
7048555 TTGAGACCCC
7048565 TAATTTTTTCAATCCCACTTTT
1 TAATTTTTTCAATCCCAC-TTT
* * *
7048587 TAAATTTAT-AA-CTCATGCTTT
1 TAATTTTTTCAATCCCA--CTTT
7048608 TAATTTTTTCAATCCCACTTT
1 TAATTTTTTCAATCCCACTTT
7048629 T
1 T
7048630 CATATTTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
20 3 0.09
21 17 0.52
22 10 0.30
23 3 0.09
ACGTcount: A:0.26, C:0.20, G:0.02, T:0.52
Consensus pattern (21 bp):
TAATTTTTTCAATCCCACTTT
Found at i:7048786 original size:129 final size:129
Alignment explanation
Indices: 7048434--7048771 Score: 543
Period size: 129 Copynumber: 2.6 Consensus size: 129
7048424 ATAGATGTCT
7048434 CTAATTTTTTTCAATCCCACTTTTTAAATTTATAACTGATGCTTTTAATTTTTTCAATCCCACTT
1 CTAATTTTTTT-AATCCCACTTTTTAAATTTATAACTGATGCTTTTAATTTTTTCAATCCCACTT
*
7048499 TTCATATTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACCTTTATAATTGAGACCC
65 TTCATATTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACCTTTACAATTGAGACCC
* *
7048564 CTAATTTTTTCAATCCCACTTTTTAAATTTATAACTCATGCTTTTAATTTTTTCAATCCCACTTT
1 CTAATTTTTTTAATCCCACTTTTTAAATTTATAACTGATGCTTTTAATTTTTTCAATCCCACTTT
7048629 TCATATTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACCTTTACAATTGAGACCC
66 TCATATTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACCTTTACAATTGAGACCC
* ** ** ** *
7048693 CTAATTTTTTTAATCTCACTTTTTACTTTTATAGTTGATGCCCTTAATTTTTTCAATCTCACTTT
1 CTAATTTTTTTAATCCCACTTTTTAAATTTATAACTGATGCTTTTAATTTTTTCAATCCCACTTT
*
7048758 TTACT-TTTATAATT
66 TCA-TATTTATAATT
7048772 TAGACTCCTA
Statistics
Matches: 193, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
129 182 0.94
130 11 0.06
ACGTcount: A:0.26, C:0.20, G:0.05, T:0.49
Consensus pattern (129 bp):
CTAATTTTTTTAATCCCACTTTTTAAATTTATAACTGATGCTTTTAATTTTTTCAATCCCACTTT
TCATATTTATAATTGAGGCCTCTAATTTCTTCAATCTCACATTTTACCTTTACAATTGAGACCC
Found at i:7048933 original size:153 final size:153
Alignment explanation
Indices: 7048753--7049059 Score: 596
Period size: 153 Copynumber: 2.0 Consensus size: 153
7048743 TTTCAATCTC
7048753 ACTTTTTACTTTTATAATTTAGACTCCTAATTTCATCATTTTCTAAGATTTATTAATATAATATT
1 ACTTTTTACTTTTATAATTTAGACTCCTAATTTCATCATTTTCTAAGATTTATTAATATAATATT
7048818 AAATTAATTGTTCAAAGTAATAGAATATATTTTTGCTCTAGAATGACTTGTTTTTTTAGTTTCAC
66 AAATTAATTGTTCAAAGTAATAGAATATATTTTTGCTCTAGAATGACTTGTTTTTTTAGTTTCAC
7048883 TCATGATCCCGAAAATATCCAAT
131 TCATGATCCCGAAAATATCCAAT
*
7048906 ACTTTTTACTTTTATAATTTAGACTCCTAATTTCATCATTTTCTAAGATTTATTAATGTAATATT
1 ACTTTTTACTTTTATAATTTAGACTCCTAATTTCATCATTTTCTAAGATTTATTAATATAATATT
*
7048971 AAATTAATTGTTCAAAGTAATAGAATATATTTTTGTTCTAGAATGACTTGTTTTTTTAGTTTCAC
66 AAATTAATTGTTCAAAGTAATAGAATATATTTTTGCTCTAGAATGACTTGTTTTTTTAGTTTCAC
7049036 TCATGATCCCGAAAATATCCAAT
131 TCATGATCCCGAAAATATCCAAT
7049059 A
1 A
7049060 TGATTTTAAA
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (153 bp):
ACTTTTTACTTTTATAATTTAGACTCCTAATTTCATCATTTTCTAAGATTTATTAATATAATATT
AAATTAATTGTTCAAAGTAATAGAATATATTTTTGCTCTAGAATGACTTGTTTTTTTAGTTTCAC
TCATGATCCCGAAAATATCCAAT
Found at i:7049144 original size:51 final size:51
Alignment explanation
Indices: 7049072--7049181 Score: 204
Period size: 51 Copynumber: 2.2 Consensus size: 51
7049062 ATTTTAAAAC
7049072 ATATACTA-CCTTATATTCAACTATTACGAATTCACCCATATATATATATAT
1 ATATA-TATCCTTATATTCAACTATTACGAATTCACCCATATATATATATAT
7049123 ATATATATCCTTATATTCAACTATTACGAATTCACCCATATATATATATAT
1 ATATATATCCTTATATTCAACTATTACGAATTCACCCATATATATATATAT
7049174 ATATATAT
1 ATATATAT
7049182 ATATATATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
50 2 0.03
51 56 0.97
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.41
Consensus pattern (51 bp):
ATATATATCCTTATATTCAACTATTACGAATTCACCCATATATATATATAT
Found at i:7049167 original size:2 final size:2
Alignment explanation
Indices: 7049160--7049196 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7049150 GAATTCACCC
7049160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7049197 AAAGAGAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7049676 original size:2 final size:2
Alignment explanation
Indices: 7049665--7049703 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7049655 TAAGCAAATG
7049665 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7049704 GAGCACTGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7053399 original size:21 final size:18
Alignment explanation
Indices: 7053352--7053390 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
7053342 TAAATATTGA
7053352 TTTA-AATAATATCATTT
1 TTTATAATAATATCATTT
7053369 TTTATAATAATATCATTT
1 TTTATAATAATATCATTT
7053387 TTTA
1 TTTA
7053391 ATCTCATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATAATAATATCATTT
Found at i:7054234 original size:29 final size:29
Alignment explanation
Indices: 7054201--7054259 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
7054191 AATCTAAGAC
7054201 GTGCATAATCAATCTGAGACACAAATTAT
1 GTGCATAATCAATCTGAGACACAAATTAT
* *
7054230 GTGCATAGTCAATCTGAGGCACAAATTAT
1 GTGCATAATCAATCTGAGACACAAATTAT
7054259 G
1 G
7054260 GGACATAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (29 bp):
GTGCATAATCAATCTGAGACACAAATTAT
Found at i:7056224 original size:227 final size:227
Alignment explanation
Indices: 7055829--7056282 Score: 847
Period size: 227 Copynumber: 2.0 Consensus size: 227
7055819 GGAGATTCTT
*
7055829 ATCCCTAATTCATTCACATGATGTAAACAGTGATGAAAAGAGAGGTATGTTAAGCAATGCGTTTA
1 ATCCCTAATTCATTCACATGATGTAAACAATGATGAAAAGAGAGGTATGTTAAGCAATGCGTTTA
* *
7055894 ATGATCATTGTGTTTAGTGTGCCGAACAACATAAGTAACCTATATGAGAGTGAAGTGTGGTTGTT
66 ATGATCATTGTATTTAGTGTGCCGAACAACATAAGTAACCTATATGAGAGTAAAGTGTGGTTGTT
*
7055959 TTAAGGAGACGAATGGAGCATAGTTCTTGTATAACCATGATATGTCCACGACTATATGGACATAA
131 TTAAGGAGACGAATGGAGCATAGTTCTTGTAGAACCATGATATGTCCACGACTATATGGACATAA
7056024 CTATGAAAACTAAAAATCTTGTCATTGAGATA
196 CTATGAAAACTAAAAATCTTGTCATTGAGATA
*
7056056 ATCCCTAATTCGTTCACATGATGTAAACAATGATGAAAAGAG-GGATATGTTAAGCAATGCGTTT
1 ATCCCTAATTCATTCACATGATGTAAACAATGATGAAAAGAGAGG-TATGTTAAGCAATGCGTTT
7056120 AATGATCATTGTATTTAGTGTGCCGAACAACATAAGTAACCTATATGAGAGTAAAGTGTGGTTGT
65 AATGATCATTGTATTTAGTGTGCCGAACAACATAAGTAACCTATATGAGAGTAAAGTGTGGTTGT
7056185 TTTAAGGAGACGAATGGAGCATAGTTCTTGTAGAACCATGATATGTCCACGACTATATGGACATA
130 TTTAAGGAGACGAATGGAGCATAGTTCTTGTAGAACCATGATATGTCCACGACTATATGGACATA
7056250 ACTATGAAAACTAAAAATCTTGTCATTGAGATA
195 ACTATGAAAACTAAAAATCTTGTCATTGAGATA
7056283 GTTGTATGAG
Statistics
Matches: 221, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
226 2 0.01
227 219 0.99
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (227 bp):
ATCCCTAATTCATTCACATGATGTAAACAATGATGAAAAGAGAGGTATGTTAAGCAATGCGTTTA
ATGATCATTGTATTTAGTGTGCCGAACAACATAAGTAACCTATATGAGAGTAAAGTGTGGTTGTT
TTAAGGAGACGAATGGAGCATAGTTCTTGTAGAACCATGATATGTCCACGACTATATGGACATAA
CTATGAAAACTAAAAATCTTGTCATTGAGATA
Found at i:7060692 original size:22 final size:22
Alignment explanation
Indices: 7060638--7060693 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
7060628 CGATTCTGAT
7060638 TATCGCATTGCGATTTTCCAAA
1 TATCGCATTGCGATTTTCCAAA
* * *
7060660 T-TCGCGTTGCGATTTTCCGAC
1 TATCGCATTGCGATTTTCCAAA
*
7060681 TATCGCAATGCGA
1 TATCGCATTGCGA
7060694 ATATGTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (22 bp):
TATCGCATTGCGATTTTCCAAA
Found at i:7060707 original size:20 final size:20
Alignment explanation
Indices: 7060682--7060724 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
7060672 TTTTCCGACT
7060682 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
7060702 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
7060722 ATC
1 ATC
7060725 ATAATGCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:7060730 original size:20 final size:20
Alignment explanation
Indices: 7060686--7060733 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
7060676 CCGACTATCG
*
7060686 CAATGCGAATATGTAAATCG
1 CAATGCGAATATGTAAATCA
7060706 CAATGCGAATATGTAAATCA
1 CAATGCGAATATGTAAATCA
*
7060726 TAATGCGA
1 CAATGCGA
7060734 TTCTGACTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.25
Consensus pattern (20 bp):
CAATGCGAATATGTAAATCA
Found at i:7060755 original size:20 final size:20
Alignment explanation
Indices: 7060730--7060769 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7060720 AAATCATAAT
7060730 GCGATTCTGACTGTCGCAAC
1 GCGATTCTGACTGTCGCAAC
7060750 GCGATTCTGACTGTCGCAAC
1 GCGATTCTGACTGTCGCAAC
7060770 ACTGAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25
Consensus pattern (20 bp):
GCGATTCTGACTGTCGCAAC
Found at i:7061622 original size:24 final size:24
Alignment explanation
Indices: 7061590--7061643 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7061580 GTATTCGAAA
7061590 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
7061614 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
7061638 TTTGAT
1 TTTGAT
7061644 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:7063900 original size:6 final size:6
Alignment explanation
Indices: 7063889--7063922 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7063879 AGAAAAAGGC
*
7063889 AATCAA AATCAA AATCGA AATCAA AATCAA AATC
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATC
7063923 TCAATCACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.62, C:0.18, G:0.03, T:0.18
Consensus pattern (6 bp):
AATCAA
Found at i:7063928 original size:18 final size:18
Alignment explanation
Indices: 7063887--7063929 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7063877 CAAGAAAAAG
7063887 GCAATCAAAATCAAAATC
1 GCAATCAAAATCAAAATC
*
7063905 GAAATCAAAATCAAAATC
1 GCAATCAAAATCAAAATC
*
7063923 TCAATCA
1 GCAATCA
7063930 CAACCGGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.19
Consensus pattern (18 bp):
GCAATCAAAATCAAAATC
Found at i:7064242 original size:140 final size:140
Alignment explanation
Indices: 7063989--7064258 Score: 477
Period size: 140 Copynumber: 1.9 Consensus size: 140
7063979 AAACATTGTA
7063989 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTGGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTGGAACATTGCTA
* * * *
7064054 TGATCTATTCAGTTGTTATCACTTATTACACATTCATCTGAATTTCGCAACGCGAATTTGACTAT
66 TGATATATTCAATTGTTATCACTTATTACACATTCATCTGAATATCGCAACGCGAATTTAACTAT
7064119 TATGTGTATT
131 TATGTGTATT
* *
7064129 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTGGAACATTGCTA
*
7064194 TGATATATTCAATTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTAACTAT
66 TGATATATTCAATTGTTATCACTTATTACACATTCATCTGAATATCGCAACGCGAATTTAACTAT
7064259 CGCAATGCGA
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 123 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTGGAACATTGCTA
TGATATATTCAATTGTTATCACTTATTACACATTCATCTGAATATCGCAACGCGAATTTAACTAT
TATGTGTATT
Found at i:7064259 original size:20 final size:20
Alignment explanation
Indices: 7064229--7064482 Score: 163
Period size: 20 Copynumber: 13.7 Consensus size: 20
7064219 TTACACATTC
*
7064229 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7064249 ATTTAACTATCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
* *
7064269 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* *
7064288 A----A-AATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
* *
7064303 ATTTGTCTATCGCAACGCTA
1 ATTTGACTATCGCAACGCGA
7064323 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7064343 ATTTGATTATCGCAACG-GCT
1 ATTTGACTATCGCAACGCG-A
*
7064363 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGCGA
7064383 A----A--ATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7064397 ATTTGATTATCGCAACAG-GT
1 ATTTGACTATCGCAAC-GCGA
* *
7064417 ATTTGACTATTGCAACGAGA
1 ATTTGACTATCGCAACGCGA
* *
7064437 A----A--ATCGCAAAGCGT
1 ATTTGACTATCGCAACGCGA
*
7064451 ATTAGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
7064471 A-TTGACTTTCGC
1 ATTTGACTATCGC
7064483 GTTGCGGTTT
Statistics
Matches: 180, Mismatches: 32, Indels: 45
0.70 0.12 0.18
Matches are distributed among these distances:
14 30 0.17
15 3 0.02
16 2 0.01
18 2 0.01
19 13 0.07
20 128 0.71
21 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:7064390 original size:94 final size:94
Alignment explanation
Indices: 7064229--7064433 Score: 256
Period size: 94 Copynumber: 2.2 Consensus size: 94
7064219 TTACACATTC
* * *
7064229 ATTTGAATATCGCAACGCGAATTTAACTATCGCAATGCGAATTTGATTATCGCAACTCAAAAATC
1 ATTTGACTATCGCAACGCGAATTTAACTATCGCAAGGCGAATTTGACTATCGCAACTCAAAAATC
7064294 GCAACACGAATTTG-TCTATCGCAAC-GCT
66 GCAACACGAATTTGAT-TATCGCAACAGCT
* * * *
7064322 AATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGC-TATTTGACTATCGCAAC-GAGAAA
1 -ATTTGACTATCGCAACGCGAATTTAACTATCGCAA-GGCGAATTTGACTATCGCAACTCA-AAA
* *
7064385 ATCGCAACGCGAATTTGATTATCGCAACAGGT
63 ATCGCAACACGAATTTGATTATCGCAACAGCT
*
7064417 ATTTGACTATTGCAACG
1 ATTTGACTATCGCAACG
7064434 AGAAAATCGC
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
93 1 0.01
94 91 0.94
95 5 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (94 bp):
ATTTGACTATCGCAACGCGAATTTAACTATCGCAAGGCGAATTTGACTATCGCAACTCAAAAATC
GCAACACGAATTTGATTATCGCAACAGCT
Found at i:7064391 original size:54 final size:53
Alignment explanation
Indices: 7064331--7064467 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 53
7064321 TAATTTGACT
7064331 ATCGCAACGCGAATTTGATTATCGCAACGGCTATTTGACTATCGCAACGAGAAA
1 ATCGCAACGCGAATTTGATTATCGCAACGG-TATTTGACTATCGCAACGAGAAA
*
7064385 ATCGCAACGCGAATTTGATTATCGCAACAGGTATTTGACTATTGCAACGAGAAA
1 ATCGCAACGCGAATTTGATTATCGCAAC-GGTATTTGACTATCGCAACGAGAAA
* * * *
7064439 ATCGCAAAGCGTATTAGACTATCGCAACG
1 ATCGCAACGCGAATTTGATTATCGCAACG
7064468 CGAATTGACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.96
55 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (53 bp):
ATCGCAACGCGAATTTGATTATCGCAACGGTATTTGACTATCGCAACGAGAAA
Found at i:7064501 original size:20 final size:20
Alignment explanation
Indices: 7064472--7064529 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
7064462 GCAACGCGAA
*
7064472 TTGACTTTCGCGTTGCGGTT
1 TTGACTTTCGCGTTGCGATT
* *
7064492 TTGTCTTTCGCATTGCGATT
1 TTGACTTTCGCGTTGCGATT
* *
7064512 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCGTTGCGA
7064530 AAGTGTACCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.10, C:0.17, G:0.28, T:0.45
Consensus pattern (20 bp):
TTGACTTTCGCGTTGCGATT
Found at i:7064688 original size:14 final size:14
Alignment explanation
Indices: 7064628--7064689 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
7064618 CACAAATAAG
*
7064628 AATTATTTACACATC
1 AATT-TTTACAAATC
**
7064643 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
7064658 AACTTTTACAAATC
1 AATTTTTACAAATC
*
7064672 AATTTTTATAAATC
1 AATTTTTACAAATC
7064686 AATT
1 AATT
7064690 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 12 0.32
16 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:7066191 original size:42 final size:42
Alignment explanation
Indices: 7066112--7066204 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
7066102 CCTCTTCAAC
* * *
7066112 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
* * **
7066154 GATGATAGGGGCCTCTTGAACGATAGGG-GAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-GGGAGAGGACTCTTGAGG
7066196 GATGACAGG
1 GATGACAGG
7066205 TGAATCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
Found at i:7066726 original size:20 final size:20
Alignment explanation
Indices: 7066690--7066755 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
7066680 GAAACTTAAA
7066690 ATCGCAACACG--AATGACT
1 ATCGCAACACGAAAATGACT
**
7066708 ATCGCAATGCGAAAATGACT
1 ATCGCAACACGAAAATGACT
**
7066728 ATCGCAACACGAATTTGACT
1 ATCGCAACACGAAAATGACT
7066748 ATCGCAAC
1 ATCGCAAC
7066756 GAGAGAATCG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.22
20 31 0.77
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.20
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:7066825 original size:20 final size:20
Alignment explanation
Indices: 7066800--7066886 Score: 165
Period size: 20 Copynumber: 4.3 Consensus size: 20
7066790 CGATTCTTTT
7066800 GTTGCGATAGTCATTTTCGC
1 GTTGCGATAGTCATTTTCGC
7066820 GTTGCGATAGTCATTTTCGC
1 GTTGCGATAGTCATTTTCGC
7066840 GTTGCGATAGTCATTTTCGC
1 GTTGCGATAGTCATTTTCGC
*
7066860 GTTGCAATAGTCATTTTCGC
1 GTTGCGATAGTCATTTTCGC
7066880 GTTGCGA
1 GTTGCGA
7066887 AAGTAAACTA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGC
Found at i:7066825 original size:34 final size:37
Alignment explanation
Indices: 7066780--7066878 Score: 123
Period size: 40 Copynumber: 2.6 Consensus size: 37
7066770 GCGATTTTCA
*
7066780 TTTCGCATTGCGAT-TC-TTTT-GTTGCGATAGTCAT
1 TTTCGCGTTGCGATATCATTTTCGTTGCGATAGTCAT
7066814 TTTCGCGTTGCGATAGTCATTTTCGCGTTGCGATAGTCAT
1 TTTCGCGTTGCGATA-TCATTTT--CGTTGCGATAGTCAT
*
7066854 TTTCGCGTTGCAATAGTCATTTTCG
1 TTTCGCGTTGCGATA-TCATTTTCG
7066879 CGTTGCGAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
34 13 0.23
36 2 0.04
37 4 0.07
38 2 0.04
40 36 0.63
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.43
Consensus pattern (37 bp):
TTTCGCGTTGCGATATCATTTTCGTTGCGATAGTCAT
Found at i:7068823 original size:20 final size:20
Alignment explanation
Indices: 7068800--7068867 Score: 93
Period size: 20 Copynumber: 3.5 Consensus size: 20
7068790 TCTGAAACTT
7068800 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
7068820 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * *
7068840 ACTATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
7068859 AAAATCGCA
1 AAAATCGCA
7068868 TTGCGATTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 7 0.17
20 35 0.83
ACGTcount: A:0.50, C:0.24, G:0.15, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:7069499 original size:20 final size:20
Alignment explanation
Indices: 7069469--7069561 Score: 150
Period size: 20 Copynumber: 4.7 Consensus size: 20
7069459 GCGCTTTGAA
*
7069469 AATCGCATTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
* *
7069489 CATCGCGTTGCGACAGTCAG
1 AATCGCGTTGCGATAGTCAG
7069509 AATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
*
7069529 AATCTCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
7069549 AATCGCGTTGCGA
1 AATCGCGTTGCGA
7069562 ATCTGGAAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 66 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGATAGTCAG
Found at i:7069580 original size:40 final size:38
Alignment explanation
Indices: 7069494--7069603 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 38
7069484 GTCAGCATCG
* *
7069494 CGTTGCGACAGTCAGAATCGCGTTGCGATAGTCAGAATCT
1 CGTTGCGATAGTCAGAATCGCGTTGCGA-A-TCAGAAACT
*
7069534 CGTTGCGATAGTCAGAATCGCGTTGCGAATCTGGAAACT
1 CGTTGCGATAGTCAGAATCGCGTTGCGAATC-AGAAACT
*
7069573 -GATTTGCGATA-CCAGAGATCGCGTTGCGAAT
1 CG--TTGCGATAGTCAGA-ATCGCGTTGCGAAT
7069604 AATCGATCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 3 0.05
39 10 0.16
40 49 0.79
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (38 bp):
CGTTGCGATAGTCAGAATCGCGTTGCGAATCAGAAACT
Found at i:7069580 original size:60 final size:60
Alignment explanation
Indices: 7069470--7069601 Score: 144
Period size: 60 Copynumber: 2.2 Consensus size: 60
7069460 CGCTTTGAAA
* * * * *
7069470 ATCGCATTGCGATAGTCAGCATCGCGTTGCGACAGTCAGAATCGCGTTGCGATAGTCAGA-
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAAACGAGTTGCGATA-CCAGAG
* * *
7069530 ATCTCGTTGCGATAGTCAGAATCGCGTTGCGA-A-TCTGGAAACTGATTTGCGATACCAGAG
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGACAGTC-AGAAAC-GAGTTGCGATACCAGAG
7069590 ATCGCGTTGCGA
1 ATCGCGTTGCGA
7069602 ATAATCGATC
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
58 2 0.03
59 9 0.15
60 49 0.82
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (60 bp):
ATCGCGTTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAAACGAGTTGCGATACCAGAG
Found at i:7070236 original size:35 final size:38
Alignment explanation
Indices: 7070197--7070281 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 38
7070187 TTCATTAAAC
*
7070197 ATTTTTAT-ATTTTCAA-TTTTATAAA-AAAA-ATATAA
1 ATTTTTATAAATTT-AATTTTTATAAAGAAAATATATAA
*
7070232 A-TTTTATAAATTTAATTTTTTTAAAGAAAATATATAA
1 ATTTTTATAAATTTAATTTTTATAAAGAAAATATATAA
*
7070269 ATATTATATAAAT
1 AT-TTTTATAAAT
7070282 ATTTTCCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
34 8 0.20
35 13 0.32
36 4 0.10
37 7 0.17
39 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (38 bp):
ATTTTTATAAATTTAATTTTTATAAAGAAAATATATAA
Done.