Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 39
Found at i:7306945 original size:21 final size:22
Alignment explanation
Indices: 7306894--7306956 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 22
7306884 GCCATCTCCG
*
7306894 CAGGGTTACATTCCTAGCCC-T
1 CAGGGTTACATTCCTAGCCCGC
*
7306915 CAGGGATACATTCCTAGCCCGC
1 CAGGGTTACATTCCTAGCCCGC
*
7306937 CA-GGTTACATGCCTAGCCCG
1 CAGGGTTACATTCCTAGCCCG
7306957 TAGGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 35 0.95
22 2 0.05
ACGTcount: A:0.21, C:0.35, G:0.22, T:0.22
Consensus pattern (22 bp):
CAGGGTTACATTCCTAGCCCGC
Found at i:7310323 original size:22 final size:22
Alignment explanation
Indices: 7310298--7310355 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
7310288 ATAAAATGAT
7310298 TAATTA-TATTTATTTAATATAA
1 TAATTAGTA-TTATTTAATATAA
*
7310320 TAATTAGTATTATTTATTATAAAA
1 TAATTAGTATTATTTA--ATATAA
*
7310344 AAATTAGTATTA
1 TAATTAGTATTA
7310356 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 13 0.42
23 2 0.06
24 16 0.52
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (22 bp):
TAATTAGTATTATTTAATATAA
Found at i:7310325 original size:26 final size:28
Alignment explanation
Indices: 7310267--7310325 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 28
7310257 ATATTATATA
* *
7310267 AATTATTTATATTTTAATTTTATAAAAT
1 AATTAATTATATTTTAATTTAATAAAAT
* *
7310295 GATTAATTATA-TTT-ATTTAATATAAT
1 AATTAATTATATTTTAATTTAATAAAAT
7310321 AATTA
1 AATTA
7310326 GTATTATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.54
27 3 0.12
28 9 0.35
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
AATTAATTATATTTTAATTTAATAAAAT
Found at i:7310353 original size:24 final size:26
Alignment explanation
Indices: 7310304--7310355 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
7310294 TGATTAATTA
7310304 TATTTATTTAATATAATAATTAGTAT
1 TATTTATTTAATATAATAATTAGTAT
7310330 TATTTATTATAA-A-AA-AATTAGTAT
1 TATTTATT-TAATATAATAATTAGTAT
7310354 TA
1 TA
7310356 ATTTTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.44
25 2 0.08
26 9 0.36
27 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
TATTTATTTAATATAATAATTAGTAT
Found at i:7310716 original size:11 final size:11
Alignment explanation
Indices: 7310700--7310729 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7310690 ATACATGAGA
7310700 TATTAATAATT
1 TATTAATAATT
7310711 TATTAATAATT
1 TATTAATAATT
7310722 TA-TAATAA
1 TATTAATAA
7310730 CAAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.32
11 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TATTAATAATT
Found at i:7318959 original size:21 final size:21
Alignment explanation
Indices: 7318933--7318980 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7318923 GTTTCCAGAT
7318933 TCGCAACGCGAACATCGACTA
1 TCGCAACGCGAACATCGACTA
* *
7318954 TCGCAACGTGAACTTCGACTA
1 TCGCAACGCGAACATCGACTA
7318975 TCGCAA
1 TCGCAA
7318981 TTCGATTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (21 bp):
TCGCAACGCGAACATCGACTA
Found at i:7319040 original size:42 final size:38
Alignment explanation
Indices: 7318983--7319262 Score: 182
Period size: 42 Copynumber: 6.8 Consensus size: 38
7318973 TATCGCAATT
*
7318983 CGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTG
1 CGATATTCCAAATTCGTTGCGATAGTCCAAGTT--CGTTG
7319023 CGATTTATTCCAAATTCGCGTTGCGATAGTCCAAGTTCGTTG
1 CGA--TATTCCAAATT--CGTTGCGATAGTCCAAGTTCGTTG
* * * * * * *
7319065 AGATAGTCGAAGTTTGCGTTGCTATTTATTCCAAGTTCATTG
1 CGATATTCCAA-ATT-CGTTGCGA--TAGTCCAAGTTCGTTG
* * * *
7319107 CGATAGTCGAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTG
1 CGATATTCCAAATT--CGTTGCGA--TAGTCCAAGTTCGTTG
* * * *
7319149 CGATAGTCGAAGTTCGTTGCGATAGTCGAAGTTCGCGTTG
1 CGATATTCCAAATTCGTTGCGATAGTCCAAGTT--CGTTG
* * *
7319189 CGATTTATTACAAGTTCGTTGCGATAGTCGAAGTTCGCGTTG
1 CGA--TATTCCAAATTCGTTGCGATAGTCCAAGTT--CGTTG
*
7319231 CGATTTATTCCAAATTCGTTGAGATAGTCCAA
1 CGA--TATTCCAAATTCGTTGCGATAGTCCAA
7319263 AATCGCAACG
Statistics
Matches: 206, Mismatches: 22, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
38 9 0.04
40 33 0.16
41 4 0.02
42 141 0.68
44 19 0.09
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (38 bp):
CGATATTCCAAATTCGTTGCGATAGTCCAAGTTCGTTG
Found at i:7319092 original size:63 final size:61
Alignment explanation
Indices: 7318989--7319121 Score: 176
Period size: 63 Copynumber: 2.1 Consensus size: 61
7318979 AATTCGATTT
* * *
7318989 TCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGCGTTGCGATAG
1 TCCAAGTTCGTTGAGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATT--CATTGCGATAG
* * * *
7319052 TCCAAGTTCGTTGAGATAGTCGAAGTTTGCGTTGCTATTTATTCCAAGTTCATTGCGATAG
1 TCCAAGTTCGTTGAGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
*
7319113 TCGAAGTTC
1 TCCAAGTTC
7319122 CCGTTGCGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 18 0.29
63 44 0.71
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (61 bp):
TCCAAGTTCGTTGAGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
Found at i:7319127 original size:63 final size:62
Alignment explanation
Indices: 7318997--7319192 Score: 213
Period size: 61 Copynumber: 3.1 Consensus size: 62
7318987 TTTCCAAATT
* * *
7318997 CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGCGTTGCGATAGTCCAAGTT-
1 CGTTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCCAAGTT--CGTTGCGATAGTCGAAGTTC
* * * *
7319060 CGTTGAGATAGTCGAAGTTTGCGTTGCTATTTATTCCAAGTTCATTGCGATAGTCGAAGTTCC
1 CGTTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTT-C
* * *
7319123 CGTTGCGATTTATTCCAAG-TT-CGTTGCGA--TAGTCGAAGTTCGTTGCGATAGTCGAAGTTC
1 CGTTGCGA--TAGTCCAAGTTTGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTC
7319183 GCGTTGCGAT
1 -CGTTGCGAT
7319193 TTATTACAAG
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
59 1 0.01
60 1 0.01
61 52 0.46
63 51 0.45
64 2 0.02
65 7 0.06
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (62 bp):
CGTTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTC
Found at i:7319187 original size:103 final size:103
Alignment explanation
Indices: 7318988--7319262 Score: 433
Period size: 103 Copynumber: 2.7 Consensus size: 103
7318978 CAATTCGATT
* *
7318988 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGCGTTGCGATAGT
1 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT--CGTTGCGATAGT
* *
7319053 CCAAGTTCGTTGAGATAGTCGAAGTTTGCGTTGCTATTTA
64 CCAAGTTCGTTGAGATAGTCGAAGTTCGCGTTGCGATTTA
* * * *
7319093 TTCCAAGTTCATTGCGATAGTCGAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCG
1 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCC
*
7319158 AAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
66 AAGTTCGTTGAGATAGTCGAAGTTCGCGTTGCGATTTA
* *
7319196 TTACAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGAGATAGTCC
1 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCC
7319261 AA
66 AA
7319263 AATCGCAACG
Statistics
Matches: 155, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
103 109 0.70
105 46 0.30
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (103 bp):
TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCC
AAGTTCGTTGAGATAGTCGAAGTTCGCGTTGCGATTTA
Found at i:7319225 original size:61 final size:61
Alignment explanation
Indices: 7319097--7319234 Score: 231
Period size: 61 Copynumber: 2.2 Consensus size: 61
7319087 TATTTATTCC
* *
7319097 AAGTTCATTGCGATAGTCGAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCG
1 AAGTTCGTTGCGATAGTCGAAGTTCCCGTTGCGATTTATTACAAGTTCGTTGCGATAGTCG
*
7319158 AAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTACAAGTTCGTTGCGATAGTCG
1 AAGTTCGTTGCGATAGTCGAAGTTCCCGTTGCGATTTATTACAAGTTCGTTGCGATAGTCG
7319219 AAGTTCGCGTTGCGAT
1 AAGTT--CGTTGCGAT
7319235 TTATTCCAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
61 63 0.88
63 9 0.12
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (61 bp):
AAGTTCGTTGCGATAGTCGAAGTTCCCGTTGCGATTTATTACAAGTTCGTTGCGATAGTCG
Found at i:7319776 original size:85 final size:85
Alignment explanation
Indices: 7319675--7319845 Score: 333
Period size: 85 Copynumber: 2.0 Consensus size: 85
7319665 TCGCGAGTGA
7319675 TGCAATTTTTTTTAAATGTTTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTT
1 TGCAATTTTTTTTAAATGTTTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTT
7319740 AATTATGACATATTTAATCG
66 AATTATGACATATTTAATCG
*
7319760 TGCAATTTTTTTTAAATGTTTTGCTTAAAATTGTAATAATCACGATTGATTGTAGATTGACTTTT
1 TGCAATTTTTTTTAAATGTTTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTT
7319825 AATTATGACATATTTAATCG
66 AATTATGACATATTTAATCG
7319845 T
1 T
7319846 ATAATACTAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.47
Consensus pattern (85 bp):
TGCAATTTTTTTTAAATGTTTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTT
AATTATGACATATTTAATCG
Found at i:7319869 original size:85 final size:85
Alignment explanation
Indices: 7319688--7319869 Score: 249
Period size: 85 Copynumber: 2.1 Consensus size: 85
7319678 AATTTTTTTT
*
7319688 AAATGTTTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTTAATTATGACATAT
1 AAATGTGTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTTAATTATGACATAT
* * ** **
7319753 TTAATCGTGCAATTTTTTTT
66 TTAATCGTACAATCTAATGC
* *
7319773 AAATGTTTTGCTTAAAATTGTAATAATCACGATTGATTGTAGATTGACTTTTAATTATGACATAT
1 AAATGTGTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTTAATTATGACATAT
*
7319838 TTAATCGTATAATACTAATGC
66 TTAATCGTACAAT-CTAATGC
*
7319859 AATTG-GTTGCT
1 AAATGTGTTGCT
7319870 GATTCAGTTG
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 80 0.93
86 6 0.07
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (85 bp):
AAATGTGTTGCTTAAAATTGCAATAATCACGATTGATTGTAGATTGACTTTTAATTATGACATAT
TTAATCGTACAATCTAATGC
Found at i:7320218 original size:21 final size:21
Alignment explanation
Indices: 7320194--7320307 Score: 119
Period size: 21 Copynumber: 5.4 Consensus size: 21
7320184 ATTTTGGACT
*
7320194 ATCGCAACGAACTTTGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
7320215 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
7320236 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
7320257 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
7320278 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
7320299 ATCGCAACG
1 ATCGCAACG
7320308 CGAACTTCGA
Statistics
Matches: 78, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
19 20 0.26
21 37 0.47
23 21 0.27
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:7320249 original size:42 final size:42
Alignment explanation
Indices: 7320190--7320367 Score: 243
Period size: 42 Copynumber: 4.3 Consensus size: 42
7320180 TGCGATTTTG
7320190 GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
* *
7320232 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
7320274 GACTATCGCAACGAA-TTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTT-GAATAAATCGCAACGCGAACTTC
*** * ** * *
7320316 GACTATCGCAAATCAGTTTCCA-GATTCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
7320357 GACTATCGCAA
1 GACTATCGCAA
7320368 TGCGAATATG
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
41 30 0.24
42 90 0.73
43 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
Found at i:7320323 original size:21 final size:21
Alignment explanation
Indices: 7320190--7320373 Score: 116
Period size: 21 Copynumber: 8.8 Consensus size: 21
7320180 TGCGATTTTG
*
7320190 GACTATCGCAA--CGAACTTT
1 GACTATCGCAACGCGAACTTC
*
7320209 GAATAAATCGCAACGCGAACTTC
1 GACT--ATCGCAACGCGAACTTC
*
7320232 GACTATCGCAA--CGAACTTG
1 GACTATCGCAACGCGAACTTC
* *
7320251 GAATAAATCGCAACGCGAACTTG
1 GACT--ATCGCAACGCGAACTTC
* *
7320274 GACTATCGCAA--CGAATTTG
1 GACTATCGCAACGCGAACTTC
*
7320293 GAATAAATCGCAACGCGAACTTC
1 GACT--ATCGCAACGCGAACTTC
** **
7320316 GACTATCGCAAATC-AGTTTCC
1 GACTATCGCAACGCGAACTT-C
7320337 AGA-T-TCGCAACGCGAACTTC
1 -GACTATCGCAACGCGAACTTC
*
7320357 GACTATCGCAATGCGAA
1 GACTATCGCAACGCGAA
7320374 TATGTAAATC
Statistics
Matches: 128, Mismatches: 20, Indels: 32
0.71 0.11 0.18
Matches are distributed among these distances:
19 25 0.20
20 12 0.09
21 59 0.46
22 2 0.02
23 30 0.23
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (21 bp):
GACTATCGCAACGCGAACTTC
Found at i:7320386 original size:41 final size:41
Alignment explanation
Indices: 7320190--7320392 Score: 225
Period size: 42 Copynumber: 4.9 Consensus size: 41
7320180 TGCGATTTTG
*
7320190 GACTATCGCAACGAACTTTGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAA-TTTGGATAAATCGCAACGCGAACTTC
* *
7320232 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGG-ATAAATCGCAACGCGAACTTC
7320274 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGG-ATAAATCGCAACGCGAACTTC
* ** * *
7320316 GACTATCGCAAATC-AGTTTCCA-GATTCGCAACGCGAACTTC
1 GACTATCGC-AA-CGAATTTGGATAAATCGCAACGCGAACTTC
* *
7320357 GACTATCGCAATGCGAATAT-G-TAAATCGCAATGCGA
1 GACTATCGCAA--CGAATTTGGATAAATCGCAACGCGA
7320393 TAGTCGAAGT
Statistics
Matches: 138, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
40 2 0.01
41 41 0.30
42 88 0.64
43 6 0.04
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (41 bp):
GACTATCGCAACGAATTTGGATAAATCGCAACGCGAACTTC
Found at i:7330213 original size:14 final size:15
Alignment explanation
Indices: 7330194--7330222 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7330184 TCAAGCATCT
7330194 AACAATCCA-AAACA
1 AACAATCCAGAAACA
7330208 AACAATCCAGAAACA
1 AACAATCCAGAAACA
7330223 TCAAAACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.28, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Found at i:7332177 original size:23 final size:22
Alignment explanation
Indices: 7332146--7332221 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
7332136 GACCTTGTGT
7332146 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTCAAGG-GTGC
* * * *
7332169 ATCGGTGCACCTTC-ATGGTGT
1 ATCGATGCACATTCAAGGGTGC
* *
7332190 ATCAATGCACATTCAAGGATGC
1 ATCGATGCACATTCAAGGGTGC
7332212 ATCGATGCAC
1 ATCGATGCAC
7332222 TGTTAGGTGT
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
21 14 0.34
22 15 0.37
23 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (22 bp):
ATCGATGCACATTCAAGGGTGC
Found at i:7332190 original size:44 final size:42
Alignment explanation
Indices: 7332142--7332240 Score: 128
Period size: 44 Copynumber: 2.3 Consensus size: 42
7332132 GCATGACCTT
* *
7332142 GTGTATCGATGCACATTCAAGGCGTGCATCGGTGCACCT-TCATG
1 GTGTATCGATGCACATTCAAGG-ATGCATCGATGCA-CTGTCA-G
* *
7332186 GTGTATCAATGCACATTCAAGGATGCATCGATGCACTGTTAG
1 GTGTATCGATGCACATTCAAGGATGCATCGATGCACTGTCAG
7332228 GTGTATCGATGCA
1 GTGTATCGATGCA
7332241 TTAAGCACAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 15 0.31
43 13 0.27
44 21 0.43
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTATCGATGCACATTCAAGGATGCATCGATGCACTGTCAG
Found at i:7339000 original size:131 final size:131
Alignment explanation
Indices: 7338758--7339118 Score: 499
Period size: 131 Copynumber: 2.8 Consensus size: 131
7338748 ATAATTTTAA
* *
7338758 GAGAGAAAACGATAATATCTAATTATTTCCAATCGATAATAAACGACCTTTCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTTTCATGCCTTAAAGCA
* * * * * *
7338823 TTAATTTATTA-TTTCAATCGAAATAAAGAGATGTCACTATTTCGTCTTAAAATTCAATATTGAT
66 TTCATTTATTACTCT-AATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGAT
7338887 TC
130 TC
* * * * * *
7338889 GAGTGAAAACAATAATATCTAATGATTTCCAATCGAGAATAGATGACATTTCATGTCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTTTCATGCCTTAAAGCA
*
7338954 TTCATTTATCACTCTAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGATT
66 TTCATTTATTACTCTAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGATT
7339019 C
131 C
* * *
7339020 GAGAGAAAATGGTAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTTTCATGCCTTAAAGCA
** * * *
7339085 AGCATTTATTACTCCAATCAAAATGAAAAGATAT
66 TTCATTTATTACTCTAATCGAAATGAAGAGATAT
7339119 TATTGTTTTC
Statistics
Matches: 199, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
131 197 0.99
132 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (131 bp):
GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTTTCATGCCTTAAAGCA
TTCATTTATTACTCTAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGATT
C
Found at i:7341747 original size:60 final size:59
Alignment explanation
Indices: 7341683--7341798 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 59
7341673 ACTACGATTA
* * *
7341683 TCATTTTAAATTAGTCCTCAAACTTT-TGA-ACATTTCAATTTCATCTCCAAACTATATCCT
1 TCATTCTAAATTAGTCC-CAAAATTTCT-ATACATTCCAATTTCATC-CCAAACTATATCCT
* *
7341743 TCATTCTAAATTGGTCCCAAAATTTCTATACATTCCAATTTCATCCCAATCTATAT
1 TCATTCTAAATTAGTCCCAAAATTTCTATACATTCCAATTTCATCCCAAACTATAT
7341799 GCATATACTA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 18 0.37
60 31 0.63
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (59 bp):
TCATTCTAAATTAGTCCCAAAATTTCTATACATTCCAATTTCATCCCAAACTATATCCT
Found at i:7342023 original size:60 final size:60
Alignment explanation
Indices: 7341954--7342084 Score: 165
Period size: 60 Copynumber: 2.2 Consensus size: 60
7341944 AAAACAATGG
* * * *
7341954 GGACCAATTTAGAAAGAGGGTCATAGTTT-AGGTATAAAATTTGAATGTTCAAAAATTTAA
1 GGACAAATTTAGAAAGAGAGTCATAGTTTAAGGT-TAAAATTAGAATCTTCAAAAATTTAA
* * * * *
7342014 GGACTAATTTAGAATGAGAGTCTTAGTTTAAGGTTCAAATTAGAATCTTCAAAAGTTTAA
1 GGACAAATTTAGAAAGAGAGTCATAGTTTAAGGTTAAAATTAGAATCTTCAAAAATTTAA
7342074 GGACAAATTTA
1 GGACAAATTTA
7342085 AAATAAGGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 57 0.93
61 4 0.07
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (60 bp):
GGACAAATTTAGAAAGAGAGTCATAGTTTAAGGTTAAAATTAGAATCTTCAAAAATTTAA
Found at i:7342695 original size:60 final size:60
Alignment explanation
Indices: 7342578--7342697 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 60
7342568 ACATTACATG
* * * **
7342578 TCCTCAAACTATAACTTTCATTTTAAATTGATCATTACACTTTTGAATGTTTCAATTTCA
1 TCCTCAAACTATAACTTTCACTCTAAATTGATCATTAAACTTTTGAATCATTCAATTTCA
** * *
7342638 TCCTCAAACTATGTCTTTCACTCTAAATTGGTCTTTAAACTTTTG-ATCATTCTAATTTCA
1 TCCTCAAACTATAACTTTCACTCTAAATTGATCATTAAACTTTTGAATCATTC-AATTTCA
7342698 ACCCTAAATT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 5 0.10
60 45 0.90
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.45
Consensus pattern (60 bp):
TCCTCAAACTATAACTTTCACTCTAAATTGATCATTAAACTTTTGAATCATTCAATTTCA
Found at i:7343068 original size:59 final size:58
Alignment explanation
Indices: 7342892--7343073 Score: 174
Period size: 60 Copynumber: 3.1 Consensus size: 58
7342882 ATACGTATAG
* * *
7342892 TTTGGGATGAAATTAGAATGTTTGAGAAGTTTGGGATCAATTTAGAATGAAGGTCATAGT
1 TTTGGGATGAAATTAGAATATTT-AAAAGTTTGGGATCAATTTAGAATG-AGGTCATAAT
* * *
7342952 TTAGGGATGAAATT-GAA-ATGTTCAAAAGTATGAGGA-CTAATTTAGAATGATAGTCATAAT
1 TTTGGGATGAAATTAGAATAT-TT-AAAAGTTTG-GGATC-AATTTAGAATGA-GGTCATAAT
* * *
7343012 TTTGGGATGACATTAGAATATTT-AAAGTTTAGGGATCAATTTAAAATGAGGTTCATACT
1 TTTGGGATGAAATTAGAATATTTAAAAGTTT-GGGATCAATTTAGAATGAGG-TCATAAT
7343071 TTT
1 TTT
7343074 AGGACATGAG
Statistics
Matches: 100, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
58 2 0.02
59 43 0.43
60 48 0.48
61 5 0.05
62 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (58 bp):
TTTGGGATGAAATTAGAATATTTAAAAGTTTGGGATCAATTTAGAATGAGGTCATAAT
Found at i:7344958 original size:132 final size:127
Alignment explanation
Indices: 7344743--7344995 Score: 289
Period size: 131 Copynumber: 2.0 Consensus size: 127
7344733 AAATTCATGT
* * * **
7344743 TCCTTTTGAATATTACAAATTAAAAGATATTTTTAATTTGAATATTAGTAGGATAATTATTCTTT
1 TCCTTTTGAATATTACAAATTAAAAAATATTTTTAATTTAAATAGTAAAAGGATAATTATTCTTT
* *
7344808 GAATATGTTAAATTAAAAGGTATT-TGTTACCTATTTAACTTTGAATATTAA-AGATAATTATA
66 GAATATGTTAAATTAAAAGATATTATGTTA--TATTTAAATTTGAATATTAAGAGATAATTATA
* * *
7344870 TCCTTTTGAATATTTCAAATTAAAATAATATTTATTTAAGTTTAAATAGTAAAAGG-TGATTTTA
1 TCCTTTTGAATATTACAAATTAAAA-AATA-TT-TTTAA-TTTAAATAGTAAAAGGATAATTAT-
* *
7344934 TCTTTTGAATAT-TTCAAATTAAAAGATATTATTTTATGTTTAAATTTGAATATTAAGAGATA
61 TC-TTTGAATATGTT-AAATTAAAAGATATTATGTTATATTTAAATTTGAATATTAAGAGATA
7344996 TCTAGTTGGA
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
127 24 0.23
128 3 0.03
129 2 0.02
130 10 0.10
131 34 0.32
132 28 0.27
133 4 0.04
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (127 bp):
TCCTTTTGAATATTACAAATTAAAAAATATTTTTAATTTAAATAGTAAAAGGATAATTATTCTTT
GAATATGTTAAATTAAAAGATATTATGTTATATTTAAATTTGAATATTAAGAGATAATTATA
Found at i:7351435 original size:2 final size:2
Alignment explanation
Indices: 7351430--7351468 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7351420 CATATATTGC
*
7351430 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7351469 CAGGTTATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7355582 original size:2 final size:2
Alignment explanation
Indices: 7355575--7355604 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7355565 AATTACGATC
7355575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7355605 TTGATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7356779 original size:30 final size:31
Alignment explanation
Indices: 7356729--7356788 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
7356719 TGTTCAACTC
*
7356729 GTGCTCTTTAAAAAAAATTGTTGCTCGACTT
1 GTGCTCTTTAAAAAAAATTGTTACTCGACTT
*
7356760 GTGCTCTTT-AAATAAATTGTTACTCGACT
1 GTGCTCTTTAAAAAAAATTGTTACTCGACT
7356789 CAACTCGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (31 bp):
GTGCTCTTTAAAAAAAATTGTTACTCGACTT
Found at i:7359089 original size:26 final size:26
Alignment explanation
Indices: 7359059--7359111 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7359049 TGACCCAAGA
7359059 ATATCACCAAGCTC-ATGAATGAATGG
1 ATATCACCAAGCTCTAT-AATGAATGG
** *
7359085 ATATCTTCGAGCTCTATAATGAATGG
1 ATATCACCAAGCTCTATAATGAATGG
7359111 A
1 A
7359112 ATAAAACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (26 bp):
ATATCACCAAGCTCTATAATGAATGG
Found at i:7360116 original size:24 final size:24
Alignment explanation
Indices: 7360089--7360201 Score: 131
Period size: 24 Copynumber: 4.8 Consensus size: 24
7360079 AATTTTGTTA
* *
7360089 TGATACCTAACCTGAATTCTGATC
1 TGATACATGACCTGAATTCTGATC
* *
7360113 TGATAC-TGACATGGATTCTGATC
1 TGATACATGACCTGAATTCTGATC
* *
7360136 TGATATATGACCTGGATTCTGATC
1 TGATACATGACCTGAATTCTGATC
*
7360160 TGATACATGACCTGGAA-TCTGATA
1 TGATACATGACCT-GAATTCTGATC
*
7360184 TGATACTTGACCTGAATT
1 TGATACATGACCTGAATT
7360202 ATGTTTTGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
23 22 0.29
24 53 0.69
25 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (24 bp):
TGATACATGACCTGAATTCTGATC
Found at i:7361472 original size:7 final size:7
Alignment explanation
Indices: 7361462--7361494 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
7361452 ACAAAAAAAT
7361462 ATATAAA
1 ATATAAA
7361469 ATATTAAA
1 ATA-TAAA
7361477 ATATAAA
1 ATATAAA
7361484 ATATAAA
1 ATATAAA
7361491 ATAT
1 ATAT
7361495 TTTTGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
ATATAAA
Found at i:7361482 original size:15 final size:14
Alignment explanation
Indices: 7361462--7361494 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
7361452 ACAAAAAAAT
7361462 ATATAAAATATTAAA
1 ATATAAAATA-TAAA
7361477 ATATAAAATATAAA
1 ATATAAAATATAAA
7361491 ATAT
1 ATAT
7361495 TTTTGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATAAAATATAAA
Found at i:7362631 original size:21 final size:22
Alignment explanation
Indices: 7362607--7362647 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7362597 AAAAAAAATG
*
7362607 TACCA-AAAGATAGAGAAAACA
1 TACCATAAAGACAGAGAAAACA
*
7362628 TACCATAAAGACATAGAAAA
1 TACCATAAAGACAGAGAAAA
7362648 ATGTGTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.61, C:0.15, G:0.12, T:0.12
Consensus pattern (22 bp):
TACCATAAAGACAGAGAAAACA
Found at i:7365965 original size:26 final size:24
Alignment explanation
Indices: 7365935--7365992 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 24
7365925 GGAGATCCAC
* *
7365935 ATATTTTTGTATAACTACTTTTATT
1 ATATTTTAGTATAACTA-TTTGATT
7365960 ACTATTTTAGTATAACTATTTGATT
1 A-TATTTTAGTATAACTATTTGATT
7365985 ATATTTTA
1 ATATTTTA
7365993 TGGGCTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 7 0.23
25 8 0.27
26 15 0.50
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (24 bp):
ATATTTTAGTATAACTATTTGATT
Found at i:7365979 original size:14 final size:14
Alignment explanation
Indices: 7365936--7365980 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7365926 GAGATCCACA
*
7365936 TATTTTTGTATAAC
1 TATTTTAGTATAAC
7365950 TACTTTTA-T-T-AC
1 TA-TTTTAGTATAAC
7365962 TATTTTAGTATAAC
1 TATTTTAGTATAAC
7365976 TATTT
1 TATTT
7365981 GATTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
11 5 0.19
12 5 0.19
13 2 0.08
14 10 0.38
15 4 0.15
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (14 bp):
TATTTTAGTATAAC
Found at i:7367390 original size:205 final size:204
Alignment explanation
Indices: 7367025--7367433 Score: 800
Period size: 205 Copynumber: 2.0 Consensus size: 204
7367015 TCAATACGGA
7367025 TACCCAAAGGGATTAAGACTCTTAGCACCAACCCAAATGAACCCAAGAGAATTCAGGTAACAAAA
1 TACCCAAAGGGATTAAGACTCTTAGCACCAACCCAAATGAACCCAAGAGAATTCAGGTAACAAAA
7367090 AAATAAAGTTTGATTTTTTACTAGTAGATGGAGGAGCAATGCTTCAATGCAAACACATTCAAGTG
66 AAATAAAGTTTGATTTTTTACTAGTAGATGGAGGAGCAATGCTTCAATGCAAACACATTCAAGTG
7367155 ATCATTATCTTGATACTTGATCATGAATGCTTAAGAAATCACTAAAGATAAATATCAATTCATGG
131 ATCATTATCTTGATACTTGATCATGAATGCTTAAGAAATCACTAAAGATAAATATCAATTCATGG
7367220 AGTTAAAGC
196 AGTTAAAGC
7367229 TACCCAAAGGGATTAAGACTCTTAGCACCAACCCAAATGAACCCAAGAGAATTCAGGTAACAAAA
1 TACCCAAAGGGATTAAGACTCTTAGCACCAACCCAAATGAACCCAAGAGAATTCAGGTAACAAAA
*
7367294 ATATAAAGTTTGATTTTTTTACTAGTAGATGGAGGAGCAATGCTTCAATGCAAACACATTCAAGT
66 AAATAAAGTTTGA-TTTTTTACTAGTAGATGGAGGAGCAATGCTTCAATGCAAACACATTCAAGT
7367359 GATCATTATCTTGATACTTGATCATGAATGCTTAAGAAATCACTAAAGATAAATATCAATTCATG
130 GATCATTATCTTGATACTTGATCATGAATGCTTAAGAAATCACTAAAGATAAATATCAATTCATG
7367424 GAGTTAAAGC
195 GAGTTAAAGC
7367434 CTATAAGTGA
Statistics
Matches: 203, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
204 77 0.38
205 126 0.62
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (204 bp):
TACCCAAAGGGATTAAGACTCTTAGCACCAACCCAAATGAACCCAAGAGAATTCAGGTAACAAAA
AAATAAAGTTTGATTTTTTACTAGTAGATGGAGGAGCAATGCTTCAATGCAAACACATTCAAGTG
ATCATTATCTTGATACTTGATCATGAATGCTTAAGAAATCACTAAAGATAAATATCAATTCATGG
AGTTAAAGC
Found at i:7369855 original size:51 final size:50
Alignment explanation
Indices: 7369793--7369898 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 50
7369783 TAAAAAAAAT
* *
7369793 TGACTAAAATGCAAGAAAATAAAAGT-TAGTAACTAAATCAGAAA-TAAACAG
1 TGACCAAAATGCAA-AAAATAAAA-TACAGTAACTAAATCAGAAACT-AACAG
* *
7369844 TGACCAAAATGCAAAAATTAAAATAACAGTAGCTAAATCAGAAACTAACAG
1 TGACCAAAATGCAAAAAATAAAAT-ACAGTAACTAAATCAGAAACTAACAG
7369895 TGAC
1 TGAC
7369899 TAAATTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
49 1 0.02
50 8 0.17
51 38 0.79
52 1 0.02
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (50 bp):
TGACCAAAATGCAAAAAATAAAATACAGTAACTAAATCAGAAACTAACAG
Found at i:7370946 original size:18 final size:18
Alignment explanation
Indices: 7370925--7370962 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7370915 CTGTTAACTT
7370925 TTGAATTCCTGTCAAATA
1 TTGAATTCCTGTCAAATA
7370943 TTGAATTCCTGTCAAATA
1 TTGAATTCCTGTCAAATA
7370961 TT
1 TT
7370963 CAACATCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (18 bp):
TTGAATTCCTGTCAAATA
Found at i:7371164 original size:36 final size:37
Alignment explanation
Indices: 7371070--7371172 Score: 109
Period size: 39 Copynumber: 2.8 Consensus size: 37
7371060 GACGAAGTTG
* * *
7371070 GTTTTAAGAAAAACCATCTCGAGTGAGATAAAATTTCTT
1 GTTTTAAGAAAAACAATCTCAAGTGAGACAAAA--TCTT
* * * *
7371109 GTTTCAAGAGAAACTATCTCCAGTGAGACAAAA-CTT
1 GTTTTAAGAAAAACAATCTCAAGTGAGACAAAATCTT
*
7371145 GTTTTGAGAAAAACAATCTCAAGTGAGA
1 GTTTTAAGAAAAACAATCTCAAGTGAGA
7371173 TAAATTTTGT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
36 26 0.48
39 28 0.52
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (37 bp):
GTTTTAAGAAAAACAATCTCAAGTGAGACAAAATCTT
Found at i:7371164 original size:75 final size:76
Alignment explanation
Indices: 7371014--7371187 Score: 214
Period size: 75 Copynumber: 2.3 Consensus size: 76
7371004 AAGCTCTCTT
* * * * *
7371014 AAGTGAGATAAAATATCTTGTTTCAAGGGAAAACTGTCTCAAGCGAGACGAAGTTGGTTTTAAGA
1 AAGTGAGATAAAATTTCTTGTTTCAAGAGAAAACTATCTCAAGCGAGACAAACTTGGTTTTAAGA
*
7371079 AAAACCATCTC
66 AAAACAATCTC
* * * *
7371090 GAGTGAGATAAAATTTCTTGTTTCAAGAG-AAACTATCTCCAGTGAGACAAAACTT-GTTTTGAG
1 AAGTGAGATAAAATTTCTTGTTTCAAGAGAAAACTATCTCAAGCGAGAC-AAACTTGGTTTTAAG
7371153 AAAAACAATCTC
65 AAAAACAATCTC
7371165 AAGTGAGAT-AAA-TT-TTGTTTCAA
1 AAGTGAGATAAAATTTCTTGTTTCAA
7371188 TGGAAACATA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
72 9 0.10
73 2 0.02
74 3 0.03
75 42 0.49
76 30 0.35
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (76 bp):
AAGTGAGATAAAATTTCTTGTTTCAAGAGAAAACTATCTCAAGCGAGACAAACTTGGTTTTAAGA
AAAACAATCTC
Found at i:7371195 original size:36 final size:36
Alignment explanation
Indices: 7371014--7371639 Score: 140
Period size: 36 Copynumber: 17.8 Consensus size: 36
7371004 AAGCTCTCTT
* **
7371014 AAGTGAGATAAAATATCTTGTTTCAAGGGAAAACTGTCTC
1 AAGTGAGAT-AAAT-T-TTGTTTCAAGAG-AAACAATCTC
* ** * * * * *
7371054 AAGCGAGACGAAGTTGGTTTTAAGAAAAACCATCTC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
* *
7371090 GAGTGAGATAAAATTTCTTGTTTCAAGAGAAACTATCTC
1 AAGTGAGAT-AAA-TT-TTGTTTCAAGAGAAACAATCTC
* * ** ** *
7371129 CAGTGAGACAAAACTTGTTTTGAGAAAAACAATCTC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
7371165 AAGTGAGATAAATTTTGTTTCAATG-GAAACATAT-T-
1 AAGTGAGATAAATTTTGTTTCAA-GAGAAACA-ATCTC
* **
7371200 AA--AAGAT---TTTGTGTTTCAAGAGAAACTGTCTC
1 AAGTGAGATAAATTT-TGTTTCAAGAGAAACAATCTC
* * * * *
7371232 AAGGGAGACAAAATTTTGTTTCAAGGGAAATAATTTC
1 AAGTGAGA-TAAATTTTGTTTCAAGAGAAACAATCTC
* ** **
7371269 AAAT--G-T-TTTTTTGTTTCAAGAGAAACTGTCTC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
* * *
7371301 AAGGGAGACCAAATTTTTTTTCAA-AGGAAACAAAT-TC
1 AAGTGAGA-TAAATTTTGTTTCAAGA-GAAAC-AATCTC
* * **
7371338 AA---AGAT---TTGTCTTTCAAGAGAAACTGTCTC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
* *
7371368 AAG-GAAGACCAAATTTTGTTTCAAGGGAAACAAAT-TC
1 AAGTG-AGA-TAAATTTTGTTTCAAGAGAAAC-AATCTC
**
7371405 AA---AGAT---TTTGTGTTTCAAGAGAAACTGTCTC
1 AAGTGAGATAAATTT-TGTTTCAAGAGAAACAATCTC
* * **
7371436 AAGAGAGACAAAATTTTGTTTCAAGAGAAACTGTCTC
1 AAGTGAGA-TAAATTTTGTTTCAAGAGAAACAATCTC
* * * * *
7371473 AAGAGATACAAATTTTGTTTCAGGGGAAACAGAT-TC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACA-ATCTC
* **
7371509 AA---AG----ATTTTGTTTCAAGGGAAACTGTCTC
1 AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
* ** * * ** *
7371538 AAGAT-AGACAAAACTTGTTTTAAGATAAACTGTCTT
1 AAG-TGAGATAAATTTTGTTTCAAGAGAAACAATCTC
* * * * *
7371574 AAGAGAGACAAAATTTGTTTTAAGGAGAAAATAATCTC
1 AAGTGAGATAAATTTTGTTTCAA-GAG-AAACAATCTC
* *
7371612 AAGTGAGATTAATTTTGTTTTAAG-GAAA
1 AAGTGAGATAAATTTTGTTTCAAGAGAAA
7371640 TTTGTCTCCA
Statistics
Matches: 428, Mismatches: 105, Indels: 111
0.66 0.16 0.17
Matches are distributed among these distances:
28 1 0.00
29 23 0.05
30 27 0.06
31 33 0.08
32 25 0.06
33 8 0.02
34 13 0.03
35 6 0.01
36 119 0.28
37 101 0.24
38 38 0.09
39 27 0.06
40 7 0.02
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (36 bp):
AAGTGAGATAAATTTTGTTTCAAGAGAAACAATCTC
Found at i:7371398 original size:37 final size:36
Alignment explanation
Indices: 7371349--7371603 Score: 150
Period size: 36 Copynumber: 7.3 Consensus size: 36
7371339 AAGATTTGTC
7371349 TTTCAAGAGAAACTGTCTCAAGGAAGACCAAATTTTG
1 TTTCAAGAGAAACTGTCTCAA-GAAGACCAAATTTTG
* ** *
7371386 TTTCAAGGGAAACAAAT-TC-A-AAG----ATTTTGTG
1 TTTCAAGAGAAAC-TGTCTCAAGAAGACCAAATTT-TG
*
7371417 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
1 TTTCAAGAGAAACTGTCTCAAGA-AGACCAAATTTTG
*
7371454 TTTCAAGAGAAACTGTCTCAAG-AGATACAAATTTTG
1 TTTCAAGAGAAACTGTCTCAAGAAGA-CCAAATTTTG
* * *
7371490 TTTCAGGGGAAACAGAT-TC-A-AAG-----ATTTTG
1 TTTCAAGAGAAACTG-TCTCAAGAAGACCAAATTTTG
* **
7371519 TTTCAAGGGAAACTGTCTCAAGATAGA-CAAAACTTG
1 TTTCAAGAGAAACTGTCTCAAGA-AGACCAAATTTTG
* * * *
7371555 TTTTAAGATAAACTGTCTTAAGAGAGA-CAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGA-AGACCAAATTTTG
*
7371591 TTTTAAGGAGAAA
1 TTTCAA-GAGAAA
7371604 ATAATCTCAA
Statistics
Matches: 172, Mismatches: 24, Indels: 44
0.72 0.10 0.18
Matches are distributed among these distances:
28 1 0.01
29 21 0.12
30 6 0.03
31 17 0.10
32 3 0.02
33 1 0.01
34 5 0.03
35 6 0.03
36 63 0.37
37 44 0.26
38 5 0.03
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.29
Consensus pattern (36 bp):
TTTCAAGAGAAACTGTCTCAAGAAGACCAAATTTTG
Found at i:7371460 original size:68 final size:68
Alignment explanation
Indices: 7371161--7371466 Score: 436
Period size: 68 Copynumber: 4.5 Consensus size: 68
7371151 AGAAAAACAA
* * * * *
7371161 TCTCAAGTGAGA-TAAATTTTGTTTCAATGGAAACATATTAAAAGATTTTGTGTTTCAAGAGAAA
1 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACAAATTCAAAGATTTTGTGTTTCAAGAGAAA
7371225 CTG
66 CTG
* * * *
7371228 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAATAATTTCAAATGTTTTTTTGTTTCAAGAGAA
1 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACAAATTCAAA-GATTTTGTGTTTCAAGAGAA
7371293 ACTG
65 ACTG
* * * *
7371297 TCTCAAGGGAGACCAAATTTTTTTTCAAAGGAAACAAATTCAAAGA-TTTGTCTTTCAAGAGAAA
1 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACAAATTCAAAGATTTTGTGTTTCAAGAGAAA
7371361 CTG
66 CTG
* *
7371364 TCTCAAGGAAGACCAAATTTTGTTTCAAGGGAAACAAATTCAAAGATTTTGTGTTTCAAGAGAAA
1 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACAAATTCAAAGATTTTGTGTTTCAAGAGAAA
7371429 CTG
66 CTG
* *
7371432 TCTCAAGAGAGACAAAATTTTGTTTCAAGAGAAAC
1 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
7371467 TGTCTCAAGA
Statistics
Matches: 211, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
67 73 0.35
68 77 0.36
69 61 0.29
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (68 bp):
TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACAAATTCAAAGATTTTGTGTTTCAAGAGAAA
CTG
Found at i:7371665 original size:36 final size:36
Alignment explanation
Indices: 7371515--7371666 Score: 128
Period size: 36 Copynumber: 4.2 Consensus size: 36
7371505 ATTCAAAGAT
* * *
7371515 TTTGTTTCAAGGGAAACTGTCTCAAGAT-AGACAAAA
1 TTTGTTTTAAGGAAAATTGTCTCAAG-TGAGACAAAA
* * * *
7371551 CTTGTTTTAA-GATAAACTGTCTTAAGAGAGACAAAA
1 TTTGTTTTAAGGA-AAATTGTCTCAAGTGAGACAAAA
** ** *
7371587 TTTGTTTTAAGGAGAAAATAATCTCAAGTGAGATTAAT
1 TTTGTTTTAA-G-GAAAATTGTCTCAAGTGAGACAAAA
* *
7371625 TTTGTTTTAAGGAAATTTGTCTCCAGTGAGACAAAA
1 TTTGTTTTAAGGAAAATTGTCTCAAGTGAGACAAAA
7371661 TTTGTT
1 TTTGTT
7371667 CTTAGAAAAA
Statistics
Matches: 90, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
35 1 0.01
36 61 0.68
37 1 0.01
38 25 0.28
39 2 0.02
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (36 bp):
TTTGTTTTAAGGAAAATTGTCTCAAGTGAGACAAAA
Found at i:7372118 original size:42 final size:42
Alignment explanation
Indices: 7372039--7372139 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
7372029 GGTCTTATGG
* * *
7372039 ATGGTCCGAATGACTTA-TCATCTTGCTCGAAAGACTTA-TAA
1 ATGGCCCGAATGACTTACGCATCATGCTCGAAAGACTTACT-A
*
7372080 ATGGCCCGAA-GAACTTACGCATCATGCTCGAAAGACTTACTG
1 ATGGCCCGAATG-ACTTACGCATCATGCTCGAAAGACTTACTA
7372122 ATGGCCCGAATGACTTAC
1 ATGGCCCGAATGACTTAC
7372140 TCATTAAGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
40 1 0.02
41 14 0.27
42 35 0.67
43 2 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGGCCCGAATGACTTACGCATCATGCTCGAAAGACTTACTA
Found at i:7372347 original size:98 final size:98
Alignment explanation
Indices: 7372140--7372958 Score: 1284
Period size: 98 Copynumber: 8.4 Consensus size: 98
7372130 AATGACTTAC
* * * *
7372140 TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTTTCAAGGAACCCCT-AAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
7372204 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* *
7372237 TCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAATGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* *
7372302 CTTAGCTTCCTTTAAAAAATTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* *
7372335 TCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAATGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
*
7372400 CTTAACTTCCTTTTAAAAACTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* *
7372433 TCATCAAGAAACCCCTGAAAATCAGGCTTACTTTCTTAGTTGTCAATGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
*
7372498 CTTAACTTCCTTTTAAAAACTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* * *
7372531 TCATCAAGAAACCCATAAAAATCATGCTTAGTTTCTTAGTTGTCAAGGAACCCCT-AAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* *
7372595 CTTAGTTTCCTTTTAAAAACTCATTGAAAATCA
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* * * *
7372628 TCATCAAGAAACCCCTGAAAATCATGTTTAGTTTCTTAGTTGTCAAGGAACCCATATAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* * *
7372693 CTTAGATTCCTTTTAAAAAATCATTGAAAATCA
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
7372726 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* *
7372791 CTTAGCTTCCTTTAAAAAATTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* * * *
7372824 TCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTAGTAGTCAAGGAACCCAT-AAAATTAGC
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* *
7372888 CTTAGCTTCCTTTCAAAACCTCATTGAAAATCT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
* * *
7372921 TCATCAAGAAAACCCTAAAAATTAGGCTTAGTTTCTTA
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTA
7372959 AAATCTTTTG
Statistics
Matches: 674, Mismatches: 46, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
97 212 0.31
98 462 0.69
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (98 bp):
TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
CTTAGCTTCCTTTTAAAAACTCATTGAAAATCT
Found at i:7372579 original size:391 final size:389
Alignment explanation
Indices: 7372140--7372958 Score: 1334
Period size: 391 Copynumber: 2.1 Consensus size: 389
7372130 AATGACTTAC
* * *
7372140 TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTTTCAAGGAACCCCTAAAATTAGGC
1 TCATCAAGAAACCC-TAAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAATTAGGC
*
7372205 TTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCATGCTTAGTT
65 TTAGCTTCCTTTTAAAAACTCATTGAAAATCATCATCAAGAAACCCCTGAAAATCATGCTTAGTT
* * *
7372270 TCTTAGTTGTCAATGAACCCCTAAAAATTAGGCTTAGCTTCC-TTTAAAAAATTCATTGAAAATC
130 TCTTAGTTGTCAAGGAACCCATAAAAATTAGGCTTAGATTCCTTTTAAAAAA-TCATTGAAAATC
* * *
7372334 TTCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAATGAACCCCTAAAAATTAG
194 ATCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
*
7372399 GCTTAACTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCAGGCTTAC
259 GCTTAACTTCCTTTAAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCAGGCTTAC
* * * * *
7372464 TTTCTTAGTTGTCAATGAACCCCTAAAAATTAGGCTTAACTTCCTTTTAAAAACTCATTGAAAAT
324 TTTCTTAGTAGTCAAGGAACCCAT-AAAATTAGCCTTAACTTCCTTTCAAAAACTCATTGAAAAT
7372529 CT
388 CT
*
7372531 TCATCAAGAAACCCATAAAAATCATGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAATTAGGC
1 TCATCAAGAAACCC-TAAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAATTAGGC
* *
7372596 TTAGTTTCCTTTTAAAAACTCATTGAAAATCATCATCAAGAAACCCCTGAAAATCATGTTTAGTT
65 TTAGCTTCCTTTTAAAAACTCATTGAAAATCATCATCAAGAAACCCCTGAAAATCATGCTTAGTT
*
7372661 TCTTAGTTGTCAAGGAACCCATATAAATTAGGCTTAGATTCCTTTTAAAAAATCATTGAAAATCA
130 TCTTAGTTGTCAAGGAACCCATAAAAATTAGGCTTAGATTCCTTTTAAAAAATCATTGAAAATCA
7372726 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
195 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* * * *
7372791 CTTAGCTTCCTTTAAAAAATTCATTGAAAATCTTCATCAAGAAACCCTTGAAAATCAGGCTTAGT
260 CTTAACTTCCTTTAAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCAGGCTTACT
* *
7372856 TTCTTAGTAGTCAAGGAACCCATAAAATTAGCCTTAGCTTCCTTTCAAAACCTCATTGAAAATCT
325 TTCTTAGTAGTCAAGGAACCCATAAAATTAGCCTTAACTTCCTTTCAAAAACTCATTGAAAATCT
* *
7372921 TCATCAAGAAAACCCTAAAAATTAGGCTTAGTTTCTTA
1 TCATCAAG-AAACCCTAAAAATCAAGCTTAGTTTCTTA
7372959 AAATCTTTTG
Statistics
Matches: 397, Mismatches: 29, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
390 67 0.17
391 321 0.81
392 9 0.02
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (389 bp):
TCATCAAGAAACCCTAAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAATTAGGCT
TAGCTTCCTTTTAAAAACTCATTGAAAATCATCATCAAGAAACCCCTGAAAATCATGCTTAGTTT
CTTAGTTGTCAAGGAACCCATAAAAATTAGGCTTAGATTCCTTTTAAAAAATCATTGAAAATCAT
CATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGGC
TTAACTTCCTTTAAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCAGGCTTACTT
TCTTAGTAGTCAAGGAACCCATAAAATTAGCCTTAACTTCCTTTCAAAAACTCATTGAAAATCT
Found at i:7372672 original size:293 final size:293
Alignment explanation
Indices: 7372140--7372958 Score: 1309
Period size: 293 Copynumber: 2.8 Consensus size: 293
7372130 AATGACTTAC
* * * *
7372140 TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTTTCAAGGAACCCCT-AAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
*
7372204 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCCTGAAAATCATGCTTAGT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCATGAAAATCATGCTTAGT
* *
7372269 TTCTTAGTTGTCAATGAACCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAAATTCATTGAAAATC
131 TTCTTAGTTGTCAAGGAACCCCT-AAAATTAGGCTTAGCTTCCTTTAAAAAACTCATTGAAAATC
* *
7372334 TTCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAATGAACCCCTAAAAATTAG
195 TTCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAAGGAACCCATAAAAATTAG
* *
7372399 GCTTA-ACTTCCTTTTAAAAACTCATTGAAAATCT
260 GCTTAGA-TTCCTTTTAAAAAATCATTGAAAATCA
* *
7372433 TCATCAAGAAACCCCTGAAAATCAGGCTTACTTTCTTAGTTGTCAATGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* *
7372498 CTTAACTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCATAAAAATCATGCTTAGT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCATGAAAATCATGCTTAGT
* * *
7372563 TTCTTAGTTGTCAAGGAACCCCTAAAATTAGGCTTAGTTTCCTTTTAAAAACTCATTGAAAATCA
131 TTCTTAGTTGTCAAGGAACCCCTAAAATTAGGCTTAGCTTCCTTTAAAAAACTCATTGAAAATCT
* *
7372628 TCATCAAGAAACCCCTGAAAATCATGTTTAGTTTCTTAGTTGTCAAGGAACCCATATAAATTAGG
196 TCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAAGGAACCCATAAAAATTAGG
7372693 CTTAGATTCCTTTTAAAAAATCATTGAAAATCA
261 CTTAGATTCCTTTTAAAAAATCATTGAAAATCA
7372726 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
* * * *
7372791 CTTAGCTTCCTTTAAAAAATTCATTGAAAATCTTCATCAAGAAACCCTTGAAAATCAGGCTTAGT
66 CTTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCATGAAAATCATGCTTAGT
* * * * *
7372856 TTCTTAGTAGTCAAGGAACCCATAAAATTAGCCTTAGCTTCCTTTCAAAACCTCATTGAAAATCT
131 TTCTTAGTTGTCAAGGAACCCCTAAAATTAGGCTTAGCTTCCTTTAAAAAACTCATTGAAAATCT
* * * *
7372921 TCATCAAGAAAACCCTAAAAATTAGGCTTAGTTTCTTA
196 TCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTA
7372959 AAATCTTTTG
Statistics
Matches: 484, Mismatches: 40, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
293 390 0.81
294 94 0.19
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (293 bp):
TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAGG
CTTAGCTTCCTTTTAAAAACTCATTGAAAATCTTCATCAAGAAACCCATGAAAATCATGCTTAGT
TTCTTAGTTGTCAAGGAACCCCTAAAATTAGGCTTAGCTTCCTTTAAAAAACTCATTGAAAATCT
TCATCAAGAAACCCCTGAAAATCATGCTTAGTTTCTTAGTTGTCAAGGAACCCATAAAAATTAGG
CTTAGATTCCTTTTAAAAAATCATTGAAAATCA
Found at i:7373010 original size:38 final size:38
Alignment explanation
Indices: 7372959--7373037 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
7372949 TAGTTTCTTA
* *
7372959 AAATCTTTTGTTTCGAGCGAAACTATCTCAAGCGAGAT
1 AAATCTTCTGTTTCGAGCGAAACCATCTCAAGCGAGAT
* *
7372997 AAATCTTCTGTTTCGAGTGAATCCATCTCAAGCGAGAT
1 AAATCTTCTGTTTCGAGCGAAACCATCTCAAGCGAGAT
7373035 AAA
1 AAA
7373038 ATCTATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (38 bp):
AAATCTTCTGTTTCGAGCGAAACCATCTCAAGCGAGAT
Found at i:7374356 original size:14 final size:14
Alignment explanation
Indices: 7374339--7374419 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
7374329 CTTTGTTTTT
7374339 TCTTTCTTCTTTGC
1 TCTTTCTTCTTTGC
*
7374353 TCTTTGC-TCTTT-T
1 TCTTT-CTTCTTTGC
7374366 TCTTTACTT-TTT--
1 TCTTT-CTTCTTTGC
* *
7374378 TCTTTTTTCTTTTC
1 TCTTTCTTCTTTGC
*
7374392 TCTTTTTTTCTTTGC
1 TC-TTTCTTCTTTGC
*
7374407 TCTTTTTTCTTTG
1 TCTTTCTTCTTTG
7374420 TTTTTATCCT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
11 2 0.04
12 8 0.14
13 9 0.16
14 24 0.42
15 14 0.25
ACGTcount: A:0.01, C:0.21, G:0.05, T:0.73
Consensus pattern (14 bp):
TCTTTCTTCTTTGC
Found at i:7374366 original size:39 final size:38
Alignment explanation
Indices: 7374317--7374396 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 38
7374307 TTTTTTTTTT
*
7374317 TTTGCTTTTTTACTTT-GTTTTTTCTTTCTTCTTTGCTC
1 TTTGCTTTTTT-CTTTACTTTTTTCTTTCTTCTTTGCTC
* *
7374355 TTTGCTCTTTTTCTTTACTTTTTTCTTTTTTCTTTTCTC
1 TTTGCT-TTTTTCTTTACTTTTTTCTTTCTTCTTTGCTC
7374394 TTT
1 TTT
7374397 TTTTCTTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.27
39 27 0.73
ACGTcount: A:0.03, C:0.19, G:0.05, T:0.74
Consensus pattern (38 bp):
TTTGCTTTTTTCTTTACTTTTTTCTTTCTTCTTTGCTC
Found at i:7374401 original size:22 final size:22
Alignment explanation
Indices: 7374353--7374423 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 22
7374343 TCTTCTTTGC
*
7374353 TCTTTGCTCTTTTTCTTTACTTTTT
1 TCTTTGCTC-TTTTCTCT--TTTTT
**
7374378 TCTTTTTTCTTTTCTCTTTTTT
1 TCTTTGCTCTTTTCTCTTTTTT
*
7374400 TCTTTGCTCTTTTTTCTTTGTTT
1 TCTTTGCTCTTTTCTCTTT-TTT
7374423 T
1 T
7374424 TATCCTCGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 21 0.54
23 4 0.10
24 7 0.18
25 7 0.18
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.76
Consensus pattern (22 bp):
TCTTTGCTCTTTTCTCTTTTTT
Found at i:7378125 original size:32 final size:29
Alignment explanation
Indices: 7378081--7378169 Score: 81
Period size: 29 Copynumber: 2.9 Consensus size: 29
7378071 ATGAAATATT
*
7378081 AAAACAATTAAAACATAATAAAAATAATAAA
1 AAAACAAATAAAA-A-AATAAAAATAATAAA
* *
7378112 AACAACAAAT-AAAAAATTAAAATAGTAAA
1 AA-AACAAATAAAAAAATAAAAATAATAAA
7378141 AAAACAACATAAAATAAAAATAAAAATAA
1 AAAACAA-AT--AA-AAAAATAAAAATAA
7378170 AATATGAGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
28 5 0.11
29 17 0.36
30 1 0.02
31 5 0.11
32 7 0.15
33 12 0.26
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.17
Consensus pattern (29 bp):
AAAACAAATAAAAAAATAAAAATAATAAA
Found at i:7378133 original size:20 final size:21
Alignment explanation
Indices: 7378075--7378133 Score: 52
Period size: 20 Copynumber: 2.9 Consensus size: 21
7378065 AAAACTATGA
*
7378075 AATATTAAAACAATTAAAACAT
1 AATAATAAAA-AATTAAAACAT
* *
7378097 AATAA-AAATAATAAAAACA-
1 AATAATAAAAAATTAAAACAT
7378116 ACA-AATAAAAAATTAAAA
1 A-ATAATAAAAAATTAAAA
7378134 TAGTAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.10
20 20 0.67
21 3 0.10
22 4 0.13
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
AATAATAAAAAATTAAAACAT
Found at i:7378144 original size:40 final size:40
Alignment explanation
Indices: 7378080--7378174 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
7378070 TATGAAATAT
* * *
7378080 TAAAACAATTAAAACATAATAAAAATAATA-AAAACAACAAA
1 TAAAA-AATTAAAATATAATAAAAACAACATAAAACAA-AAA
*
7378121 TAAAAAATTAAAATAGTAA-AAAAACAACATAAAATAAAAA
1 TAAAAAATTAAAATA-TAATAAAAACAACATAAAACAAAAA
7378161 T-AAAAA-TAAAATAT
1 TAAAAAATTAAAATAT
7378175 GAGGACCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
37 1 0.02
38 7 0.15
39 5 0.10
40 21 0.44
41 14 0.29
ACGTcount: A:0.74, C:0.06, G:0.01, T:0.19
Consensus pattern (40 bp):
TAAAAAATTAAAATATAATAAAAACAACATAAAACAAAAA
Found at i:7378171 original size:29 final size:29
Alignment explanation
Indices: 7378083--7378171 Score: 90
Period size: 32 Copynumber: 2.9 Consensus size: 29
7378073 GAAATATTAA
*
7378083 AACAATTAAAACATAATAAAAATAATAAAAAC
1 AACAAATAAAA-A-AATAAAAATAA-AAAAAC
*
7378115 AACAAATAAAAAATTAAAATAGTAAAAAAAC
1 AACAAATAAAAAAATAAAA-A-TAAAAAAAC
7378146 AACATAA-AATAAAAATAAAAATAAAA
1 AACA-AATAA-AAAAATAAAAATAAAA
7378172 TATGAGGACC
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
30 11 0.22
31 15 0.30
32 24 0.48
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.17
Consensus pattern (29 bp):
AACAAATAAAAAAATAAAAATAAAAAAAC
Found at i:7379568 original size:17 final size:18
Alignment explanation
Indices: 7379536--7379572 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7379526 GTTATTAATT
7379536 GGGCTTTAGTTGGGTTTG
1 GGGCTTTAGTTGGGTTTG
*
7379554 GGGCTTT-GTTTGGTTTG
1 GGGCTTTAGTTGGGTTTG
7379571 GG
1 GG
7379573 ATTAAAACGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.03, C:0.05, G:0.46, T:0.46
Consensus pattern (18 bp):
GGGCTTTAGTTGGGTTTG
Found at i:7382085 original size:21 final size:21
Alignment explanation
Indices: 7382023--7382091 Score: 99
Period size: 20 Copynumber: 3.4 Consensus size: 21
7382013 GATCTCGAAT
*
7382023 TTCGCAACAC-AGTTTCCAAA
1 TTCGCAACACGAATTTCCAAA
7382043 TTCGCAACACG-ATTTCCAAA
1 TTCGCAACACGAATTTCCAAA
7382063 TTCGCAACACTGAATTT-CAAA
1 TTCGCAACAC-GAATTTCCAAA
7382084 TTCGCAAC
1 TTCGCAAC
7382092 TCGATTTTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
20 28 0.62
21 13 0.29
22 4 0.09
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.26
Consensus pattern (21 bp):
TTCGCAACACGAATTTCCAAA
Found at i:7382110 original size:20 final size:20
Alignment explanation
Indices: 7382061--7382164 Score: 95
Period size: 20 Copynumber: 5.2 Consensus size: 20
7382051 ACGATTTCCA
* **
7382061 AATTCGCAACACTGAATTTCA
1 AATTCGCAACTC-GAATTTTG
*
7382082 AATTCGCAACTCGATTTTTG
1 AATTCGCAACTCGAATTTTG
* *
7382102 AATTAGCAACGCGAATTTTG
1 AATTCGCAACTCGAATTTTG
**
7382122 TTTTCGCAACTCG-ATTTTCG
1 AATTCGCAACTCGAATTTT-G
*
7382142 AATTCGCAACACGAATTTT-
1 AATTCGCAACTCGAATTTTG
7382161 AATT
1 AATT
7382165 TCACACCATG
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
19 9 0.13
20 42 0.63
21 16 0.24
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (20 bp):
AATTCGCAACTCGAATTTTG
Found at i:7382160 original size:40 final size:40
Alignment explanation
Indices: 7382000--7382162 Score: 150
Period size: 40 Copynumber: 4.0 Consensus size: 40
7381990 AATGACCAAC
* * * * *
7382000 AAATTCGTAACGCGA-TCTCGAATTTCGCAACAC-AGTTTCC
1 AAATTCGCAACTCGATTTTCGAA-TTCGCAACACGAATTT-T
* * * *
7382040 AAATTCGCAACACGATTTCCAAATTCGCAACACTGAATTTC
1 AAATTCGCAACTCGATTTTCGAATTCGCAACAC-GAATTTT
* * *
7382081 AAATTCGCAACTCGATTTTTGAATTAGCAACGCGAATTTT
1 AAATTCGCAACTCGATTTTCGAATTCGCAACACGAATTTT
***
7382121 GTTTTCGCAACTCGATTTTCGAATTCGCAACACGAATTTT
1 AAATTCGCAACTCGATTTTCGAATTCGCAACACGAATTTT
7382161 AA
1 AA
7382163 TTTCACACCA
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
40 63 0.64
41 32 0.32
42 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Consensus pattern (40 bp):
AAATTCGCAACTCGATTTTCGAATTCGCAACACGAATTTT
Found at i:7382347 original size:14 final size:15
Alignment explanation
Indices: 7382328--7382365 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7382318 TCCTCATCTC
7382328 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
7382342 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
7382358 TAATTTTT
1 TAATTTTT
7382366 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:7386365 original size:21 final size:21
Alignment explanation
Indices: 7386339--7386453 Score: 131
Period size: 21 Copynumber: 5.5 Consensus size: 21
7386329 GTGAATCGGG
* *
7386339 CTCTTGAACGGTGGGAGGGAC
1 CTCTTGAACGATGGGAGGGGC
** *
7386360 CTCTTGAACGATGATAGAGGC
1 CTCTTGAACGATGGGAGGGGC
* * *
7386381 TTTTTGAACGGTGGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
*
7386402 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
* *
7386423 CTCTTGAATGATAGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
7386444 CTCTTGAACG
1 CTCTTGAACG
7386454 GTGATAGGTG
Statistics
Matches: 75, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.23
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGC
Found at i:7386405 original size:42 final size:42
Alignment explanation
Indices: 7386339--7386460 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
7386329 GTGAATCGGG
*
7386339 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGATAGAGGC
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATGATAGAGGC
* * * *
7386381 TTTTTGAACGGTGGGAGGGGCCTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATGATAGAGGC
* * * *
7386423 CTCTTGAATGATAGGAGGGGCCTCTTGAACGGTGATAG
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATGATAG
7386461 GTGAATCGGG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.22, C:0.16, G:0.38, T:0.24
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATGATAGAGGC
Found at i:7386883 original size:21 final size:21
Alignment explanation
Indices: 7386747--7386908 Score: 67
Period size: 21 Copynumber: 7.7 Consensus size: 21
7386737 TAGAGCGACT
* *
7386747 ACCTCATCACGTAAAGTA-GA
1 ACCTCATCACGTAAAGCACCA
* *
7386767 TCCCTCATCACCGTAAAACACCA
1 -ACCTCATCA-CGTAAAGCACCA
*** * * * *
7386790 TTGTCATCGCGTAAAACATCT
1 ACCTCATCACGTAAAGCACCA
*
7386811 ACCTCACCACGTAAAG-ACCA
1 ACCTCATCACGTAAAGCACCA
** *
7386831 TACCTCATCACGCCATGCACCA
1 -ACCTCATCACGTAAAGCACCA
*** * *
7386853 TTATCGTCACGTAAAGTACCA
1 ACCTCATCACGTAAAGCACCA
* ***
7386874 ACCTCATCACGCAAAGCATTG
1 ACCTCATCACGTAAAGCACCA
7386895 ACCTCATCACGTAA
1 ACCTCATCACGTAA
7386909 CTCCCCTAAC
Statistics
Matches: 97, Mismatches: 40, Indels: 8
0.67 0.28 0.06
Matches are distributed among these distances:
20 2 0.02
21 78 0.80
22 16 0.16
23 1 0.01
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.21
Consensus pattern (21 bp):
ACCTCATCACGTAAAGCACCA
Found at i:7388488 original size:19 final size:19
Alignment explanation
Indices: 7388437--7388490 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
7388427 AGTAGTTTTT
*
7388437 GAAACTTAAATTCGCAACGC
1 GAAAC-TAAAATCGCAACGC
*
7388457 GAAAATGAAAATCGCAACGC
1 GAAACT-AAAATCGCAACGC
7388477 GAAACTAAAATCGC
1 GAAACTAAAATCGC
7388491 GTTGCGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.30
20 21 0.70
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (19 bp):
GAAACTAAAATCGCAACGC
Found at i:7388540 original size:20 final size:20
Alignment explanation
Indices: 7388517--7388555 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7388507 TCGCATTGCG
7388517 ATTTTCGTGTTGCGAATTTC
1 ATTTTCGTGTTGCGAATTTC
7388537 ATTTTCGTGTTGCGAATTT
1 ATTTTCGTGTTGCGAATTT
7388556 AAGTTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.13, G:0.21, T:0.51
Consensus pattern (20 bp):
ATTTTCGTGTTGCGAATTTC
Found at i:7388562 original size:20 final size:20
Alignment explanation
Indices: 7388519--7388562 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7388509 GCATTGCGAT
* *
7388519 TTTCGTGTTGCGAATTTCAT
1 TTTCGTGTTGCGAATTTAAG
7388539 TTTCGTGTTGCGAATTTAAG
1 TTTCGTGTTGCGAATTTAAG
7388559 TTTC
1 TTTC
7388563 AAAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.14, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGTGTTGCGAATTTAAG
Found at i:7388956 original size:2 final size:2
Alignment explanation
Indices: 7388949--7388980 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7388939 TTATTTTATC
7388949 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7388981 GCTAAAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7394046 original size:38 final size:39
Alignment explanation
Indices: 7393998--7394090 Score: 170
Period size: 38 Copynumber: 2.4 Consensus size: 39
7393988 AATAACATAT
7393998 AAAAATTAATATATTAATAATTAAATTT-AAAAATCTAA
1 AAAAATTAATATATTAATAATTAAATTTAAAAAATCTAA
*
7394036 AAAAATTAATATATTAATAATTTAATTTAAAAAATCTAA
1 AAAAATTAATATATTAATAATTAAATTTAAAAAATCTAA
7394075 AAAAATTAATATATTA
1 AAAAATTAATATATTA
7394091 TTTTTTTAGT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 27 0.51
39 26 0.49
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (39 bp):
AAAAATTAATATATTAATAATTAAATTTAAAAAATCTAA
Found at i:7395021 original size:27 final size:27
Alignment explanation
Indices: 7394983--7395035 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
7394973 GGCCGTTTGT
7394983 TTGTCTCTTAATGAAATTATTCAGCGC
1 TTGTCTCTTAATGAAATTATTCAGCGC
*
7395010 TTGTCTTTTAATGAAATTATTCAGCG
1 TTGTCTCTTAATGAAATTATTCAGCG
7395036 TTGAATATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (27 bp):
TTGTCTCTTAATGAAATTATTCAGCGC
Found at i:7395065 original size:29 final size:29
Alignment explanation
Indices: 7395025--7395094 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
7395015 TTTTAATGAA
* *
7395025 ATTATTCAGCGTTGAATATTGAATTGTTT
1 ATTATTCAGCGTTGAATATTGAACTGTTC
*
7395054 ATTATTCAGCGTTGAATGTTGAACTGTTC
1 ATTATTCAGCGTTGAATATTGAACTGTTC
*
7395083 AGTATTCAGCGT
1 ATTATTCAGCGT
7395095 GTTTGTTTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (29 bp):
ATTATTCAGCGTTGAATATTGAACTGTTC
Found at i:7397675 original size:98 final size:98
Alignment explanation
Indices: 7397561--7397756 Score: 392
Period size: 98 Copynumber: 2.0 Consensus size: 98
7397551 CAGCAGAAGC
7397561 AGCAGCTTCCTTACTACCTCCACATAACATGCCCACAAACACTCCAATTACAGAGGCTGTGCCGC
1 AGCAGCTTCCTTACTACCTCCACATAACATGCCCACAAACACTCCAATTACAGAGGCTGTGCCGC
7397626 AGTTTACAGTTCCAGCTAATCTTTCAGCTCTCT
66 AGTTTACAGTTCCAGCTAATCTTTCAGCTCTCT
7397659 AGCAGCTTCCTTACTACCTCCACATAACATGCCCACAAACACTCCAATTACAGAGGCTGTGCCGC
1 AGCAGCTTCCTTACTACCTCCACATAACATGCCCACAAACACTCCAATTACAGAGGCTGTGCCGC
7397724 AGTTTACAGTTCCAGCTAATCTTTCAGCTCTCT
66 AGTTTACAGTTCCAGCTAATCTTTCAGCTCTCT
7397757 GATTCAGAAA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.27, C:0.34, G:0.13, T:0.27
Consensus pattern (98 bp):
AGCAGCTTCCTTACTACCTCCACATAACATGCCCACAAACACTCCAATTACAGAGGCTGTGCCGC
AGTTTACAGTTCCAGCTAATCTTTCAGCTCTCT
Found at i:7401644 original size:3 final size:3
Alignment explanation
Indices: 7401624--7401686 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
7401614 TAGTCACCTG
* * *
7401624 TTA TTA TCA TCA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7401672 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
7401687 AGAGAGGATA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7402418 original size:26 final size:26
Alignment explanation
Indices: 7402372--7402455 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
7402362 ATGTTAGATA
*
7402372 AAAATGTAAGAATAAATAAATAAAATT
1 AAAATGTAAGAATAAACAAATAAAA-T
*
7402399 AAAATG-AAGAA-AAACCAAATTAAAT
1 AAAATGTAAGAATAAA-CAAATAAAAT
*
7402424 AAAA-GATAAG-ATAAAGAAAGTAAAAAT
1 AAAATG-TAAGAATAAACAAA-T-AAAAT
7402451 AAAAT
1 AAAAT
7402456 AGTTAGTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
24 1 0.02
25 12 0.26
26 19 0.41
27 14 0.30
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (26 bp):
AAAATGTAAGAATAAACAAATAAAAT
Found at i:7402743 original size:22 final size:23
Alignment explanation
Indices: 7402703--7402749 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
7402693 TGTGCGTATA
7402703 AATAAAGTTAAATAAATAAA-GT
1 AATAAAGTTAAATAAATAAATGT
*
7402725 AATAATAGTTAAA-ACATAAATGT
1 AATAA-AGTTAAATAAATAAATGT
7402748 AA
1 AA
7402750 AAGACCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.28
Consensus pattern (23 bp):
AATAAAGTTAAATAAATAAATGT
Found at i:7403346 original size:34 final size:35
Alignment explanation
Indices: 7403274--7403393 Score: 170
Period size: 34 Copynumber: 3.4 Consensus size: 35
7403264 AAGGTCTTGA
*
7403274 GTTTCAAGAGAAACATTTTCAAAGGTTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
*
7403309 GTTTCAAGAGAAACAATTTCAAAGG-TTATTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
* *
7403343 GTTTCTAGAGAAATAATTTCAAAGGTTTTTTTTTCGT
1 GTTTCAAGAGAAACAATTTCAAAGG-TTTTTTTT-GT
*
7403380 GTTTCAAGATAAAC
1 GTTTCAAGAGAAAC
7403394 TGTCTCAAGG
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
34 31 0.42
35 24 0.32
36 6 0.08
37 13 0.18
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (35 bp):
GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
Found at i:7404196 original size:34 final size:34
Alignment explanation
Indices: 7404152--7404237 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 34
7404142 GTGGATGGCC
*
7404152 CCTTCATCGTGAAGTTGAGCCTTGACTTGAATAT
1 CCTTCGTCGTGAAGTTGAGCCTTGACTTGAATAT
*
7404186 CCTTCGTCGTGAAGTTGAGCCTTGAGTTGAATAT
1 CCTTCGTCGTGAAGTTGAGCCTTGACTTGAATAT
7404220 CCTTCGTCGTGAAGTTGA
1 CCTTCGTCGTGAAGTTGA
7404238 AATCCAAGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (34 bp):
CCTTCGTCGTGAAGTTGAGCCTTGACTTGAATAT
Found at i:7405839 original size:69 final size:69
Alignment explanation
Indices: 7405724--7405861 Score: 186
Period size: 69 Copynumber: 2.0 Consensus size: 69
7405714 TGTCTCTCTC
* * * *
7405724 TTGATGCTCCATGATCTTCGAGTGGAGTGATTCAGTAATTCAGAAATTATTGTGCTTGATCGATC
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTGTGCTGGATCAATC
7405789 TCAT
66 TCAT
* * ** * *
7405793 TTGATGCTCTATGATCTTCGAGTGAAGTGGTTTTGTGATTCGGAAATGATTGTGCTGGATCAATC
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTGTGCTGGATCAATC
7405858 TCAT
66 TCAT
7405862 AGTTTGAATC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.38
Consensus pattern (69 bp):
TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTGTGCTGGATCAATC
TCAT
Found at i:7405954 original size:11 final size:12
Alignment explanation
Indices: 7405940--7405987 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
7405930 TCAATTTTCC
7405940 TTTTTTTCTCTT
1 TTTTTTTCTCTT
7405952 TTTATTTTCTCTT
1 TTT-TTTTCTCTT
*
7405965 TGTTTTTTTTCTCT
1 T-TTTTTTCTCT-T
*
7405979 TTTTGTTCT
1 TTTTTTTCT
7405988 GATTGAATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 3 0.10
13 23 0.77
14 4 0.13
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.79
Consensus pattern (12 bp):
TTTTTTTCTCTT
Found at i:7405961 original size:13 final size:13
Alignment explanation
Indices: 7405943--7405982 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
7405933 ATTTTCCTTT
7405943 TTTTCTCTTTTTA
1 TTTTCTCTTTTTA
*
7405956 TTTTCTCTTTGTTTT
1 TTTTCTC-TT-TTTA
7405971 TTTTCTCTTTTT
1 TTTTCTCTTTTT
7405983 GTTCTGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.42
14 4 0.17
15 10 0.42
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.80
Consensus pattern (13 bp):
TTTTCTCTTTTTA
Found at i:7405974 original size:15 final size:14
Alignment explanation
Indices: 7405940--7405982 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
7405930 TCAATTTTCC
7405940 TTTTTTTCTC-TTT
1 TTTTTTTCTCTTTT
*
7405953 TTATTTTCTCTTTGT
1 TTTTTTTCTCTTT-T
7405968 TTTTTTTCTCTTTT
1 TTTTTTTCTCTTTT
7405982 T
1 T
7405983 GTTCTGATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 9 0.35
14 4 0.15
15 13 0.50
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTTTTCTCTTTT
Found at i:7409094 original size:33 final size:33
Alignment explanation
Indices: 7409057--7409199 Score: 119
Period size: 33 Copynumber: 4.0 Consensus size: 33
7409047 AGAAGAAGAA
7409057 ATATATAAATAAATAAAATAATAAAAATAATAT
1 ATATATAAATAAATAAAATAATAAAAATAATAT
*
7409090 ATATATATATATAAT-AAATAAATAAAATAGTAAATAT
1 ATATATAAATA-AATAAAAT-AATAAAA-A-T-AATAT
*
7409127 ATATATAAATTAATAAAACTGATAATAAAAAAATAATAT
1 ATATATAAATAAAT-AAA---ATAAT--AAAAATAATAT
* * *
7409166 ATATATATATAATCTAAAAAAATAAAAAT-ATAT
1 ATATATAAATAA-ATAAAATAATAAAAATAATAT
7409199 A
1 A
7409200 CTAAAGTAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
33 19 0.21
34 16 0.18
35 1 0.01
36 8 0.09
37 14 0.16
38 2 0.02
39 18 0.20
40 5 0.06
41 3 0.03
42 4 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (33 bp):
ATATATAAATAAATAAAATAATAAAAATAATAT
Found at i:7409105 original size:29 final size:28
Alignment explanation
Indices: 7409055--7409144 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 28
7409045 AAAGAAGAAG
* * *
7409055 AAATATATAAATAAATAAAATAATAAAA
1 AAATATATATATATATATAATAATAAAA
7409083 ATAATATATATATATATATAATAAATAAATA
1 A-AATATATATATATATATAAT-AATAAA-A
*
7409114 AAATAGTAAATATATATATAAATTAATAAAA
1 AAATA-TATATATATATAT-AA-TAATAAAA
7409145 CTGATAATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
28 1 0.02
29 17 0.33
30 10 0.19
31 15 0.29
32 8 0.15
33 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (28 bp):
AAATATATATATATATATAATAATAAAA
Found at i:7409190 original size:48 final size:48
Alignment explanation
Indices: 7409100--7409192 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
7409090 ATATATATAT
* **
7409100 ATAATAAATAAATAAAATAGTAAATATATATATAAATTAATAAAACTG
1 ATAATAAAAAAATAAAATAGTAAATATATATATAAAAAAATAAAACTG
* * *
7409148 ATAATAAAAAAATAATATA-TATATATATAATCTAAAAAAATAAAA
1 ATAATAAAAAAATAAAATAGTAAATATAT-ATATAAAAAAATAAAA
7409193 ATATATACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 8 0.21
48 30 0.79
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (48 bp):
ATAATAAAAAAATAAAATAGTAAATATATATATAAAAAAATAAAACTG
Found at i:7409569 original size:37 final size:37
Alignment explanation
Indices: 7409519--7409663 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
7409509 TCGTAGAACT
*
7409519 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCC
1 TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTATCC
*
7409556 TATTTTTAGGAGTTTGAATCCTAGTAAAATTCTATCC
1 TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTATCC
*
7409593 TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTATCC
* *
7409630 TATTTTTAGGAGTTTGAATCCTACTAAAATTCTA
1 TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTA
7409664 ACGTTTGCTT
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCCTAGTAAAACTCTATCC
Found at i:7414196 original size:14 final size:14
Alignment explanation
Indices: 7414177--7414204 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7414167 GGTAACGATG
7414177 CCAATTTCAATCCA
1 CCAATTTCAATCCA
7414191 CCAATTTCAATCCA
1 CCAATTTCAATCCA
7414205 ACAACTCCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCAATTTCAATCCA
Found at i:7420493 original size:22 final size:21
Alignment explanation
Indices: 7420443--7420495 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
7420433 ATAAAACGTT
*
7420443 TAAAAAAAAGATAAATTAAAA
1 TAAAAAAAAGATAAATGAAAA
*
7420464 TGACAAAAAATGGA-AAATGAAAA
1 T-A-AAAAAA-AGATAAATGAAAA
7420487 TAAAAAAAA
1 TAAAAAAAA
7420496 AACAGTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
21 7 0.27
22 2 0.08
23 15 0.58
24 2 0.08
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (21 bp):
TAAAAAAAAGATAAATGAAAA
Found at i:7421247 original size:31 final size:31
Alignment explanation
Indices: 7421177--7421248 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
7421167 TCATTAAAAA
* *
7421177 TAGGTGCATAATGTATTTCCCGTTACACTTT
1 TAGGTGCCTAATGTATTTCCCATTACACTTT
** *
7421208 TACTTGCCTAATGT-TTTCTCTATTACACTTT
1 TAGGTGCCTAATGTATTTC-CCATTACACTTT
7421239 TAGGTGCCTA
1 TAGGTGCCTA
7421249 CACAACAACG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (31 bp):
TAGGTGCCTAATGTATTTCCCATTACACTTT
Found at i:7431650 original size:40 final size:40
Alignment explanation
Indices: 7431596--7431710 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 40
7431586 TTTTTATTCA
* * *
7431596 TAATTT-TCAAATTATTTTACTCTAACATTGTAAATTTC-
1 TAATTTCTTAAATTATTTCACTCTAACATTCTAAATTTCT
*
7431634 TAATTTCTTAAAATTATTTCAC-CATAACATCCTAAA-TTCT
1 TAATTTCTT-AAATTATTTCACTC-TAACATTCTAAATTTCT
* *
7431674 TAATTTCTT-AATTATTTCACCTTTAACATTTTAAATT
1 TAATTTCTTAAATTATTTCA-CTCTAACATTCTAAATT
7431711 ATTTTTTTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
38 16 0.25
39 16 0.25
40 31 0.49
ACGTcount: A:0.35, C:0.16, G:0.01, T:0.49
Consensus pattern (40 bp):
TAATTTCTTAAATTATTTCACTCTAACATTCTAAATTTCT
Found at i:7440070 original size:36 final size:35
Alignment explanation
Indices: 7440023--7440090 Score: 118
Period size: 36 Copynumber: 1.9 Consensus size: 35
7440013 TGGTTTTCCA
7440023 GAAAATGAATTACTGAAATTTGAATTACTGGAACTG
1 GAAAATGAATTACTGAAATTTGAATT-CTGGAACTG
*
7440059 GAAAATGAATTACTGGAATTTGAATTCTGGAA
1 GAAAATGAATTACTGAAATTTGAATTCTGGAA
7440091 AATGAATTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 6 0.19
36 25 0.81
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (35 bp):
GAAAATGAATTACTGAAATTTGAATTCTGGAACTG
Found at i:7440096 original size:14 final size:15
Alignment explanation
Indices: 7440055--7440100 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
7440045 AATTACTGGA
7440055 ACTGGAAAATGAATT
1 ACTGGAAAATGAATT
**
7440070 ACTGGAATTTGAATT
1 ACTGGAAAATGAATT
7440085 -CTGGAAAATGAATT
1 ACTGGAAAATGAATT
7440099 AC
1 AC
7440101 ATTTCTGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (15 bp):
ACTGGAAAATGAATT
Found at i:7440493 original size:23 final size:23
Alignment explanation
Indices: 7440444--7440508 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
7440434 TTGTTATATT
* **
7440444 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAATATATTAATTACA
* *
7440467 ATATTTTAAATATCTTTATTACA
1 ATATTTTAAATATATTAATTACA
7440490 ATATTATTTAAATAT-TTAA
1 ATA-T-TTTAAATATATTAA
7440509 ATAATATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 21 0.62
24 4 0.12
25 9 0.26
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATTTTAAATATATTAATTACA
Found at i:7440565 original size:24 final size:24
Alignment explanation
Indices: 7440532--7440579 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7440522 TTATTAAATA
* *
7440532 TAAAAAAAAATTATTATATATTAT
1 TAAAAAAAAAATATAATATATTAT
* *
7440556 TAAAATAAAAATATAATATCTTAT
1 TAAAAAAAAAATATAATATATTAT
7440580 ATTATTATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAAAAAAAAATATAATATATTAT
Found at i:7440580 original size:29 final size:29
Alignment explanation
Indices: 7440513--7440591 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
7440503 ATTTAAATAA
7440513 TATTAT-TCATTATTAAATATAAAAAAAAAT
1 TATTATAT-ATTATTAAA-ATAAAAAAAAAT
*
7440543 TATTATATATTATTAAAATAAAAATATAA-
1 TATTATATATTATTAAAATAAAAA-AAAAT
*
7440572 TATCT-TATATTATTATAATA
1 TAT-TATATATTATTAAAATA
7440592 TAATTGATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
29 24 0.55
30 19 0.43
31 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (29 bp):
TATTATATATTATTAAAATAAAAAAAAAT
Found at i:7440632 original size:22 final size:23
Alignment explanation
Indices: 7440607--7440650 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7440597 GATTATTTTA
7440607 TATAATATTAAAAATA-TAATAT
1 TATAATATTAAAAATATTAATAT
* *
7440629 TATATTATTATAAATATTAATA
1 TATAATATTAAAAATATTAATA
7440651 AATAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATATTAAAAATATTAATAT
Found at i:7440893 original size:42 final size:42
Alignment explanation
Indices: 7440843--7440957 Score: 178
Period size: 42 Copynumber: 2.7 Consensus size: 42
7440833 GAATTACATT
*
7440843 CCGAAAAACCAATTACGTGAAACAAACACGGGAAAACATATTC
1 CCGAAAAACGAATTACGTGAAACAAACACGGGAAAACAT-TTC
* *
7440886 CCG-AAAACGAATTACGTGAAACAAACACGGGAAAATATTTT
1 CCGAAAAACGAATTACGTGAAACAAACACGGGAAAACATTTC
*
7440927 TCGAAAAACGAATTACGTGAAACAAACACGG
1 CCGAAAAACGAATTACGTGAAACAAACACGG
7440958 AAATTCGGGG
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
41 4 0.06
42 60 0.90
43 3 0.04
ACGTcount: A:0.48, C:0.20, G:0.17, T:0.16
Consensus pattern (42 bp):
CCGAAAAACGAATTACGTGAAACAAACACGGGAAAACATTTC
Found at i:7449012 original size:14 final size:15
Alignment explanation
Indices: 7448993--7449134 Score: 51
Period size: 16 Copynumber: 9.1 Consensus size: 15
7448983 TGTAGGTAGT
7448993 ATAATAATA-ATAAA
1 ATAATAATATATAAA
7449007 ATAATATATATATAATA
1 ATAATA-ATATATAA-A
* * *
7449024 ATAACAA-AGACAAA
1 ATAATAATATATAAA
* * * *
7449038 AGATCTAAAAAATAAA
1 ATA-ATAATATATAAA
*
7449054 AAATATAATATAATAATA
1 ATA-ATAATAT-ATAA-A
*
7449072 ATGAATAA-AAATGAAA
1 AT-AATAATATAT-AAA
7449088 ATAATAAATATATAAA
1 ATAAT-AATATATAAA
*
7449104 A-AATAA-ATAGAAA
1 ATAATAATATATAAA
*
7449117 TATACATAAGATATAAA
1 -ATA-ATAATATATAAA
7449134 A
1 A
7449135 GAAATAATTA
Statistics
Matches: 96, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
13 6 0.06
14 12 0.12
15 16 0.17
16 33 0.34
17 22 0.23
18 6 0.06
19 1 0.01
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (15 bp):
ATAATAATATATAAA
Found at i:7449106 original size:25 final size:23
Alignment explanation
Indices: 7448993--7449108 Score: 67
Period size: 25 Copynumber: 4.8 Consensus size: 23
7448983 TGTAGGTAGT
*
7448993 ATAATAATAATAAAATAATAT-AT
1 ATAATAATAATAAAA-AATATAAA
* * *
7449016 AT-ATAATAATAACAAAGACAAA
1 ATAATAATAATAAAAAATATAAA
* * * *
7449038 AGATCTAAAAAATAAAAAATATAAT
1 ATA-AT-AATAATAAAAAATATAAA
7449063 ATAATAATAATGAATAAAA-ATGAAA
1 ATAATAATAAT-AA-AAAATAT-AAA
7449088 ATAATAAATATATAAAAAATA
1 ATAAT-AATA-ATAAAAAATA
7449109 AATAGAAATA
Statistics
Matches: 68, Mismatches: 15, Indels: 17
0.68 0.15 0.17
Matches are distributed among these distances:
21 3 0.04
22 13 0.19
23 7 0.10
24 6 0.09
25 30 0.44
26 7 0.10
27 2 0.03
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (23 bp):
ATAATAATAATAAAAAATATAAA
Found at i:7449108 original size:15 final size:16
Alignment explanation
Indices: 7448993--7449167 Score: 68
Period size: 15 Copynumber: 10.9 Consensus size: 16
7448983 TGTAGGTAGT
7448993 ATAAT-AATA-ATAAA
1 ATAATAAATATATAAA
*
7449007 ATAATATATATATAATA
1 ATAATAAATATATAA-A
* * *
7449024 ATAACAAAGACA-AAA
1 ATAATAAATATATAAA
* *
7449039 GAT-CTAAA-AAATAAA
1 -ATAATAAATATATAAA
7449054 A-AATATAATATAATAATA
1 ATAATA-AATAT-ATAA-A
7449072 ATGAATAAA-A-ATGAAA
1 AT-AATAAATATAT-AAA
7449088 ATAATAAATATATAAA
1 ATAATAAATATATAAA
* *
7449104 A-AATAAATAGA-AAT
1 ATAATAAATATATAAA
*
7449118 ATACATAAGATATAAAAGAA
1 ATA-ATAA-ATAT-ATA-AA
7449138 ATAATTAAA-ATA-AAA
1 ATAA-TAAATATATAAA
7449153 ATAAATAAATATATA
1 AT-AATAAATATATA
7449168 CACATATATA
Statistics
Matches: 122, Mismatches: 14, Indels: 47
0.67 0.08 0.26
Matches are distributed among these distances:
14 13 0.11
15 36 0.30
16 29 0.24
17 22 0.18
18 6 0.05
19 5 0.04
20 11 0.09
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (16 bp):
ATAATAAATATATAAA
Found at i:7449120 original size:19 final size:18
Alignment explanation
Indices: 7449043--7449109 Score: 55
Period size: 20 Copynumber: 3.6 Consensus size: 18
7449033 ACAAAAGATC
*
7449043 TAAAAAATAAAAAATATAA
1 TAAAAAATAATAAATAT-A
* *
7449062 TATAATAATAATGAATA-A
1 TA-AAAAATAATAAATATA
*
7449080 AAATGAAAATAATAAATATA
1 TAA--AAAATAATAAATATA
7449100 TAAAAAATAA
1 TAAAAAATAA
7449110 ATAGAAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
17 1 0.03
18 9 0.24
19 13 0.35
20 14 0.38
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (18 bp):
TAAAAAATAATAAATATA
Found at i:7449158 original size:19 final size:19
Alignment explanation
Indices: 7449046--7449160 Score: 58
Period size: 19 Copynumber: 5.9 Consensus size: 19
7449036 AAAGATCTAA
*
7449046 AAAATAAAAA-ATATAATAT
1 AAAATAAAAATAAATAAT-T
* *
7449065 AATAATAATGAATAAA-AATG
1 AA-AATAA-AAATAAATAATT
*
7449085 AAAATAATAAATATATAA--
1 AAAATAA-AAATAAATAATT
* * *
7449103 AAAATAAATAGAAATATACAT
1 AAAATAAAAATAAATA-A-TT
* *
7449124 AAGATATAAAAGAAATAATT
1 AAAATA-AAAATAAATAATT
7449144 AAAATAAAAATAAATAA
1 AAAATAAAAATAAATAA
7449161 ATATATACAC
Statistics
Matches: 74, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
17 6 0.08
18 8 0.11
19 23 0.31
20 15 0.20
21 11 0.15
22 11 0.15
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (19 bp):
AAAATAAAAATAAATAATT
Found at i:7450432 original size:14 final size:14
Alignment explanation
Indices: 7450413--7450461 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
7450403 GCAATAATGT
7450413 ATATTATAAAAATA
1 ATATTATAAAAATA
*
7450427 ATATTAATCAAAAGTA
1 ATATT-AT-AAAAATA
7450443 A-ATTATAAAAATA
1 ATATTATAAAAATA
7450456 ATATTA
1 ATATTA
7450462 ATCAAAAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 5 0.17
16 7 0.23
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
ATATTATAAAAATA
Found at i:7450447 original size:15 final size:16
Alignment explanation
Indices: 7450420--7450469 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
7450410 TGTATATTAT
*
7450420 AAAAATAATATTAATC
1 AAAAGTAATATTAATC
7450436 AAAAGTAA-ATT-AT-
1 AAAAGTAATATTAATC
*
7450449 AAAAATAATATTAATC
1 AAAAGTAATATTAATC
7450465 AAAAG
1 AAAAG
7450470 GGACGAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 7 0.25
14 5 0.18
15 5 0.18
16 11 0.39
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (16 bp):
AAAAGTAATATTAATC
Found at i:7457591 original size:24 final size:24
Alignment explanation
Indices: 7457543--7457608 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
7457533 CTATGTGGTC
* *
7457543 CTTCGGGAC-ATTTCTATGTGACA
1 CTTCGGTACAATTTCTACGTGACA
* *
7457566 CTTCGGTGCAATTTCTACGTGGCA
1 CTTCGGTACAATTTCTACGTGACA
* *
7457590 CTTTGGTACAATTTATACG
1 CTTCGGTACAATTTCTACG
7457609 AGCTGTGGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
23 7 0.20
24 28 0.80
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
CTTCGGTACAATTTCTACGTGACA
Found at i:7459554 original size:13 final size:14
Alignment explanation
Indices: 7459536--7459570 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
7459526 AACCCAACAC
7459536 AACAACAACGA-CA
1 AACAACAACGAGCA
7459549 AACAACAACGAGCA
1 AACAACAACGAGCA
*
7459563 ACCAACAA
1 AACAACAA
7459571 AAATGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.60, C:0.31, G:0.09, T:0.00
Consensus pattern (14 bp):
AACAACAACGAGCA
Found at i:7461196 original size:19 final size:19
Alignment explanation
Indices: 7461172--7461223 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
7461162 AACAGCCTGA
*
7461172 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATAGTAT
*
7461191 GTGCATCGATGCATATTAT
1 GTGCATCGATGCATAGTAT
7461210 GTGCATCGATGCAT
1 GTGCATCGATGCAT
7461224 CAAATGCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (19 bp):
GTGCATCGATGCATAGTAT
Found at i:7461198 original size:83 final size:83
Alignment explanation
Indices: 7461108--7461288 Score: 217
Period size: 83 Copynumber: 2.2 Consensus size: 83
7461098 TGGACCCTTA
* * * *
7461108 GTGCATCGGTGCACTAAGA-GTGCATCGATGCATGAAGTGCATTCGATG-TTTCA-AAACAGCCT
1 GTGCATCGATGCA-TAAGATGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CCC
7461170 GAGTGCATCGATGCATGGTAT
63 GAGTGCATCGATGCATGGTAT
** *
7461191 GTGCATCGATGCATATTATGTGCATCGATGCATCAAATGCATTTGATGTTTTCATTAAAACCCGA
1 GTGCATCGATGCATAAGATGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-TAAAACCCGA
*
7461256 GTGCATCGATGCATGG-AGA
65 GTGCATCGATGCATGGTA-T
7461275 GTGCATCGATGCAT
1 GTGCATCGATGCAT
7461289 GAACTGCATT
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
82 3 0.04
83 39 0.46
84 39 0.46
85 1 0.01
86 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (83 bp):
GTGCATCGATGCATAAGATGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCGAG
TGCATCGATGCATGGTAT
Found at i:7461281 original size:84 final size:83
Alignment explanation
Indices: 7461127--7461288 Score: 222
Period size: 84 Copynumber: 1.9 Consensus size: 83
7461117 TGCACTAAGA
* * * *
7461127 GTGCATCGATGCATGAAGTGCATTCGATGTTTCAAAACAGCCTGAGTGCATCGATGCATGGTATG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAACAGCCCGAGTGCATCGATGCATGGTAAG
7461192 TGCATCGATGCATATTAT
66 TGCATCGATGCATATTAT
*
7461210 GTGCATCGATGCATCAAATGCATTTGATGTTTTCATTAAA-A-CCCGAGTGCATCGATGCATGG-
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA--AAACAGCCCGAGTGCATCGATGCATGGT
7461272 AGAGTGCATCGATGCAT
63 A-AGTGCATCGATGCAT
7461289 GAACTGCATT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
83 27 0.39
84 39 0.56
85 1 0.01
86 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (83 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAACAGCCCGAGTGCATCGATGCATGGTAAG
TGCATCGATGCATATTAT
Found at i:7464528 original size:21 final size:22
Alignment explanation
Indices: 7464473--7464549 Score: 84
Period size: 23 Copynumber: 3.5 Consensus size: 22
7464463 CATGGCCTTG
7464473 TGCATCGATGCACATTCAAGGC
1 TGCATCGATGCACATTCAAGGC
* * *
7464495 TTGCATCGGTGCACCTTCATGG-
1 -TGCATCGATGCACATTCAAGGC
* * *
7464517 TGTATCGATGCATATTCAAGGA
1 TGCATCGATGCACATTCAAGGC
7464539 TGCATCGATGC
1 TGCATCGATGC
7464550 TTTAAGCAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 16 0.36
22 10 0.23
23 18 0.41
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGC
Found at i:7474244 original size:268 final size:266
Alignment explanation
Indices: 7473769--7474300 Score: 1030
Period size: 268 Copynumber: 2.0 Consensus size: 266
7473759 ATTGAAGTAG
7473769 GAGGCACGTCAATTGGTCTGGATTCTTCCATGGAGAATGAAACCGGAAGGGAGCCATCTTTATCG
1 GAGGCACGTCAATTGGTCTGGATTCTTCCATGGAGAATGAAACCGGAAGGGAGCCATCTTTATCG
7473834 ATTTAACTCTTCCCGGATCGACTCAAGAGGCGATTAAACCTTCAATGAGTTAGGCTCTGATACCA
66 ATTTAACTCTTCCCGGATCGACTCAAGAGGCGATTAAACCTTCAATGAGTTAGGCTCTGATACCA
7473899 ATTGTTGAGTTAATCGATTGACGGATTTGGCCAAGAGGGGGGGTGAATTGGCAATTAAAAATTTG
131 ATTGTTGAGTTAATCGATTGACGGATTTGGCCAAGAGGGGGGGTGAATTGGCAATTAAAAATTTG
7473964 ATGGAAGCTTTTGCAGAAAATTGAAAGTAATTGCACATCGATTTAGAGTGGTTCGACTTTCTCAA
196 ATGGAAGCTTTTGCAGAAAATTGAAAGTAATTGCACATCGATTTAGAGTGGTTCGACTTTCTCAA
7474029 TCAAGT
261 TCAAGT
7474035 GAGGCACGTCAATTGGTCTGGATTCTTCCATGGAGAATG-AACCGGAAGTGGACGCCATCTTTAT
1 GAGGCACGTCAATTGGTCTGGATTCTTCCATGGAGAATGAAACCGGAAG-GGA-GCCATCTTTAT
7474099 CGATTTAACTCTTCCCGGATCGACTCAAGAGGCGATTAAACCTTCAAATGAGTTAGGCTCTGATA
64 CGATTTAACTCTTCCCGGATCGACTCAAGAGGCGATTAAACCTTC-AATGAGTTAGGCTCTGATA
7474164 CCAATTGTTGAGTTAATCGATTGACGGATTTGGCCAAGAGGGGGGGTGAATTGGCAATTAAAAAT
128 CCAATTGTTGAGTTAATCGATTGACGGATTTGGCCAAGAGGGGGGGTGAATTGGCAATTAAAAAT
7474229 TTGATGGAAGCTTTTGCAGAAAATTGAAAGTAATTGCACATCGATTTAGAGTGGTTCGACTTTCT
193 TTGATGGAAGCTTTTGCAGAAAATTGAAAGTAATTGCACATCGATTTAGAGTGGTTCGACTTTCT
7474294 CAATCAA
258 CAATCAA
7474301 AGTCTACGTC
Statistics
Matches: 263, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
265 9 0.03
266 42 0.16
267 56 0.21
268 156 0.59
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (266 bp):
GAGGCACGTCAATTGGTCTGGATTCTTCCATGGAGAATGAAACCGGAAGGGAGCCATCTTTATCG
ATTTAACTCTTCCCGGATCGACTCAAGAGGCGATTAAACCTTCAATGAGTTAGGCTCTGATACCA
ATTGTTGAGTTAATCGATTGACGGATTTGGCCAAGAGGGGGGGTGAATTGGCAATTAAAAATTTG
ATGGAAGCTTTTGCAGAAAATTGAAAGTAATTGCACATCGATTTAGAGTGGTTCGACTTTCTCAA
TCAAGT
Found at i:7478144 original size:12 final size:12
Alignment explanation
Indices: 7478127--7478183 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
7478117 GATATCATAT
7478127 ATCAGAACA-AA
1 ATCAGAACAGAA
*
7478138 ATCCAGATCAGAA
1 AT-CAGAACAGAA
7478151 ATCAGAACAG-A
1 ATCAGAACAGAA
**
7478162 ATTTGAATCAGAA
1 ATCAGAA-CAGAA
7478175 ATCAGAACA
1 ATCAGAACA
7478184 TATTCCAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
11 8 0.22
12 18 0.50
13 10 0.28
ACGTcount: A:0.53, C:0.18, G:0.14, T:0.16
Consensus pattern (12 bp):
ATCAGAACAGAA
Found at i:7478154 original size:24 final size:24
Alignment explanation
Indices: 7478113--7478183 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
7478103 CAGAATTTAT
* *
7478113 ATCAGATATCATATATCAGAACAAA
1 ATCAGA-ATCAGAAATCAGAACAAA
*
7478138 ATCCAG-ATCAGAAATCAGAACAGA
1 AT-CAGAATCAGAAATCAGAACAAA
**
7478162 ATTTGAATCAGAAATCAGAACA
1 ATCAGAATCAGAAATCAGAACA
7478184 TATTCCAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.03
24 33 0.85
25 2 0.05
26 3 0.08
ACGTcount: A:0.51, C:0.17, G:0.13, T:0.20
Consensus pattern (24 bp):
ATCAGAATCAGAAATCAGAACAAA
Found at i:7478194 original size:24 final size:24
Alignment explanation
Indices: 7478127--7478204 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
7478117 GATATCATAT
* *
7478127 ATCAGAACAAAATCCAGATCAGAA
1 ATCAGAACAAATTCCAAATCAGAA
**
7478151 ATCAGAACAGAATT-TGAATCAGAA
1 ATCAGAACA-AATTCCAAATCAGAA
* *
7478175 ATCAGAACATATTCCAAATCAAAA
1 ATCAGAACAAATTCCAAATCAGAA
*
7478199 ACCAGA
1 ATCAGA
7478205 TAAAATATTC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 3 0.07
24 37 0.86
25 3 0.07
ACGTcount: A:0.53, C:0.19, G:0.12, T:0.17
Consensus pattern (24 bp):
ATCAGAACAAATTCCAAATCAGAA
Found at i:7479235 original size:17 final size:18
Alignment explanation
Indices: 7479213--7479256 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
7479203 TGATATTCTT
7479213 GGGTCATTTTCATTAC-A
1 GGGTCATTTTCATTACAA
7479230 GGGTCATTTTCATTACAA
1 GGGTCATTTTCATTACAA
7479248 GGGT-ATTTT
1 GGGTCATTTT
7479257 GGTCATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (18 bp):
GGGTCATTTTCATTACAA
Found at i:7479327 original size:18 final size:18
Alignment explanation
Indices: 7479304--7479338 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7479294 TTCCATCCGG
*
7479304 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
7479322 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
7479339 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:7480674 original size:13 final size:13
Alignment explanation
Indices: 7480653--7480693 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
7480643 TGGTCAACGA
* *
7480653 TCAATGGGTCAGG
1 TCAACGGGTCGGG
7480666 TCAACGGGTCGGG
1 TCAACGGGTCGGG
*
7480679 TCAACAGGTCGGG
1 TCAACGGGTCGGG
7480692 TC
1 TC
7480694 GAGTCAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.39, T:0.20
Consensus pattern (13 bp):
TCAACGGGTCGGG
Found at i:7483546 original size:65 final size:64
Alignment explanation
Indices: 7483422--7483547 Score: 166
Period size: 64 Copynumber: 2.0 Consensus size: 64
7483412 TGCACTAAGA
* * *
7483422 GTGCATCGATGCATGAAGTGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCCGAGTGCATCGATGCATGGTAT
* *
7483486 GTGCATCGATGCGTCAAATGCATTCGATATTTTCATTAAA-A-CCCGAGTGCATCGATGCATGG
1 GTGCATCGATGCATCAAATGCATTCGAT-GTTTCA--AAATAGCCCGAGTGCATCGATGCATGG
7483548 AGAGTGTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
64 25 0.46
65 25 0.46
66 1 0.02
67 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCCGAGTGCATCGATGCATGGTAT
Found at i:7489461 original size:42 final size:42
Alignment explanation
Indices: 7489380--7489461 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
7489370 CTTGGAATGT
* **
7489380 TGGGGCATGCTGAAGGCCCATTTCAGTCAGGAATAATCCATG
1 TGGGGCATGCTGAAGGCCCATTTCAGACAAAAATAATCCATG
* *
7489422 TGGGGCATGCTGAAGGCCCATTTTAGACAAAAATGATCCA
1 TGGGGCATGCTGAAGGCCCATTTCAGACAAAAATAATCCA
7489462 AGTAGGATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (42 bp):
TGGGGCATGCTGAAGGCCCATTTCAGACAAAAATAATCCATG
Found at i:7490284 original size:22 final size:22
Alignment explanation
Indices: 7490251--7490299 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
7490241 ATGTTGTAAG
7490251 GATGATAGATTCTCTTTTCAAA
1 GATGATAGATTCTCTTTTCAAA
7490273 GATGAT-GAATTCTCTTTTCAAA
1 GATGATAG-ATTCTCTTTTCAAA
7490295 GATGA
1 GATGA
7490300 GAGCTTTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (22 bp):
GATGATAGATTCTCTTTTCAAA
Done.