Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 39
Found at i:7073877 original size:23 final size:23
Alignment explanation
Indices: 7073849--7073935 Score: 84
Period size: 23 Copynumber: 3.8 Consensus size: 23
7073839 CACTAGATGC
* *
7073849 TAATATCATGCTTTAATTGACGA
1 TAATATTATGCTTTAATGGACGA
* * * *
7073872 TTATATTATGCATTAACGGATGA
1 TAATATTATGCTTTAATGGACGA
**
7073895 TAATATTATGCTTTAATAAACGA
1 TAATATTATGCTTTAATGGACGA
* *
7073918 GAATATTATGCATTAATG
1 TAATATTATGCTTTAATG
7073936 ATTTCTTGAT
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (23 bp):
TAATATTATGCTTTAATGGACGA
Found at i:7073924 original size:46 final size:46
Alignment explanation
Indices: 7073844--7073933 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
7073834 TAATTCACTA
* ** **
7073844 GATGCTAATATCATGCTTTAATTGACGATTATATTATGCATTAACG
1 GATGATAATATCATGCTTTAATAAACGAGAATATTATGCATTAACG
*
7073890 GATGATAATATTATGCTTTAATAAACGAGAATATTATGCATTAA
1 GATGATAATATCATGCTTTAATAAACGAGAATATTATGCATTAA
7073934 TGATTTCTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (46 bp):
GATGATAATATCATGCTTTAATAAACGAGAATATTATGCATTAACG
Found at i:7080080 original size:56 final size:58
Alignment explanation
Indices: 7080020--7080144 Score: 218
Period size: 56 Copynumber: 2.2 Consensus size: 58
7080010 ACATACACCG
*
7080020 CACACAAATACATAGATACACACATACCATTTTTTCCTTGCAATTCATATATGC-A-A
1 CACACAAATACATAGATACACACATACCATTTTTTCCTTACAATTCATATATGCGATA
*
7080076 CACACAAATACATGGATACACACATACCATTTTTTCCTTACAATTCATATATGCGATA
1 CACACAAATACATAGATACACACATACCATTTTTTCCTTACAATTCATATATGCGATA
7080134 CACACAAATAC
1 CACACAAATAC
7080145 CAGTACCTCT
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
56 52 0.80
57 1 0.02
58 12 0.18
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.29
Consensus pattern (58 bp):
CACACAAATACATAGATACACACATACCATTTTTTCCTTACAATTCATATATGCGATA
Found at i:7089563 original size:21 final size:20
Alignment explanation
Indices: 7089502--7089559 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
7089492 ATTAGCACAG
7089502 AACCGG-AAGAACCGGTTGAA
1 AACCGGTAA-AACCGGTTGAA
* *
7089522 AACCGGGGT-GAACCGGCTGAA
1 AACC--GGTAAAACCGGTTGAA
7089543 AACCGGTAAAACCGGTT
1 AACCGGTAAAACCGGTT
7089560 TGAACTGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.10
20 11 0.37
21 14 0.47
22 2 0.07
ACGTcount: A:0.34, C:0.22, G:0.31, T:0.12
Consensus pattern (20 bp):
AACCGGTAAAACCGGTTGAA
Found at i:7089825 original size:24 final size:24
Alignment explanation
Indices: 7089791--7089844 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
7089781 TAGAAGTTCG
*
7089791 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAACCTAAAATTTGAGCTCA
7089815 ATTGAAACCTAAAATTTGAGCTCA
1 ATTGAAACCTAAAATTTGAGCTCA
7089839 ATTGAA
1 ATTGAA
7089845 GCGAAAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (24 bp):
ATTGAAACCTAAAATTTGAGCTCA
Found at i:7091785 original size:2 final size:2
Alignment explanation
Indices: 7091778--7091811 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7091768 ATCTTTTTGA
7091778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7091812 TATTTCATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7093264 original size:24 final size:23
Alignment explanation
Indices: 7093229--7093274 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
7093219 TACCTTTGTG
7093229 TTTTATTAATAAA-AAATAATTAA
1 TTTTATTAATAAATAAA-AATTAA
7093252 TTTTATTTAATAAATAAAAATTA
1 TTTTA-TTAATAAATAAAAATTA
7093275 TAATAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 13 0.62
25 3 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTTATTAATAAATAAAAATTAA
Found at i:7106906 original size:10 final size:10
Alignment explanation
Indices: 7106891--7106924 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
7106881 CACTGCACAG
7106891 ACCATGCTGC
1 ACCATGCTGC
7106901 ACCATGCTG-
1 ACCATGCTGC
7106910 ACCATGCTGC
1 ACCATGCTGC
7106920 -CCATG
1 ACCATG
7106925 TCAGGTGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21
Consensus pattern (10 bp):
ACCATGCTGC
Found at i:7116455 original size:22 final size:20
Alignment explanation
Indices: 7116414--7116456 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
7116404 ACACTACCAC
*
7116414 CATTCCATTTTCACATCATT
1 CATTCCATTTTCACAACATT
7116434 CATTCCATTTTTCCACAACATT
1 CATTCCA-TTTT-CACAACATT
7116456 C
1 C
7116457 TCATTTGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.42
Consensus pattern (20 bp):
CATTCCATTTTCACAACATT
Found at i:7117094 original size:43 final size:43
Alignment explanation
Indices: 7117033--7117127 Score: 181
Period size: 43 Copynumber: 2.2 Consensus size: 43
7117023 CATTATTCGT
7117033 GTATATATTAAAACATCATCCAATGTACATATTTTTACTCCAC
1 GTATATATTAAAACATCATCCAATGTACATATTTTTACTCCAC
*
7117076 GTATATATTAAAACATCATCCAATGTATATATTTTTACTCCAC
1 GTATATATTAAAACATCATCCAATGTACATATTTTTACTCCAC
7117119 GTATATATT
1 GTATATATT
7117128 TTTATTTGTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (43 bp):
GTATATATTAAAACATCATCCAATGTACATATTTTTACTCCAC
Found at i:7117103 original size:24 final size:24
Alignment explanation
Indices: 7117032--7117108 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
7117022 CCATTATTCG
7117032 TGTATATATTAAAACATCATCCAA
1 TGTATATATTAAAACATCATCCAA
* ***
7117056 TGTACATATT--TTTA-C-TCC-A
1 TGTATATATTAAAACATCATCCAA
*
7117075 CGTATATATTAAAACATCATCCAA
1 TGTATATATTAAAACATCATCCAA
7117099 TGTATATATT
1 TGTATATATT
7117109 TTTACTCCAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 9 0.24
20 3 0.08
21 2 0.05
22 2 0.05
23 3 0.08
24 19 0.50
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (24 bp):
TGTATATATTAAAACATCATCCAA
Found at i:7117285 original size:58 final size:59
Alignment explanation
Indices: 7117190--7117300 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 59
7117180 TATGATCATT
* * *
7117190 ATTTTAATTTAGTCCTTAAATTTTTAAATGTTAAATTTTA-CCCCTAATTATGAATATC
1 ATTTTAAATTAGTCCTTAAATTTTTAAATGTTAAATTTCATCCCCAAATTATGAATATC
* *
7117248 ATTTTAAATTAGTCC-TCAATTTTTGAACAT-TTCAATTTCATCCCCAAATTATG
1 ATTTTAAATTAGTCCTTAAATTTTT-AA-ATGTTAAATTTCATCCCCAAATTATG
7117301 GCCTTGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 8 0.18
58 24 0.53
59 13 0.29
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.46
Consensus pattern (59 bp):
ATTTTAAATTAGTCCTTAAATTTTTAAATGTTAAATTTCATCCCCAAATTATGAATATC
Found at i:7118659 original size:60 final size:60
Alignment explanation
Indices: 7118543--7118687 Score: 152
Period size: 60 Copynumber: 2.4 Consensus size: 60
7118533 TAAAATTGTA
* * *
7118543 AATATTTCAATTTCATCATCAAACTATGACTATCATTCTAAATTAGTCCTTAAAC-TTTTG
1 AATATTTCAATTTCATC-TCAAATTATGACTATCATTCTAAATTAATCCTCAAACTTTTTG
* * * * *
7118603 CATATTTCAATTTCATCTCTAAATTATGAC-ACTCTTTCTAATTTAAT-CTCCGAACTTTTTT
1 AATATTTCAATTTCATCTC-AAATTATGACTA-TCATTCTAAATTAATCCT-CAAACTTTTTG
*
7118664 AATATTCCAATTTCATCTCAAATT
1 AATATTTCAATTTCATCTCAAATT
7118688 CATCCAAACA
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
59 5 0.07
60 45 0.63
61 21 0.30
ACGTcount: A:0.32, C:0.20, G:0.03, T:0.44
Consensus pattern (60 bp):
AATATTTCAATTTCATCTCAAATTATGACTATCATTCTAAATTAATCCTCAAACTTTTTG
Found at i:7125178 original size:20 final size:20
Alignment explanation
Indices: 7125149--7125187 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7125139 ATTTCACCAC
*
7125149 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
7125169 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
7125188 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:7127107 original size:18 final size:18
Alignment explanation
Indices: 7127084--7127118 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7127074 CATTTGATCC
*
7127084 TCTGGTCGTGCTTGTTCA
1 TCTGGTCGAGCTTGTTCA
*
7127102 TCTGGTGGAGCTTGTTC
1 TCTGGTCGAGCTTGTTC
7127119 CTCGTGCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.20, G:0.31, T:0.43
Consensus pattern (18 bp):
TCTGGTCGAGCTTGTTCA
Found at i:7132598 original size:22 final size:21
Alignment explanation
Indices: 7132556--7132595 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7132546 GAGTTTATTT
*
7132556 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7132577 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7132596 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7134220 original size:42 final size:42
Alignment explanation
Indices: 7134173--7134264 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
7134163 TAAACAATAA
7134173 CGGCGTTTATAGTAAAAACGCCGCAATATAGTAGACATGTAG
1 CGGCGTTTATAGTAAAAACGCCGCAATATAGTAGACATGTAG
7134215 CGGCGTTTATAGTAAAAACGCCGCAATATAGTAGACATGTAG
1 CGGCGTTTATAGTAAAAACGCCGCAATATAGTAGACATGTAG
7134257 CGGCGTTT
1 CGGCGTTT
7134265 TAGGCGGCGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (42 bp):
CGGCGTTTATAGTAAAAACGCCGCAATATAGTAGACATGTAG
Found at i:7135492 original size:52 final size:52
Alignment explanation
Indices: 7135427--7135585 Score: 291
Period size: 52 Copynumber: 3.1 Consensus size: 52
7135417 TACTGAACAA
7135427 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
* *
7135479 TATGTTGAAGACTGTTTATGCATAAGTACTTTAATTTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
*
7135531 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATATTG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
7135583 TAT
1 TAT
7135586 TTTGTTGTTA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (52 bp):
TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
Found at i:7138804 original size:21 final size:21
Alignment explanation
Indices: 7138741--7138831 Score: 60
Period size: 21 Copynumber: 4.3 Consensus size: 21
7138731 AGCGGAAAAT
*
7138741 GAAGCAAG-GGAAGTAGAGAGA
1 GAAGC-AGCGGAAGCAGAGAGA
* * * *
7138762 GCATCAACGGAAGCA-ACTAGA
1 GAAGCAGCGGAAGCAGA-GAGA
*
7138783 GTAGCAGCGGAAGCAGAGAGA
1 GAAGCAGCGGAAGCAGAGAGA
* * *
7138804 GAAGCAGTGGCAGCACAGAGA
1 GAAGCAGCGGAAGCAGAGAGA
*
7138825 GAGGCAG
1 GAAGCAG
7138832 TGACAGAACA
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
20 2 0.04
21 50 0.94
22 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.38, T:0.05
Consensus pattern (21 bp):
GAAGCAGCGGAAGCAGAGAGA
Found at i:7138832 original size:21 final size:21
Alignment explanation
Indices: 7138794--7138849 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
7138784 TAGCAGCGGA
* *
7138794 AGCAGAGAGAGAAGCAGTGGC
1 AGCACAGAGAGAAGCAGTGAC
*
7138815 AGCACAGAGAGAGGCAGTGAC
1 AGCACAGAGAGAAGCAGTGAC
* *
7138836 AGAACAAAGAGAAG
1 AGCACAGAGAGAAG
7138850 TAATATATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.38, T:0.04
Consensus pattern (21 bp):
AGCACAGAGAGAAGCAGTGAC
Found at i:7139380 original size:43 final size:43
Alignment explanation
Indices: 7139333--7139414 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
7139323 GTTTGTAGGA
*
7139333 AAAACGACGATAAAAATAAACATCTATTGCAGCGTTTGTGAAG
1 AAAACGACGATAAAAATAAACACCTATTGCAGCGTTTGTGAAG
* * * * * *
7139376 AAAACGCCGCTAAACATCAACGCCTATTGCGGCGTTTGT
1 AAAACGACGATAAAAATAAACACCTATTGCAGCGTTTGT
7139415 CTGCCAAATG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (43 bp):
AAAACGACGATAAAAATAAACACCTATTGCAGCGTTTGTGAAG
Found at i:7139438 original size:43 final size:43
Alignment explanation
Indices: 7139376--7139509 Score: 171
Period size: 43 Copynumber: 3.1 Consensus size: 43
7139366 GTTTGTGAAG
* *
7139376 AAAACGCCGCTAAACATCAACGCCTATTGCGGCGTTTGTCTGC
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGC
* * * * *
7139419 CAAATGCCGTTAAATATCAACACCTATTGCGGCGTTTTTTTGC
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGC
* * *
7139462 AAAACGCCGCTAAATATCAATACCTTTTGCGGCGTTTGT-TGA
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGC
7139504 AAAACG
1 AAAACG
7139510 TCGTAAACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 8 0.10
43 69 0.90
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGC
Found at i:7140463 original size:42 final size:42
Alignment explanation
Indices: 7140417--7140497 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
7140407 AATAACGGCG
*
7140417 TTTATAGTAAAAACGCCGTAATATAGTAGACATGTAGCGTCA
1 TTTATAGTAAAAACGCCGCAATATAGTAGACATGTAGCGTCA
*
7140459 TTTATAGTAAAAATGCCGCAATATAGTAGACATGTAGCG
1 TTTATAGTAAAAACGCCGCAATATAGTAGACATGTAGCG
7140498 GCGTTTTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (42 bp):
TTTATAGTAAAAACGCCGCAATATAGTAGACATGTAGCGTCA
Found at i:7141725 original size:52 final size:52
Alignment explanation
Indices: 7141660--7141818 Score: 309
Period size: 52 Copynumber: 3.1 Consensus size: 52
7141650 TACTGAATAA
7141660 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
*
7141712 TATGTTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
7141764 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
7141816 TAT
1 TAT
7141819 TTTGTTGTTA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 105 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (52 bp):
TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
Found at i:7145008 original size:21 final size:21
Alignment explanation
Indices: 7144984--7145039 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
7144974 ATGAAGCAAG
*
7144984 GGAAGCAGAGAGAGCATCAGC
1 GGAAGCAGAGAGAGCAACAGC
** *
7145005 GGAAGCAGCTAGAGTAACAGC
1 GGAAGCAGAGAGAGCAACAGC
7145026 GGAAGCAGAGAGAG
1 GGAAGCAGAGAGAG
7145040 AAGCAGTGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.39, C:0.16, G:0.39, T:0.05
Consensus pattern (21 bp):
GGAAGCAGAGAGAGCAACAGC
Found at i:7145600 original size:43 final size:43
Alignment explanation
Indices: 7145512--7145752 Score: 170
Period size: 43 Copynumber: 5.7 Consensus size: 43
7145502 ACATATTCTA
* * * *
7145512 CGGCGTTTATAGG-AAAATGCTGCTAAACATAAACATCT-TCTG
1 CGGCGTTTGTAGGAAAAACGCCGCTAAACATAAACACCTAT-TG
* * *
7145554 CGGCGTTTGTAGGAAAAACGCCGGTAAAAATAAACATCTATTG
1 CGGCGTTTGTAGGAAAAACGCCGCTAAACATAAACACCTATTG
* *
7145597 CGGCGTTTGT-GAAGAAAACGCCGCTAAACATCAACACCTATTG
1 CGGCGTTTGTAGGA-AAAACGCCGCTAAACATAAACACCTATTG
* ** ** * * * *
7145640 CGGCATTTGTCTGCCAAATGCCGTTAAATATCAACACCTATTG
1 CGGCGTTTGTAGGAAAAACGCCGCTAAACATAAACACCTATTG
*** * * * *
7145683 CGGCGTTT-TTTTACAAAACGCCGCTAAATATCAATACCTTTTG
1 CGGCGTTTGTAGGA-AAAACGCCGCTAAACATAAACACCTATTG
* *
7145726 CGGTGTTTGT-TGAAAAACGCCGC-AAAC
1 CGGCGTTTGTAGGAAAAACGCCGCTAAAC
7145753 TTTAGCGGTG
Statistics
Matches: 163, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.02
42 26 0.16
43 132 0.81
44 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (43 bp):
CGGCGTTTGTAGGAAAAACGCCGCTAAACATAAACACCTATTG
Found at i:7145623 original size:86 final size:84
Alignment explanation
Indices: 7145524--7145747 Score: 223
Period size: 86 Copynumber: 2.6 Consensus size: 84
7145514 GCGTTTATAG
* * * * *
7145524 GAAAATGCTGCTAAACATAAACATCTTCTGCGGCGTTTGTAGGAAAAACGCCGGTAAAAATAAAC
1 GAAAACGCCGCTAAACATCAACACCTT-TGCGGCGTTTGT-TGAAAAACGCCGGTAAAAATAAAC
*
7145589 ATCTATTGCGGCGTTTGTGAA
64 ACCTATTGCGGCGTTTGTGAA
* ** * * * *
7145610 GAAAACGCCGCTAAACATCAACACCTATTGCGGCATTTGTCTGCCAAATGCCGTTAAATATCAAC
1 GAAAACGCCGCTAAACATCAACACCT-TTGCGGCGTTTGT-TGAAAAACGCCGGTAAAAATAAAC
* **
7145675 ACCTATTGCGGCGTTTTTTTA
64 ACCTATTGCGGCGTTTGTGAA
* * * *
7145696 CAAAACGCCGCTAAATATCAATACCTTTTGCGGTGTTTGTTGAAAAACGCCG
1 GAAAACGCCGCTAAACATCAACACC-TTTGCGGCGTTTGTTGAAAAACGCCG
7145748 CAAACTTTAG
Statistics
Matches: 111, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
85 9 0.08
86 100 0.90
87 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (84 bp):
GAAAACGCCGCTAAACATCAACACCTTTGCGGCGTTTGTTGAAAAACGCCGGTAAAAATAAACAC
CTATTGCGGCGTTTGTGAA
Found at i:7147063 original size:11 final size:10
Alignment explanation
Indices: 7147038--7147082 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
7147028 TCCCACATTG
7147038 TTTTCTTTTCCT
1 TTTTCTTTT--T
*
7147050 TTTTCCTTTT
1 TTTTCTTTTT
7147060 TTTTCTTTTTT
1 TTTTC-TTTTT
7147071 TTTTCTTTTT
1 TTTTCTTTTT
7147081 TT
1 TT
7147083 ACACTGTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 13 0.43
11 9 0.30
12 8 0.27
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:7152589 original size:33 final size:33
Alignment explanation
Indices: 7152546--7152608 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
7152536 TATATTGTTT
*
7152546 GTTCAGTGTAAAT-ATTCCATTTTGACAGTTTTA
1 GTTCACTGTAAATGATT-CATTTTGACAGTTTTA
* *
7152579 GTTCACTGTAAATGGTTCATTTTGATAGTT
1 GTTCACTGTAAATGATTCATTTTGACAGTT
7152609 ATTCTGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.46
Consensus pattern (33 bp):
GTTCACTGTAAATGATTCATTTTGACAGTTTTA
Found at i:7159911 original size:20 final size:20
Alignment explanation
Indices: 7159882--7159920 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7159872 ATTTCACCAC
*
7159882 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
7159902 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
7159921 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:7166352 original size:11 final size:11
Alignment explanation
Indices: 7166336--7166373 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
7166326 TTTGGAAACA
7166336 TAATTTAAGAT
1 TAATTTAAGAT
7166347 TAATTTAAGAT
1 TAATTTAAGAT
7166358 TAATTTAAGA-
1 TAATTTAAGAT
7166368 TAATTT
1 TAATTT
7166374 GCAAATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.22
11 21 0.78
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (11 bp):
TAATTTAAGAT
Found at i:7166811 original size:16 final size:18
Alignment explanation
Indices: 7166790--7166823 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7166780 ATTTTATGTG
7166790 ATATAAAT-T-ATATAAT
1 ATATAAATATAATATAAT
7166806 ATATAAATATAATATAAT
1 ATATAAATATAATATAAT
7166824 TTTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATAAATATAATATAAT
Found at i:7169048 original size:2 final size:2
Alignment explanation
Indices: 7169041--7169100 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
7169031 ATCGATTAAC
7169041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7169083 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
7169101 AAAGGAAAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7174804 original size:21 final size:21
Alignment explanation
Indices: 7174779--7174819 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7174769 TATAAAAAAG
*
7174779 ATTATAAATTATTAATTAATA
1 ATTATAAATAATTAATTAATA
* *
7174800 ATTATTACTAATTAATTAAT
1 ATTATAAATAATTAATTAAT
7174820 TTATTAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTATAAATAATTAATTAATA
Found at i:7174812 original size:24 final size:24
Alignment explanation
Indices: 7174785--7174836 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
7174775 AAAGATTATA
7174785 AATT-ATTAA-TTAATAATTATTACT
1 AATTAATTAATTTAATAA-T-TTACT
*
7174809 AATTAATTAATTTATTAATTTACT
1 AATTAATTAATTTAATAATTTACT
7174833 AATT
1 AATT
7174837 CATGAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 13 0.52
25 6 0.24
26 6 0.24
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
AATTAATTAATTTAATAATTTACT
Found at i:7175728 original size:15 final size:15
Alignment explanation
Indices: 7175708--7175741 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7175698 TAGATTGTAT
7175708 AATAAAAAATAAATA
1 AATAAAAAATAAATA
* *
7175723 AATAAATATTAAATA
1 AATAAAAAATAAATA
7175738 AATA
1 AATA
7175742 TTAGAAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAAAAAATAAATA
Found at i:7177394 original size:39 final size:39
Alignment explanation
Indices: 7177333--7177445 Score: 194
Period size: 39 Copynumber: 2.9 Consensus size: 39
7177323 GAAGGTCTTA
*
7177333 GTGTTTCAAGAGAAACATTTTCAAAGGTTTTTCTTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTCTTTTTT
*
7177372 GTGTTTCAAGAGAAATAATTTCAAAGGTTTTTCTTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTCTTTTTT
7177411 GTG-TTCAAGAGAAACAATTTCAAAGGTTTTT-TTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTCTTTT
7177446 GTTTCAAGAG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 4 0.06
38 27 0.38
39 40 0.56
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (39 bp):
GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTCTTTTTT
Found at i:7177452 original size:34 final size:35
Alignment explanation
Indices: 7177334--7177499 Score: 167
Period size: 34 Copynumber: 4.6 Consensus size: 35
7177324 AAGGTCTTAG
*
7177334 TGTTTCAAGAGAAACATTTTCAAAGGTTTTTCTTTTTT
1 TGTTTCAAGAGAAACAATTTCAAAGG--TTT-TTTTTT
*
7177372 GTGTTTCAAGAGAAATAATTTCAAAGGTTTTTCTTTTT
1 -TGTTTCAAGAGAAACAATTTCAAAGG-TTTT-TTTTT
7177410 TGTGTTCAAGAGAAACAATTTCAAAGG-TTTTTTTT
1 TGT-TTCAAGAGAAACAATTTCAAAGGTTTTTTTTT
* ** * * *
7177445 TGTTTCAAGAGAAGCTGTCTCGAA--TATTTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGGT-TTTTTTTT
7177479 TGTTTCAAGAGAAACAATTTC
1 TGTTTCAAGAGAAACAATTTC
7177500 GAAGATTGGT
Statistics
Matches: 110, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
34 40 0.36
35 8 0.07
36 3 0.03
37 4 0.04
38 31 0.28
39 24 0.22
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (35 bp):
TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTT
Found at i:7180017 original size:16 final size:17
Alignment explanation
Indices: 7179996--7180037 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7179986 TTTTTTAATG
7179996 ATAATAATATA-TATAT
1 ATAATAATATATTATAT
*
7180012 ATAATAATATATTTTAT
1 ATAATAATATATTATAT
*
7180029 TTAATAATA
1 ATAATAATA
7180038 ATAATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAATAATATATTATAT
Found at i:7180033 original size:39 final size:35
Alignment explanation
Indices: 7179984--7180057 Score: 94
Period size: 39 Copynumber: 2.0 Consensus size: 35
7179974 TTATTATTAT
* *
7179984 TTTTTTTTAATGATAATAATATATATATATAATAATATA
1 TTTTATTTAATAATAATAATA-AT-TA-A-AATAATATA
7180023 TTTTATTTAATAATAATAATAATTAAAATAATATA
1 TTTTATTTAATAATAATAATAATTAAAATAATATA
7180058 ATGAAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 9 0.27
36 1 0.03
37 2 0.06
38 2 0.06
39 19 0.58
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (35 bp):
TTTTATTTAATAATAATAATAATTAAAATAATATA
Found at i:7180423 original size:75 final size:75
Alignment explanation
Indices: 7180179--7180811 Score: 1167
Period size: 75 Copynumber: 8.4 Consensus size: 75
7180169 GAAATATTGA
*
7180179 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCTGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG-AAACATCAAAAAGCTCCCGA
7180244 AGGCTTTTTGG
65 AGGCTTTTTGG
*
7180255 AAACATCATGCACTGAAGGACTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG-AAACATCAAAAAGCTCCCGA
7180320 AGGCTTTTTGG
65 AGGCTTTTTGG
*
7180331 AAACATCATGCACTGAAGGACTTACAGATGACCCAAAGGCTTTGAAACATCAAAAAGCTCCCGAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
7180396 GGCTTTTTGG
66 GGCTTTTTGG
7180406 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
*
7180471 GGCGTTTTGG
66 GGCTTTTTGG
*
7180481 AAATATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
*
7180546 GGCATTTTGG
66 GGCTTTTTGG
7180556 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
7180621 GGCTTTTTGG
66 GGCTTTTTGG
7180631 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
7180696 GGCTTTTTGG
66 GGCTTTTTGG
*
7180706 AAACATCATGCACTGAAGGACTTACAGATGACCGGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG-AAACATCAAAAAGCTCCCGA
7180771 AGGCTTTTTGG
65 AGGCTTTTTGG
*
7180782 AAACATCATGCACTGAAGGGCTTACAGATG
1 AAACATCATGCACTGAAGGACTTACAGATG
7180812 TGGGAAATAG
Statistics
Matches: 544, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
75 368 0.68
76 176 0.32
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (75 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAACATCAAAAAGCTCCCGAA
GGCTTTTTGG
Found at i:7181513 original size:22 final size:22
Alignment explanation
Indices: 7181488--7181564 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
7181478 CATAAAGCTT
7181488 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* * * *
7181510 TCATCTTTAAAAAGAAAATTTG
1 TCATCTTTGAAAAGAGAATCTA
* **
7181532 TCATCTCTGAAGTGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
7181554 TCATTTTTGAA
1 TCATCTTTGAA
7181565 GAGTGTAGAT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:7182002 original size:54 final size:54
Alignment explanation
Indices: 7181920--7182031 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
7181910 CGAATAGCAG
*** *
7181920 GTTCGTAAAACATTTAACAGTGCATTCATCCTTTCCTGTGGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
* **
7181974 GTTCGTAAAACATTTGACAACACATTCATCCTTTTTTGTGGCTTCTGCTCAGAT
1 GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
7182028 GTTC
1 GTTC
7182032 TCAATCATTG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (54 bp):
GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
Found at i:7183268 original size:145 final size:145
Alignment explanation
Indices: 7183093--7183400 Score: 580
Period size: 145 Copynumber: 2.1 Consensus size: 145
7183083 CTTGTTAATC
* * *
7183093 TGAGCCTTCAAAATGCCCCATATGGATCTGTCTGAAAGAACCTTTAAAATGTCCCAACATTTGCT
1 TGAGCCTTCAAAATGCCCCACATGGATCTGTCTGAAAGAACCTTTAAAATGCCCCAACATTTACT
7183158 GATACAGATGCCAAAAGTATGTTCAACATTACTTCTTGTTGAGATGAGCCTCCAAGAATGCCCAA
66 GATACAGATGCCAAAAGTATGTTCAACATTACTTCTTGTTGAGATGAGCCTCCAAGAATGCCCAA
7183223 ATATTCATATTGTTG
131 ATATTCATATTGTTG
*
7183238 TGAGCCTTCAAAATGCCCCACATGGATCTGTCTGAAGGAACCTTTAAAATGCCCCAACATTTACT
1 TGAGCCTTCAAAATGCCCCACATGGATCTGTCTGAAAGAACCTTTAAAATGCCCCAACATTTACT
7183303 GATACAGATGCCAAAAGTATGTTCAACATTACTTCTTGTTGAGATGAGCCTCCAAGAATGCCCAA
66 GATACAGATGCCAAAAGTATGTTCAACATTACTTCTTGTTGAGATGAGCCTCCAAGAATGCCCAA
7183368 ATATTCATATTGTTG
131 ATATTCATATTGTTG
7183383 TGAGCCTTCAAAATGCCC
1 TGAGCCTTCAAAATGCCC
7183401 AAATATTCTA
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 159 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (145 bp):
TGAGCCTTCAAAATGCCCCACATGGATCTGTCTGAAAGAACCTTTAAAATGCCCCAACATTTACT
GATACAGATGCCAAAAGTATGTTCAACATTACTTCTTGTTGAGATGAGCCTCCAAGAATGCCCAA
ATATTCATATTGTTG
Found at i:7184574 original size:114 final size:114
Alignment explanation
Indices: 7184374--7184602 Score: 368
Period size: 114 Copynumber: 2.0 Consensus size: 114
7184364 GATCATGCAG
* * * *
7184374 TTCATCTTTCAATTCCAATGATCGGTTCTGGGGTTCCTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
7184439 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
* * * *
7184488 TTCATCTTTTAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCATATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
7184553 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
7184602 T
1 T
7184603 GGCACTTGCT
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 105 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
Found at i:7194023 original size:104 final size:106
Alignment explanation
Indices: 7193605--7194055 Score: 717
Period size: 106 Copynumber: 4.2 Consensus size: 106
7193595 TGGGAATTTA
* * *
7193605 AAATTGACTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGTCGTCCCTTCGCTGTGAAGTTGAG
1 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGA-
7193670 CTTGTGCTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
65 -----GCTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
* *
7193717 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGGCAGTCAGCCGCCCTTTCGCTGTGAAGTTGAG
1 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
* *
7193782 CTTGTGCTGTCTAGAGTCCAATATCCTTCGATGTGAAGTTG
66 CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
7193823 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
1 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
7193888 CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
66 CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
* * *
7193929 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTTAG-C-CCCCTTAGCTGTGAAGTTGAT
1 AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
* *
7193992 CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTATGAAGTTC
66 CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
*
7194033 AAATTGACTCTGAAATTGGGAAG
1 AAATTGGCTCTGAAATTGGGAAG
7194056 CCCCTTCGTC
Statistics
Matches: 322, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
104 80 0.25
105 1 0.00
106 182 0.57
112 59 0.18
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.35
Consensus pattern (106 bp):
AAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
CTTGTGCTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTG
Found at i:7194149 original size:43 final size:43
Alignment explanation
Indices: 7194088--7194201 Score: 210
Period size: 43 Copynumber: 2.7 Consensus size: 43
7194078 CTCAAATGGC
*
7194088 ACGATATCCTCCGTCGTGGAGTTGAAATAGTAGATGTGTGGGT
1 ACGATATCCTCTGTCGTGGAGTTGAAATAGTAGATGTGTGGGT
*
7194131 ACGATATCATCTGTCGTGGAGTTGAAATAGTAGATGTGTGGGT
1 ACGATATCCTCTGTCGTGGAGTTGAAATAGTAGATGTGTGGGT
7194174 ACGATATCCTCTGTCGTGGAGTTGAAAT
1 ACGATATCCTCTGTCGTGGAGTTGAAAT
7194202 CGCGGATGGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.32
Consensus pattern (43 bp):
ACGATATCCTCTGTCGTGGAGTTGAAATAGTAGATGTGTGGGT
Found at i:7198421 original size:16 final size:16
Alignment explanation
Indices: 7198397--7198431 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7198387 CAGGTAAATA
*
7198397 AAATGAAATATTTATT
1 AAATAAAATATTTATT
7198413 AAATAAAATATTTATT
1 AAATAAAATATTTATT
7198429 AAA
1 AAA
7198432 ATTGAGCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
AAATAAAATATTTATT
Found at i:7201017 original size:22 final size:23
Alignment explanation
Indices: 7200979--7201052 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
7200969 TCGGGCCGGG
7200979 TATATATATATATTTAAATTAAA
1 TATATATATATATTTAAATTAAA
*
7201002 TATATAT-TTTATTTAAATTAAA
1 TATATATATATATTTAAATTAAA
* * *
7201024 TTTAT-TA-ATA-TTATA-TATA
1 TATATATATATATTTAAATTAAA
7201043 TATATATATA
1 TATATATATA
7201053 AATAATTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 7 0.17
20 6 0.14
21 4 0.10
22 18 0.43
23 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TATATATATATATTTAAATTAAA
Found at i:7201103 original size:13 final size:12
Alignment explanation
Indices: 7201072--7201107 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7201062 TTTTAATATT
*
7201072 TATCGGGTCGGG
1 TATCGGGGCGGG
7201084 TATCGGGGCGGG
1 TATCGGGGCGGG
7201096 TAATCGGGGCGG
1 T-ATCGGGGCGG
7201108 AGATTACCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.11, C:0.17, G:0.53, T:0.19
Consensus pattern (12 bp):
TATCGGGGCGGG
Found at i:7204960 original size:12 final size:12
Alignment explanation
Indices: 7204943--7204968 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7204933 CCGATTTAGC
7204943 AAAACAGTACTG
1 AAAACAGTACTG
7204955 AAAACAGTACTG
1 AAAACAGTACTG
7204967 AA
1 AA
7204969 TGATTCAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (12 bp):
AAAACAGTACTG
Found at i:7212293 original size:23 final size:23
Alignment explanation
Indices: 7212242--7212293 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
7212232 ATCAATACCC
*
7212242 CCTTGAAGGGGAACTGATTCCCA
1 CCTTGAAGGGGAACCGATTCCCA
* * *
7212265 CTTTGAATGGGAACCGATTCCCT
1 CCTTGAAGGGGAACCGATTCCCA
7212288 CCTTGA
1 CCTTGA
7212294 GAGAATCGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (23 bp):
CCTTGAAGGGGAACCGATTCCCA
Found at i:7214019 original size:17 final size:17
Alignment explanation
Indices: 7213994--7214027 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7213984 AAAGGGGGAG
7213994 AAATATTAAAATGTTTT
1 AAATATTAAAATGTTTT
*
7214011 AAATGTTAAAATGTTTT
1 AAATATTAAAATGTTTT
7214028 TAAAGGGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
AAATATTAAAATGTTTT
Found at i:7219419 original size:18 final size:18
Alignment explanation
Indices: 7219396--7219430 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7219386 GTGTGGATTG
*
7219396 TTTTATTTAGATTTTATT
1 TTTTATTTAAATTTTATT
7219414 TTTTATTTAAATTTTAT
1 TTTTATTTAAATTTTAT
7219431 AATATGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTATTTAAATTTTATT
Found at i:7221007 original size:71 final size:69
Alignment explanation
Indices: 7220872--7221119 Score: 285
Period size: 71 Copynumber: 3.6 Consensus size: 69
7220862 TGGTTATCTG
*
7220872 ATTAATATTCAAATTTAAAGAGATAAT--AT-T-TTTTAATTTAAAATATTCAAAAGGATATATT
1 ATTAATATTCAAA-TTAAAGAGATAATAAATATCTTTTAATTTAAAATATTCAAAAGGAT-TAAT
*
7220933 TATCTT
64 TATCCT
* * * *
7220939 TTTAATATTTAAATTTAAAGAAATAATAAATATCTTTTAATTTAAAATATTCAAAATGATGTAAT
1 ATTAATATTCAAA-TTAAAGAGATAATAAATATCTTTTAATTTAAAATATTCAAAAGGAT-TAAT
7221004 TATCCT
64 TATCCT
* * * *
7221010 ATTAATATATCCAAACTAAAGAGATGATAAATATCTTTTAAATTAAAATATTCAATAGGA-TAAT
1 ATTAATAT-T-CAAATTAAAGAGATAATAAATATCTTTTAATTTAAAATATTCAAAAGGATTAAT
7221074 TATCCT
64 TATCCT
* *
7221080 AGTAATA-TCAAATTAAA-AGATAATAAATATCCTTTAATTT
1 ATTAATATTCAAATTAAAGAGATAATAAATATCTTTTAATTT
7221120 CGAGTTTTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
66 20 0.13
67 32 0.21
68 1 0.01
69 2 0.01
70 17 0.11
71 40 0.26
72 40 0.26
73 3 0.02
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.41
Consensus pattern (69 bp):
ATTAATATTCAAATTAAAGAGATAATAAATATCTTTTAATTTAAAATATTCAAAAGGATTAATTA
TCCT
Found at i:7224473 original size:4 final size:4
Alignment explanation
Indices: 7224464--7224498 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
7224454 TTCGAACATA
*
7224464 AAAT AAAT AAAT AAGT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
7224499 AATTAGTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:7226388 original size:24 final size:23
Alignment explanation
Indices: 7226361--7226405 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7226351 TATTTAGGTG
* *
7226361 TTATAATAGGGTTTGGTTTGGGCA
1 TTAT-ATAAGGTTTGATTTGGGCA
*
7226385 TTATTTAAGGTTTGATTTGGG
1 TTATATAAGGTTTGATTTGGG
7226406 TTTAGTTCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (23 bp):
TTATATAAGGTTTGATTTGGGCA
Found at i:7227078 original size:95 final size:95
Alignment explanation
Indices: 7226905--7227686 Score: 992
Period size: 95 Copynumber: 8.2 Consensus size: 95
7226895 CGAATGTAGT
* * * * ** **
7226905 ACAAGTTCTTCGCATTATGAACTC-CCATTGAAAATGTTAATCCCTTAAGTAAGAAGAT-ATTGA
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCG-TCGCTGA
* * * * * *
7226968 TTTGAAATATTGTGAATCGAGGAAATGTTAA
65 TTCGAAATGTCGTGAATCGAGCAAAGGTTGA
* *
7226999 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCCCTCAAGTGAGGCATCGCTGAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
* * *
7227064 TCGAAATGTAGTGAATTGAGAAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
* * * *
7227094 ACATGTTATTCTCATTATGAACTCTCCATTGGAAATGTTAATCTCTCAAGTGAGGCGTCGCTAAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
* * * *
7227159 TCAAAATGTCATGAATCAAGGAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
* *
7227189 ACAAGTTCTTCTTATTATGAACTCTCCATTGGAAATGTTAATCACTCAAGTGAGGCGTCGCTGAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
*
7227254 TCAAAATGTCGTGAATCGAGCAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
* ** * **
7227284 ACAAGTTCTTCTCATTATGAATTCAACATTGTAAATGTTAATCCCTCAAGTGAGGCGTCATTGAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
* *
7227349 TCAAAATGTCGTAAATCGAGCAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
** * * * *
7227379 ACAAACTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGTGTCACTGAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
*
7227444 TCGAAATGTCGTGAATAGAGCAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
* * *
7227474 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCCCTCAAGTGAGTCGTCGCTTAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
* * * * *
7227539 TTGCAATGTCATGAATCGAGAAAAGTTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
* * * *
7227569 ACAAGTTCTTCTCATTATGAACTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCGCTGAT
1 ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
** *
7227634 TCGAAATACCGTGAATCGAGTAAAGGTTGA
66 TCGAAATGTCGTGAATCGAGCAAAGGTTGA
*
7227664 ACAAGTTCTTCTCATTACGAACT
1 ACAAGTTCTTCTCATTATGAACT
7227687 TATTCTCCCT
Statistics
Matches: 599, Mismatches: 87, Indels: 3
0.87 0.13 0.00
Matches are distributed among these distances:
94 24 0.04
95 575 0.96
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Consensus pattern (95 bp):
ACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCTCAAGTGAGGCGTCGCTGAT
TCGAAATGTCGTGAATCGAGCAAAGGTTGA
Found at i:7227692 original size:20 final size:21
Alignment explanation
Indices: 7227667--7227727 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 21
7227657 AGGTTGAACA
7227667 AGTTCTTCTCATTACGAACTT
1 AGTTCTTCTCATTACGAACTT
* * *
7227688 A-TTCTCCCTC-TAACGAA-TG
1 AGTTCT-TCTCATTACGAACTT
*
7227707 AGTTCTTCTCATTATGAACTT
1 AGTTCTTCTCATTACGAACTT
7227728 TCCATTGGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.41
Consensus pattern (21 bp):
AGTTCTTCTCATTACGAACTT
Found at i:7228262 original size:812 final size:820
Alignment explanation
Indices: 7227258--7228884 Score: 2991
Period size: 812 Copynumber: 2.0 Consensus size: 820
7227248 GCTGATTCAA
*
7227258 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAATTCAACATTGTAAATGTT
1 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCAGTATGAATTCAACATTGTAAATGTT
* *
7227323 AATCCCTCAAGTGAGGCGTCATTGATTCAAAATGTCGTAAATCGAGCAAAGGTTGAACAAACTCT
66 AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAGGTTGAACAAACTCT
*
7227388 TCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGTGTCACTGATTCGAAATGT
131 TCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATGT
* * * *
7227453 CGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCC
196 CATGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCA
* *
7227518 CTCAAGTGAGTCGTCGCTTATTTGCAATGTCATGAATCGAGAAAAGTTTGAACAAGTTCTTCTCA
261 CTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATCAAGAAAAGTTTGAACAAGTTCTTCTCA
*
7227583 TTATGAACTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATACCGTGA
326 TTATGAACTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACCGTGA
7227648 ATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAGTTCT
391 ATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAGTTCT
* *
7227713 TCTCATTATGAACTTTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGAAGAGTTTTAAACCT
456 TCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTATTTGAAGAGTTTTAAACCT
*
7227778 TTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGGTCCT
521 GTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGGTCCT
*
7227843 CAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTTAAATATT
586 CAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGATTAAATATT
7227908 CTACTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTACAAA
651 CTACTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTACAAA
7227973 ATATATCGTCTAATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTCTTTGTTGGGTCCATC
716 ATATATCGTCTAATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTCTTTGTTGGGTCCATC
7228038 CCAGGAACTACACTGCTCACTCACATTGAAACAATCTAAG
781 CCAGGAACTACACTGCTCACTCACATTGAAACAATCTAAG
7228078 AATGT-GTGAATCGAGCAAAGGTTGAAC-AGTTCTTCTCAGTATGAATTCAACATTG-AAATG-T
1 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCAGTATGAATTCAACATTGTAAATGTT
7228139 AATCCCTCAAGTGAGGC-TCACTGATTCAAAATGTCATAAATCGAGCAAAGG-TGAAC-AACT-T
66 AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAGGTTGAACAAACTCT
*
7228200 TCTCATTATGAACTCTGCATTAGAAATGTTAATTCCTCAAGTGAGGCGTCACTGATTCGAAATGT
131 TCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATGT
7228265 CATGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCA
196 CATGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCA
7228330 CTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATCAAGAAAAGTTTGAACAAGTTCTTCTCA
261 CTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATCAAGAAAAGTTTGAACAAGTTCTTCTCA
*
7228395 TTATGAATTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACCGTGA
326 TTATGAACTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACCGTGA
*
7228460 ATCGAGTAAAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTCTAACGAATGAGTTCT
391 ATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAGTTCT
7228525 TCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTATTTGAAGAGTTTTAAACCT
456 TCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTATTTGAAGAGTTTTAAACCT
*
7228590 GTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGGTTCT
521 GTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGGTCCT
*
7228655 CAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGATTAAGTATT
586 CAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGATTAAATATT
*
7228720 CTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTACAAA
651 CTACTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTACAAA
* *
7228785 ATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGGGTCCATC
716 ATATATCGTCTAATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTCTTTGTTGGGTCCATC
7228850 CCAGGAACTACACTGCTCACTCACATTGAAACAAT
781 CCAGGAACTACACTGCTCACTCACATTGAAACAAT
7228885 TTGAAAAGTC
Statistics
Matches: 784, Mismatches: 23, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
812 666 0.85
813 4 0.01
814 5 0.01
815 32 0.04
816 18 0.02
817 5 0.01
818 27 0.03
819 22 0.03
820 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (820 bp):
AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCAGTATGAATTCAACATTGTAAATGTT
AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAGGTTGAACAAACTCT
TCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATGT
CATGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCA
CTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATCAAGAAAAGTTTGAACAAGTTCTTCTCA
TTATGAACTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACCGTGA
ATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAGTTCT
TCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTATTTGAAGAGTTTTAAACCT
GTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGGTCCT
CAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGATTAAATATT
CTACTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTACAAA
ATATATCGTCTAATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTCTTTGTTGGGTCCATC
CCAGGAACTACACTGCTCACTCACATTGAAACAATCTAAG
Found at i:7228327 original size:95 final size:95
Alignment explanation
Indices: 7228084--7228498 Score: 493
Period size: 95 Copynumber: 4.4 Consensus size: 95
7228074 TAAGAATGTG
* * * * **
7228084 TGAATCGAGCAAAGGTTGAAC-AGTTCTTCTCAGTATGAATTCAACATT-GAAATG-TAATCCCT
1 TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCT
*
7228146 CAAGTGAGGC-TCACTGATTCAAAATGTCA
66 CAAGTGAGGCGTCACTGATTCGAAATGTCA
* * * * * * *
7228175 TAAATCGAGCAAAGG-TGAACAA-CT-TTCTCATTATGAACTCTGCATTAGAAATGTTAATTCCT
1 TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCT
7228237 CAAGTGAGGCGTCACTGATTCGAAATGTCA
66 CAAGTGAGGCGTCACTGATTCGAAATGTCA
* * *
7228267 TGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCACT
1 TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCT
* * * *
7228332 CAAGTGAGTCGTCGCTTATTTGAAATGTCA
66 CAAGTGAGGCGTCACTGATTCGAAATGTCA
* * *
7228362 TGAATCAAGAAAAGTTTGAACAAGTTCTTCTCATTATGAATTCTCTATTGGAAATGTTAATCCCT
1 TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCT
* * * ** *
7228427 CAAGTAAGACGCCACTGATTCGAAATACCG
66 CAAGTGAGGCGTCACTGATTCGAAATGTCA
* *
7228457 TGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTATGAACT
1 TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACT
7228499 TATTCTCCCT
Statistics
Matches: 276, Mismatches: 41, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
89 18 0.07
90 12 0.04
91 32 0.12
92 29 0.11
93 7 0.03
94 1 0.00
95 177 0.64
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (95 bp):
TGAATCAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTAATCCCT
CAAGTGAGGCGTCACTGATTCGAAATGTCA
Found at i:7229178 original size:95 final size:94
Alignment explanation
Indices: 7229015--7229443 Score: 529
Period size: 95 Copynumber: 4.5 Consensus size: 94
7229005 TGATCCTAAG
* * * * *
7229015 AATGTTGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAATTCAACATTGGAAATGTT
1 AATGTCGTGAATCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACTC-TCATTAGAAATGTT
*
7229080 AATCCCTCAAGTGAGGCGTCACTGATTCAA
65 AATCCCTCAAGTGAGGCGTCACTGATTCGA
* **
7229110 AATGTCGTAAATCGAGCAAAAGTTGAACAAACTCTTCTCATTATGAACTCTGCATTAGAAATGTT
1 AATGTCGTGAATCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACTCT-CATTAGAAATGTT
*
7229175 AATCCCTCAAGTGAGGCGTCACTGATTTGA
65 AATCCCTCAAGTGAGGCGTCACTGATTCGA
* * *
7229205 AATGTCGTGAATAGAGC-AAAGATTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTT
1 AATGTCGTGAATCGAGCAAAAG-TTGAACAAGTTCTTCTCATTATGAACTCT-CATTAGAAATGT
* * * *
7229269 TAATCCCTCAAGTGAGTCGTCGCTTATTTGA
64 TAATCCCTCAAGTGAGGCGTCACTGATTCGA
* * *
7229300 AATGTCATGAATTGAG-AAAAGTTTGAACAAGTTCTTCTCATTATGAACTCTCTATTAGAAATAT
1 AATGTCGTGAATCGAGCAAAAG-TTGAACAAGTTCTTCTCATTATGAACTCTC-ATTAGAAATGT
* * * *
7229364 TAATCCCTCAAGTAAGACGCCGCTGATTCGA
64 TAATCCCTCAAGTGAGGCGTCACTGATTCGA
** * * *
7229395 AATACCGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACT
1 AATGTCGTGAATCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACT
7229444 TATTCTCCCT
Statistics
Matches: 293, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
94 5 0.02
95 284 0.97
96 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (94 bp):
AATGTCGTGAATCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACTCTCATTAGAAATGTTA
ATCCCTCAAGTGAGGCGTCACTGATTCGA
Found at i:7229359 original size:190 final size:190
Alignment explanation
Indices: 7229015--7229443 Score: 583
Period size: 190 Copynumber: 2.3 Consensus size: 190
7229005 TGATCCTAAG
* *
7229015 AATGTTGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAATTCAACATTGGAAATGTT
1 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTT
*
7229080 AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAAACTCT
66 AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAAGTTGAACAAACTCT
* * * * *
7229145 TCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGA
131 TCTCATTATGAACTCTGCATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGA
* * ** *
7229205 AATGTCGTGAATAGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
1 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTT
* * * ** * * **
7229270 AATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAG-AAAAGTTTGAACAAGTTC
66 AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAAG-TTGAACAAACTC
*
7229334 TTCTCATTATGAACTCT-CTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGA
130 TTCTCATTATGAACTCTGC-ATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGA
** * *
7229395 AATACCGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACT
1 AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACT
7229444 TATTCTCCCT
Statistics
Matches: 208, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
189 6 0.03
190 202 0.97
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (190 bp):
AATGTCGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTT
AATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATAAATCGAGCAAAAGTTGAACAAACTCT
TCTCATTATGAACTCTGCATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGA
Found at i:7230029 original size:945 final size:944
Alignment explanation
Indices: 7228073--7230909 Score: 5240
Period size: 945 Copynumber: 3.0 Consensus size: 944
7228063 TTGAAACAAT
*
7228073 CTAAGAATG-TGTGAATCGAGCAAAGGTTGAACAGTTCTTCTCAGTATGAATTCAACATT-GAAA
1 CTAAGAATGTTGTGAATCGAGCAAAGGTTGAACAGTTCTTCTCATTATGAATTCAACATTGGAAA
* *
7228136 TG-TAATCCCTCAAGTGAGGC-TCACTGATTCAAAATGTCATAAATCGAGC-AAAGGTGAAC-AA
66 TGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAAA
* *
7228197 CT-TTCTCATTATGAACTCTGCATTAGAAATGTTAATTCCTCAAGTGAGGCGTCACTGATTCGAA
131 CTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGAA
* * *
7228261 ATGTCATGAATAAAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTA
196 ATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTA
* **
7228326 ATCACTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATCAAGAAAAGTTTGAACAAGTTCTT
261 ATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTCTT
* * * *
7228391 CTCATTATGAATTCTCTATTGGAAATGTTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACC
326 CTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATACC
*
7228456 GTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTCTAACGAATGAG
391 GTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAG
* *
7228521 TTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTATTTGAAGAGTTTTAA
456 TTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTTTAA
7228586 ACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGG
521 ACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGG
* *
7228651 TTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGATTAAG
586 TTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTTAAA
7228716 TATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTA
651 TATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTA
7228781 CAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGGGTC
716 CAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGGGTC
7228846 CATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAATGCA
781 CATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAATGCA
7228911 TTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGTCCT
846 TTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGTCCT
*
7228976 AAGAATGACTCGAACAATTTTCTAAAAAATGATC
911 AAGAATGACTCGAACAATTTTCTAAAAAAAGATC
7229010 CTAAGAATGTTGTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAATTCAACATTGGAA
1 CTAAGAATGTTGTGAATCGAGCAAAGGTTGAAC-AGTTCTTCTCATTATGAATTCAACATTGGAA
7229075 ATGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAA
65 ATGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAA
7229140 ACTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGA
130 ACTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGA
*
7229205 AATGTCGTGAATAGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
195 AATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
7229270 AATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTCT
260 AATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTCT
7229335 TCTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATAC
325 TCTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATAC
7229400 CGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGA
390 CGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGA
7229465 GTTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTTTA
455 GTTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTTTA
*
7229530 AACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGATAATGACCCTATG
520 AACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATG
*
7229595 GTCCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTTAA
585 GTTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTTAA
*
7229660 ATATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCATAATATT
650 ATATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATT
* * * *
7229725 ATAAAATATATCATCTAATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTCTTTGTTGGGT
715 ACAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGGGT
* * *
7229790 CCATCCCAGGAACTACACTGCTCACTCACATTGAAACAATCTGAAAAGTCAAGTTTAAGAAATGT
780 CCATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAATGC
* *
7229855 AGTGCTGGAGAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGTCC
845 ATTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGTCC
*
7229920 TAAGAATGACTCGAACAATTTTCTAAAAAACGATC
910 TAAGAATGACTCGAACAATTTTCTAAAAAAAGATC
7229955 CTAAGAATGTTGTGAATCGAGCAAAGGTTGAACATGTTCTTCTCATTATGAATTCAACATTGGAA
1 CTAAGAATGTTGTGAATCGAGCAAAGGTTGAACA-GTTCTTCTCATTATGAATTCAACATTGGAA
*
7230020 ATGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGAAAAAGTTGAACAA
65 ATGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAA
7230085 A-TCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGA
130 ACTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGA
7230149 AATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
195 AATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
*
7230214 AATCCCTCAAGTGAGTCATCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTCT
260 AATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTC-
7230279 TCTCTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAAT
324 T-TCTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAAT
7230344 ACCGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAAT
388 ACCGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAAT
7230409 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTT
453 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTT
*
7230474 TAAAACTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTA
518 TAAACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTA
7230539 TGGTTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTT
583 TGGTTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTT
7230604 AAATATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATA
648 AAATATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATA
7230669 TTACAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGG
713 TTACAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGG
7230734 GTCCATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAAT
778 GTCCATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAAT
7230799 GCATTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGT
843 GCATTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGT
7230864 CCTAAGAATGACTCGAACAATTTTCTAAAAAAAGATC
908 CCTAAGAATGACTCGAACAATTTTCTAAAAAAAGATC
7230901 CTAAGAATG
1 CTAAGAATG
7230910 AAAAAATAGT
Statistics
Matches: 1838, Mismatches: 51, Indels: 13
0.97 0.03 0.01
Matches are distributed among these distances:
937 9 0.00
938 23 0.01
939 26 0.01
940 6 0.00
941 18 0.01
942 28 0.02
943 9 0.00
944 195 0.11
945 909 0.49
946 615 0.33
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (944 bp):
CTAAGAATGTTGTGAATCGAGCAAAGGTTGAACAGTTCTTCTCATTATGAATTCAACATTGGAAA
TGTTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGCAAAAGTTGAACAAA
CTCTTCTCATTATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGAA
ATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTA
ATCCCTCAAGTGAGTCGTCGCTTATTTGAAATGTCATGAATTGAGAAAAGTTTGAACAAGTTCTT
CTCATTATGAACTCTCTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATACC
GTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACTTATTCTCCCTCTAACGAATGAG
TTCTTCTCATTATGAACTCTCCATTGGAAATGTGATTAGTTTATCTTCTCTTTGACGAGTTTTAA
ACCTGTAAAAGATTATCATATATCAGTGATTTGTTTTAAAGTACCTGAAGGTAATGACCCTATGG
TTCTCAATTTTTCTGAGATCCATTTCTTTCAATGATGAAAAATATGGATTGATACTTTGCTTAAA
TATTCTTCTTCTTCATGCAGTCGTGAAATGAAATCTTTGTTAACTCTTTGAATTCCTTAATATTA
CAAAATATATCGTCTGATGAATCTTTGCTCCTTTATATGTGCTGAGTTTTTGTTTTTGTTGGGTC
CATCCCAGGAACTACACTGCTCACTCACATTGAAACAATTTGAAAAGTCAAGTTTAATAAATGCA
TTGCTGGAAAGGCTTCTAGGGAAACCTTGAGAATGAATTCAGCGACATCCCAGAAAAACGGTCCT
AAGAATGACTCGAACAATTTTCTAAAAAAAGATC
Found at i:7230242 original size:95 final size:95
Alignment explanation
Indices: 7229960--7230389 Score: 520
Period size: 95 Copynumber: 4.5 Consensus size: 95
7229950 CGATCCTAAG
* * * * ** *
7229960 AATGTTGTGAATCGAGCAAAGGTTGAACATGTTCTTCTCATTATGAATTCAACATTGGAAATGTT
1 AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTAGAAATGTT
*
7230025 AATCCCTCAAGTGAGGCGTCACTGATTCAA
66 AATCCCTCAAGTGAGGCGTCACTGATTCGA
* * * *
7230055 AATGTCGTAAATCGAGAAAAAGTTGAACAA-ATCTTCTCATTATGAACTCTGCATTAGAAATGTT
1 AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTAGAAATGTT
*
7230119 AATCCCTCAAGTGAGGCGTCACTGATTTGA
66 AATCCCTCAAGTGAGGCGTCACTGATTCGA
* * * *
7230149 AATGTCGTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTT
1 AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTAGAAATGTT
* * * * *
7230214 AATCCCTCAAGTGAGTCATCGCTTATTTGA
66 AATCCCTCAAGTGAGGCGTCACTGATTCGA
* * * * *
7230244 AATGTCATGAATTGAGAAAAGTTTGAACAAGTTCTTCTCTCATTATGAACTCTCTATTAGAAATA
1 AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTC-T-TCTCATTATGAACTCTCCATTAGAAATG
* * * *
7230309 TTAATCCCTCAAGTAAGACGCCGCTGATTCGA
64 TTAATCCCTCAAGTGAGGCGTCACTGATTCGA
** * *
7230341 AATACCGTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACT
1 AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACT
7230390 TATTCTCCCT
Statistics
Matches: 288, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
94 83 0.29
95 124 0.43
96 2 0.01
97 79 0.27
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (95 bp):
AATGTCGTGAATCGAGAAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTAGAAATGTT
AATCCCTCAAGTGAGGCGTCACTGATTCGA
Found at i:7230377 original size:192 final size:189
Alignment explanation
Indices: 7229966--7230389 Score: 555
Period size: 189 Copynumber: 2.2 Consensus size: 189
7229956 TAAGAATGTT
* *
7229966 GTGAATCGAGCAAAGGTTGAACATGTTCTTCTCATTATGAATTCAACATTGGAAATGTTAATCCC
1 GTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTTAATCCC
* *
7230031 TCAAGTGAGGCGTCACTGATTCAAAATGTCGTAAATCGAGAAAAAGTTGAACAAATCTTCTCATT
66 TCAAGTGAGGCATCACTGATTCAAAATGTCATAAATCGAGAAAAAGTTGAACAAATCTTCTCATT
* * * * * **
7230096 ATGAACTCTGCATTAGAAATGTTAATCCCTCAAGTGAGGCGTCACTGATTTGAAATGTC
131 ATGAACTCTGCATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACC
* ** *
7230155 GTGAATAGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCTCCATTGGAAATTTTAATCCC
1 GTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTTAATCCC
* * * ** * * *
7230220 TCAAGTGAGTCATCGCTTATTTGAAATGTCATGAATTGAG-AAAAGTTTGAACAAGTTCTTCTCT
66 TCAAGTGAGGCATCACTGATTCAAAATGTCATAAATCGAGAAAAAG-TTGAACAA-ATC-T-TCT
*
7230284 CATTATGAACTCT-CTATTAGAAATATTAATCCCTCAAGTAAGACGCCGCTGATTCGAAATACC
127 CATTATGAACTCTGC-ATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACC
* *
7230347 GTGAATCGAGTAAAGGTTGAACAAGTTCTTCTCATTACGAACT
1 GTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACT
7230390 TATTCTCCCT
Statistics
Matches: 203, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
188 5 0.02
189 98 0.48
190 2 0.01
191 2 0.01
192 96 0.47
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (189 bp):
GTGAATCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTCAACATTGGAAATGTTAATCCC
TCAAGTGAGGCATCACTGATTCAAAATGTCATAAATCGAGAAAAAGTTGAACAAATCTTCTCATT
ATGAACTCTGCATTAGAAATATTAATCCCTCAAGTAAGACGCCACTGATTCGAAATACC
Found at i:7233928 original size:10 final size:10
Alignment explanation
Indices: 7233910--7233955 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
7233900 ATTTGATATG
*
7233910 TTTTCTTTCT
1 TTTTTTTTCT
7233920 TTTTTTTTCT
1 TTTTTTTTCT
7233930 TTTTTTTTCT
1 TTTTTTTTCT
* *
7233940 ATATTTTCTCT
1 -TTTTTTTTCT
7233951 TTTTT
1 TTTTT
7233956 CTCTCTGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:7235344 original size:14 final size:15
Alignment explanation
Indices: 7235322--7235358 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
7235312 GAAAATGCAA
*
7235322 AGATGCAAAAATAGG
1 AGATGCAAAAATACG
7235337 AG-TGC-AAAATACG
1 AGATGCAAAAATACG
7235350 AGATGCAAA
1 AGATGCAAA
7235359 TGCAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 9 0.47
14 6 0.32
15 4 0.21
ACGTcount: A:0.51, C:0.11, G:0.24, T:0.14
Consensus pattern (15 bp):
AGATGCAAAAATACG
Found at i:7235804 original size:29 final size:30
Alignment explanation
Indices: 7235751--7235810 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
7235741 AAAGCATAAG
*
7235751 ACAAGACAAAAGGAAATCAAGTTAGTAGAA
1 ACAAGACAAAAAGAAATCAAGTTAGTAGAA
*
7235781 ACAAGACAAAAAG-AATCAAGTTAGTTGAA
1 ACAAGACAAAAAGAAATCAAGTTAGTAGAA
7235810 A
1 A
7235811 TGATTAGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.57, C:0.10, G:0.18, T:0.15
Consensus pattern (30 bp):
ACAAGACAAAAAGAAATCAAGTTAGTAGAA
Found at i:7240024 original size:32 final size:32
Alignment explanation
Indices: 7239986--7240062 Score: 154
Period size: 32 Copynumber: 2.4 Consensus size: 32
7239976 ATGGGTACAA
7239986 ATTTTCAAATCCACACCCGCCCTCGCGGGTAC
1 ATTTTCAAATCCACACCCGCCCTCGCGGGTAC
7240018 ATTTTCAAATCCACACCCGCCCTCGCGGGTAC
1 ATTTTCAAATCCACACCCGCCCTCGCGGGTAC
7240050 ATTTTCAAATCCA
1 ATTTTCAAATCCA
7240063 TCCCCACACC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.13, T:0.25
Consensus pattern (32 bp):
ATTTTCAAATCCACACCCGCCCTCGCGGGTAC
Found at i:7245846 original size:14 final size:15
Alignment explanation
Indices: 7245810--7245841 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7245800 GTGATCAATT
7245810 ATAATTTACCTTTAA
1 ATAATTTACCTTTAA
*
7245825 ATAATTTACTTTTAA
1 ATAATTTACCTTTAA
7245840 AT
1 AT
7245842 TTTTAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (15 bp):
ATAATTTACCTTTAA
Found at i:7250910 original size:15 final size:16
Alignment explanation
Indices: 7250890--7250922 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7250880 CTCCAACTGT
7250890 TCTGCTTCGGG-CTGC
1 TCTGCTTCGGGTCTGC
7250905 TCTGCTTCGGGTCTGC
1 TCTGCTTCGGGTCTGC
7250921 TC
1 TC
7250923 CGACTTGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.00, C:0.33, G:0.30, T:0.36
Consensus pattern (16 bp):
TCTGCTTCGGGTCTGC
Found at i:7253888 original size:13 final size:13
Alignment explanation
Indices: 7253870--7253931 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
7253860 TAGTCAGTCT
7253870 TAATATTAAAAGA
1 TAATATTAAAAGA
**
7253883 TAATATTAAGTGA
1 TAATATTAAAAGA
7253896 TCTTAATATTAAAAGA
1 ---TAATATTAAAAGA
* *
7253912 TAATATTTAAACA
1 TAATATTAAAAGA
7253925 T-ATATTA
1 TAATATTA
7253932 TTTTATATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
12 5 0.13
13 23 0.59
16 11 0.28
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (13 bp):
TAATATTAAAAGA
Found at i:7254606 original size:34 final size:33
Alignment explanation
Indices: 7254563--7254635 Score: 110
Period size: 34 Copynumber: 2.2 Consensus size: 33
7254553 TTCGACTTGT
*
7254563 GAATTTCATTTTCGAGTTGCGATTTTCATGTTGC
1 GAATTTCATTTTCGAGTTG-GAGTTTCATGTTGC
* *
7254597 GAATTTCATTTTCGAGTTGTAGTTTCGTGTTGC
1 GAATTTCATTTTCGAGTTGGAGTTTCATGTTGC
7254630 GAATTT
1 GAATTT
7254636 AAGTTTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 17 0.47
34 19 0.53
ACGTcount: A:0.18, C:0.12, G:0.22, T:0.48
Consensus pattern (33 bp):
GAATTTCATTTTCGAGTTGGAGTTTCATGTTGC
Found at i:7254615 original size:20 final size:20
Alignment explanation
Indices: 7254530--7254615 Score: 60
Period size: 20 Copynumber: 4.6 Consensus size: 20
7254520 TTTGGTTGCG
*
7254530 ATTTTCGCGTTGCGAA-TTC
1 ATTTTCGAGTTGCGAATTTC
** * *
7254549 AAAATTCGACTTGTGAATTTC
1 -ATTTTCGAGTTGCGAATTTC
*
7254570 ATTTTCGAGTTGCGATTTTC
1 ATTTTCGAGTTGCGAATTTC
7254590 A---T---GTTGCGAATTTC
1 ATTTTCGAGTTGCGAATTTC
7254604 ATTTTCGAGTTG
1 ATTTTCGAGTTG
7254616 TAGTTTCGTG
Statistics
Matches: 48, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
14 12 0.25
17 2 0.04
20 31 0.65
21 3 0.06
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (20 bp):
ATTTTCGAGTTGCGAATTTC
Found at i:7256198 original size:42 final size:42
Alignment explanation
Indices: 7256132--7256287 Score: 151
Period size: 42 Copynumber: 3.8 Consensus size: 42
7256122 TGATCGACAA
* * *
7256132 GATTCTCCACTTCGACACCAAGATCCATCACCTCATCAAGTC
1 GATTCTCCACTTCGACTCCGAGATCCATCACCTCATCAAGCC
*
7256174 GATTCTCCACTTCGACTCCGAGATCCATCACCTCATCGAGCC
1 GATTCTCCACTTCGACTCCGAGATCCATCACCTCATCAAGCC
* * * * *
7256216 AATTCTACACCTCGACAT-CGAGAGCCATCACCTC-T--AGCT
1 GATTCTCCACTTCGAC-TCCGAGATCCATCACCTCATCAAGCC
* * *
7256255 GACTCTACACCTCGACAT-CGAGATCCATCACCT
1 GATTCTCCACTTCGAC-TCCGAGATCCATCACCT
7256288 ATTCTATCAC
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.33
41 1 0.01
42 66 0.65
43 1 0.01
ACGTcount: A:0.26, C:0.38, G:0.12, T:0.23
Consensus pattern (42 bp):
GATTCTCCACTTCGACTCCGAGATCCATCACCTCATCAAGCC
Found at i:7256409 original size:21 final size:21
Alignment explanation
Indices: 7256383--7256454 Score: 92
Period size: 21 Copynumber: 3.4 Consensus size: 21
7256373 CTCCACCTCC
7256383 ACGTGATGAGTTAGATGCTTT
1 ACGTGATGAGTTAGATGCTTT
*
7256404 ACGTGATGAGGTCA-ATGCTTT
1 ACGTGATGA-GTTAGATGCTTT
* *
7256425 ACGTGATGAGGTCGATGCTTT
1 ACGTGATGAGTTAGATGCTTT
*
7256446 ACGTTATGA
1 ACGTGATGA
7256455 CAATGGTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
20 1 0.02
21 40 0.91
22 3 0.07
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (21 bp):
ACGTGATGAGTTAGATGCTTT
Found at i:7256492 original size:21 final size:21
Alignment explanation
Indices: 7256468--7256577 Score: 89
Period size: 21 Copynumber: 5.2 Consensus size: 21
7256458 TGGTGCATGG
7256468 CGTGATGAGGTAGG-GTCTTTA
1 CGTGATGAGGTAGGTG-CTTTA
* * **
7256489 CGTGGTGAGGTAGTTATTTTA
1 CGTGATGAGGTAGGTGCTTTA
* **
7256510 CATGATGA-CAATGGTGCTTTA
1 CGTGATGAGGTA-GGTGCTTTA
* *
7256531 CGTGGTGAGGTAGATGCTTTA
1 CGTGATGAGGTAGGTGCTTTA
* *
7256552 CGTGATGAGGTAGGTGATCTA
1 CGTGATGAGGTAGGTGCTTTA
7256573 CGTGA
1 CGTGA
7256578 GATTGTTTCA
Statistics
Matches: 66, Mismatches: 20, Indels: 6
0.72 0.22 0.07
Matches are distributed among these distances:
20 1 0.02
21 64 0.97
22 1 0.02
ACGTcount: A:0.22, C:0.10, G:0.35, T:0.34
Consensus pattern (21 bp):
CGTGATGAGGTAGGTGCTTTA
Found at i:7256510 original size:63 final size:63
Alignment explanation
Indices: 7256404--7256564 Score: 182
Period size: 63 Copynumber: 2.6 Consensus size: 63
7256394 TAGATGCTTT
* * ** * *
7256404 ACGTGATGAGGTCA-ATGCTTTACGTGATGAGGTCGATGCTTTACGTTATGACAATGGTGCATG
1 ACGTGATGAGGT-AGATGCTTTACGTGATGAGGTAGTTATTTTACATGATGACAATGGTGCATG
* * * * *
7256467 GCGTGATGAGGTAG-GGTCTTTACGTGGTGAGGTAGTTATTTTACATGATGACAATGGTGCTTT
1 ACGTGATGAGGTAGATG-CTTTACGTGATGAGGTAGTTATTTTACATGATGACAATGGTGCATG
*
7256530 ACGTGGTGAGGTAGATGCTTTACGTGATGAGGTAG
1 ACGTGATGAGGTAGATGCTTTACGTGATGAGGTAG
7256565 GTGATCTACG
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
62 2 0.03
63 77 0.96
64 1 0.01
ACGTcount: A:0.22, C:0.11, G:0.34, T:0.33
Consensus pattern (63 bp):
ACGTGATGAGGTAGATGCTTTACGTGATGAGGTAGTTATTTTACATGATGACAATGGTGCATG
Found at i:7256516 original size:42 final size:43
Alignment explanation
Indices: 7256470--7256565 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
7256460 GTGCATGGCG
* *
7256470 TGATGAGGTAGGGT-CTTTACGTGGTGAGGTAGTTATTTTACA
1 TGATGAGGTAGGGTGCTTTACGTGGTGAGGTAGATACTTTACA
** * * *
7256512 TGATGA-CAATGGTGCTTTACGTGGTGAGGTAGATGCTTTACG
1 TGATGAGGTAGGGTGCTTTACGTGGTGAGGTAGATACTTTACA
7256554 TGATGAGGTAGG
1 TGATGAGGTAGG
7256566 TGATCTACGT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
41 4 0.10
42 36 0.86
43 2 0.05
ACGTcount: A:0.22, C:0.08, G:0.35, T:0.34
Consensus pattern (43 bp):
TGATGAGGTAGGGTGCTTTACGTGGTGAGGTAGATACTTTACA
Found at i:7256694 original size:4 final size:4
Alignment explanation
Indices: 7256685--7256734 Score: 82
Period size: 4 Copynumber: 12.5 Consensus size: 4
7256675 TTTTTCGACA
* *
7256685 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT GTAT TAAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
7256733 TT
1 TT
7256735 TTAGCAGCCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:7258164 original size:20 final size:20
Alignment explanation
Indices: 7258120--7258318 Score: 135
Period size: 20 Copynumber: 10.2 Consensus size: 20
7258110 GCAACACAAA
* *
7258120 AATT-GCAACTCGATATTC-
1 AATTCGCAACTCGAAAATCG
* *
7258138 AATTTCGTAACTCGAAAATTG
1 AA-TTCGCAACTCGAAAATCG
* *
7258159 AATTCGCAACGCAAAAATCG
1 AATTCGCAACTCGAAAATCG
* * *
7258179 ATTTCGCAATTCGAAAATCA
1 AATTCGCAACTCGAAAATCG
*
7258199 AATTCGCAACACGAAAATCG
1 AATTCGCAACTCGAAAATCG
* * * *
7258219 ATTTCACAATTCGAAAATCA
1 AATTCGCAACTCGAAAATCG
*
7258239 AATTCGCAACACG--AA---
1 AATTCGCAACTCGAAAATCG
* *
7258254 AA-TCGCAACTCAAAAATGG
1 AATTCGCAACTCGAAAATCG
* *
7258273 AATTCGCAATTCGAAAATCA
1 AATTCGCAACTCGAAAATCG
* *
7258293 AATTTGCAACACGAAAATCG
1 AATTCGCAACTCGAAAATCG
7258313 TAATTC
1 -AATTC
7258319 TCAAGTTATT
Statistics
Matches: 134, Mismatches: 37, Indels: 17
0.71 0.20 0.09
Matches are distributed among these distances:
14 8 0.06
15 2 0.01
16 2 0.01
18 4 0.03
19 4 0.03
20 108 0.81
21 6 0.04
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (20 bp):
AATTCGCAACTCGAAAATCG
Found at i:7258183 original size:40 final size:40
Alignment explanation
Indices: 7258139--7258258 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
7258129 TCGATATTCA
* * ** * *
7258139 ATTTCGTAACTCGAAAATTGAATTCGCAACGCAAAAATCG
1 ATTTCGCAATTCGAAAATCAAATTCGCAACACGAAAATCG
7258179 ATTTCGCAATTCGAAAATCAAATTCGCAACACGAAAATCG
1 ATTTCGCAATTCGAAAATCAAATTCGCAACACGAAAATCG
*
7258219 ATTTCACAATTCGAAAATCAAATTCGCAACACGAAAATCG
1 ATTTCGCAATTCGAAAATCAAATTCGCAACACGAAAATCG
7258259 CAACTCAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.23
Consensus pattern (40 bp):
ATTTCGCAATTCGAAAATCAAATTCGCAACACGAAAATCG
Found at i:7258270 original size:54 final size:54
Alignment explanation
Indices: 7258202--7258312 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 54
7258192 AAAATCAAAT
* *
7258202 TCGCAACACGAAAATCGATTTCACAATTCGAAAATCAAATTCGCAACACGAAAA
1 TCGCAACACAAAAATCGAATTCACAATTCGAAAATCAAATTCGCAACACGAAAA
* * * *
7258256 TCGCAACTCAAAAATGGAATTCGCAATTCGAAAATCAAATTTGCAACACGAAAA
1 TCGCAACACAAAAATCGAATTCACAATTCGAAAATCAAATTCGCAACACGAAAA
7258310 TCG
1 TCG
7258313 TAATTCTCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.20
Consensus pattern (54 bp):
TCGCAACACAAAAATCGAATTCACAATTCGAAAATCAAATTCGCAACACGAAAA
Found at i:7260425 original size:40 final size:40
Alignment explanation
Indices: 7260376--7260500 Score: 108
Period size: 40 Copynumber: 3.1 Consensus size: 40
7260366 GTTGTTTTGT
* * *
7260376 GAAATTAAAATTCGTGTTACGAATTCGAAAATCGAGTTGC
1 GAAAATAAAATTCGTGTTACGAATTCAAAAATCGAGTTAC
* * * *
7260416 GAAAATAAAATTCGCGTTGCGAATTTAAAAATCGTGTTAC
1 GAAAATAAAATTCGTGTTACGAATTCAAAAATCGAGTTAC
* ** * *
7260456 GAAAA-AGAAATTTGTGTTGTGAAATCATCAAATTCGAGTTAC
1 GAAAATA-AAATTCGTGTTACGAATTCA--AAAATCGAGTTAC
7260498 GAA
1 GAA
7260501 TTTGACTTAT
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 53 0.78
42 14 0.21
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (40 bp):
GAAAATAAAATTCGTGTTACGAATTCAAAAATCGAGTTAC
Found at i:7260458 original size:20 final size:20
Alignment explanation
Indices: 7260380--7260458 Score: 68
Period size: 20 Copynumber: 4.0 Consensus size: 20
7260370 TTTTGTGAAA
*
7260380 TTAAAATTCGTGTTACGAAT
1 TTAAAAATCGTGTTACGAAT
** * * *
7260400 TCGAAAATCGAGTTGCGAAA
1 TTAAAAATCGTGTTACGAAT
* * * *
7260420 ATAAAATTCGCGTTGCGAAT
1 TTAAAAATCGTGTTACGAAT
7260440 TTAAAAATCGTGTTACGAA
1 TTAAAAATCGTGTTACGAA
7260459 AAAGAAATTT
Statistics
Matches: 43, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (20 bp):
TTAAAAATCGTGTTACGAAT
Found at i:7261350 original size:13 final size:13
Alignment explanation
Indices: 7261332--7261375 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
7261322 GTTGCTTTTG
7261332 TTTAATGATGGAA
1 TTTAATGATGGAA
7261345 TTTAATGATGGAA
1 TTTAATGATGGAA
*
7261358 TTTAATGATAGAA
1 TTTAATGATGGAA
7261371 TTTAA
1 TTTAA
7261376 GTTGCTGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (13 bp):
TTTAATGATGGAA
Found at i:7261498 original size:109 final size:110
Alignment explanation
Indices: 7261299--7261544 Score: 413
Period size: 109 Copynumber: 2.2 Consensus size: 110
7261289 GTACCGTTAC
* * *
7261299 TTTTGTATAAGGAACGTTTTTTTGTTGCTTTTGTTTAATGATGGAATTTAATGATGGAATTTAAT
1 TTTTGTTTAAGGAATGTGTTTTTGTTGCTTTTGTTTAATGATGG----TAATGATGGAATTTAAT
7261364 GATAGAATTTAAGTTGCTGATGGAATTAATGTGTTGCTGCCAAAGTTGT
62 GATAGAATTTAAGTTGCTGATGGAATTAATGTGTTGCTGCCAAAGTTGT
7261413 TTTTGTTTAAGGAATGTGTTTTTGTTGCTTTTGTTTAATGATGG-AATGATGGAATTTAATGATA
1 TTTTGTTTAAGGAATGTGTTTTTGTTGCTTTTGTTTAATGATGGTAATGATGGAATTTAATGATA
7261477 GAATTTAAGTTGCTGATGGAATTAATGTGTTGCTGCCAAAGTTGT
66 GAATTTAAGTTGCTGATGGAATTAATGTGTTGCTGCCAAAGTTGT
*
7261522 TTTTGTTTAAGGGATGTGTTTTT
1 TTTTGTTTAAGGAATGTGTTTTT
7261545 TTAGGGAAAT
Statistics
Matches: 128, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
109 87 0.68
114 41 0.32
ACGTcount: A:0.25, C:0.04, G:0.24, T:0.46
Consensus pattern (110 bp):
TTTTGTTTAAGGAATGTGTTTTTGTTGCTTTTGTTTAATGATGGTAATGATGGAATTTAATGATA
GAATTTAAGTTGCTGATGGAATTAATGTGTTGCTGCCAAAGTTGT
Found at i:7261801 original size:38 final size:37
Alignment explanation
Indices: 7261757--7261875 Score: 109
Period size: 38 Copynumber: 3.2 Consensus size: 37
7261747 TGAAAATAAA
**
7261757 TTTGTTTGAAGAGGAACTATCTCAAGTGAGATAAAATT
1 TTTGTTTGAAGAAAAACTATCTCAAGTGAGAT-AAATT
** *
7261795 TTTGTTTCG-AGCTAAACTATCTAAAGTGAGATGAAA--
1 TTTGTTT-GAAGAAAAACTATCTCAAGTGAGAT-AAATT
* * *
7261831 CTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
1 TTTGTTTGAAGAAAAACTATCTCAAGTGAGATAAATT
7261868 TCTTGTTT
1 T-TTGTTT
7261876 CAAGTGAAAC
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
35 3 0.05
36 25 0.39
38 35 0.55
39 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (37 bp):
TTTGTTTGAAGAAAAACTATCTCAAGTGAGATAAATT
Found at i:7261886 original size:38 final size:38
Alignment explanation
Indices: 7261775--7261887 Score: 110
Period size: 38 Copynumber: 3.0 Consensus size: 38
7261765 AAGAGGAACT
* *
7261775 ATCTCAAGTGAGATAAAATTT-TTGTTTCGAGCTAAACT
1 ATCTCAAGTGAGATAAAATTTCTTGTTTCAAG-TAAACA
* * * *
7261813 ATCTAAAGTGAGATGAAA---CTTGTTTTAAGAAAAACA
1 ATCTCAAGTGAGATAAAATTTCTTGTTTCAAG-TAAACA
7261849 ATCTCAAGTGAGAT-AAATTTCTTGTTTCAAGTGAAACA
1 ATCTCAAGTGAGATAAAATTTCTTGTTTCAAGT-AAACA
7261887 A
1 A
7261888 ATTCAAATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
35 3 0.05
36 25 0.42
38 32 0.53
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.33
Consensus pattern (38 bp):
ATCTCAAGTGAGATAAAATTTCTTGTTTCAAGTAAACA
Found at i:7262091 original size:75 final size:75
Alignment explanation
Indices: 7261917--7262505 Score: 680
Period size: 75 Copynumber: 7.8 Consensus size: 75
7261907 AGGGAAATTT
* * * * * * * *
7261917 TCTCAAGCGAGATGAAATTTATTTTAAGAAAAATAATATCGAGTGAAATAAAATTTCTTGTTTCG
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTT-ATGTTTCG
* *
7261982 AGTAAAAACTA
65 AGTGAAAACTG
* * * **
7261993 TTTCAAACAAGATAAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
7262058 GTGAAAACTG
66 GTGAAAACTG
* * * * *
7262068 TCTCAAGCGAGGCGAAGTTTGTTTTAAGAAAATCAATTTCAAGTGAGATAAAATTTCTATTTCGA
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
7262133 GTGAAAACTG
66 GTGAAAACTG
* * * *
7262143 TCTTAAG-AAGACGAAGTTTGTTTTAAGAAAAAAATATCTTAAGTGAGATAAAATTTATGTTTCG
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACA-ATCTCAAGTGAGATAAAATTTATGTTTCG
7262207 AGTGAAAACTG
65 AGTGAAAACTG
* ** * ** * * * *
7262218 TCTCGAGCGAGATAAAGTTTGTATCGAGTGAAAACAATCTCGAGTGAAATAAAATTTCTTGTTTC
1 TCTCAAGCGAGACGAAGTTTGTTTTAAG-AAAAACAATCTCAAGTGAGATAAAATTT-ATGTTTC
*
7262283 GAGTAAAAACTG
64 GAGTGAAAACTG
* * * *
7262295 TTTCAAGTGAGACAAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTCTGTTTCGA
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
7262360 GTGAAAACTG
66 GTGAAAACTG
* * *
7262370 TCTCAAGCGAGGCGAAGTTTGTTTTAAGAAAAATAATCTCAAGTGAGATAAAAATTT-TATTTCG
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAAATTTATGTTTCG
7262434 AGTGAAAACTG
65 AGTGAAAACTG
* * ** * *
7262445 TCTCAAG-AAGACGAAGTTTGTTTTAAAAAAAATTACCTCAAGTGATATAAAATTTATGTTT
1 TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTT
7262506 GACCTATATA
Statistics
Matches: 435, Mismatches: 72, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
73 7 0.02
74 62 0.14
75 213 0.49
76 110 0.25
77 43 0.10
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (75 bp):
TCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
GTGAAAACTG
Found at i:7262245 original size:37 final size:38
Alignment explanation
Indices: 7262029--7262451 Score: 229
Period size: 39 Copynumber: 11.2 Consensus size: 38
7262019 AGAAAAACAA
*
7262029 TCTCAAGTGAGATAAAATTTATGTTTCGAGTGAAAACTG
1 TCTCAAGTGAGATAAAAGTT-TGTTTCGAGTGAAAACTG
* *** * * **
7262068 TCTCAAGCGAG-GCGAAGTTTGTTT-TA-AGAAAATCAA
1 TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAA-CTG
* * *
7262104 TTTCAAGTGAGATAAAATTTCTATTTCGAGTGAAAACTG
1 TCTCAAGTGAGATAAAAGTT-TGTTTCGAGTGAAAACTG
* * ** ** ** * *
7262143 TCTTAAG-AAGA-CGAAGTTTGTTTTAAGAAAAAAATA
1 TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAACTG
* *
7262179 TCTTAAGTGAGATAAAATTTATGTTTCGAGTGAAAACTG
1 TCTCAAGTGAGATAAAAGTT-TGTTTCGAGTGAAAACTG
* * * **
7262218 TCTCGAGCGAGAT-AAAGTTTGTATCGAGTGAAAACAA
1 TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAACTG
* * * *
7262255 TCTCGAGTGAAATAAAATTTCTTGTTTCGAGTAAAAACTG
1 TCTCAAGTGAGATAAAA-GT-TTGTTTCGAGTGAAAACTG
* * ** * **
7262295 TTTCAAGTGAGA-CAAAGTTTGTTTTAAG-AAAAACAA
1 TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAACTG
*
7262331 TCTCAAGTGAGATAAAATTTCTGTTTCGAGTGAAAACTG
1 TCTCAAGTGAGATAAAAGTT-TGTTTCGAGTGAAAACTG
* *** * * * *
7262370 TCTCAAGCGAG-GCGAAGTTTGTTT-TA-AGAAAAATAA
1 TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAACT-G
* *
7262406 TCTCAAGTGAGATAAAAATTTTATTTCGAGTGAAAACTG
1 TCTCAAGTGAGAT-AAAAGTTTGTTTCGAGTGAAAACTG
7262445 TCTCAAG
1 TCTCAAG
7262452 AAGACGAAGT
Statistics
Matches: 272, Mismatches: 93, Indels: 38
0.67 0.23 0.09
Matches are distributed among these distances:
35 11 0.04
36 57 0.21
37 60 0.22
38 43 0.16
39 66 0.24
40 35 0.13
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (38 bp):
TCTCAAGTGAGATAAAAGTTTGTTTCGAGTGAAAACTG
Found at i:7262339 original size:227 final size:224
Alignment explanation
Indices: 7261900--7262505 Score: 691
Period size: 227 Copynumber: 2.7 Consensus size: 224
7261890 TCAAATTTTA
* * * * * * * *
7261900 TATTTCGAG-GGAAATTTTCTCAAGCGAGATGAAATTTATTTTAAGAAAAATAATATC-GAGTGA
1 TATTTCGAGTGAAAACTGTCTCAAGCAAGACGAAGTTTGTTTTAAGAAAAA-AATATCTAAGTGA
* * * * * *
7261963 AATAAAATTTCTTGTTTCGAGTAAAAACTATTTCAAACAAGATAAAGTTTGTTTTAAGAAAAACA
65 GATAAAA-TT-TTGTTTCGAGTGAAAACTGTCTCAAACAAGATAAAGTTTGTATCAAGAAAAACA
* * * *
7262028 ATCTCAAGTGAGATAAAATTTATGTTTCGAGTGAAAACTGTCTCAAGCGAGGCGAAGTTTGTTTT
128 ATCTCAAGTGAAATAAAATTTATGTTTCGAGTAAAAACTGTCTCAAGCGAGACAAAGTTTGTTTT
* *
7262093 AAGAAAATCAATTTCAAGTGAGATAAAATTTC
193 AAGAAAAACAATCTCAAGTGAGATAAAATTTC
*
7262125 TATTTCGAGTGAAAACTGTCTTAAG-AAGACGAAGTTTGTTTTAAGAAAAAAATATCTTAAGTGA
1 TATTTCGAGTGAAAACTGTCTCAAGCAAGACGAAGTTTGTTTTAAGAAAAAAATATC-TAAGTGA
* * * * *
7262189 GATAAAATTTATGTTTCGAGTGAAAACTGTCTCGAGCGAGATAAAGTTTGTATCGAGTGAAAACA
65 GATAAAATTT-TGTTTCGAGTGAAAACTGTCTCAAACAAGATAAAGTTTGTATCAAG-AAAAACA
* * * *
7262254 ATCTCGAGTGAAATAAAATTTCTTGTTTCGAGTAAAAACTGTTTCAAGTGAGACAAAGTTTGTTT
128 ATCTCAAGTGAAATAAAATTT-ATGTTTCGAGTAAAAACTGTCTCAAGCGAGACAAAGTTTGTTT
7262319 TAAGAAAAACAATCTCAAGTGAGATAAAATTTC
192 TAAGAAAAACAATCTCAAGTGAGATAAAATTTC
* * * *
7262352 TGTTTCGAGTGAAAACTGTCTCAAGCGAGGCGAAGTTTGTTTTAAGAAAAATA-ATCTCAAGTGA
1 TATTTCGAGTGAAAACTGTCTCAAGCAAGACGAAGTTTGTTTTAAGAAAAAAATATCT-AAGTGA
* * ** * * * **
7262416 GATAAAAATTTTATTTCGAGTGAAAACTGTCTC-AAGAAGACGAAGTTTGTTTTAAAAAAAATTA
65 GAT-AAAATTTTGTTTCGAGTGAAAACTGTCTCAAACAAGATAAAGTTTGTATCAAGAAAAACAA
* *
7262480 CCTCAAGTGATATAAAATTTATGTTT
129 TCTCAAGTGAAATAAAATTTATGTTT
7262506 GACCTATATA
Statistics
Matches: 320, Mismatches: 52, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
224 12 0.04
225 91 0.28
226 62 0.19
227 124 0.39
228 31 0.10
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (224 bp):
TATTTCGAGTGAAAACTGTCTCAAGCAAGACGAAGTTTGTTTTAAGAAAAAAATATCTAAGTGAG
ATAAAATTTTGTTTCGAGTGAAAACTGTCTCAAACAAGATAAAGTTTGTATCAAGAAAAACAATC
TCAAGTGAAATAAAATTTATGTTTCGAGTAAAAACTGTCTCAAGCGAGACAAAGTTTGTTTTAAG
AAAAACAATCTCAAGTGAGATAAAATTTC
Found at i:7267579 original size:16 final size:16
Alignment explanation
Indices: 7267558--7267588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7267548 AAATGAAGGG
7267558 TAAAAATAAAATAAAA
1 TAAAAATAAAATAAAA
*
7267574 TAAAAATAAATTAAA
1 TAAAAATAAAATAAA
7267589 GAACTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAAATAAAATAAAA
Found at i:7269335 original size:33 final size:33
Alignment explanation
Indices: 7269292--7269386 Score: 163
Period size: 33 Copynumber: 2.9 Consensus size: 33
7269282 GAGGCGTAGT
*
7269292 TGATTCGAAATGTCGTGAATCGAGCAAAGTTGC
1 TGATTCGAAATGTCATGAATCGAGCAAAGTTGC
*
7269325 TGATTTGAAATGTCATGAATCGAGCAAAGTTGC
1 TGATTCGAAATGTCATGAATCGAGCAAAGTTGC
*
7269358 TGATTCGAAATGTCATGAATCTAGCAAAG
1 TGATTCGAAATGTCATGAATCGAGCAAAG
7269387 GTTGAACAAG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (33 bp):
TGATTCGAAATGTCATGAATCGAGCAAAGTTGC
Found at i:7269799 original size:38 final size:37
Alignment explanation
Indices: 7269671--7269806 Score: 130
Period size: 38 Copynumber: 3.6 Consensus size: 37
7269661 GAAAATAAAT
* * *
7269671 TTGTTTGAAGAGAAACTATCTCAAGTGAGATAAATTTT
1 TTGTTTCAAGAGAAACAATCTCAAGTGAGATAAA-TTC
* ** * * *
7269709 TTGTTTCGAGTCAAACTATCTCAAGCGAGATAAA-AC
1 TTGTTTCAAGAGAAACAATCTCAAGTGAGATAAATTC
* *
7269745 TTGTTTTAAGAAAAACAATCTCAAGTGAGATAAACTTC
1 TTGTTTCAAGAGAAACAATCTCAAGTGAGATAAA-TTC
* *
7269783 TTGTTTCAAGTGAAACAATTTCAA
1 TTGTTTCAAGAGAAACAATCTCAA
7269807 ATTTTATATT
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
36 28 0.36
38 50 0.64
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (37 bp):
TTGTTTCAAGAGAAACAATCTCAAGTGAGATAAATTC
Found at i:7269939 original size:36 final size:36
Alignment explanation
Indices: 7269898--7270161 Score: 122
Period size: 36 Copynumber: 7.1 Consensus size: 36
7269888 TGTTTCGAGT
*
7269898 AAAAACTGTCTTAAGCGAGACAAAGTTTGTTATAAG
1 AAAAACTGTCTCAAGCGAGACAAAGTTTGTTATAAG
** * * * *
7269934 AAAAACAATCTCAAGTGAGATAAAATTTATGTTCT-AG
1 AAAAACTGTCTCAAGCGAGA-CAAAGTT-TGTTATAAG
* * *
7269971 TGAAAACTGTCTCAAGCGAGGCAAAGTTTGTTTTAAG
1 -AAAAACTGTCTCAAGCGAGACAAAGTTTGTTATAAG
* * * *
7270008 AAAAA-TGATCTCAAGTGAGATAAAATTTCTGTT-TCGAG
1 AAAAACTG-TCTCAAGCGAGA-CAAAGTT-TGTTAT-AAG
* * * * * *
7270046 TGAAAATTGTCTCAAG-AAGACGAAGTTTGTTTTAGG
1 -AAAAACTGTCTCAAGCGAGACAAAGTTTGTTATAAG
* * * * * * *
7270082 AAAAACTATCTCTAGTGAGATAAAATTTATGTTTTGAG
1 AAAAACTGTCTCAAGCGAGA-CAAAGTT-TGTTATAAG
* * * *
7270120 TGAAATCTGTCTCAAGCGAGACGAAGTTTGTTTTAAG
1 -AAAAACTGTCTCAAGCGAGACAAAGTTTGTTATAAG
7270157 AAAAA
1 AAAAA
7270162 TAATCTCGAG
Statistics
Matches: 164, Mismatches: 49, Indels: 30
0.67 0.20 0.12
Matches are distributed among these distances:
35 13 0.08
36 46 0.28
37 37 0.23
38 40 0.24
39 26 0.16
40 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (36 bp):
AAAAACTGTCTCAAGCGAGACAAAGTTTGTTATAAG
Found at i:7270178 original size:75 final size:75
Alignment explanation
Indices: 7269824--7270562 Score: 1036
Period size: 75 Copynumber: 9.8 Consensus size: 75
7269814 ATTTCAAGGG
* * * * * *
7269824 AAACTTTCTCAAGCGAGATGAAATTTGTTTTAAGAAAAACAATCTCGAGTAAAATAAAATTTCTT
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTC-T
*
7269889 GTTTCGAGTAA
65 GTTTCGAGTGA
* * * * * *
7269900 AAACTGTCTTAAGCGAGACAAAGTTTGTTATAAGAAAAACAATCTCAAGTGAGATAAAATTTATG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
*
7269965 -TTCTAGTGA
66 TTTCGAGTGA
* * * *
7269974 AAACTGTCTCAAGCGAGGCAAAGTTTGTTTTAAGAAAAATGATCTCAAGTGAGATAAAATTTCTG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
7270039 TTTCGAGTGA
66 TTTCGAGTGA
* * * * *
7270049 AAATTGTCTCAAG-AAGACGAAGTTTGTTTTAGGAAAAACT-ATCTCTAGTGAGATAAAATTTAT
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAA-TAATCTCGAGTGAGATAAAATTTCT
*
7270112 GTTTTGAGTGA
65 GTTTCGAGTGA
*
7270123 AATCTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
7270188 TTTCGAGTGA
66 TTTCGAGTGA
* * *
7270198 AAACTATCTCAAGCGAGACGAAGTTTGTTTTAAGGAAAATAATTTCGAGTGAGATAAAATTTCTG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
7270263 TTTCGAGTGA
66 TTTCGAGTGA
* *
7270273 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGGAAAATAATCTCGAGTGAGATAAAATTTTTG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
7270338 TTTCGAGTGA
66 TTTCGAGTGA
* *
7270348 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAGAAAAAAAATCTTGAGTGAGATAAAATTT
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTT---AAGAAAAATAATCTCGAGTGAGATAAAATTT
* *
7270413 CTTTTTCGAGTAA
63 CTGTTTCGAGTGA
* * * *
7270426 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATTTCAAGTGATATAAAATTTATG
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
7270491 TTTCGAGTGA
66 TTTCGAGTGA
** *
7270501 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAA-AAAAGCAATCTCAAGTGAGATAAAATTTC
1 AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTC
7270563 ATATTAAATG
Statistics
Matches: 596, Mismatches: 60, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
74 154 0.26
75 320 0.54
76 53 0.09
78 69 0.12
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (75 bp):
AAACTGTCTCAAGCGAGACGAAGTTTGTTTTAAGAAAAATAATCTCGAGTGAGATAAAATTTCTG
TTTCGAGTGA
Found at i:7272855 original size:14 final size:14
Alignment explanation
Indices: 7272836--7272870 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
7272826 AGCTTAATAA
7272836 GACCTCACTATATT
1 GACCTCACTATATT
7272850 GACCTCACTATATT
1 GACCTCACTATATT
7272864 GACCTCA
1 GACCTCA
7272871 ACTCCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (14 bp):
GACCTCACTATATT
Found at i:7277697 original size:13 final size:13
Alignment explanation
Indices: 7277679--7277705 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7277669 TCAAGATATA
7277679 GCCAAAGCTTTTG
1 GCCAAAGCTTTTG
7277692 GCCAAAGCTTTTG
1 GCCAAAGCTTTTG
7277705 G
1 G
7277706 TTATATAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCAAAGCTTTTG
Found at i:7278619 original size:16 final size:16
Alignment explanation
Indices: 7278598--7278632 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7278588 ATTTTATATA
*
7278598 TATAGGAAATACATTG
1 TATAGGAAATACATGG
7278614 TATAGGAAATACATGG
1 TATAGGAAATACATGG
7278630 TAT
1 TAT
7278633 TTTAGATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (16 bp):
TATAGGAAATACATGG
Found at i:7278975 original size:27 final size:27
Alignment explanation
Indices: 7278945--7279033 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
7278935 GTACAATTTT
*
7278945 ATGTATATATAATATATTGATGCATGA
1 ATGTATATATAATATATTGATGAATGA
*
7278972 ATGTAGTATGTATATTATATAT-ATGTAAT-A
1 ATGTA-TA--TATAATATAT-TGATG-AATGA
* *
7279002 ATGTATATATAATATATTGATGGATGT
1 ATGTATATATAATATATTGATGAATGA
7279029 ATGTA
1 ATGTA
7279034 GTATGTATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
26 3 0.06
27 22 0.44
28 2 0.04
29 2 0.04
30 18 0.36
31 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.44
Consensus pattern (27 bp):
ATGTATATATAATATATTGATGAATGA
Found at i:7279020 original size:57 final size:58
Alignment explanation
Indices: 7278907--7279055 Score: 210
Period size: 57 Copynumber: 2.5 Consensus size: 58
7278897 AATGTACAAT
* * *
7278907 TGAATGTAATAATGTATATTATATCTATGTACAATTTTATGTATATATAATATATTGATGCA
1 TGAATGTAGT-ATGTATATTATATATATGT--AA-TTAATGTATATATAATATATTGATGCA
*
7278969 TGAATGTAGTATGTATATTATATATATGTAA-TAATGTATATATAATATATTGATGGA
1 TGAATGTAGTATGTATATTATATATATGTAATTAATGTATATATAATATATTGATGCA
*
7279026 TGTATGTAGTATGTATATTATATATATGTA
1 TGAATGTAGTATGTATATTATATATATGTA
7279056 TGTAGTATGT
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
57 53 0.65
59 2 0.02
61 18 0.22
62 9 0.11
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (58 bp):
TGAATGTAGTATGTATATTATATATATGTAATTAATGTATATATAATATATTGATGCA
Found at i:7279650 original size:2 final size:2
Alignment explanation
Indices: 7279580--7279631 Score: 51
Period size: 2 Copynumber: 28.5 Consensus size: 2
7279570 AGTCCCTCAT
* *
7279580 TA TA TA TA TA TA TA TA TA TA TA TA T- TA -A TG TA -A TA -A TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7279618 TA TA T- TA TA TA TA T
1 TA TA TA TA TA TA TA T
7279632 GTACAATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
1 5 0.12
2 36 0.88
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7281407 original size:42 final size:44
Alignment explanation
Indices: 7281360--7281444 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 44
7281350 CCACCATCTC
7281360 CCACATCATCCTGCTCTTGTGTTG-G-AGTACCTGGAATATCAT
1 CCACATCATCCTGCTCTTGTGTTGAGCAGTACCTGGAATATCAT
* * *
7281402 CCACATCCTCTTGTTCTTGTGTTGAAGCAGTACCTGGAATATC
1 CCACATCATCCTGCTCTTGTGTTG-AGCAGTACCTGGAATATC
7281445 TTCTGTATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 21 0.57
44 1 0.03
45 15 0.41
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (44 bp):
CCACATCATCCTGCTCTTGTGTTGAGCAGTACCTGGAATATCAT
Found at i:7283384 original size:16 final size:16
Alignment explanation
Indices: 7283363--7283397 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7283353 ATTTTATATA
*
7283363 TATAGGAAATACATTG
1 TATAGGAAATACATGG
7283379 TATAGGAAATACATGG
1 TATAGGAAATACATGG
7283395 TAT
1 TAT
7283398 TTTAGATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (16 bp):
TATAGGAAATACATGG
Found at i:7283740 original size:27 final size:27
Alignment explanation
Indices: 7283710--7283798 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
7283700 GTACAATTTT
*
7283710 ATGTATATATAATATATTGATGCATGA
1 ATGTATATATAATATATTGATGAATGA
*
7283737 ATGTAGTATGTATATTATATAT-ATGTAAT-A
1 ATGTA-TA--TATAATATAT-TGATG-AATGA
* *
7283767 ATGTATATATAATATATTGATGGATGT
1 ATGTATATATAATATATTGATGAATGA
7283794 ATGTA
1 ATGTA
7283799 GTATGTATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
26 3 0.06
27 22 0.44
28 2 0.04
29 2 0.04
30 18 0.36
31 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.44
Consensus pattern (27 bp):
ATGTATATATAATATATTGATGAATGA
Found at i:7283785 original size:57 final size:58
Alignment explanation
Indices: 7283672--7283820 Score: 210
Period size: 57 Copynumber: 2.5 Consensus size: 58
7283662 AATGTACAAT
* * *
7283672 TGAATGTAATAATGTATATTATATCTATGTACAATTTTATGTATATATAATATATTGATGCA
1 TGAATGTAGT-ATGTATATTATATATATGT--AA-TTAATGTATATATAATATATTGATGCA
*
7283734 TGAATGTAGTATGTATATTATATATATGTAA-TAATGTATATATAATATATTGATGGA
1 TGAATGTAGTATGTATATTATATATATGTAATTAATGTATATATAATATATTGATGCA
*
7283791 TGTATGTAGTATGTATATTATATATATGTA
1 TGAATGTAGTATGTATATTATATATATGTA
7283821 TGTAGTATGT
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
57 53 0.65
59 2 0.02
61 18 0.22
62 9 0.11
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (58 bp):
TGAATGTAGTATGTATATTATATATATGTAATTAATGTATATATAATATATTGATGCA
Found at i:7286168 original size:42 final size:44
Alignment explanation
Indices: 7286121--7286205 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 44
7286111 CCACCATCTC
7286121 CCACATCATCCTGCTCTTGTGTTG-G-AGTACCTGGAATATCAT
1 CCACATCATCCTGCTCTTGTGTTGAGCAGTACCTGGAATATCAT
* * *
7286163 CCACATCCTCTTGTTCTTGTGTTGAAGCAGTACCTGGAATATC
1 CCACATCATCCTGCTCTTGTGTTG-AGCAGTACCTGGAATATC
7286206 TTATGTATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 21 0.57
44 1 0.03
45 15 0.41
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (44 bp):
CCACATCATCCTGCTCTTGTGTTGAGCAGTACCTGGAATATCAT
Found at i:7288072 original size:22 final size:22
Alignment explanation
Indices: 7288041--7288099 Score: 109
Period size: 22 Copynumber: 2.7 Consensus size: 22
7288031 GCAGACTTTT
7288041 AAAGGGTTTTAGTTGGTTCACG
1 AAAGGGTTTTAGTTGGTTCACG
*
7288063 AAAGGTTTTTAGTTGGTTCACG
1 AAAGGGTTTTAGTTGGTTCACG
7288085 AAAGGGTTTTAGTTG
1 AAAGGGTTTTAGTTG
7288100 AGAGAAAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.24, C:0.07, G:0.31, T:0.39
Consensus pattern (22 bp):
AAAGGGTTTTAGTTGGTTCACG
Found at i:7288444 original size:23 final size:22
Alignment explanation
Indices: 7288399--7288445 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
7288389 ATATTGTTGG
* *
7288399 ATGTATGTAGTATGTATATTAT
1 ATGTATGTAATATGCATATTAT
7288421 ATGTATGTAATAATGCATATTAT
1 ATGTATGTAAT-ATGCATATTAT
7288444 AT
1 AT
7288446 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (22 bp):
ATGTATGTAATATGCATATTAT
Found at i:7288483 original size:35 final size:33
Alignment explanation
Indices: 7288399--7288485 Score: 106
Period size: 35 Copynumber: 2.6 Consensus size: 33
7288389 ATATTGTTGG
* *
7288399 ATGTATGTAGTATGTATATTATATGTATGTAATA
1 ATGTATGTA-TATATATATTATATATATGTAATA
7288433 ATGCATAT-TATATATATATATATATATATGTAATA
1 ATG--TATGTATATATATAT-TATATATATGTAATA
7288468 ATGTATGTATA-ATATATT
1 ATGTATGTATATATATATT
7288486 GGAAATACGG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
32 1 0.02
33 9 0.19
34 15 0.32
35 19 0.40
36 3 0.06
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.47
Consensus pattern (33 bp):
ATGTATGTATATATATATTATATATATGTAATA
Found at i:7288510 original size:26 final size:27
Alignment explanation
Indices: 7288479--7288531 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7288469 TGTATGTATA
*
7288479 ATATATTGG-AAATACGGGTTAACATC
1 ATATATAGGAAAATACGGGTTAACATC
*
7288505 ATATATAGGAAAATACGTGTTAACATC
1 ATATATAGGAAAATACGGGTTAACATC
7288532 TGAGCTCCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (27 bp):
ATATATAGGAAAATACGGGTTAACATC
Found at i:7290029 original size:16 final size:16
Alignment explanation
Indices: 7289999--7290045 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
7289989 TTTTAGTAAT
7289999 TTATTTAATTATTTTAA
1 TTATTTAA-TATTTTAA
* *
7290016 TTGTTTAATATTTTAT
1 TTATTTAATATTTTAA
*
7290032 TTAATTAATATTTT
1 TTATTTAATATTTT
7290046 TACAGATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (16 bp):
TTATTTAATATTTTAA
Found at i:7295673 original size:23 final size:23
Alignment explanation
Indices: 7295647--7295714 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
7295637 CAGCTCGTAT
*
7295647 AATTGCACCGAAGTGCCATATTG
1 AATTGCACCGAAGTGCCATATAG
* **
7295670 AATTGCACCGTAGTGCCACGTAG
1 AATTGCACCGAAGTGCCATATAG
*
7295693 AAATGCACCGAAGTGCCATATA
1 AATTGCACCGAAGTGCCATATA
7295715 AGATGTCCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCATATAG
Found at i:7301001 original size:23 final size:23
Alignment explanation
Indices: 7300975--7301039 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
7300965 CAGCTCGTAT
7300975 AATTGCACCGAAGTGCCATGTAG
1 AATTGCACCGAAGTGCCATGTAG
* **
7300998 AATTGCACCGTAGTGCCGCGTAG
1 AATTGCACCGAAGTGCCATGTAG
*
7301021 AAATGCACCGAAGTGCCAT
1 AATTGCACCGAAGTGCCAT
7301040 ATAAGATGTC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCATGTAG
Found at i:7305058 original size:17 final size:17
Alignment explanation
Indices: 7305036--7305091 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
7305026 TATATTTTAT
7305036 TATTATATTTATATAAA
1 TATTATATTTATATAAA
*
7305053 TATTAT-TTTTTATTAAA
1 TATTATATTTATA-TAAA
* *
7305070 -ATAATATTTATATAAT
1 TATTATATTTATATAAA
7305086 TATTAT
1 TATTAT
7305092 TTATTTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTATATTTATATAAA
Found at i:7305059 original size:15 final size:15
Alignment explanation
Indices: 7305041--7305101 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
7305031 TTTATTATTA
7305041 TATTTATATAAATAT
1 TATTTATATAAATAT
* *
7305056 TATTTTTTATTAAAATAA
1 TA-TTTATA-T-AAATAT
*
7305074 TATTTATATAATTAT
1 TATTTATATAAATAT
*
7305089 TATTTATTTAAAT
1 TATTTATATAAAT
7305102 TAGTTAATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
15 17 0.47
16 6 0.17
17 6 0.17
18 7 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTATATAAATAT
Found at i:7305066 original size:30 final size:31
Alignment explanation
Indices: 7305030--7305098 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 31
7305020 TTGTTATATA
*
7305030 TTTTATT-ATTATATTTATATAAATATTATT
1 TTTTATTAATAATATTTATATAAATATTATT
*
7305060 TTTTATTAAAATAATATTTATATAATTATTATT
1 TTTTATT--AATAATATTTATATAAATATTATT
7305093 TATTTA
1 T-TTTA
7305099 AATTAGTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 7 0.21
33 22 0.67
34 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTTATTAATAATATTTATATAAATATTATT
Found at i:7306913 original size:42 final size:42
Alignment explanation
Indices: 7306831--7306913 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
7306821 TGCCATCCCT
* *
7306831 CCAGTTCAGATGCCATCTCCTCAAGGGTATATGCCAAGCCCA
1 CCAGTTCAGATGCCATCTCCGCAAGGGTACATGCCAAGCCCA
* * * *
7306873 CCAGTTTATATGCCATCTCCGC-AGGGTTACATTCCTAGCCC
1 CCAGTTCAGATGCCATCTCCGCAAGGG-TACATGCCAAGCCC
7306914 TCAGGGATAC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (42 bp):
CCAGTTCAGATGCCATCTCCGCAAGGGTACATGCCAAGCCCA
Done.