Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7920512
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 39
Found at i:1771400 original size:19 final size:20
Alignment explanation
Indices: 1771344--1771405 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
1771334 CTGTTTGGAG
1771344 TGAAACTATCTCAAGCGAGA
1 TGAAACTATCTCAAGCGAGA
* * * **
1771364 TGAAATTTTTTC-TTCGAG-
1 TGAAACTATCTCAAGCGAGA
1771382 TGAAACTATCTCAAGCGAGA
1 TGAAACTATCTCAAGCGAGA
1771402 TGAA
1 TGAA
1771406 TCTTGTTTTA
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
18 9 0.30
19 8 0.27
20 13 0.43
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (20 bp):
TGAAACTATCTCAAGCGAGA
Found at i:1771991 original size:39 final size:36
Alignment explanation
Indices: 1771948--1772049 Score: 107
Period size: 39 Copynumber: 2.8 Consensus size: 36
1771938 GAGACGGAAT
*
1771948 TTGTTTTAAGAAAAACAATCTCAAGTGAGAT-AATTTTTC
1 TTGTTTTAAGAAAAACAATCTCAAGTGAGATGAA----AC
* ** * *
1771987 TTGTTTTGAGTGAAACTATCTCAAGCGAGATGAAAC
1 TTGTTTTAAGAAAAACAATCTCAAGTGAGATGAAAC
1772023 TTGTTTTAAGAAAAACAATCTCAAGTG
1 TTGTTTTAAGAAAAACAATCTCAAGTG
1772050 TTATAAAATT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
36 23 0.45
39 26 0.51
40 2 0.04
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (36 bp):
TTGTTTTAAGAAAAACAATCTCAAGTGAGATGAAAC
Found at i:1772056 original size:133 final size:132
Alignment explanation
Indices: 1771814--1772075 Score: 443
Period size: 133 Copynumber: 2.0 Consensus size: 132
1771804 AAGCGAGAAG
*
1771814 ATTTTTTTAAGAAAAACAATCTCAAGTGATATAACATTTCTTGTTTCAAGTGAAACTATCTCAAG
1 ATTTTTTTAAGAAAAACAATCTCAAGTGAGATAACATTTCTTGTTTCAAGTGAAACTATCTCAAG
*
1771879 CGAGATGAAACTTGTTTTAAGAAAAGCAATCTCAAGTGAGATAAAATTTTGTATTAAATGAGACG
66 CGAGATGAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTTGTATTAAATGAGACG
1771944 GA
131 GA
** **
1771946 ATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAATTTTTCTTGTTTTGAGTGAAACTATCTCAA
1 ATTT-TTTTAAGAAAAACAATCTCAAGTGAGATAACATTTCTTGTTTCAAGTGAAACTATCTCAA
**
1772011 GCGAGATGAAACTTGTTTTAAGAAAAACAATCTCAAGTGTTATAAAATTTTGTATTAAATGAGAC
65 GCGAGATGAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTTGTATTAAATGAGAC
1772076 TGTCTCAAGC
Statistics
Matches: 121, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
132 4 0.03
133 117 0.97
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (132 bp):
ATTTTTTTAAGAAAAACAATCTCAAGTGAGATAACATTTCTTGTTTCAAGTGAAACTATCTCAAG
CGAGATGAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTTGTATTAAATGAGACG
GA
Found at i:1772771 original size:26 final size:26
Alignment explanation
Indices: 1772737--1772797 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
1772727 AAAGAATCAA
*
1772737 TAGCACTTTTAATATTTTCAAAGTTC
1 TAGCTCTTTTAATATTTTCAAAGTTC
1772763 TAGCTCTTTTAATATTTTCAAAGTTC
1 TAGCTCTTTTAATATTTTCAAAGTTC
1772789 TAGCTCTTT
1 TAGCTCTTT
1772798 GACAAGTGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.08, T:0.49
Consensus pattern (26 bp):
TAGCTCTTTTAATATTTTCAAAGTTC
Found at i:1782932 original size:29 final size:30
Alignment explanation
Indices: 1782899--1782959 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
1782889 TGAGAAAGGA
1782899 TATGAACTATATGAGAACATG-TATATGAT
1 TATGAACTATATGAGAACATGTTATATGAT
** * * *
1782928 TATGAGTTATATGATAAGATGTTATGTGAT
1 TATGAACTATATGAGAACATGTTATATGAT
1782958 TA
1 TA
1782960 AATGATCAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.39
Consensus pattern (30 bp):
TATGAACTATATGAGAACATGTTATATGAT
Found at i:1783254 original size:18 final size:18
Alignment explanation
Indices: 1783231--1783267 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1783221 GTTCTTAAGG
*
1783231 AGTGGTCCTTTGGGACAA
1 AGTGGTCATTTGGGACAA
1783249 AGTGGTCATTTGGGACAA
1 AGTGGTCATTTGGGACAA
1783267 A
1 A
1783268 TTCTAAGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (18 bp):
AGTGGTCATTTGGGACAA
Found at i:1787092 original size:57 final size:57
Alignment explanation
Indices: 1786914--1787400 Score: 751
Period size: 57 Copynumber: 8.5 Consensus size: 57
1786904 GTCCAATACA
* * ** ** * *
1786914 GAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGCACACGAAGTGCCCTTTCAG
1 GAAATTCATACACTTAGTATG-ATTTCTTAACATTTTAGCGTACGAAACGCCCTATC-T
* * *
1786973 GAAATTCATACACTTAGTATAATTTCCTTATCATTTTAGCATACGAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTT-CTTAACATTTTAGCGTACGAAACGCCCTATCT
* * *
1787031 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGTGTACGAAACACCCAATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
1787088 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
*
1787145 GAAATTCATACACTTAGTATGATTTATTAACATTTTAGCGTACGAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* *
1787202 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGTGTACAAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* *
1787259 AAAATTCATACACTTAGTATGATTTCTTAACATTTTAGC-TACGAAACACCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
*
1787315 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAATGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
*
1787372 GAAATTCATACACTTAGTATTATTTCTTA
1 GAAATTCATACACTTAGTATGATTTCTTA
1787401 TATTTTGCTC
Statistics
Matches: 398, Mismatches: 28, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
56 53 0.13
57 271 0.68
58 28 0.07
59 46 0.12
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (57 bp):
GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
Found at i:1790125 original size:2 final size:2
Alignment explanation
Indices: 1790118--1790142 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1790108 CCATAAAAGC
1790118 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1790143 TTCTGACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1792581 original size:57 final size:57
Alignment explanation
Indices: 1792419--1792905 Score: 695
Period size: 57 Copynumber: 8.5 Consensus size: 57
1792409 TCCAATATAG
* * * ** * ** * *
1792419 AAATTCATACACTTAGTATGAGTTTCTTATCATGTTATCACATGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGA-TTTCTTAACATTTTAGCGTACGAAACGCCCTATCT-A
* * *
1792478 AAATTCATACAGTTAATATGATTTTCTTATCATTTTAGCGTACGAAACGCCCTATCTA
1 AAATTCATACACTTAGTATGA-TTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
* * *
1792536 AAATTCATACACTTAATATGATTTCTTAACATTTTAGTGTACGAAACGCTCTATCTA
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
* * *
1792593 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGTGTACGAAACACCCTATCTG
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
* *
1792650 AAATTCATACACTTAGTATGATTTCTTAACATTTTAACGTACGAAACGCCCTATCTG
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
*
1792707 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCTTACGAAACGCCCTATCTA
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
* *
1792764 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCATACGAAACGCCCTATCTG
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
* * * *
1792821 AATTTCATACACTTAGTATGATTTCTTACCATTTTAGAGTACGAAATGCCCTATCTA
1 AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
1792878 AAATTCATACACTTAGTATGATTTCTTA
1 AAATTCATACACTTAGTATGATTTCTTA
1792906 TATTTTGCAC
Statistics
Matches: 393, Mismatches: 35, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
57 327 0.83
58 20 0.05
59 46 0.12
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (57 bp):
AAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTA
Found at i:1793289 original size:22 final size:20
Alignment explanation
Indices: 1793244--1793302 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 20
1793234 CTGGTCCTTA
*
1793244 GGTATCGATACCCCTTCTAT
1 GGTATCGATACCCCTTCTAG
1793264 GGTATCGATACTACCCTAT-TAG
1 GGTATCGATAC--CCCT-TCTAG
*
1793286 GGTATCCATACCTCCTT
1 GGTATCGATACC-CCTT
1793303 AATGTATCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 13 0.39
21 3 0.09
22 16 0.48
23 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (20 bp):
GGTATCGATACCCCTTCTAG
Found at i:1793387 original size:18 final size:21
Alignment explanation
Indices: 1793338--1793391 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
1793328 TTGTATAGCC
1793338 TGGTATCGATACCCCTATGCTA
1 TGGTATCGATACCCC-ATGCTA
*
1793360 TGGTACCGATACCCC-T-CTA
1 TGGTATCGATACCCCATGCTA
1793379 -GGTATCGATACCC
1 TGGTATCGATACCC
1793392 AATTTAGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 12 0.40
19 3 0.10
20 1 0.03
22 14 0.47
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (21 bp):
TGGTATCGATACCCCATGCTA
Found at i:1796994 original size:15 final size:15
Alignment explanation
Indices: 1796974--1797016 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
1796964 TTAATTTTAT
* *
1796974 TTATATATGAATGTG
1 TTATATGTGAATATG
1796989 TTATATGTGAATATG
1 TTATATGTGAATATG
*
1797004 TTCTATGTGAATA
1 TTATATGTGAATA
1797017 AAAGATACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.47
Consensus pattern (15 bp):
TTATATGTGAATATG
Found at i:1797145 original size:23 final size:23
Alignment explanation
Indices: 1797119--1797197 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
1797109 GGTTCTACGC
* *
1797119 GGTCATTCAGGACAATTCTATGT
1 GGTCCTTCGGGACAATTCTATGT
* *
1797142 GGTCCTTCGGGATAATTCTACGT
1 GGTCCTTCGGGACAATTCTATGT
* *
1797165 GATCCTTCGGGACAAATCTATGT
1 GGTCCTTCGGGACAATTCTATGT
1797188 GG-CACTTCGG
1 GGTC-CTTCGG
1797198 TGCATATTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
22 1 0.02
23 45 0.98
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (23 bp):
GGTCCTTCGGGACAATTCTATGT
Found at i:1797213 original size:24 final size:24
Alignment explanation
Indices: 1797155--1797236 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
1797145 CCTTCGGGAT
*
1797155 AATTCTACGTGATC-CTTCGG-GACA
1 AATTCTACGTG-GCACTTCGGTG-CA
*
1797179 AA-TCTATGTGGCACTTCGGTGCA
1 AATTCTACGTGGCACTTCGGTGCA
* *
1797202 TATTCTACGTGGCACTTTGGTGCA
1 AATTCTACGTGGCACTTCGGTGCA
1797226 AATTCTACGTG
1 AATTCTACGTG
1797237 ATAGTTTTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 1 0.02
23 16 0.33
24 32 0.65
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (24 bp):
AATTCTACGTGGCACTTCGGTGCA
Found at i:1800189 original size:95 final size:96
Alignment explanation
Indices: 1800085--1800277 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 96
1800075 TACCTAATGA
* *
1800085 AGTGGTATCGATACC-ATGGTGAGGGTATCGATACCT-GG-TAACATCAAACCTAATTTTGGTAT
1 AGTGGTATCGATACCTATGATAAGGGTATCGATA-CTGGGCT-ACATCAAACCTAATTTTGGTAT
*
1800147 CGATACCATATA-GGGGTATCAGTACCATAGTAT
64 CGATACCAGA-AGGGGGTATCAGTACCATAGTAT
* * *
1800180 AGTGGTATCGATACCTATGATAAGGGTATCGATATTGGGCTACATCGAACCTATTTTTGGTATCG
1 AGTGGTATCGATACCTATGATAAGGGTATCGATACTGGGCTACATCAAACCTAATTTTGGTATCG
* *
1800245 ATACCCGAAGGGGGTATCGGTACCATAGTAT
66 ATACCAGAAGGGGGTATCAGTACCATAGTAT
1800276 AG
1 AG
1800278 AAGTATCGGT
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
95 17 0.20
96 68 0.79
97 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (96 bp):
AGTGGTATCGATACCTATGATAAGGGTATCGATACTGGGCTACATCAAACCTAATTTTGGTATCG
ATACCAGAAGGGGGTATCAGTACCATAGTAT
Found at i:1800194 original size:22 final size:19
Alignment explanation
Indices: 1800141--1800213 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 19
1800131 AACCTAATTT
1800141 TGGTATCGATACCATATAG
1 TGGTATCGATACCATATAG
*
1800160 GGGTATC-AGTACCATAGTATAG
1 TGGTATCGA-TACC--A-TATAG
1800182 TGGTATCGATACCTATGATAAG
1 TGGTATCGATACC-AT-AT-AG
1800204 -GGTATCGATA
1 TGGTATCGATA
1800214 TTGGGCTACA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
18 1 0.02
19 10 0.22
20 1 0.02
21 15 0.33
22 17 0.38
23 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (19 bp):
TGGTATCGATACCATATAG
Found at i:1800810 original size:26 final size:26
Alignment explanation
Indices: 1800780--1800853 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
1800770 CAACAGAAAA
1800780 GTATACTATAGTTGAAATGTATATGG
1 GTATACTATAGTTGAAATGTATATGG
* *
1800806 GTATA-T-TA--TCAACA-GTA-A--A
1 GTATACTATAGTTGAA-ATGTATATGG
1800825 GTATACTATAGTTGAAATGTATATGG
1 GTATACTATAGTTGAAATGTATATGG
1800851 GTA
1 GTA
1800854 CATTACCAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 18
0.61 0.07 0.32
Matches are distributed among these distances:
19 5 0.14
20 1 0.03
21 3 0.09
22 7 0.20
23 7 0.20
24 3 0.09
25 1 0.03
26 8 0.23
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.36
Consensus pattern (26 bp):
GTATACTATAGTTGAAATGTATATGG
Found at i:1801139 original size:45 final size:45
Alignment explanation
Indices: 1800742--1801140 Score: 575
Period size: 45 Copynumber: 8.9 Consensus size: 45
1800732 AAAGGATGCC
*
1800742 ATAGTTGAAATGTATATGGGTATATTATCAACAGAAAAGTATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* *
1800787 ATAGTTGAAATGTATATGGGTATATTATCAACAGTAAAGTATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
*
1800832 ATAGTTGAAATGTATATGGGTACATTACCAACAGAATAA-TATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAA-AAGTATACT
1800877 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* * *
1800922 ATGGTTGAAATGTATATGGGTACATTATCAACATAAAAGTATGCT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* ** * *
1800967 ATAGTTGAAATGCATATGGGTGTATTATCAACAGAAATGTATGCT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* * * **
1801012 AGAGTTGAAATGTATATGAGTACATTATCAAAAGAATGGTATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* * * *
1801057 ATGGTTGAAATGTATAAGGGTACATTATCAATAGAAAAGTATATT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* *
1801102 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAG
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAG
1801141 ATGTTATAAT
Statistics
Matches: 316, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
44 2 0.01
45 312 0.99
46 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (45 bp):
ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
Found at i:1807122 original size:15 final size:15
Alignment explanation
Indices: 1807094--1807147 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
1807084 ATTTTATTTG
*
1807094 TATGTGAATGTGTTA
1 TATGTGAATATGTTA
* *
1807109 TATATGAATATGTTC
1 TATGTGAATATGTTA
* *
1807124 TACGTGAAAATGTTA
1 TATGTGAATATGTTA
1807139 TATGTGAAT
1 TATGTGAAT
1807148 GTAGTCTATG
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (15 bp):
TATGTGAATATGTTA
Found at i:1807161 original size:30 final size:30
Alignment explanation
Indices: 1807094--1807161 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
1807084 ATTTTATTTG
**
1807094 TATGTGAATGTGTTATATATGAATATGTTC
1 TATGTGAAAATGTTATATATGAATATGTTC
* * *
1807124 TACGTGAAAATGTTATATGTGAATGTAG-TC
1 TATGTGAAAATGTTATATATGAATAT-GTTC
1807154 TATGTGAA
1 TATGTGAA
1807162 TCAAAGATAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.22, T:0.41
Consensus pattern (30 bp):
TATGTGAAAATGTTATATATGAATATGTTC
Found at i:1807293 original size:23 final size:23
Alignment explanation
Indices: 1807266--1807340 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 23
1807256 GAGTCAAGGG
* *
1807266 TTCTACACGATCCTTCAAGACAA
1 TTCTACACGGTCCTTCAGGACAA
*** * *
1807289 TTCTATGTGGTCCTTCGGGATAA
1 TTCTACACGGTCCTTCAGGACAA
1807312 TTCTACACGGTCCTTCAGGACAA
1 TTCTACACGGTCCTTCAGGACAA
*
1807335 ATCTAC
1 TTCTAC
1807341 GTAGCACTTC
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (23 bp):
TTCTACACGGTCCTTCAGGACAA
Found at i:1807363 original size:24 final size:24
Alignment explanation
Indices: 1807324--1807389 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
1807314 CTACACGGTC
1807324 CTTCAG-GACAAA-TCTACGTAGCA
1 CTTCAGTG-CAAATTCTACGTAGCA
* * *
1807347 CTTCGGTGCATATTCTACGTGGCA
1 CTTCAGTGCAAATTCTACGTAGCA
1807371 CTTCAGTGCAAATTCTACG
1 CTTCAGTGCAAATTCTACG
1807390 CGGCAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 8 0.22
24 28 0.78
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (24 bp):
CTTCAGTGCAAATTCTACGTAGCA
Found at i:1807394 original size:24 final size:24
Alignment explanation
Indices: 1807310--1807394 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 24
1807300 CCTTCGGGAT
*
1807310 AATTCTACACGGTC-CTTCAG-GACA
1 AATTCTACGCGG-CACTTCAGTG-CA
** *
1807334 AA-TCTACGTAGCACTTCGGTGCA
1 AATTCTACGCGGCACTTCAGTGCA
* *
1807357 TATTCTACGTGGCACTTCAGTGCA
1 AATTCTACGCGGCACTTCAGTGCA
1807381 AATTCTACGCGGCA
1 AATTCTACGCGGCA
1807395 ATTTCGACTG
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.02
23 14 0.29
24 34 0.69
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (24 bp):
AATTCTACGCGGCACTTCAGTGCA
Found at i:1821246 original size:16 final size:17
Alignment explanation
Indices: 1821201--1821247 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 17
1821191 GCTCCCAAGG
1821201 AGAAGATGAAGAGGAGAAA
1 AGAAGATG-AGA-GAGAAA
1821220 AGAAG-TG-GAGAAGAAA
1 AGAAGATGAGAG-AGAAA
1821236 AGAAGATGAGAG
1 AGAAGATGAGAG
1821248 CCCGCCCTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 12 0.48
17 2 0.08
18 5 0.20
19 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.06
Consensus pattern (17 bp):
AGAAGATGAGAGAGAAA
Found at i:1822577 original size:19 final size:19
Alignment explanation
Indices: 1822553--1822624 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
1822543 TTGTTATTTT
1822553 TAACAAGTTTCGATCCTCA
1 TAACAAGTTTCGATCCTCA
*
1822572 TAACAAGTCTT-GATTCTCA
1 TAACAAGT-TTCGATCCTCA
* * *
1822591 TAACAAGTTTTGATCTTCG
1 TAACAAGTTTCGATCCTCA
*
1822610 TATCAAAGTTTCGAT
1 TAAC-AAGTTTCGAT
1822625 AATTTGTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 2 0.05
19 31 0.70
20 11 0.25
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (19 bp):
TAACAAGTTTCGATCCTCA
Found at i:1822794 original size:53 final size:54
Alignment explanation
Indices: 1822709--1822883 Score: 244
Period size: 54 Copynumber: 3.3 Consensus size: 54
1822699 TAACGTTATA
* *
1822709 GGTTGTGCCTTGTTATTTTTAACTAGTTACCTTATAAGTAGGAGTAACATTTAC
1 GGTTGCGCCTTGTTATTTTTAACTAGTTACCTTATAAGTAGGAGTAACATTAAC
* * * *
1822763 GGTTGCGCCTTGGT-TTTTTAACTGGTAACCTTATAAGTAGGAGTATCATTAAC
1 GGTTGCGCCTTGTTATTTTTAACTAGTTACCTTATAAGTAGGAGTAACATTAAC
* * *
1822816 GGTTGCGACTTGTTATTTTTAACCAGTTACCTTATAAGTAGGAGTAACATTACC
1 GGTTGCGCCTTGTTATTTTTAACTAGTTACCTTATAAGTAGGAGTAACATTAAC
* *
1822870 GTTTGTGCCTTGTT
1 GGTTGCGCCTTGTT
1822884 TTGTTTTTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 47 0.45
54 57 0.55
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41
Consensus pattern (54 bp):
GGTTGCGCCTTGTTATTTTTAACTAGTTACCTTATAAGTAGGAGTAACATTAAC
Found at i:1823501 original size:108 final size:108
Alignment explanation
Indices: 1823286--1823863 Score: 663
Period size: 108 Copynumber: 5.4 Consensus size: 108
1823276 TATATTGTAG
** * * * ** * *
1823286 ATATTTATAACATTATAAGTAATTAACTTATTTTGTTACCGTGGGATTGTCCAAGGTCACATCAA
1 ATATTTATAACAAAATAAGTAATTAACTTATTTTATTATCGTGAGATT-TATAAGGTCTCATCAG
* * * * *
1823351 CTTAAATTTTGATAATATTTTAGACGCAACAC-ATTATG-TAATA
65 CTTAAACTTTGGTAACATTTTAGGCGCAAC-CTAATATGTTAATA
* *
1823394 ATATTTATAACAAAATAAGTAAATT-ATTTATTTTATTATCGTGAGATTTTTAAGGTCTCATCAG
1 ATATTTATAACAAAATAAGT-AATTAACTTATTTTATTATCGTGAGATTTATAAGGTCTCATCAG
*
1823458 CTTAAACTTTGGTAACATTTTAGGCGCTACCTAATATGTTAATA
65 CTTAAACTTTGGTAACATTTTAGGCGCAACCTAATATGTTAATA
* *
1823502 ATATTTATAACAAAATAAGTAATTAACTTATATTGA-TATCGTGAGATTTATAATGT-TCAATCA
1 ATATTTATAACAAAATAAGTAATTAACTTAT-TTTATTATCGTGAGATTTATAAGGTCTC-ATCA
* *
1823565 GCTTAAATTTTAGTAACATTTTAGGC-CAACCTAATATGTTAATA
64 GCTTAAACTTTGGTAACATTTTAGGCGCAACCTAATATGTTAATA
* * * *
1823609 ATATTTATAACAAAATAAGTAATTAACCTATTTTATTACCGTGAGATTTCTAAGG-CGCCATCAG
1 ATATTTATAACAAAATAAGTAATTAACTTATTTTATTATCGTGAGATTTATAAGGTC-TCATCAG
* *
1823673 TTTAAACTTTGGTAGA-ATTTTAGACGCAACCTAATATGTTAATA
65 CTTAAACTTTGGTA-ACATTTTAGGCGCAACCTAATATGTTAATA
* *
1823717 ATATTTATAACAAAATAAGTAATTAACCTATTTTATTGTCGTGAGATTTATAAGG-CTCTATCAG
1 ATATTTATAACAAAATAAGTAATTAACTTATTTTATTATCGTGAGATTTATAAGGTCTC-ATCAG
* * ** * * * * *
1823781 CTTATACTCTCTTAACATATTAGGTGTAACCTCATATGTTGATA
65 CTTAAACTTTGGTAACATTTTAGGCGCAACCTAATATGTTAATA
*
1823825 ATATTAATAACAAAATAAGTAATTAACTTATTTT-TTATC
1 ATATTTATAACAAAATAAGTAATTAACTTATTTTATTATC
1823864 ATTTATACGC
Statistics
Matches: 406, Mismatches: 51, Indels: 27
0.84 0.11 0.06
Matches are distributed among these distances:
106 4 0.01
107 141 0.35
108 254 0.63
109 7 0.02
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (108 bp):
ATATTTATAACAAAATAAGTAATTAACTTATTTTATTATCGTGAGATTTATAAGGTCTCATCAGC
TTAAACTTTGGTAACATTTTAGGCGCAACCTAATATGTTAATA
Found at i:1823613 original size:215 final size:212
Alignment explanation
Indices: 1823286--1823863 Score: 657
Period size: 215 Copynumber: 2.7 Consensus size: 212
1823276 TATATTGTAG
** * * * ** * *
1823286 ATATTTATAACATTATAAGTAATTAACTTATTTTGTTACCGTGGGATTGTCCAAGGTCACATCAA
1 ATATTTATAACAAAATAAGTAATTAACTTA-TTTGATATCGTGAGATT-TATAAGCTCA-ATCAG
* * *
1823351 CTTAAATTTTGATAATATTTTAGACGCAACAC-ATTATG-TAATAATATTTATAACAAAATAAGT
63 CTTAAATTTTG-TAACATTTTAGGC-CAAC-CTAATATGTTAATAATATTTATAACAAAATAAGT
* * *
1823414 AAATT-ATTTATTTTATTATCGTGAGATTTTTAAGGTC-TCATCAGCTTAAACTTTGGTA-ACAT
125 -AATTAACTTATTTTATTATCGTGAGATTTCTAAGG-CGCCATCAGCTTAAACTTTGGTAGA-AT
* *
1823476 TTTAGGCGCTACCTAATATGTTAATA
187 TTTAGACGCAACCTAATATGTTAATA
*
1823502 ATATTTATAACAAAATAAGTAATTAACTTATATTGATATCGTGAGATTTATAATGTTCAATCAGC
1 ATATTTATAACAAAATAAGTAATTAACTTAT-TTGATATCGTGAGATTTATAA-GCTCAATCAGC
1823567 TTAAATTTTAGTAACATTTTAGGCCAACCTAATATGTTAATAATATTTATAACAAAATAAGTAAT
64 TTAAATTTT-GTAACATTTTAGGCCAACCTAATATGTTAATAATATTTATAACAAAATAAGTAAT
* * *
1823632 TAACCTATTTTATTACCGTGAGATTTCTAAGGCGCCATCAGTTTAAACTTTGGTAGAATTTTAGA
128 TAACTTATTTTATTATCGTGAGATTTCTAAGGCGCCATCAGCTTAAACTTTGGTAGAATTTTAGA
1823697 CGCAACCTAATATGTTAATA
193 CGCAACCTAATATGTTAATA
* * * *
1823717 ATATTTATAACAAAATAAGTAATTAACCTATTTTATTGTCGTGAGATTTATAAGGCTCTATCAGC
1 ATATTTATAACAAAATAAGTAATTAACTTATTTGA-TATCGTGAGATTTATAA-GCTCAATCAGC
* * * ** * * *
1823782 TTATACTCTCT-TAACATATTAGGTGTAACCTCATATGTTGATAATATTAATAACAAAATAAGTA
64 TTA-AAT-TTTGTAACATTTTAGG-CCAACCTAATATGTTAATAATATTTATAACAAAATAAGTA
1823846 ATTAACTTATTTT-TTATC
126 ATTAACTTATTTTATTATC
1823864 ATTTATACGC
Statistics
Matches: 314, Mismatches: 36, Indels: 25
0.84 0.10 0.07
Matches are distributed among these distances:
213 1 0.00
214 17 0.05
215 198 0.63
216 96 0.31
217 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (212 bp):
ATATTTATAACAAAATAAGTAATTAACTTATTTGATATCGTGAGATTTATAAGCTCAATCAGCTT
AAATTTTGTAACATTTTAGGCCAACCTAATATGTTAATAATATTTATAACAAAATAAGTAATTAA
CTTATTTTATTATCGTGAGATTTCTAAGGCGCCATCAGCTTAAACTTTGGTAGAATTTTAGACGC
AACCTAATATGTTAATA
Found at i:1826886 original size:13 final size:13
Alignment explanation
Indices: 1826868--1826892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1826858 TGGAACAATT
1826868 ATTAATTAAGAAA
1 ATTAATTAAGAAA
1826881 ATTAATTAAGAA
1 ATTAATTAAGAA
1826893 TGAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
ATTAATTAAGAAA
Found at i:1829239 original size:79 final size:79
Alignment explanation
Indices: 1829145--1829304 Score: 311
Period size: 79 Copynumber: 2.0 Consensus size: 79
1829135 AAATGGCATT
1829145 TTGGTCATTTGGAATAAAATGAATTTAAAACTCAAATTTTAATAGGGATTTAAGAAGGGTAAAGT
1 TTGGTCATTTGGAATAAAATGAATTTAAAACTCAAATTTTAATAGGGATTTAAGAAGGGTAAAGT
1829210 TAAAAAGAAAAAGG
66 TAAAAAGAAAAAGG
*
1829224 TTGGTCATTTGGAATAAAATGAATTTAAAACTCAAATTTTAATAGGGATTTTAGAAGGGTAAAGT
1 TTGGTCATTTGGAATAAAATGAATTTAAAACTCAAATTTTAATAGGGATTTAAGAAGGGTAAAGT
1829289 TAAAAAGAAAAAGG
66 TAAAAAGAAAAAGG
1829303 TT
1 TT
1829305 AAGTTATTTC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.31
Consensus pattern (79 bp):
TTGGTCATTTGGAATAAAATGAATTTAAAACTCAAATTTTAATAGGGATTTAAGAAGGGTAAAGT
TAAAAAGAAAAAGG
Found at i:1830924 original size:45 final size:45
Alignment explanation
Indices: 1830855--1831484 Score: 787
Period size: 45 Copynumber: 14.0 Consensus size: 45
1830845 TGCAAGTTAG
* * *
1830855 ATGCCTAACGGTGCATTAACGGCATGAAAGGATTCCATAAATTAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * *
1830900 ATGGATAACGGTGCATTAACGGCATGAATGGATGCCATAAACGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * *
1830945 ATGTATAATGGTGCATTAACGGCATGAAAGGATGTCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* *
1830990 ATGCATAACGGTTCATTAACGGCATGAAAGTATGCCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* *
1831035 ATGCATAACGGTGCATTAACGGCATGAAATGATGACATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
** * * *
1831080 ATGCATAACAATGTATTAACGACATGAAAGGATACCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * *
1831125 ATGAATAACGATGAATTAACGGCATGAAAGGATGCCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
*
1831170 ATGCATAACGGTGCATTAACGACATGAAAGGATGCCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * * * ** *
1831215 ATACATAACAGTGCATTAACGACATGAAATGATATCAAAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * * **
1831260 ATACATAACGGTGCATTAACGACATGAAATGATATCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* *
1831305 ATGCATAACGGTGCATTAACGGCATGAAATGATGCCATAAATAAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * * *
1831350 ATGCATAACGGAGTATT-ACGACATAAAAGGATGCCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * * *
1831394 ATGCATAACGATGTATTATCGGTATGAAAGGATGCCATAAATGAA
1 ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
* * ** * *
1831439 ACGTATAACGGTGCATTATA-AACATGAAATGATGCTATAAATGAA
1 ATGCATAACGGTGCATTA-ACGGCATGAAAGGATGCCATAAATGAA
1831484 A
1 A
1831485 ATAAAGGATA
Statistics
Matches: 512, Mismatches: 71, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
44 38 0.07
45 474 0.93
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.23
Consensus pattern (45 bp):
ATGCATAACGGTGCATTAACGGCATGAAAGGATGCCATAAATGAA
Found at i:1833079 original size:18 final size:18
Alignment explanation
Indices: 1833056--1833112 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 18
1833046 CCAGTAATCA
1833056 TATTCCCTGGTAATCTTT
1 TATTCCCTGGTAATCTTT
1833074 TATTCCCAATGGTAATCTTT
1 TATTCCC--TGGTAATCTTT
*
1833094 TATTTACACTGGTAATCTT
1 TA-TT-CCCTGGTAATCTT
1833113 ACATTCCGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 7 0.21
20 23 0.68
21 2 0.06
22 2 0.06
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (18 bp):
TATTCCCTGGTAATCTTT
Found at i:1833088 original size:20 final size:20
Alignment explanation
Indices: 1833063--1833112 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
1833053 TCATATTCCC
*
1833063 TGGTAATCTTTTATTCCCAA
1 TGGTAATCTTTTATTCACAA
* *
1833083 TGGTAATCTTTTATTTACAC
1 TGGTAATCTTTTATTCACAA
1833103 TGGTAATCTT
1 TGGTAATCTT
1833113 ACATTCCGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (20 bp):
TGGTAATCTTTTATTCACAA
Found at i:1833646 original size:62 final size:62
Alignment explanation
Indices: 1833524--1838041 Score: 2517
Period size: 62 Copynumber: 75.8 Consensus size: 62
1833514 TAGTATTTCC
* * * * *
1833524 AAAAATTTAGTTAAATTTTAAA-TTAAAATCTTCAATTTTCAGTCTTCCCTACCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1833585 AAAATTTTAGTTAAATTTTAAATTTAAAACCATCAATTTTCATTCTTTCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1833647 AAAATTTTAGTTAAATTTAAAATTTAAAATCTTCAATCTTCAATCTTCTCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * *
1833709 AAAATTTTAGTAAAATTTTAAAATTAAAATCTTCAATCTTCTTTCTTACCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * *
1833771 AAAATTTTAGTTAAATTTTAAATCTAAAACCTTCAATTTTCATTCTTCCCTCCTTGGTTTCT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1833833 -AAATTTTAGTTAAATTTTAAATTTTAAATCTTCAATCTTCTTTCTTCCCTCCCTAGCTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1833894 AAAATTTTAGTAAAATTTTAAAATTAAAACCTCCAATGTTCATTCTTCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * * *
1833956 AGAATTTTAGTTCAATTTTAAATTT-AAATCTTAAATCTT-ATTTCTTCCATCCCTACTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCA-TTCTTCCCTCCCTAGTTTTT
* * * * * * * * * *
1834017 TAAATTTTAG-AAAACTTTAAAATTAAAATCTTTAATCTTCTTTCTTACCTGCTTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * * * *
1834078 AAAATTTTACTAAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCATAATTTTC
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** * * *
1834140 AAATTTTTAGTTAAATTTTAAATCTAAAACATTCCCTCTTCTTTCTTCTCTCTCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * ** *
1834202 AATGTTTTTTAAATTTTAGTTAAATTTTAAATCTAAAATCTTCTCTCTT-ATCTATTCCCTCCCT
1 -A--------AAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCT
*
1834266 AGTATTT
56 AGTTTTT
** * * * * * * *
1834273 AAAATAATA-TTGAAATTTTAAAATTAAAATCTTGAATCTTCTTTCTTCCCTACATAATTTTT
1 AAAATTTTAGTT-AAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * * * *
1834335 AAAATTGTACTGAAATTTTAAAATTAAAACCTTCATTTTTCATTCTTCCCGCCCTAG-TTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** * * *
1834396 AAAACTTTTAGTTAAAATTTAAATTTAAAACCTTCTCTCTT-ATCTCTTTCCTCCATAGTTTTA
1 AAAA-TTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* ** * *
1834459 AAAATTTTAGTTAAATTTTAAATCTAAAACCTTCTCTCTT-ATCTCTTTCCTCCCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * *
1834521 AAAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTT-ATTTCTCCCCTCCCTAGTTTCT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCA-TTCTTCCCTCCCTAGTTTTT
* * * *
1834583 AAAATTTTAGTAAAATTTTAGTAAAATTTTAAA-TTTC--TCTT-A-TCTCTCCCTCTCTAGTTT
1 AAAATTTTAGTTAAA-TTT--T-AAATTTAAAACCTTCAATCTTCATTCT-TCCCTCCCTAGTTT
1834643 TT
61 TT
* * * * * * * *
1834645 ACAATTATAGTGAAATTTTAAAATTAAAATCTTCAAT-TT-TTTC-TCCCTCACTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * * * *
1834704 AAAATTTTAGTGAAACTTTAAATTTAAAA-TTTC--TCTATTATCTTTTTCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCT-TCAT-TCTTCCCTCCCTAGTTTTT
* * ** * * * *
1834765 TAAATTTTAGTGAAATAATAAAATTAAAACCTTTAATCTTCTTTCTCCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1834827 AAAATTTTAGTTAAATTTTAAATCTAAAATCTTCAATCTTCTTTCTTCCCTCCCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** * *
1834889 AAAATTTTAGTTAAATTTTAAATCTAAAACCTTCTCTCTT-ATCTCTTTCCTCCCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * *
1834951 AAAATTTCAGTTAAAATTTTAAA-TTAAAACCTTCAATCTTCTTTC-TCCGCTCTCTAGTTTCT
1 AAAATTTTAGTT-AAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCC-CTCCCTAGTTTTT
* * * ** * * *
1835013 AAAATTGTAGTAAAAGTTTAAATTTAAAACCTTCTCTCTT-ATCTCTTTCCTCCATAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* ** * * * *
1835075 AAAATTTTAGTGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTACCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* *
1835137 AAAATTTTAGTTAAATTTTAAATCTAAAATCTAAAATCTTCAATCTTTATTCTTCCCTCCCTAG-
1 AAAATTTTAGTTAAATTTTAAA--T----T-TAAAACCTTCAATCTTCATTCTTCCCTCCCTAGT
*
1835201 TTTA
59 TTTT
* * * * * *
1835205 AAAATTTTAGTTACATTTTAAATCTAAAACTTTC--TCTTTTATCTCTTTCCTCCCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATC-TTCAT-TCTTCCCTCCCTAGTTTTT
* * *
1835267 AAAATTTTAGTTAAATTTTATAA-TTAAAACCTTCAATCTTCTTTCTCCCCTCCCTAGTTTCT
1 AAAATTTTAGTTAAATTTTA-AATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** *
1835329 AAAATTTTAGTAAAAGTTTAAATTTAAAATCTTCTCTCTT-ATCTCTTCCCTCCCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * ** *
1835391 AAAATTTTAATTAAATTTTAAATCTAAAACCTTCTCTCTT-ATCTCTTTCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * * *
1835453 AAAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTATCCCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** * * ** **
1835515 AAAA--TT--TTAAATTTAAAATCTT--CTCTCTT--ATC-TC-TTCCCTCCAT-AGT--TTTAA
1 AAAATTTTAGTTAAATTTTAAAT-TTAAAAC-CTTCAATCTTCATT-CTTCCCTCCCTAGTTTTT
* * * * * * ** * ** * ** **
1835567 AAATTTTAGTTAAATTTTAAATCTAAAATCTT-TAATCTTCTTTCTCCCCTC-ACTAGTGTCTAA
1 AAA-ATT--TT--A-GTTAAATTTTAAAT-TTAAAACCTTCAATCTTCATTCTTC-CCTCCCT--
*
1835630 AATTTTAGT
56 AGTTTT--T
* ** * ** *
1835639 AAAA--TT--TTAAATTTAAAATCTT--CTCTCTT--ATC-TC-TTCCCTCCCT-AGT--TTTTA
1 AAAATTTTAGTTAAATTTTAAAT-TTAAAAC-CTTCAATCTTCATT-CTTCCCTCCCTAGTTTTT
* * * * * *
1835691 AAATTTTAT-TTAAATTTTAAAATT-AAAACCTTCAATCTTC-TTC-TCTCCTCCCTAGTTTCT
1 AAAATTT-TAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTC-CCTCCCTAGTTTTT
* * * * * *
1835751 AAAATTTTAGTAAAAGTTTAACTTTAAAA---TC-TTC-TC--TCTTCCCTCTCTAGTTTTA
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** * *
1835806 AAAATTTTAATTAAATTTTAAATCTAAAACCGTCTCTCTT-ATCTCTTTCCTCTCTAG-TTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * * *
1835867 AAAACTTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCACTAGTTTCT
1 AAAA-TTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
*
1835930 AAAATTTTAGTAAAATTTTAAATCTT------TTC--TCTAATC-TT-TTCCCTCCCTAG--TTT
1 AAAATTTTAGTTAAATTTTAAAT-TTAAAACCTTCAATCT--TCATTCTTCCCTCCCTAGTTTTT
* * *
1835983 AAAGCTTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTC-TTCTTCCCT-CCTAGTTTCT
1 AAA-ATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** *
1836044 AAAATTTTAGTAAAATTTAAAATTTAAAA-TTTCTCTCTT-ATCTCTTCCCTCCCTACTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * * ** * * *
1836105 AAAATTATAGTGAAATTTTAAAATTAAAATCTTCAATCTTTTTTCCTCCCTCACTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** ** * **
1836167 AAAATTTTAGTGAAACTTTAAATTTAAAATCTTCGCTCTTTTTTCTTTCCTTACT-GATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTT
* * * *
1836229 AAAATTTTAGTAATTTTACTAAAATTTTAAAATTAAAACC-TCTAATTTTCATTTTTCCCTCCAT
1 AAAATTTTAG------T--T-AAATTTTAAATTTAAAACCTTC-AATCTTCATTCTTCCCTCCCT
1836293 AG-TTTT
56 AGTTTTT
* * *
1836299 AAAACTTTTAGTTAAATTTCAAATCTAAAACCTTCTCA-CTT-ATCTCTT---TCCCTAGTTTTT
1 AAAA-TTTTAGTTAAATTTTAAATTTAAAACCTTC-AATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * * * * ** * *
1836359 AAAATTTTTGTAAAAATTTAAAATTATAACCTTCCATCTTTTTTCTCCCCTCCTTAGTTTTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG---TTTTT
* * * * **
1836424 TAAATTTTAGTCAAATTTTAAAATTAAAATCTTCTCTCTT-ATCTCTTCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
* * * * * * * * *
1836486 AAAAATATAGTGAAATTTTAAAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** ** * * * *
1836548 AAGATTTTAGCGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCCATAG-TTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1836609 AAAACTTTTAGTTAAATTTTAAATCTAAAATC-TC--TCTT-ATCTCTT---TCCCAAGTTTTT
1 AAAA-TTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTT
** * ** *
1836666 AAAATTTTAGCAAAATTTTAAAATTAAAACCTTCAATCTTTTTTCTTCCCTCCTTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * ** * * * *
1836728 TAAATTTTAGTGAAATTTTAAAATTAAAATATTCAATCCTCTTTCCTCCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** * ** *
1836790 AAAATTTTAGTGAAACATTAAATTTAAAGCCTTCCCT-TTCTTTCTTCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * * * *
1836851 AAAATTTTAGTGAAATTTTAAAATTAAAACCCTCACTCTTCTTTCTTCCCTCCTTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * *
1836913 AAAA-TTTAGTGAAATTTTAAA-AT-AAACCTTTAA--TTCTTTC-TCCACTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCC-CTCCCTAGTTTTT
* * * * ***
1836970 -AAATTTTAGTGAAATTTTAAAATTAAAACTTTC--TCTACTCTTTCTTGATTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCT--TCATTCTTCCCTCCCTAGTTTTT
* ** * * * * * *
1837031 -AAAGTTTAGAAAAAATTTAAA-TTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837091 AAAATTTTAG-CAAA-ATTAAAATTAAAACCTTCAATCTT--TT-TTCCCT-CCTAG-TTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837146 -AAATTTTAG-TAAATTTTAAA--TAAAATCTTC-TTC-T-A-TC-T--CTTCC-AGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* *
1837196 AAAA-TTTAG--CAATTTTAAA-TTAAAA--TTCAATC-TC-TTCCT-CC-CCCTA-TTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837247 TAAATTTTAGTGAAA---TAAA-TTAAAA-CTTC--T-TTCTTTCTTCCCT-CCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* *
1837300 AAAA-TTTAGTGAAA-TTTAAAATTAAAA---T--A---TCATTCTTCCCT-CCTA-TTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837350 -AAA-TTTAGTGAAA--TTAAA-TT-AAACCTT---TTTTCTTTC-TCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * *
1837402 -AAATTTTAG-TGAATTTTAAAATTAAAACC-TC-A-C-TC-TT-TTTCTTCCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837456 AAAATTTTAG--AAATTTTAAAATT-AAACCTTTAATCTTC-TTCTTCCCT-CCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1837513 -AAA-TTTAGTGAAA--TTAAA-TTAAAACTTTC---CCTC-TTCTT--TTCCCTAG-TTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* ** * * * *
1837563 AAAGTTTTAGAAAAATTTT-AA-TT-AAACCTTTACTCTTCTTTC-TCCCT-CCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837620 -AAATTTTAG-TGAA--TTAAA-TTAAAA-CTTC-CTCTTCTTTCTTCCCT-CCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1837674 AAAA-TTTAGTGAAATTTT-AA-TT-AAACC-T---TCTTCTTTC-T-ACT-CCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837725 AAAATTTTAG-TGAA-TTTAAAATTAAAA--TT--A-CTTCTTTC-TCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* *
1837779 AAAA-TTTAG--AAA-TTTAAA-TTAAAACC-TCACTC-TC-TTCTT-CCT-CCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * *
1837831 AAAATTTTAATGAAA-TTTAAA-TTAAAA--TT-AATCTTCTTTC-TCCC-CCCTAATTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837886 AAAATTTTAG--AAA-TTTAAAATT-AAACCTT-TA-C-TC-TTCTT-CATCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * * * *
1837939 AAAGTTTTAG-T-GA-TTTAAA-TTAAAA-C-TGACTCTTCTTTCTTCCCTCCCTAGTTTTT
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
* * *
1837995 AAAATTTTAGTGAAA-TTTAAAATT-AAA-CTTTAATCTTC-TTC-TCCCTC
1 AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTC
1838042 TTAATTTTAA
Statistics
Matches: 3538, Mismatches: 620, Indels: 602
0.74 0.13 0.13
Matches are distributed among these distances:
46 3 0.00
47 2 0.00
48 8 0.00
49 30 0.01
50 39 0.01
51 87 0.02
52 116 0.03
53 128 0.04
54 131 0.04
55 172 0.05
56 112 0.03
57 99 0.03
58 61 0.02
59 152 0.04
60 136 0.04
61 415 0.12
62 1554 0.44
63 58 0.02
64 9 0.00
65 57 0.02
66 11 0.00
67 2 0.00
68 26 0.01
69 28 0.01
70 15 0.00
71 83 0.02
72 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (62 bp):
AAAATTTTAGTTAAATTTTAAATTTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTT
Found at i:1833755 original size:124 final size:122
Alignment explanation
Indices: 1833524--1838539 Score: 3275
Period size: 124 Copynumber: 42.6 Consensus size: 122
1833514 TAGTATTTCC
* * * ** *
1833524 AAAAATTTAGTTAAATTTTAAATTAAAATCTTCAATTTTCAGTCTTCCCTACCTAGTTTTTAAAA
1 AAAATTTTAGTTAAATTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAA
* * * * * *
1833589 TTTTAGTTAAATTTTAAATTTAAAACCATCAATTTTCATTCTTTCCTCCCTAATTTTT
65 TTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
** *
1833647 AAAATTTTAGTTAAATTTAAAATTTAAAATCTTCAATCTTCAATCTTCTCTCCCTAGTTTTTAAA
1 AAAATTTTAGTTAAATTTAAAA-TTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * *
1833712 ATTTTAGTAAAATTTTAAAATTAAAATCTTCAATCTTCTTTCTTACCTCCCTAGTTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * * *
1833771 AAAATTTTAGTTAAATTTTAAATCTAAAACCTTCAATTTTCATTCTTCCCTCCTTGGTTTCT-AA
1 AAAATTTTAGTTAAATTTAAAAT-TAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * * **
1833835 ATTTTAGTTAAATTTTAAATTTTAAATCTTCAATCTTCTTTCTTCCCTCCCTAGCTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * *
1833894 AAAATTTTAGTAAAATTTTAAAATTAAAACCTCCAATGTTCATTCTTCCCTCCCTAGTTTTTAGA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
** * * * * * *
1833959 ATTTTAGTTCAATTTT-AAATTTAAATCTTAAATCTTATTTCTTCCATCCCTACTTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * * *
1834017 TAAATTTTAG-AAAACTTTAAAATTAAAATCTTTAATCTTCTTTCTTACCTGCTTAGTTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * *
1834081 ATTTTACTAAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCATAATTTTC
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * ** * *
1834140 AAATTTTTAGTTAAATTTTAAATCTAAAACATTCCCTCTTCTTTCTTCTCTCTCTAGTTTTTAAT
1 AAAATTTTAGTTAAATTTAAAAT-TAAAAC-TTCAATCTTCTTTCTTCCCTCCCTAGTTTTT-A-
* * ** * * * *
1834205 GTTTTTTAAATTTTAGTTAAATTTT-AAATCTAAAATCTTCTCTCTTATCTATTCCCTCCCTAGT
62 -------AAATTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTTTCTTCCCTCCCTAAT
*
1834269 ATTT
119 TTTT
** * * * *
1834273 AAAATAATA-TTGAAATTTTAAAATTAAAATCTTGAATCTTCTTTCTTCCCTACATAATTTTTAA
1 AAAATTTTAGTT-AAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAA
* * * * * * *
1834337 AATTGTACTGAAATTTTAAAATTAAAACCTTCATTTTTCATTCTTCCCGCCCT-AGTTTT
63 AATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* ** * * * * *
1834396 AAAACTTTTAGTTAAAATTTAAATTTAAAACCTTCTCTCTTATCTCTTTCCTCCATAGTTTTAAA
1 AAAA-TTTTAGTT-AAATTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAA
* ** * * * * *
1834461 AATTTTAGTTAAATTTT-AAATCTAAAACCTTCTCTCTTATCTCTTTCCTCCCTAGTTTTA
63 AATTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * *
1834521 AAAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTATTTCTCCCCTCCCTAGTTTCTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * ** * * * *
1834586 ATTTTAGTAAAATTTT---AGTAAAATTTTAAATTTCTCTTATCTCTCCCTCTCTAGTTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCT-TCTT-TCT-TCCCTCCCTAATTTTT
* * * * *
1834645 ACAATTATAGTGAAATTTTAAAATTAAAATCTTCAAT-TT-TTTC-TCCCTCACTAATTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * ** *
1834707 ATTTTAGTGAAACTTTAAATTTAAAATTTCTCTAT-TATCTTT-TT-CCTCCCTAATTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCT-TCAATCT-TCTTTCTTCCCTCCCTAATTTTT
* * * * *
1834765 TAAATTTTAGTGAAATAATAAAATTAAAACCTTTAATCTTCTTTCTCCCCTCCCTAGTTTTTAAA
1 AAAATTTTAGTTAAAT-TTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * *
1834830 ATTTTAGTTAAATTTT-AAATCTAAAATCTTCAATCTTCTTTCTTCCCTCCCTAGTTTTA
64 ATTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* ** * * * *
1834889 AAAATTTTAGTTAAATTTTAAATCTAAAACCTTCTCTCTTATCTCTTTCCTCCCTAGTTTTAAAA
1 AAAATTTTAGTTAAATTTAAAAT-TAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * * *
1834954 ATTTCAGTTAAAATTTT-AAATTAAAACCTTCAATCTTCTTTC-TCCGCTCTCTAGTTTCT
64 ATTTTAG-TGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCC-CTCCCTAATTTTT
* * * ** * * * * *
1835013 AAAATTGTAGTAAAAGTTTAAATTTAAAACCTTCTCTCTTATCTCTTTCCTCCATAATTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
** * * *
1835078 ATTTTAGTGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTACCTAGTTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
1835137 AAAATTTTAGTTAAATTTTAAATCTAAAATCTAAAATCTTCAATCTT-TATTCTTCCCTCCCTAG
1 AAAATTTTAGTTAAA---T---T-TAAAAT-TAAAA-CTTCAATCTTCT-TTCTTCCCTCCCTAG
* * * * * * *
1835201 -TTTAAAAATTTTAGTTACATTTT-AAATCTAAAACTTTC--TCTTTTATCTCTTTCCTCCCTAG
56 TTTTTAAAATTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCT-T-TCTTCCCTCCCTAA
*
1835262 TTTTA
118 TTTTT
* * *
1835267 AAAATTTTAGTTAAATTTTATAATTAAAACCTTCAATCTTCTTTCTCCCCTCCCTAGTTTCTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * * ** * * * *
1835332 ATTTTAGTAAAAGTTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTTA
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * ** * * *
1835391 AAAATTTTAATTAAATTTTAAATCTAAAACCTTCTCTCTTATCTCTTTCCTCCCTAGTTTTTAAA
1 AAAATTTTAGTTAAATTTAAAAT-TAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * *
1835456 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTATCCCCTCCCTAATTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
** * * * *
1835515 AAAA--TT--TTAAATTTAAAA-T----CTTCTCTCTTATCTCTTCCCTCCATAGTTTTAAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* * * * * * * *
1835571 TTTAGTTAAATTTT-AAATCTAAAATCTTTAATCTTCTTTCTCCCCTCACTAGTGTCT
66 TTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * ** * *
1835628 AAAATTTTAGTAAAATTTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * *
1835693 ATTTTATTTAAATTTTAAAATTAAAACCTTCAATCTTC-TTC-TCTCCTCCCTAGTTTCT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTC-CCTCCCTAATTTTT
* * * * * *
1835751 AAAATTTTAGTAAAAGTTT-AACTT-TAA----AATCTTCTCTCTTCCCTCTCTAGTTTTAAAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAA
* * * ** * * * * *
1835810 TTTTAATTAAATTTT-AAATCTAAAACCGTCTCTCTTATCTCTTTCCTCTCT-AGTTTT
65 TTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * *
1835867 AAAACTTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCACTAGTTTCTAA
1 AAAA-TTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAA
* * *
1835932 AATTTTAGTAAAATTTT-AAA-T----CTTTTC--TCTAATC-TT-TTCCCTCCCT-A-GTTT
63 AATTTTAGTGAAATTTTAAAATTAAAAC-CTTCAATCT--TCTTTCTTCCCTCCCTAATTTTT
* *
1835983 AAAGCTTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTC-TTCTTCCCT-CCTAGTTTCTAA
1 AAA-ATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAA
* * ** * * *
1836046 AATTTTAGT-AAAATTTAAAATTTAAAA-TTTCTCTCTTATCTCTTCCCTCCCTACTTTTT
63 AATTTTAGTGAAATTTTAAAA-TTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * * *
1836105 AAAATTATAGTGAAATTTTAAAATTAAAATCTTCAATCTTTTTTCCTCCCTCACTAATTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* * * ** * * ** *
1836170 ATTTTAGTGAAACTTTAAATTTAAAATCTTCGCTCTTTTTTCTTTCCTTACTGATTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * *
1836229 AAAATTTTAGTAATTTTACTAAAATTTTAAAATTAAAACCTCTAATTTTCATTT-TTCCCTCCAT
1 AAAATTTTAG------T--T-AAA-TTTAAAATTAAAACTTC-AATCTTC-TTTCTTCCCTCCCT
* * * **
1836293 AG-TTTTAAAACTTTTAGTTAAA-TTTCAAATCTAAAACCTTC--TC-ACTTATC-TCTTTCCCT
54 AGTTTTTAAAA-TTTTAGTGAAATTTTAAAAT-TAAAACCTTCAATCTTCTT-TCTTCCCTCCCT
*
1836352 AGTTTTT
116 AATTTTT
* * * * * * *
1836359 AAAATTTTTGTAAAAATTTAAAATTATAACCTTCCATCTTTTTTCTCCCCTCCTTAGTTTTTTTT
1 AAAATTTTAGT-TAAATTTAAAATTA-AAACTTCAATCTTCTTTCTTCCCTCCCTAG---TTTTT
* * * ** * * *
1836424 TAAATTTTAGTCAAATTTTAAAATTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTTT
61 AAAATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * * * *
1836486 AAAAATATAGTGAAATTTTAAAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTTAAG
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
* ** * * *
1836551 ATTTTAGCGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCCAT-AGTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* ** *
1836609 AAAACTTTTAGTTAAATTTTAAATCTAAAA--TC--TC-TCTTATC-TCTTTCCCAAGTTTTTAA
1 AAAA-TTTTAGTTAAATTTAAAAT-TAAAACTTCAATCTTCTT-TCTTCCCTCCCTAGTTTTTAA
** * * *
1836668 AATTTTAGCAAAATTTTAAAATTAAAACCTTCAATCTTTTTTCTTCCCTCCTTAGTTTTT
63 AATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * * *
1836728 TAAATTTTAGTGAAATTTTAAAATTAAAATATTCAATCCTCTTTCCTCCCTCCCTAATTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
** * * ** *
1836793 ATTTTAGTGAAACATTAAATTTAAAGCCTTCCCT-TTCTTTCTTCCCTCCCTAGTTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * *
1836851 AAAATTTTAGTGAAATTTTAAAATTAAAACCCTCACTCTTCTTTCTTCCCTCCTTAATTTTTAAA
1 AAAATTTTAGTTAAA-TTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAA
*
1836916 A-TTTAGTGAAATTTTAAAA-T-AAACCTTTAA--TTCTTTC-TCCACTCCCTAATTTTT
64 ATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCC-CTCCCTAATTTTT
* ***
1836970 -AAATTTTAGTGAAATTTTAAAATTAAAACTTTC--TCTACTCTTTCTTGATTCCCTAGTTTTT-
1 AAAATTTTAGTTAAA-TTTAAAATTAAAAC-TTCAATCT--TCTTTCTTCCCTCCCTAGTTTTTA
* ** * * * *
1837031 AAAGTTTAGAAAAAATTT-AAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTT
62 AAATTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* *
1837091 AAAATTTTAG-CAAAATTAAAATTAAAACCTTCAATC-T-TTT-TTCCCT-CCTAG-TTTT-AAA
1 AAAATTTTAGTTAAATTTAAAATTAAAA-CTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAA
* * * *
1837149 TTTTAGT-AAATTTT-AAA-TAAAA---TC-TTCTTCTATC-T--CTTCC-AGTTTTT
65 TTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * *
1837196 AAAA-TTTAG--CAATTTTAAATTAAAA-TTCAATC-TC-TTCCT-CC-CCCTA-TTTTTTAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
*
1837252 TTTAGTGAAA---T-AAATTAAAA-CTTC--T-TTCTTTCTTCCCT-CCTAGTTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* *
1837300 AAAA-TTTAGTGAAATTTAAAATTAAAA--T--A---TCATTCTTCCCT-CCTA-TTTTT-AAA-
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* *
1837353 TTTAGTGAAA--TT-AAATT-AAACCTT---TTTTCTTTC-TCCCTCCCTAGTTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * *
1837402 -AAATTTTAGTGAATTTTAAAATTAAAACCTC-A-C-TCTTT-TT-CTTCCCTAATTTTTAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
*
1837461 TTTA--GAAATTTTAAAATT-AAACCTTTAATCTTC-TTCTTCCCT-CCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * *
1837513 -AAA-TTTAGTGAAA-TT-AAATTAAAACTT---TC-CCTCTTCTT--TTCCCTAG-TTTTAAAG
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCT-TTCTTCCCTCCCTAGTTTTTAAAA
** * *
1837567 TTTTAGAAAAATTTT--AATT-AAACCTTTACTCTTCTTTC-TCCCT-CCTAATTTTT
65 TTTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* *
1837620 -AAATTTTAG-TGAA-TT-AAATTAAAACTTC-CTCTTCTTTCTTCCCT-CCTAGTTTTTAAAA-
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
*
1837678 TTTAGTGAAATTTT--AATT-AAACC-T---TCTTCTTTC-T-ACT-CCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
*
1837725 AAAATTTTAG-TGAATTTAAAATTAAAA-TT--A-CTTCTTTC-TCCCTCCCTAGTTTTTAAAA-
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
*
1837783 TTTA--GAAA-TTT-AAATTAAAACC-TCACTC-TC-TTCTT-CCT-CCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * *
1837831 AAAATTTTAATGAAATTT-AAATTAAAA-TT-AATCTTCTTTC-TCCC-CCCTAATTTTTAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* * *
1837891 TTTA--GAAA-TTTAAAATT-AAACCTT-TA-C-TC-TTCTT-CATCCCTAGTTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * *
1837939 AAAGTTTTAG-T-GATTT-AAATTAAAAC-TGACTCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* *
1838000 TTTAGTGAAA-TTTAAAATT-AAA-CTTTAATCTTC-TTC-TCCCT-CTTAA-TTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
1838050 AAAA-TTTAG-T--A-TT-AAATTAAAACTTC--TC-T-TTTCTT-CCT-CCTA-TTTTT-AAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* *
1838101 TTTAGTGAAATTTTAAAATT-AAA-CTTCACTCTTCTTTC-T-CCT-CCT-AGTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * *
1838152 -AAA-TTTA-ATAAATTT-AAATT-AAACTTC--TC-TATTTCTT-TCTTCCTA-TTTTT-AAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* *
1838206 TTTAGTGAAATTTTAAAATT-AAACCTTTAATCTTCTTTCTT-ACTCCCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * ** *
1838261 -AAATTTTAGTGAAATTT-AAATTCAAACTTCCCTCTTC-TTCTT-CCT---TAG-TTTT-AAAG
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
*
1838317 TTTAGTG--A-TTT-AAATT-AAACCTTCACTC-TCTTTCTT-CCTCCCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* *
1838367 AAAATTTTAGTGAAATTT-AAATTAAAACTTC-CTC-TCTTTC-T-CCT-CCTAGTTTTTAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
* *
1838426 TTTAGTG--A-TTT--AATTTAAA-CTTC-CTC-TCTTTCTT-CCT-CCTAATTTTT
66 TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
* * * * *
1838473 AAAGTTTTAG-TGAATTTAAAATTAAACCTTCACTC-TCTTTC-T-CCT-CCTA-ATTTTAAAAT
1 AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
1838532 TTTAGTGA
66 TTTAGTGA
1838540 TTTGAATTAA
Statistics
Matches: 4029, Mismatches: 591, Indels: 562
0.78 0.11 0.11
Matches are distributed among these distances:
100 4 0.00
101 78 0.02
102 106 0.03
103 59 0.01
104 55 0.01
105 112 0.03
106 191 0.05
107 199 0.05
108 123 0.03
109 91 0.02
110 52 0.01
111 74 0.02
112 25 0.01
113 101 0.03
114 41 0.01
115 27 0.01
116 113 0.03
117 47 0.01
118 164 0.04
119 54 0.01
120 89 0.02
121 128 0.03
122 140 0.03
123 484 0.12
124 1052 0.26
125 62 0.02
126 15 0.00
127 53 0.01
128 7 0.00
129 6 0.00
130 84 0.02
131 28 0.01
132 24 0.01
133 130 0.03
134 11 0.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.46
Consensus pattern (122 bp):
AAAATTTTAGTTAAATTTAAAATTAAAACTTCAATCTTCTTTCTTCCCTCCCTAGTTTTTAAAAT
TTTAGTGAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCCTAATTTTT
Found at i:1834268 original size:71 final size:72
Alignment explanation
Indices: 1834135--1834274 Score: 185
Period size: 71 Copynumber: 2.0 Consensus size: 72
1834125 CCCTCCATAA
* * * * * *
1834135 TTTTCAAATTTTTAGTTAAATTTTAAATCTAAAACATTCCCTCTTCTTTCTTCTCTCTCTAGTTT
1 TTTTCAAATTTTTAGTTAAATTTTAAATCTAAAACATTCCCTCTTATCTATTCCCTCCCTAGTAT
1834200 TTAATGT
66 TTAATGT
* *
1834207 TTTTTAAA-TTTTAGTTAAATTTTAAATCTAAAATC-TTCTCTCTTATCTATTCCCTCCCTAGTA
1 TTTTCAAATTTTTAGTTAAATTTTAAATCTAAAA-CATTCCCTCTTATCTATTCCCTCCCTAGTA
1834270 TTTAA
65 TTTAA
1834275 AATAATATTG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
71 51 0.86
72 8 0.14
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (72 bp):
TTTTCAAATTTTTAGTTAAATTTTAAATCTAAAACATTCCCTCTTATCTATTCCCTCCCTAGTAT
TTAATGT
Found at i:1834539 original size:186 final size:184
Alignment explanation
Indices: 1833524--1838431 Score: 2774
Period size: 186 Copynumber: 27.7 Consensus size: 184
1833514 TAGTATTTCC
* *
1833524 AAAAA-TTTAGTTAAATTTTAAATTAAAATCTTCAAT-TT-TCAGTCTTCCCTACCTAGTTTTTA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATC--TCTTCCCTCCCTAGTTTTTA
* * * * *
1833586 AAATTTTAGTTAAATTTTAAATTTAAAACCATCAATTTTCATTCTTTCCTCCCTAATTTTTAAAA
64 AAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCT-AGTTTTAAAA
** * *
1833651 TTTTAGTT-AAATTTAAAATTTAAAATCTTCAATCTTCA-ATCTTCTCTCCCTAGTTTT
128 TTTTAGTTAAAATTT-AAATTTAAAATCTTCTCTCTT-ATCTCTTCCCTCCCTAGTTTT
* * * * * *
1833708 TAAAATTTTAGTAAAATTTTAAAATTAAAATCTTCAATCTTCTTTCTTACCTCCCTAGTTTTTAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * *
1833773 AATTTTAGTTAAATTTT-AAATCTAAAACCTTCAATTTTCATTCTTCCCTCCTTGGTTTCT-AAA
65 AATTTTAGTTAAATTTTAAAAT-TAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTT-TAAAA
* * ** * *
1833836 TTTTAGTTAAATTTTAAATTTTAAATCTTCAATCTTCTTTCTTCCCTCCCTAGCTTTT
128 TTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAG-TTTT
* * *
1833894 -AAAATTTTAGTAAAATTTTAAAATTAAAACCTCCAATGTTCAT-TCTTCCCTCCCTAGTTTTTA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTT-ATCTCTTCCCTCCCTAGTTTTTA
* * * * * * * *
1833957 GAATTTTAGTTCAATTTT-AAATTTAAATCTTAAATCTT-ATTTCTTCCATCCCTACTTTTTTAA
64 AAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCA-TTCTTCCCTCCCTA-GTTTTAAA
* * * * * * *
1834020 ATTTTAG--AAAACTTTAAAATTAAAATCTT-TAATCTTCTTTCTTACCTGCTTAGTTTT
127 ATTTTAGTTAAAA-TTTAAATTTAAAATCTTCT-CTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * * *
1834077 TAAAATTTTACTAAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTTCCCTCCATAATTTTCAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * ** * * *
1834142 ATTTTTAGTTAAATTTT-AAATCTAAAACATTCCCTCTTCTTTCTTCTCTCTCTAGTTTTTAATG
65 AATTTTAGTTAAATTTTAAAAT-TAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTT-A--
* * *
1834206 TTTTTTAAATTTTAGTTAAATTTTAAATCTAAAATCTTCTCTCTTATCTATTCCCTCCCTAGTAT
125 ------AAATTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGT-T
1834271 TT
183 TT
** * * * * * * *
1834273 -AAAATAATA-TTGAAATTTTAAAATTAAAATCTTGAATCTTCTTTCTTCCCTACATAATTTTTA
1 AAAAATTTTAGTT-AAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTA
* * * * * *
1834336 AAATTGTACTGAAATTTTAAAATTAAAACCTTCATTTTTCATTCTTCCCGCCCTAGTTTTAAAAC
64 AAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAA-
* * *
1834401 TTTTAGTTAAAATTTAAATTTAAAACCTTCTCTCTTATCTCTTTCCTCCATAGTTTT
128 TTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
** * *
1834458 AAAAATTTTAGTTAAATTTTAAATCTAAAACCTTCTCTCTTATCTCTTTCCTCCCTAGTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
*
1834523 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTT-ATTTCTCCCCTCCCTAGTTTCTAAAA
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCA-TTCTTCCCTCCCTAGTTT-TAAAA
* *
1834587 TTTTAG-TAAAATTTTAGTAAAATTTTAAA--TT-TCTCTTATCTC-TCCCTCTCTAGTTTT
128 TTTTAGTTAAAA--TT--T-AAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * * *
1834644 TACAATTATAGTGAAATTTTAAAATTAAAATCTTCAAT-TT-TTTC-TCCCTCACTAATTTTTAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * * * * * * * *
1834706 AATTTTAGTGAAACTTTAAATTTAAAA-TTTC--TCTATTATCTTTTTCCTCCCTAATTTTTTAA
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCT-TCAT-TCTTCCCTCCCT-AGTTTTAAA
* * * * * * * *
1834768 ATTTTAG-TGAAATAATAAAATTAAAACCTT-TAATCTTCTTTCTCCCCTCCCTAGTTTT
127 ATTTTAGTTAAAAT-TTAAATTTAAAATCTTCT-CTCTTATCTCTTCCCTCCCTAGTTTT
* * * * *
1834826 TAAAATTTTAGTTAAATTTTAAATCTAAAATCTTCAATCTTCTTTCTTCCCTCCCTAGTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
** *
1834891 AATTTTAGTTAAATTTT-AAATCTAAAACCTTCTCTCTT-ATCTCTTTCCTCCCTAGTTTTAAAA
65 AATTTTAGTTAAATTTTAAAAT-TAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTT-AAA
* * ** * * *
1834954 ATTTCAGTTAAAATTTTAAA-TTAAAACCTTCAATCTTCTTTC-TCCGCTCTCTAGTTTCT
127 ATTTTAGTTAAAA-TTTAAATTTAAAATCTTCTCTCTTATCTCTTCC-CTCCCTAGTTT-T
* * * ** * * *
1835013 -AAAATTGTAGTAAAAGTTTAAATTTAAAACCTTCTCTCTTATCTCTTTCCTCCATAATTTTTAA
1 AAAAATTTTAGTTAAATTTTAAA-TTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* ** * * *
1835077 AATTTTAGTGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTACCTAGTTTTTAAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTAAAAT
* *
1835142 TTTAGTTAAATTTTAAATCTAAAATCTAAAATCTTCAATCTTTAT-TCTTCCCTCCCTAG-TTT
129 TTTAGTTAAAATTTAAATTTAAAATCT----TC-TC--TC-TTATCTCTTCCCTCCCTAGTTTT
* * ** * * *
1835204 AAAAATTTTAGTTACATTTTAAATCTAAAACTTTCTCTTTTATCTCTTTCCTCCCTAGTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * *
1835269 AATTTTAGTTAAATTTTATAATTAAAACCTTCAATCTTCTTTCTCCCCTCCCTAGTTTCTAAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTT-TAAAAT
1835334 TTTAG-TAAAAGTTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
129 TTTAGTTAAAA-TTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* ** *
1835390 AAAAATTTTAATTAAATTTTAAATCTAAAACCTTCTCTCTTATCTCTTTCCTCCCTAGTTTTTAA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * *
1835455 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTATCCCCTCCC------T--AA-T
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATT
*
1835511 TT--TTAAAATTTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCATAGTTTT
130 TTAGTTAAAA-TTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * * *
1835565 AAAAATTTTAGTTAAATTTTAAATCTAAAATCTTTAATCTTCTTTCTCCCCTCACTAGTGTCTAA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * * **
1835630 AATTTTAGTAAAATTTTAAATTTAAAATCTTCTCTCTT-ATCTCTTCCCTCCCTAGTTTTTAAAA
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAG-TTTTAAAA
* * * * ** *
1835694 TTTTATTTAAATTTTAAAATTAAAACCTTCAATCTTCT-TC-TCTCCTCCCTAGTTTCT
128 TTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTC-CCTCCCTAGTTT-T
* * * * * * *
1835751 -AAAATTTTAGTAAAAGTTTAACTT-TAA-----AATCTTCTCTCTTCCCTCTCTAGTTTTAAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* * ** * *
1835809 ATTTTAATTAAATTTT-AAATCTAAAACCGTCTCTCTT-ATCTCTTTCCTCTCTAGTTTTAAAAC
66 ATTTTAGTTAAATTTTAAAAT-TAAAACCTTCAATCTTCAT-TCTTCCCTCCCTAGTTTTAAAA-
* * * ** * * * *
1835872 TTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCACTAGTTTCT
128 TTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTT-T
* * * *
1835930 -AAAATTTTAGTAAAATTTTAAA-T----CTTTTC--TCTAATCTTTTCCCTCCCTAG--TTTAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAAC-CTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
*
1835985 AGCTTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTC-TTCTTCCCT-CCTAGTTTCTAAAA
65 A-ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTT-TAAAA
*
1836048 TTTTAG-TAAAATTTAAAATTTAAAAT-TTCTCTCTTATCTCTTCCCTCCCTACTTTT
128 TTTTAGTTAAAATTT-AAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * * * *
1836104 TAAAATTATAGTGAAATTTTAAAATTAAAATCTTCAATCTTTTTTCCTCCCTCACTAATTTTTAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * * * ** ** * ** *
1836169 AATTTTAGTGAAACTTTAAATTTAAAATCTTCGCTCTTTTTTCTTTCCTTACTGATTTTTAAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCT-AGTTTTAAAAT
* * * * * *
1836234 TTTAGTAATTTTACTAAAATTTTAAAATTAAAA-CCTCTAATTTTCAT-TTTTCCCTCCATAGTT
129 TTTAG------T--TAAAA-TTTAAATTTAAAATCTTCT-CTCTT-ATCTCTTCCCTCCCTAGTT
1836297 TT
183 TT
* * *
1836299 AAAACTTTTAGTTAAATTTCAAATCTAAAACCTTCTCA-CTTATCTCTT---TCCCTAGTTTTTA
1 AAAAATTTTAGTTAAATTTTAAAT-TAAAACCTTC-AATCTTATCTCTTCCCTCCCTAGTTTTTA
* * * * * ** * * *
1836360 AAATTTTTGTAAAAATTTAAAATTATAACCTTCCATCTTTTTTCTCCCCTCCTTAGTTTTTTTTT
64 AAATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG----TTTTA
* * *
1836425 AAATTTTAGTCAAATTTTAAAATTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTTT
125 AAATTTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAG-TTTT
* * * * * * * *
1836486 AAAAA-TATAGTGAAATTTTAAAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTTAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* ** ** * * *
1836550 GATTTTAGCGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCCATAGTTTTAAAACT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAA-T
* * *
1836615 TTTAGTTAAATTTTAAATCTAAAA---TCTCTCTTATCTCTT---TCCCAAGTTTT
129 TTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* ** * * * *
1836665 TAAAATTTTAGCAAAATTTTAAAATTAAAACCTTCAATCTTTTTTCTTCCCTCCTTAGTTTTTTA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* ** * * * *
1836730 AATTTTAGTGAAATTTTAAAATTAAAATATTCAATCCTCTTTCCTCCCTCCCTAATTTTTAAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCT-AGTTTTAAAAT
* ** * * *
1836795 TTTAGTGAAACA-TTAAATTTAAAGCCTTCCCT-TTCTTTCTTCCCTCCCTAGTTTT
129 TTTAGTTAAA-ATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * * *
1836850 TAAAATTTTAGTGAAATTTTAAAATTAAAACCCTCACTCTTCTTTCTTCCCTCCTTAATTTTTAA
1 AAAAATTTTAGTTAAATTTT-AAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAA
* * * * *
1836915 AA-TTTAGTGAAATTTTAAAA-T-AAACCTTTAA--TTCTTTC-TCCACTCCCTAATTTTTAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCC-CTCCCTAGTTTTAAAAT
* * * ***
1836974 TTTAGTGAAATTTTAAAATTAAAA-CTT-TCTC-TACTCTTTCTTGATTCCCTAGTTTT
129 TTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTA-TC--TCTTCCCTCCCTAGTTTT
* * ** * * * * * * *
1837030 -TAAAGTTTAGAAAAAATTTAAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAATTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* *
1837094 ATTTTAG-CAAA-ATTAAAATTAAAACCTTCAATCTT--TT-TTCCCT-CCTAGTTTT-AAATTT
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATTT
*
1837152 TAG-TAAATTTTAAA--TAAAATCTTCT-TC-TATCTC-T---T-CC-AGTTTT
131 TAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * *
1837195 TAAAA-TTTAG--CAATTTTAAATTAAAA--TTCAATCTCT-TC-C-T-CC-CCCTA-TTTTTTA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCT-TATCTCTTCCCTCCCTAGTTTTTAA
* *
1837249 AATTTTAGTGAAA---T-AAATTAAAA-CTTC--T-TTCTTTCTTCCCT-CCTAGTTTTTAAAA-
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTAAAAT
* * *
1837304 TTTAG-TGAAATTTAAAATTAAAA-----TATC--AT-TCTTCCCT-CCTA-TTTT
129 TTTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * *
1837349 -TAAA-TTTAGTGAAA--TTAAATT-AAACCTT---T-TT-TCTTTCTCCCTCCCTAGTTTTT-A
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCT-TCCCTCCCTAGTTTTTAA
* * * * *
1837403 AATTTTAG-TGAATTTTAAAATTAAAACC-TCACTCTT-TTTCTTCCCT---AATTTTTAAAATT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATT
* * * * * *
1837462 TTAG--AAATTTTAAAATT-AAACCTT-TAATCTTCT-TCTTCCCT-CCTAATTTT
130 TTAGTTAAAATTTAAATTTAAAATCTTCT-CTCTTATCTCTTCCCTCCCTAGTTTT
* * * **
1837512 -TAAA-TTTAGTGAAA--TTAAATTAAAACTTTCCCTC-T-TCT-TT---TCCCTAG-TTTTAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* ** * * * * *
1837566 GTTTTAGAAAAATTTT--AATT-AAACCTTTACTCTTCTTTC-TCCCT-CCTAATTTTTAAATTT
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATTT
* * *
1837626 TAG-T-GAA-TTAAA-TTAAAA-CTTC-CTCTTCTTTCTTCCCT-CCTAGTTTT
131 TAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * *
1837673 TAAAA-TTTAGTGAAATTTT-AATT-AAACCTTC-TTC-T-T-TC-T-ACT-CCTAATTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* *
1837728 ATTTTAG-TGAA-TTTAAAATTAAAA--TT--A-CTTCTTTC-TCCCTCCCTAGTTTTTAAAA-T
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTAAAATT
* * * *
1837784 TTAG---AAATTTAAA-TTAAAA-CCTCACTC-TCT-TCTT-CCT-CCTAATTTT
130 TTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * *
1837830 TAAAATTTTAATGAAA-TTTAAATTAAAA--TT-AATCTTCTTTC-TCCC-CCCTAATTTTTAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* * *
1837889 ATTTTAG--AAA-TTTAAAATT-AAACCTT-TA-C-TC-TTCTT-CATCCCTAGTTTTTAAAGTT
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTAAAATT
* ** * *
1837945 TTAG-T--GATTTAAA-TTAAAA-C-TGACTCTTCTTTCTTCCCTCCCTAGTTTT
130 TTAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * * * * *
1837994 TAAAATTTTAGTGAAATTTAAAATT-AAA-CTTTAATCTTCT-TC-TCCCT-CTTA-ATTTTAAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
*
1838053 A-TTTAG-T--A--TT-AAATTAAAA-CTTC--TCTT--TTCTT-CCT-CCTA-TTTTTAAATTT
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATTT
* * * *
1838103 TAGTGAAATTTTAAAATT-AAA-CTTCACTC-T-TCT-TTCTCCT-CCTAGTTTT
131 TAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTC-CCTCCCTAGTTTT
* * * *
1838152 --AAA-TTTA-ATAAA-TTTAAATT-AAA-CTTC--TC-TATTTCTT-TCTTCCTA-TTTTT-AA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
* * * * * *
1838204 ATTTTAGTGAAATTTTAAAATT-AAACCTTTAATCTTCTTTCTT-ACTCCCTAATTTTTAAATTT
66 ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATTT
* * * *
1838267 TAG-TGAAATTTAAA-TTCAAA-CTTCCCTCTTCT-TCTT-CCT---TAGTTTT
131 TAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
* * * *
1838313 --AAAGTTTAG-T-GA-TTTAAATT-AAACCTTCACTCTCT-T-TCTT-CCTCCCTAATTTTTAA
1 AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCT-TATCTCTTCCCTCCCTAGTTTTTAA
* * *
1838369 AATTTTAGTGAAA-TTT-AAATTAAAA-CTTC-CTC-TCTTTC-T-CCT-CCTAGTTTTTAAAAT
65 AATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAG-TTTTAAAAT
1838426 TTTAGT
129 TTTAGT
1838432 GATTTAATTT
Statistics
Matches: 3860, Mismatches: 539, Indels: 672
0.76 0.11 0.13
Matches are distributed among these distances:
149 3 0.00
150 7 0.00
151 15 0.00
152 21 0.01
153 47 0.01
154 53 0.01
155 20 0.01
156 42 0.01
157 65 0.02
158 56 0.01
159 55 0.01
160 105 0.03
161 160 0.04
162 110 0.03
163 102 0.03
164 78 0.02
165 45 0.01
166 29 0.01
167 6 0.00
170 1 0.00
171 2 0.00
173 7 0.00
174 9 0.00
175 201 0.05
176 37 0.01
177 48 0.01
178 192 0.05
179 131 0.03
180 156 0.04
181 24 0.01
182 99 0.03
183 105 0.03
184 186 0.05
185 387 0.10
186 656 0.17
187 72 0.02
188 9 0.00
189 59 0.02
190 11 0.00
191 10 0.00
192 183 0.05
193 12 0.00
194 41 0.01
195 189 0.05
196 14 0.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.46
Consensus pattern (184 bp):
AAAAATTTTAGTTAAATTTTAAATTAAAACCTTCAATCTTATCTCTTCCCTCCCTAGTTTTTAAA
ATTTTAGTTAAATTTTAAAATTAAAACCTTCAATCTTCATTCTTCCCTCCCTAGTTTTAAAATTT
TAGTTAAAATTTAAATTTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAGTTTT
Found at i:1834598 original size:11 final size:11
Alignment explanation
Indices: 1834582--1834613 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
1834572 CCCTAGTTTC
1834582 TAAAATTTTAG
1 TAAAATTTTAG
1834593 TAAAATTTTAG
1 TAAAATTTTAG
1834604 TAAAATTTTA
1 TAAAATTTTA
1834614 AATTTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (11 bp):
TAAAATTTTAG
Found at i:1836950 original size:53 final size:52
Alignment explanation
Indices: 1836831--1838695 Score: 385
Period size: 54 Copynumber: 34.8 Consensus size: 52
1836821 TTCCCTTTCT
* **
1836831 TTCTTCCCTCCCTAGTTTTTAAAATTTTAGTGAAATTTTAAAATTAAAACCCTCACTCTTCT
1 TTCTTCCCTCCCTAATTTTTAAAA-TTTAGTGAAA-TTTAAAA-T-AAA----C-CT-TTAA
*
1836893 TTCTTCCCTCCTTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAA
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAA-TTTAAAATAAACCTTTAA
* **
1836946 TTCTTTCTCCACTCCCTAATTTTTAAATTTTAGTGAAATTTTAAAATTAAAACTTTCTCTACTCT
1 TTC--T-TCC-CTCCCTAATTTTTAAAATTTAGTGAAA-TTTAAAA-T-AAAC---CT-T--TAA
*** * * ** * * *
1837011 TTCTTGATTCCCTAGTTTTTAAAGTTTAGAAAAAATTTAAATTAAAATCTTCAA
1 TTCTTCCCTCCCTAATTTTTAAAATTTAG-TGAAATTTAAAAT-AAACCTTTAA
* * *
1837065 TCCTCTTTCCTCCCTCCCTAATTTTTAAAATTTTAG-CAAAATTAAAATTAAAACCTTCAA
1 T--TC--T--TCCCTCCCTAATTTTTAAAA-TTTAGTGAAATTTAAAA-T-AAACCTTTAA
* * * * * *
1837125 TCTTTTTTCCCT-CCT-AGTTTTAAATTTTAGT-AAATTTTAAATAAA-ATCTT-C
1 ---TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCT-TTAA
* * * * * * * *
1837176 TTCTATCTCTTCC-AGTTTTTAAAATTTAG-CAATTTTAAATTAAA-ATTCAA
1 TTCT-TCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
* * * * **
1837226 TCTCTTCCTCCCCCTATTTTTTAAATTTTAGTGAAA--TAAATTAAAACTTCTTTCT
1 T-TCTTCC-CTCCCTAATTTTTAAAATTTAGTGAAATTTAAAAT-AAAC--CTTTAA
* * * *
1837281 TTCTTCCCT-CCTAGTTTTTAAAATTTAGTGAAATTTAAAATTAAA-ATATCA
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAA-TAAACCTTTAA
* *
1837332 TTCTTCCCT-CCT-ATTTTT-AAATTTAGTGAAA-TTAAATTAAACCTTT-T
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
* * * * *
1837379 TTCTTTCTCCCTCCCTAGTTTTTAAATTTTAGTGAATTTTAAAATTAAAACC-TCAC
1 TTC--T-TCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAA-T-AAACCTTTAA
* * *
1837435 TCTTTTTCTTCCCTAATTTTTAAAATTT--TAGAAATTTTAAAATTAAACCTTTAA
1 T-TCTTCCCTCCCTAATTTTTAAAATTTAGT-GAAA-TTTAAAA-TAAACCTTTAA
* * **
1837489 TCTTCTTCTTCC-CTCCTAATTTTT-AAATTTAGTGAAA-TTAAATTAAAACTTTCC
1 --TTCTTC--CCTC-CCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
* ** * * ** * * *
1837543 CTCTTCTTTTCCCT-AGTTTTAAAGTTTTAGAAAAATTTTAATTAAACCTTTACTC
1 TTCTTC-CCTCCCTAATTTTTAAA-ATTTAGTGAAATTTAAAATAAACCTTTA--A
* * **
1837598 TTCTTTCTCC-CTCCTAATTTTTAAATTTTAGTG-AA-TTAAATTAAAACTTCCTCTTCT
1 TTC-TTC-CCTC-CCTAATTTTTAAAATTTAGTGAAATTTAAAAT-AAA---CCT-TTAA
* * * *
1837655 TTCTTCCCT-CCTAGTTTTTAAAATTTAGTGAAATTTTAATTAAACC-TT-C
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
* * *
1837704 TTCTT-TCTACTCCTAATTTTTAAAATTTTAGTG-AATTTAAAATTAAA--ATTAC
1 TTCTTCCCT-C-CCTAATTTTTAAAA-TTTAGTGAAATTTAAAA-TAAACCTTTAA
* * * *
1837756 TTCTTTCTCCCTCCCTAGTTTTTAAAATTTA--GAAATTTAAATTAAAACC-TCAC
1 TTC--T-TCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAAT-AAACCTTTAA
* * *
1837809 TCTCTTCTTCCT-CCTAATTTTTAAAATTTTAATGAAATTTAAATTAAA--ATTAA
1 T-TCTTC--CCTCCCTAATTTTTAAAA-TTTAGTGAAATTTAAAATAAACCTTTAA
*
1837862 TCTTCTTTCTCCCCCCTAATTTTTAAAATTT--TAGAAATTTAAAATTAAACCTTT-A
1 --TTC-TTC-CCTCCCTAATTTTTAAAATTTAGT-GAAATTTAAAA-TAAACCTTTAA
* * * * * **
1837917 CTCTTCTTCATCCCTAGTTTTTAAAGTTTTAGTG--ATTTAAATTAAAACTGACTCTTCT
1 TTCTTC--CCTCCCTAATTTTTAAA-ATTTAGTGAAATTTAAAAT-AAAC---CT-TTAA
*
1837975 TTCTTCCCTCCCTAGTTTTTAAAATTTTAGTGAAATTTAAAATTAAA-CTTTAA
1 TTCTTCCCTCCCTAATTTTTAAAA-TTTAGTGAAATTTAAAA-TAAACCTTTAA
* * * **
1838028 TCTTCTTCTCC-CTCTTAA-TTTTAAAATTTAGT---A-TTAAATTAAAACTTCTCTT
1 --TTCTTC-CCTC-CCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTT-T-AA
* * *
1838080 TTCTT-CCT-CCT-ATTTTTAAATTTTAGTGAAATTTTAAAATTAAA-CTTCACTC
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAA-TTTAAAA-TAAACCTTTA--A
* * * * *
1838132 TTCTTTCTCCT-CCT-AGTTTT-AAATTTAAT-AAATTTAAATTAAACTTCTCTAT
1 TTC-TTC-CCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAAC--CTTTAA
* * *
1838184 TTCTT-TCTTCCT-ATTTTTAAATTTTAGTGAAATTTTAAAATTAAACCTTTAA
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAA-TTTAAAA-TAAACCTTTAA
* * * **
1838236 TCTTCTTTCTTACTCCCTAATTTTTAAATTTTAGTGAAATTTAAATTCAAA-C-TTCC
1 --TTC-TTC--CCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAAT-AAACCTTTAA
* * * * * * * * *
1838292 CTCTTCTTCTTCCTTAGTTTTAAAGTTTAGTG--ATTTAAATTAAACCTTCAC
1 TTCTTC-CCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
* * **
1838343 TCTCTTTCTTCCTCCCTAATTTTTAAAATTTTAGTGAAATTTAAATTAAAAC-TTCC
1 T-TC-TTC--CCTCCCTAATTTTTAAAA-TTTAGTGAAATTTAAAATAAACCTTTAA
* * * * **
1838399 TCTCTTTCTCCT-CCTAGTTTTTAAAATTTTAGTGATTTAATTTAAACT--TCCTCTCT
1 T-TC-TTC-CCTCCCTAATTTTTAAAA-TTTAGTGA---AATTTAAAATAAACCTTTAA
* * *
1838455 TTCTT-CCT-CCTAATTTTTAAAGTTTTAGTG-AATTTAAAATTAAACCTTCAC
1 TTCTTCCCTCCCTAATTTTTAAA-ATTTAGTGAAATTTAAAA-TAAACCTTTAA
* *
1838506 TCTCTTTCTCCT-CCTAA-TTTTAAAATTTTAGTG--ATTTGAATTAAAACC-----
1 T-TC-TTC-CCTCCCTAATTTTTAAAA-TTTAGTGAAATTTAAAAT-AAACCTTTAA
1838554 TTCTTCCC-CCCT--TTTTT-AAATTTAGTGAAATTTAAAATTAAA-CTTTAA
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAA-TAAACCTTTAA
* **
1838602 -TCTTCTTTCTCCCTCCTATTTTAAAATTTAGT---ATTTAAAATTAAAATTCTCTTT--
1 TTCTTC--CCTCCCTAAT-TTTTAAAATTTAGTGAAATTTAAAA-T-AAA--C-CTTTAA
* * *
1838656 TTCTT-CCT-CCTAGTTTTTAAATTTTAGTGAATTTTAAAAT
1 TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAAT
1838696 TAAAATCTTC
Statistics
Matches: 1381, Mismatches: 213, Indels: 428
0.68 0.11 0.21
Matches are distributed among these distances:
42 7 0.01
43 4 0.00
44 13 0.01
45 6 0.00
46 4 0.00
47 29 0.02
48 23 0.02
49 35 0.03
50 96 0.07
51 98 0.07
52 192 0.14
53 143 0.10
54 220 0.16
55 129 0.09
56 99 0.07
57 93 0.07
58 35 0.03
59 39 0.03
60 32 0.02
61 49 0.04
62 28 0.02
63 3 0.00
65 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (52 bp):
TTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTAAAATAAACCTTTAA
Found at i:1837002 original size:107 final size:103
Alignment explanation
Indices: 1836891--1838498 Score: 635
Period size: 107 Copynumber: 15.0 Consensus size: 103
1836881 CCTCACTCTT
*
1836891 CTTTCTTCCCTCCTTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAATTCTTTCTCC
1 CTTTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAATTCTTTCTCC
1836956 ACTCCCTAATTTTTAAATTTTAGTGAAATTTTAAAATTAAAA
66 -CT-CCTAATTTTTAAATTTTAGTGAAA-TTT-AAATTAAAA
* * ** * * * *
1836998 CTTTCTCTACTCTTTCTTGATTCCCTAGTTTTTAAAGTTTAGAAAAAATTTAAATTAAAATCTTC
1 CTTTCT-T-C-C---C-----TCCCTAATTTTTAAAATTTAGTGAAATTTTAAAAT-AAACCTTT
** *
1837063 AATCCTCTTTCCTCCCTCCCTAATTTTTAAAATTTTAGCAAAATTAAAATTAAAA
54 AAT--TCTTT-CTCCCT-CCTAATTTTT-AAATTTTAGTGAAATTTAAATTAAAA
* * * *
1837118 CCTTCAATCTTTTTTCCCT-CCT-AGTTTTAAATTTTAGT-AAATTTT-AAATAAA-ATCTT-CT
1 -CTT---TC----TTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCT-TTAAT
* * * * * *
1837177 TCTATCT-CTTCC-AGTTTTTAAAATTTAG-CAATTTTAAATTAAAA
57 TCTTTCTCCCTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
* * * * * *
1837221 TTCAATCTCTTCCTCCCCCTATTTTTTAAATTTTAGTGAAA---TAAATTAAAACTTCT--TTCT
1 --C--TTTCTTCC-CTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTT-TAATTCT
* *
1837281 TTCTTCCCTCCTAGTTTTTAAAATTTAGTGAAATTTAAAATTAAAATA
60 TTC-TCCCTCCTAATTTTTAAATTTTAGTGAAATTT-AAATT-AAA-A
* * *
1837329 TCATTCTTCCCT-CCT-ATTTTT-AAATTTAGTGAAA--TTAAATTAAACCTTT-TTTCTTTCTC
1 -CTTTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAATTCTTTCTC
* *
1837388 CCTCCCTAGTTTTTAAATTTTAGTGAATTTTAAAATTAAAA
65 CCT-CCTAATTTTTAAATTTTAGTGAAATTT-AAATTAAAA
* * *
1837429 CCTCACTCTTTTTCTTCCCTAATTTTTAAAATTT--TAGAAATTTTAAAATTAAACCTTTAA-TC
1 -CT---T-TCTTCCCTCCCTAATTTTTAAAATTTAGT-GAAATTTTAAAA-TAAACCTTTAATTC
1837491 TTCTTCTTCCCTCCTAATTTTTAAA-TTTAGTGAAA-TTAAATTAAAA
59 -T-TTC-TCCCTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
** * * ** * *
1837537 CTTTCCCTCTTCTTTTCCCT-AGTTTTAAAGTTTTAGAAAAATTTT-AATTAAACCTTTACTCTT
1 C-TT---TCTTC-CCTCCCTAATTTTTAAA-ATTTAGTGAAATTTTAAAATAAACCTTTA--ATT
1837600 CTTTCTCCCTCCTAATTTTTAAATTTTAGTG-AA-TTAAATTAAAA
58 CTTTCTCCCTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
* * * *
1837644 CTTCCTCTTCTTTCTTCCCTCCTAGTTTTTAAAATTTAGTGAAATTTT-AATTAAACC-TT-CTT
1 CTT--TCTTC---C--CTC-CCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAATT
*
1837706 CTTTCT-ACTCCTAATTTTTAAAATTTTAGTG-AATTTAAAATTAAAATTA
58 CTTTCTCCCTCCTAATTTTT-AAATTTTAGTGAAATTT-AAATT-AAA--A
* * * * *
1837755 CTTCTTTCTCCCTCCCTAGTTTTTAAAATTTA--GAAA-TTTAAATTAAAACC--TCACTCTCTT
1 CTT-TCT-TCCCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAAT-AAACCTTTAATTCT-TT
* *
1837815 CTTCCTCCTAATTTTTAAAATTTTAATGAAATTTAAATTAAAATTA
62 CTCCCTCCTAATTTTT-AAATTTTAGTGAAATTTAAATT-AAA--A
* * *
1837861 ATCTTCTTTCTCCCCCCTAATTTTTAAAATTT--TAGAAA-TTTAAAATTAAACCTTT-ACTC-T
1 CT-TTC-TTC-CCTCCCTAATTTTTAAAATTTAGT-GAAATTTTAAAA-TAAACCTTTAATTCTT
* * *
1837921 TCTTCATCCCTAGTTTTTAAAGTTTTAGTG--ATTTAAATTAAAACTGA
61 TCTCCCT-CCTAATTTTTAAA-TTTTAGTGAAATTTAAATT-AAA---A
*
1837968 CTCTTCTTTCTTCCCTCCCTAGTTTTTAAAATTTTAGTGAAA-TTTAAAATTAAA-CTTTAA-TC
1 -----CTTTCTTCCCTCCCTAATTTTTAAAA-TTTAGTGAAATTTTAAAA-TAAACCTTTAATTC
* *
1838030 TTCTTCTCCCTCTTAA-TTTTAAAATTTAGT---A-TTAAATTAAAA
59 -T-TTCTCCCTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
* * *
1838072 CTTCTCTTTTCTTCCT-CCT-ATTTTTAAATTTTAGTGAAATTTTAAAATTAAA-CTTCACTCTT
1 CTT-TC--TTC--CCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAA-TAAACCTTTA--ATT
* *
1838134 CTTTCT-CCTCCT-AGTTTTAAA-TTTAAT-AAATTTAAATT-AAA
58 CTTTCTCCCTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
* * *
1838175 CTTCTCTATTTCTTTCTTCCT-ATTTTTAAATTTTAGTGAAATTTTAAAATTAAACCTTTAATCT
1 CTT-TC---TTC--CCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAA-TAAACCTTTAA--T
** *
1838239 TCTTTCTTACTCCCTAATTTTTAAATTTTAGTGAAATTTAAATTCAAA
57 TCTTTCTCCCT-CCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
* * * * * * * *
1838287 CTTCCCTCTTCTTCTTCCTTAGTTTTAAAGTTTAGTG--A-TTTAAATTAAACCTTCACTCTCTT
1 CTT---TCTTC-CCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAAT-TCTT
*
1838349 TCTTCCTCCCTAATTTTTAAAATTTTAGTGAAATTTAAATTAAAA
61 TCTCCCT-CCTAATTTTT-AAATTTTAGTGAAATTTAAATTAAAA
* ** **
1838394 CTTCCTCTCTTTCTCCT-CCTAGTTTTTAAAATTTTAGTG--A-TTTAATTTAAA-C-TTCCTCT
1 C-T--T-TC-TTC-CCTCCCTAATTTTTAAAA-TTTAGTGAAATTTTAAAATAAACCTTTAAT-T
*
1838453 CTTTCTTCCTCCTAATTTTTAAAGTTTTAGTG-AATTTAAAATTAAA
58 CTTTCTCCCTCCTAATTTTTAAA-TTTTAGTGAAATTT-AAATTAAA
1838499 CCTTCACTCT
Statistics
Matches: 1227, Mismatches: 125, Indels: 299
0.74 0.08 0.18
Matches are distributed among these distances:
99 7 0.01
100 6 0.00
101 53 0.04
102 114 0.09
103 52 0.04
104 59 0.05
105 110 0.09
106 155 0.13
107 170 0.14
108 108 0.09
109 87 0.07
110 73 0.06
111 86 0.07
112 20 0.02
113 10 0.01
114 9 0.01
115 12 0.01
116 3 0.00
117 1 0.00
118 28 0.02
119 9 0.01
120 9 0.01
121 23 0.02
122 17 0.01
124 2 0.00
125 1 0.00
126 1 0.00
127 1 0.00
128 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (103 bp):
CTTTCTTCCCTCCCTAATTTTTAAAATTTAGTGAAATTTTAAAATAAACCTTTAATTCTTTCTCC
CTCCTAATTTTTAAATTTTAGTGAAATTTAAATTAAAA
Found at i:1837151 original size:54 final size:54
Alignment explanation
Indices: 1836421--1838556 Score: 621
Period size: 62 Copynumber: 38.6 Consensus size: 54
1836411 CTTAGTTTTT
* * **
1836421 TTTTAAATTTTAGTCAAATTTTAAAATTAAAATCTTCTCTCTTATCTCTTCCCTCCCTAG
1 TTTTAAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATCTT-T-T-TTCCCT-CCTAG
* * * * *
1836481 TTTTTAAAAATATAGTGAAATTTTAAAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAAT
1 -TTTT-AAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAAT-CT-TTT-TTCCCT-CCT-AG
*
1836544 TTTTAAGATTTTAGCGAAATAATAAAATTAAAACCTTCAATCTTCTTTCTCCCCTCCATAG
1 TTTTAA-ATTTTAG-GAAAT-TTAAAATTAAAACCTTCAATCTT-TTT-T-CCCTCC-TAG
* * * * * *
1836605 TTTTAAAACTTTTAGTTAAATTTTAAATCTAAAATCTCTCTTATC-TCTTT--C-CCAAG
1 TTTT-AAA-TTTTAG-GAAATTTAAAAT-TAAAACCT-TC-AATCTTTTTTCCCTCCTAG
*
1836661 TTTTTAAAATTTTAGCAAAATTTTAAAATTAAAACCTTCAATCTTTTTTCTTCCCTCCTTAG
1 -TTTT-AAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATC--TTTT-TTCCCTCC-TAG
** * *
1836723 TTTTTTAAATTTTAGTGAAATTTTAAAATTAAAATATTCAATCCTCTTTCCTCCCTCCCTAAT
1 --TTTTAAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAAT-CT-TTT-TTCCCT-CCT-AG
* * * ** *
1836786 TTTTAAAATTTTAGTGAAACATTAAATTTAAAGCCTTCCCTTTCTTTCTTCCCTCCCTAG
1 TTTT-AAATTTTAG-GAAA-TTTAAAATTAAAACCTT--CAATCTTTTTTCCCT-CCTAG
* * *
1836846 TTTTTAAAATTTTAGTGAAATTTTAAAATTAAAACCCTCACTCTTCTTTCTTCCCTCCTTAAT
1 -TTTT-AAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATC-T-TTT-TTCCCTCC-T-AG
* * * *
1836909 TTTTAAAATTTAGTGAAATTTTAAAA-T-AAACCTTTAAT-TCTTTCTCCACTCCCTAAT
1 TTTTAAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATCT-TTTTTCC-CT-CCT-AG
* * * ***
1836966 TTTTAAATTTTAGTGAAATTTTAAAATTAAAACTTTCTCTACTCTTTCTTGATTCCCTAG
1 TTTTAAATTTTAG-GAAA-TTTAAAATTAAAAC-CT-TC-AATCTTTTTTCCCT-CCTAG
* * * * *
1837026 TTTTTAAAGTTTAGAAAAAATTT-AAATTAAAATCTTCAATCCTCTTTCCTCCCTCCCTAAT
1 -TTTTAAATTTTAG--GAAATTTAAAATTAAAACCTTCAAT-CT-TTT-TTCCCT-CCT-AG
* *
1837087 TTTTAAAATTTTAGCAAAATTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
1 TTTT-AAATTTTAGGAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
* * * * * * *
1837142 TTTTAAATTTTAGTAAATTTTAAA-TAAAATCTTC-TTC-TATCT-CTTCC-AG
1 TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
* * * ** *
1837191 TTTTTAAAATTTA-GCAATTTTAAATTAAAA--TTCAATCTCTTCCTCCC-CCTATT
1 -TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCT-TTTTTCCCTCCTA-G
** *
1837244 TTTTAAATTTTAGTGAAA--T-AAATTAAAA-CTTCTTTCTTTCTTCCCTCCTAG
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
* * * *
1837295 TTTTTAAAATTTAGTGAAATTTAAAATTAAAA---T--ATCATTCTTCCCTCCTAT
1 -TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
*** *
1837346 TTTTAAA-TTTAGTGAAA-TT-AAATT-AAACCTTTTTTC-TTTCTCCCTCCCTAG
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCT-CCTAG
* * * *
1837397 TTTTTAAATTTTAGTGAATTTTAAAATTAAAACC-TCACTCTTTTTCTTCCCT--AAT
1 -TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATC-TTTT-TTCCCTCCTAG
* *
1837452 TTTTAAAATTTTA-GAAATTTTAAAATT-AAACCTTTAATCTTCTTCTTCCCTCCTAAT
1 TTTT-AAATTTTAGGAAA-TTTAAAATTAAAACCTTCAATCTT-TT-TTCCCTCCT-AG
* **
1837509 TTTTAAA-TTTAGTGAAA-TT-AAATTAAAACTTTCCCTCTTCTTTT--C-CCTAG
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTT-TTTTCCCTCCTAG
* * * * *
1837559 TTTTAAAGTTTTAGAAAAATTT-TAATT-AAACCTTTACTCTTCTTTCTCCCTCCTAAT
1 TTTTAAA-TTTTAG-GAAATTTAAAATTAAAACCTTCAATCTT-TTT-TCCCTCCT-AG
*
1837616 TTTTAAATTTTAGTG-AA-TT-AAATTAAAA-CTTC-CTCTTCTTTCTTCCCTCCTAG
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATC-T-TTT-TTCCCTCCTAG
* * * * * *
1837669 TTTTTAAAATTTAGTGAAATTT-TAATT-AAACCTTC-TTC-TTTCT-ACTCCTAAT
1 -TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCT-AG
1837721 TTTTAAAATTTTAGTG-AATTTAAAATTAAAA--TT--A-CTTCTTTCTCCCTCCCTAG
1 TTTT-AAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTT-TTT-TCCCT-CCTAG
* * * *
1837774 TTTTTAAAATTTA-GAAATTT-AAATTAAAACC-TCACTCTCTTCTT-CCTCCTAAT
1 -TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCT-TTTTTCCCTCCT-AG
* * *
1837827 TTTTAAAATTTTAATGAAATTT-AAATTAAAA--TT-AATCTTCTTTCTCCCCCCTAAT
1 TTTT-AAATTTT-AGGAAATTTAAAATTAAAACCTTCAATCTT-TTT-TCCCTCCT-AG
* * * *
1837882 TTTTAAAATTTTA-GAAATTTAAAATT-AAACCTTTACTC-TTCTT-CATCCCTAG
1 TTTT-AAATTTTAGGAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCT-CCTAG
* *
1837934 TTTTTAAAGTTTTAGTG--ATTT-AAATTAAAA-CTGACTC-TTCTTTCTTCCCTCCCTAG
1 -TTTTAAA-TTTTAG-GAAATTTAAAATTAAAACCT---TCAATCTTTTTTCCCT-CCTAG
* * * *
1837990 TTTTTAAAATTTTAGTGAAATTTAAAATT-AAA-CTTTAATCTTCTTCTCCCTCTTAA
1 -TTTT-AAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTT-TTTTCCCTCCTAG
* * *
1838046 TTTTAAAATTTA-G-TA-TT-AAATTAAAA-CTTC--TCTTTTCTT-CCTCCTAT
1 TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCTTTT-TTCCCTCCTAG
* *
1838093 TTTTAAATTTTAGTGAAATTTTAAAATT-AAA-CTTCACTCTTCTTTCTCCTCCTAG
1 TTTTAAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATCTTTTTTC-CCTCCTAG
** * * *
1838148 TTTTAAA-TTTAATAAATTT-AAATT-AAA-CTTC--TCTATTTCTTTCTTCCTAT
1 TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCT-TTT-TTCCCTCCTAG
* ** *
1838198 TTTTAAATTTTAGTGAAATTTTAAAATT-AAACCTTTAATCTTCTTTCTTACTCCCTAAT
1 TTTTAAATTTTAG-GAAA-TTTAAAATTAAAACCTTCAATCTT-TTT-TCCCT-CCT-AG
* **
1838257 TTTTAAATTTTAGTGAAATTT-AAATTCAAA-CTTCCCTCTTCTTCTT-CCT--TAG
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTT-TT-TTCCCTCCTAG
* * *
1838309 TTTTAAAGTTTAGTG--ATTT-AAATT-AAACCTTCACTCTCTTTCTT-CCTCCCTAAT
1 TTTTAAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCT-TTT-TTCCCT-CCT-AG
* *
1838363 TTTTAAAATTTTAGTGAAATTT-AAATTAAAA-CTTC-CTC-TCTTTCTCCTCCTAG
1 TTTT-AAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTC-CCTCCTAG
* * *
1838416 TTTTTAAAATTTTAGTG--ATTT--AATTTAAA-CTTC-CTCTCTTTCTT-CCTCCTAAT
1 -TTTT-AAATTTTAG-GAAATTTAAAATTAAAACCTTCAATCT-TTT-TTCCCTCCT-AG
* * *
1838469 TTTTAAAGTTTTAGTG-AATTTAAAATT-AAACCTTCACTC-TCTTTCTCCTCCTAA
1 TTTTAAA-TTTTAG-GAAATTTAAAATTAAAACCTTCAATCTTTTTTC-CCTCCTAG
*
1838523 TTTTAAAATTTTAGTG--ATTT-GAATTAAAACCTTC
1 TTTT-AAATTTTAG-GAAATTTAAAATTAAAACCTTC
1838557 TTCCCCCCTT
Statistics
Matches: 1646, Mismatches: 218, Indels: 430
0.72 0.10 0.19
Matches are distributed among these distances:
46 3 0.00
47 24 0.01
48 10 0.01
49 37 0.02
50 92 0.06
51 113 0.07
52 174 0.11
53 141 0.09
54 184 0.11
55 167 0.10
56 95 0.06
57 129 0.08
58 40 0.02
59 50 0.03
60 42 0.03
61 129 0.08
62 190 0.12
63 20 0.01
64 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.46
Consensus pattern (54 bp):
TTTTAAATTTTAGGAAATTTAAAATTAAAACCTTCAATCTTTTTTCCCTCCTAG
Found at i:1837256 original size:52 final size:52
Alignment explanation
Indices: 1837020--1838710 Score: 408
Period size: 52 Copynumber: 31.8 Consensus size: 52
1837010 TTTCTTGATT
* * * *
1837020 CCCTAGTTTTTAAAGTTTAGAAAAAATTTAAATTAAAATCTTCAATCCTCTTTCCTCCC
1 CCCTATTTTTTAAATTTTAG--AAATTTTAAATTAAAA--TTCACT-CTC-TTCCT-CC
* * * * **
1837079 TCCCTAATTTTTAAAATTTTAGCAAAATTAAAATTAAAACCTTCAATCT-TTTTTCC
1 -CCCT-ATTTTTTAAATTTTAG-AAATTTTAAATTAAAA--TTCACTCTCTTCCTCC
* * *
1837135 CTCCTA-GTTTTAAATTTTAGTAAATTTTAAA-TAAAA-TC-TTCTTCTAT-CTCT
1 C-CCTATTTTTTAAATTTTAG-AAATTTTAAATTAAAATTCACTC-TCT-TCCTCC
* * * * *
1837186 TCC-AGTTTTTAAAATTTAGCAATTTTAAATTAAAATTCAATCTCTTCCTCC
1 CCCTATTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTCTTCCTCC
** *
1837237 CCCTATTTTTTAAATTTTAGTGAAA---TAAATTAAAACTTCTTTCT-TTCTTCC
1 CCCTATTTTTTAAATTTTA--GAAATTTTAAATTAAAA-TTCACTCTCTTCCTCC
* * *
1837288 CTCCTAGTTTTTAAAATTTAGTGAAATTTAAAATTAAAATATCA-T-TCTT-C-CC
1 C-CCTATTTTTTAAATTTTA--GAAATTTTAAATTAAAAT-TCACTCTCTTCCTCC
* * * * *
1837340 TCCTA-TTTTTAAA-TTTAGTGAAA--TTAAATTAAACCTT--TTTTCTTTCTCCC
1 CCCTATTTTTTAAATTTTA--GAAATTTTAAATTAAA-ATTCACTCTCTTCCT-CC
* * * * * *
1837390 TCCCTAGTTTTTAAATTTTAGTGAATTTTAAAATTAAAACCTCACTCTTTTTCT-T
1 -CCCTATTTTTTAAATTTTAG-AAATTTT-AAATTAAAA-TTCACTCTCTTCCTCC
* * * * *
1837445 CCCTAATTTTTAAAATTTTAGAAATTTTAAAATTAAACCTTTAATCTTCTTCTTCC
1 CCCT-ATTTTTTAAATTTTAGAAATTTT-AAATTAAA-ATTCACTC-TCTTCCTCC
* * **
1837501 CTCCTAATTTTTAAA-TTTAGTGAAA--TTAAATTAAAACTTTC-C-CTCTTCTTTT
1 C-CCTATTTTTTAAATTTTA--GAAATTTTAAATTAAAA--TTCACTCTCTTCCTCC
* * * *
1837553 CCCTA-GTTTTAAAGTTTTAGAAAAATTTT-AATTAAACCTTTACTCTTCTTTCTCC
1 CCCTATTTTTTAAA-TTTTAG--AAATTTTAAATTAAA-ATTCACTC-TCTTCCTCC
* * *
1837608 CTCCTAATTTTTAAATTTTAGTGAA--TTAAATTAAAACTTC-CTCTTCTTTCTTCC
1 C-CCTATTTTTTAAATTTTAG-AAATTTTAAATTAAAA-TTCACTC-TC-TTCCTCC
* * * * *
1837662 CTCCTAGTTTTTAAAATTTAGTGAAATTTT-AATTAAACCTT--CT-TCTTTCTAC
1 C-CCTATTTTTTAAATTTTA--GAAATTTTAAATTAAA-ATTCACTCTCTTCCTCC
* * * * *
1837714 TCCTAATTTTTAAAATTTTAGTGAATTTAAAATTAAAATT-ACT-TCTTTCTCCC
1 CCCT-ATTTTTTAAATTTTAG-AAATTTTAAATTAAAATTCACTCTCTTCCT-CC
* * * *
1837767 TCCCTAGTTTTTAAAATTTAGAAA-TTTAAATTAAAACCTCACTCTCTTCTTCC
1 -CCCTATTTTTTAAATTTTAGAAATTTTAAATTAAAA-TTCACTCTCTTCCTCC
* * * *
1837820 TCCTAATTTTTAAAATTTTAATGAAA-TTTAAATTAAAATT-AATCTTCTTTCTCCC
1 CCCT-ATTTTTTAAATTTT-A-GAAATTTTAAATTAAAATTCACTC-TCTTCCT-CC
* * * * *
1837875 CCCTAATTTTTAAAATTTTAGAAATTTAAAATTAAACCTTTACTCTTCTTCAT--
1 CCCT-ATTTTTTAAATTTTAGAAATTTTAAATTAAA-ATTCACTC-TCTTCCTCC
* ** * * *
1837928 CCCTAGTTTTTAAAGTTTTAGTGA-TTTAAATTAAAACTGACTCTTCTTTCTTCCC
1 CCCTATTTTTTAAA-TTTTAGAAATTTTAAATTAAAATTCACTC-TC-TTCCT-CC
* * * * *
1837983 TCCCTAGTTTTTAAAATTTTAGTGAAATTTAAAATTAAACTTTAATCTTCTT-CTCC
1 -CCCTA-TTTTTTAAATTTTA--GAAATTTTAAATTAAAATTCACTC-TCTTCCTCC
* * * * * *
1838039 CTCT-TAATTTTAAAATTTAG---TATTAAATTAAAACTT--CTCTTTTCTTCC
1 CCCTAT-TTTTTAAATTTTAGAAATTTTAAATTAAAA-TTCACTCTCTTCCTCC
* * *
1838087 TCCTA-TTTTTAAATTTTAGTGAAATTTTAAAATTAAACTTCACTCTTCTTTCTCC
1 CCCTATTTTTTAAATTTTA--GAAATTTT-AAATTAAAATTCACTC-TCTTCCTCC
* * * * * * * * *
1838142 TCCTA-GTTTTAAATTTAATAAA-TTTAAATTAAACTTCTCTAT-TTCTTTCT
1 CCCTATTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTCTTC-CTCC
* * * * * *
1838192 TCCTA-TTTTTAAATTTTAGTGAAATTTTAAAATTAAACCTTTAATCTTCTTTCTTACT
1 CCCTATTTTTTAAATTTTA--GAAATTTT-AAATTAAA-ATTCACTC-TC-TTCCT-CC
* * * *
1838250 CCCTAATTTTTAAATTTTAGTGAAA-TTTAAATTCAAACTTC-C-CTCTTCTTCT
1 CCCTATTTTTTAAATTTTA--GAAATTTTAAATT-AAAATTCACTCTCTTCCTCC
* * * ** * *
1838302 TCCT-TAGTTTTAAAGTTTAGTGA-TTTAAATTAAACCTTCACTCTCTTTCTTCC
1 CCCTAT-TTTTTAAATTTTAGAAATTTTAAATTAAA-ATTCACTCTC-TTCCTCC
* *
1838355 TCCCTAATTTTTAAAATTTTAGTGAAA-TTTAAATTAAAACTTC-CTCTCTTTCTCC
1 -CCCT-ATTTTTTAAATTTTA--GAAATTTTAAATTAAAA-TTCACTCTCTTCCTCC
* * ** * * *
1838410 TCCTAGTTTTTAAAATTTTAGTGA-TTTAATTTAAACTTC-CTCTCTTTCTTCC
1 CCCTA-TTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTC-TTCCTCC
* * * * * *
1838462 TCCTAATTTTTAAAGTTTTAGTGAATTTAAAATTAAACCTTCACTCTCTTTCTCC
1 CCCTATTTTTTAAA-TTTTAG-AAATTTTAAATTAAA-ATTCACTCTCTTCCTCC
* * * ** *
1838517 TCCTAATTTTAAAATTTTAGTGA-TTTGAATTAAAA--C-CT-TCTT-C-CC
1 CCCTATTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTCTTCCTCC
* * * * *
1838562 CCC--TTTTTTAAA-TTTAGTGAAATTTAAAATTAAACTTTAATCTTCTTTCTCC
1 CCCTATTTTTTAAATTTTA--GAAATTTTAAATTAAAATTCACTC-TCTTCCTCC
* * * * * *
1838614 CTCCTA--TTTTAAAATTTAG-TATTTAAAATTAAAATTCTCT-TTTTCTTCC
1 C-CCTATTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTCTTCCTCC
* * *
1838663 TCCTAGTTTTTAAATTTTAGTGAATTTTAAAATTAAAATCTTCACTCT
1 CCCTATTTTTTAAATTTTAG-AAATTTT-AAATTAAAA--TTCACTCT
1838711 TCTCTCCCTA
Statistics
Matches: 1243, Mismatches: 231, Indels: 318
0.69 0.13 0.18
Matches are distributed among these distances:
42 4 0.00
43 7 0.01
44 2 0.00
45 13 0.01
46 2 0.00
47 32 0.03
48 16 0.01
49 45 0.04
50 93 0.07
51 119 0.10
52 209 0.17
53 124 0.10
54 183 0.15
55 170 0.14
56 68 0.05
57 60 0.05
58 19 0.02
59 38 0.03
60 26 0.02
61 13 0.01
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (52 bp):
CCCTATTTTTTAAATTTTAGAAATTTTAAATTAAAATTCACTCTCTTCCTCC
Found at i:1840957 original size:45 final size:45
Alignment explanation
Indices: 1840835--1840953 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 45
1840825 ATAATGCATC
* * *
1840835 ATTATGCATTTTCATTTATGGCA-ACCGTTCATGCCTTTTTATATACT
1 ATTATACA-TTTCATTTATGGCATA--TTTCATGCCTTTTTATACACT
* * * *
1840882 ATTATATATTTTATTTACGACATCATTTCATGCC-TTTTATACACCT
1 ATTATACATTTCATTTATGGCAT-ATTTCATGCCTTTTTATACA-CT
1840928 -TTATACATTTCATTTATGGCATATTT
1 ATTATACATTTCATTTATGGCATATTT
1840954 TCATACCAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
44 4 0.07
45 26 0.45
46 21 0.36
47 6 0.10
48 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (45 bp):
ATTATACATTTCATTTATGGCATATTTCATGCCTTTTTATACACT
Found at i:1841062 original size:79 final size:79
Alignment explanation
Indices: 1840929--1841225 Score: 418
Period size: 79 Copynumber: 3.8 Consensus size: 79
1840919 TATACACCTT
** * * * *
1840929 TATACATTTCATTTATGGCATATTTTCATACCAATAATGCATCCATATGAATTATTCTATTATGT
1 TATACATTTCAGCTATGGCATCTTTTCATGCCAATAATGCATCCATATGCATTATTCTTTTATGT
1840994 TGACAATGTACCCA
66 TGACAATGTACCCA
* * *
1841008 TATACATTTCAACTATGGCATCTTTTCATGCCAATTATGCACCCATATGCATTATTCTTTTATGT
1 TATACATTTCAGCTATGGCATCTTTTCATGCCAATAATGCATCCATATGCATTATTCTTTTATGT
1841073 TGACAATGTACCCA
66 TGACAATGTACCCA
* *
1841087 TATACATTTCAGCTATGTCAT-TCTTTCATGCCAATAATGCA-CCATATGCATTATTCTTTTACG
1 TATACATTTCAGCTATGGCATCT-TTTCATGCCAATAATGCATCCATATGCATTATTCTTTTATG
* *
1841150 CTGACAATGTACTCA
65 TTGACAATGTACCCA
* * * *
1841165 TATACATTTCAGCTATGACATCCTTTCATGCCAATAATGCATGCATATGCATTATTTTTTT
1 TATACATTTCAGCTATGGCATCTTTTCATGCCAATAATGCATCCATATGCATTATTCTTTT
1841226 CTCAACGGTA
Statistics
Matches: 197, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
78 73 0.37
79 124 0.63
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (79 bp):
TATACATTTCAGCTATGGCATCTTTTCATGCCAATAATGCATCCATATGCATTATTCTTTTATGT
TGACAATGTACCCA
Found at i:1841216 original size:157 final size:158
Alignment explanation
Indices: 1840929--1841225 Score: 427
Period size: 157 Copynumber: 1.9 Consensus size: 158
1840919 TATACACCTT
** * *
1840929 TATACATTTCATTTATGGCATATTTTCATACCAATAATGCATCCATATGAATTATTCTATTATGT
1 TATACATTTCAGCTATGGCATATTTTCATACCAATAATGCATCCATATGAATTATTCTATTACGC
* * *
1840994 TGACAATGTACCCATATACATTTCAACTATGGCATCTTTTCATGCCAATTATGCACCCATATGCA
66 TGACAATGTACCCATATACATTTCAACTATGACATCCTTTCATGCCAATAATGCACCCATATGCA
1841059 TTATTCTTTTATGTTGACAATGTACCCA
131 TTATTCTTTTATGTTGACAATGTACCCA
* * * *
1841087 TATACATTTCAGCTATGTCAT-TCTTTCATGCCAATAATGCA-CCATATGCATTATTCTTTTACG
1 TATACATTTCAGCTATGGCATAT-TTTCATACCAATAATGCATCCATATGAATTATTCTATTACG
* * **
1841150 CTGACAATGTACTCATATACATTTCAGCTATGACATCCTTTCATGCCAATAATGCATGCATATGC
65 CTGACAATGTACCCATATACATTTCAACTATGACATCCTTTCATGCCAATAATGCACCCATATGC
*
1841215 ATTATTTTTTT
130 ATTATTCTTTT
1841226 CTCAACGGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
157 87 0.71
158 35 0.29
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (158 bp):
TATACATTTCAGCTATGGCATATTTTCATACCAATAATGCATCCATATGAATTATTCTATTACGC
TGACAATGTACCCATATACATTTCAACTATGACATCCTTTCATGCCAATAATGCACCCATATGCA
TTATTCTTTTATGTTGACAATGTACCCA
Found at i:1841415 original size:68 final size:68
Alignment explanation
Indices: 1841245--1841633 Score: 611
Period size: 68 Copynumber: 5.8 Consensus size: 68
1841235 ACTTAACCGC
* *
1841245 TCATCTAACTAGCATAATTGACACCTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTA-C
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1841309 CTT
66 CTT
* * *
1841312 TAATTTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1841377 CTT
66 CTT
* * * *
1841380 TCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAATTAGGCCGCAAAGGCACTTAGA
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1841445 CTT
66 CTT
*
1841448 TCATCTAACTGGCATAATTTACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1841513 CTT
66 CTT
* ** * *
1841516 TCATTTAACTGGCATAATTGACATATTTCTATCAAATGCAAAGTTAGGCCTCAAAGG-ACTTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1841580 CTT
66 CTT
* *
1841583 TCATCTAACTGGCATAATTGACACCTTTCTGTAAAATGCACAATTAGGCCT
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCT
1841634 TTAAGCTTTT
Statistics
Matches: 291, Mismatches: 30, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
67 112 0.38
68 179 0.62
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (68 bp):
TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
CTT
Found at i:1841594 original size:203 final size:203
Alignment explanation
Indices: 1841245--1841632 Score: 661
Period size: 203 Copynumber: 1.9 Consensus size: 203
1841235 ACTTAACCGC
1841245 TCATCTAACTAGCATAATTGACACCTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTACC
1 TCATCTAACTAGCATAATTGACACCTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTACC
* * *
1841310 TTTAATTTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTA
66 TTTAATTTAACTGGCATAATTAACACATTTCTATCAAATGCAAAGTTAGGCCTCAAAGGCACTTA
*
1841375 GCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAATTAGGCCGCAAAGGCAC
131 GCCTTTCATCTAACTGGCATAATTGACACATTTCTGTAAAATGCACAATTAGGCCGCAAAGGCAC
1841440 TTAGACTT
196 TTAGACTT
* * *
1841448 TCATCTAACTGGCATAATTTACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
1 TCATCTAACTAGCATAATTGACACCTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTA-C
* * *
1841513 CTTTCATTTAACTGGCATAATTGACATATTTCTATCAAATGCAAAGTTAGGCCTCAAAGG-ACTT
65 CTTTAATTTAACTGGCATAATTAACACATTTCTATCAAATGCAAAGTTAGGCCTCAAAGGCACTT
*
1841577 AGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTAAAATGCACAATTAGGCC
130 AGCCTTTCATCTAACTGGCATAATTGACACATTTCTGTAAAATGCACAATTAGGCC
1841633 TTTAAGCTTT
Statistics
Matches: 173, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
203 118 0.68
204 55 0.32
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (203 bp):
TCATCTAACTAGCATAATTGACACCTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTACC
TTTAATTTAACTGGCATAATTAACACATTTCTATCAAATGCAAAGTTAGGCCTCAAAGGCACTTA
GCCTTTCATCTAACTGGCATAATTGACACATTTCTGTAAAATGCACAATTAGGCCGCAAAGGCAC
TTAGACTT
Found at i:1842048 original size:59 final size:58
Alignment explanation
Indices: 1841977--1842210 Score: 258
Period size: 59 Copynumber: 4.0 Consensus size: 58
1841967 TTTCCCATAC
* * *
1841977 GGAAATTCATACACTTAGGATGAATTTCTTATCATTTTAGCATACAAGGTGCCC-ATTCT
1 GGAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGCACACAA-GTGCCCTA-TCT
* * *
1842036 GGAAATTCATACACTTAGTATGAA-TTCATTATCCTGTTACCACACAAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTTC-TTATCATGTTAGCACAC-AAGTGCCCTATCT
* * * * * *
1842095 GGAAATTCATACACTTAGTATGAATTCCATCTCAAGTTAGCACATGAAGTGCTCTATCT
1 GGAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGCACA-CAAGTGCCCTATCT
* *
1842154 GGAAATTCATACACTTAGTATG-ATTTCCTTACCATTTTAGCACACTAAGTGCCCTAT
1 GGAAATTCATACACTTAGTATGAATTT-CTTATCATGTTAGCACAC-AAGTGCCCTAT
1842211 TGTAATCACC
Statistics
Matches: 145, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
58 6 0.04
59 134 0.92
60 5 0.03
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.34
Consensus pattern (58 bp):
GGAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGCACACAAGTGCCCTATCT
Found at i:1842538 original size:20 final size:22
Alignment explanation
Indices: 1842513--1842559 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1842503 TCCATAGTAT
1842513 CGATACTACTA-CCT-TGGTAC
1 CGATACTACTATCCTATGGTAC
* *
1842533 CGATACTTCTATGCTATGGTAC
1 CGATACTACTATCCTATGGTAC
1842555 CGATA
1 CGATA
1842560 TCCCCTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 2 0.09
22 11 0.48
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (22 bp):
CGATACTACTATCCTATGGTAC
Found at i:1846307 original size:79 final size:78
Alignment explanation
Indices: 1846173--1846448 Score: 311
Period size: 79 Copynumber: 3.5 Consensus size: 78
1846163 TATTTTCATT
* * * * ** * * * **
1846173 TATGACATCTTTCATGCCAAAAATGAACATATATGCATTATTCTATTATGCTGACAATGTACCCA
1 TATGGCATCTTTCATGACAATAATGCACCCATATACATTACTCTTTTACACTGACAATGTACCCA
*
1846238 TATATATTTCAGC
66 TATACATTTCAGC
* * *
1846251 TATGGCATCATTTCATGACAATAATGCACTCATATACATTACTCTTTTATATTGACAATGTACCC
1 TATGGCATC-TTTCATGACAATAATGCACCCATATACATTACTCTTTTACACTGACAATGTACCC
1846316 ATATACATTTCAGC
65 ATATACATTTCAGC
* * * *
1846330 TATGGCATCTTTTCAT-ACCAATAATGCACCCATATGCATTATTCTTTTACGCTGACAATGTACT
1 TATGGCATC-TTTCATGA-CAATAATGCACCCATATACATTACTCTTTTACACTGACAATGTACC
*
1846394 CATGTACATTTCAGC
64 CATATACATTTCAGC
* * *
1846409 TATGACATCCTTCATGCCAATAATGCACCCATATACATTA
1 TATGGCATCTTTCATGACAATAATGCACCCATATACATTA
1846449 TTTTTTTCTC
Statistics
Matches: 170, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 36 0.21
79 134 0.79
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (78 bp):
TATGGCATCTTTCATGACAATAATGCACCCATATACATTACTCTTTTACACTGACAATGTACCCA
TATACATTTCAGC
Found at i:1846572 original size:68 final size:68
Alignment explanation
Indices: 1846475--1846856 Score: 547
Period size: 68 Copynumber: 5.7 Consensus size: 68
1846465 ACTTAACCGC
* * * *
1846475 TCATCTAACTAGCATAATTGACACTTTTCTGTCAAATACACAGTTAGGCCTCAAAGACACCTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
1846540 CTT
66 CTT
* * * *
1846543 TCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAATTGGGCCTCAAAGGCACTTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
1846608 CTT
66 CTT
* * * * *
1846611 TCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAATTAGGCCACAAAGGCACTTAGA
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
1846676 CTT
66 CTT
*
1846679 TCATCTAACTGGCATAATTTACACCTTTCTGTCAAATGCACAGTTAGG-CTCAAAGGA-ACTTAG
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAA-GACACTTAG
1846742 CCTT
65 CCTT
* * * * * *
1846746 TCATTTAACTGGAATAATTAACA-CATTCTGTCAAATGCAAAGTTAGGCCTCAAAG-GACTTAGC
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
1846809 CTT
66 CTT
1846812 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
1 TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
1846857 GCCTTTAAGC
Statistics
Matches: 281, Mismatches: 29, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
66 53 0.19
67 59 0.21
68 169 0.60
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (68 bp):
TCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
CTT
Found at i:1847276 original size:59 final size:59
Alignment explanation
Indices: 1847203--1847552 Score: 289
Period size: 59 Copynumber: 6.0 Consensus size: 59
1847193 TTTCCCATAC
* * * * * *
1847203 GGAAATT--TACACTTAGGATGAATTTCTTATAAT-TTTCTCATACAAGGTGCCC-ATTCT
1 GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTAC-CACACAAAGTGCCCTA-TAT
* * **
1847260 GGAAATTCATACACTTAGTATGGATTCCTTCTCCTGTTACCACACAAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTACCACACAAAGTGCCCTATAT
* * * * ** *
1847319 GGAAATTCATACACTTAGTATGAATTCCATCTCATGTTAGCACATGAAGTGCCCTATCT
1 GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTACCACACAAAGTGCCCTATAT
* ** * * * * *
1847378 GGAAATTCATACACTTAGTATG-ATTCCATACCATTTTAGCACACTAAGTTCCCTATCT
1 GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTACCACACAAAGTGCCCTATAT
* ** * * * * *
1847436 GGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTGCTCTATCT
1 GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTACCACACAAAGTGCCCTATAT
* * * *
1847495 GGAAATTCATACACTTAGTATGATTTCCTT-TACCATTTTAGCACACTAAGTGCCCTAT
1 GGAAATTCATACACTTAGTATGAATTCCTTATA--ATGTTACCACACAAAGTGCCCTAT
1847553 TGTATCACCA
Statistics
Matches: 256, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
57 7 0.03
58 52 0.20
59 170 0.66
60 27 0.11
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (59 bp):
GGAAATTCATACACTTAGTATGAATTCCTTATAATGTTACCACACAAAGTGCCCTATAT
Found at i:1847455 original size:117 final size:116
Alignment explanation
Indices: 1847249--1847552 Score: 407
Period size: 117 Copynumber: 2.6 Consensus size: 116
1847239 CTCATACAAG
* * * * *
1847249 GTGCCC-ATTCTGGAAATTCATACACTTAGTATGGATTCCTTCTCCTGTTACCACACAAAGTGCC
1 GTGCCCTA-TCTGGAAATTCATACACTTAGTAT-GATTCCTAC-CATTTTAGCACACTAAGTGCC
1847313 CTATATGGAAATTCATACACTTAGTATGAATTCCAT-CTCATGTTAGCACA-TGAA
63 CTATATGGAAATTCATACACTTAGTATGAATTCCATAC-CATGTTAGCACACT-AA
*
1847367 GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCCATACCATTTTAGCACACTAAGTTCCCT
1 GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCC-TACCATTTTAGCACACTAAGTGCCCT
* * * *
1847432 ATCTGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAA
65 ATATGGAAATTCATACACTTAGTATGAATTCCATACCATGTTAGCACACTAA
*
1847484 GTGCTCTATCTGGAAATTCATACACTTAGTATGATTTCCTTTACCATTTTAGCACACTAAGTGCC
1 GTGCCCTATCTGGAAATTCATACACTTAGTATGA-TTCC--TACCATTTTAGCACACTAAGTGCC
1847549 CTAT
63 CTAT
1847553 TGTATCACCA
Statistics
Matches: 167, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
117 101 0.60
118 38 0.23
119 28 0.17
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (116 bp):
GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCCTACCATTTTAGCACACTAAGTGCCCTA
TATGGAAATTCATACACTTAGTATGAATTCCATACCATGTTAGCACACTAA
Found at i:1847566 original size:59 final size:58
Alignment explanation
Indices: 1847249--1847552 Score: 409
Period size: 59 Copynumber: 5.2 Consensus size: 58
1847239 CTCATACAAG
* * * *
1847249 GTGCCC-ATTCTGGAAATTCATACACTTAGTATGGATTCCTT-CTCCTGTTACCACACAAA
1 GTGCCCTA-TCTGGAAATTCATACACTTAGTAT-GATTCCTTAC-CATTTTAGCACACTAA
* * *
1847308 GTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCAT-CTCATGTTAGCACA-TGAA
1 GTGCCCTATCTGGAAATTCATACACTTAGTATG-ATTCCTTAC-CATTTTAGCACACT-AA
*
1847367 GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCCATACCATTTTAGCACACTAA
1 GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCCTTACCATTTTAGCACACTAA
*
1847425 GTTCCCTATCTGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAA
1 GTGCCCTATCTGGAAATTCATACACTTAGTATGA-TTCCTTACCATTTTAGCACACTAA
*
1847484 GTGCTCTATCTGGAAATTCATACACTTAGTATGATTTCCTTTACCATTTTAGCACACTAA
1 GTGCCCTATCTGGAAATTCATACACTTAGTATGA-TTCC-TTACCATTTTAGCACACTAA
1847544 GTGCCCTAT
1 GTGCCCTAT
1847553 TGTATCACCA
Statistics
Matches: 226, Mismatches: 12, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
58 54 0.24
59 143 0.63
60 29 0.13
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (58 bp):
GTGCCCTATCTGGAAATTCATACACTTAGTATGATTCCTTACCATTTTAGCACACTAA
Found at i:1848811 original size:19 final size:19
Alignment explanation
Indices: 1848787--1848825 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1848777 GGCATTACAT
1848787 ATATATATATATATATATA
1 ATATATATATATATATATA
1848806 ATATATATATATATATATA
1 ATATATATATATATATATA
1848825 A
1 A
1848826 CTTTTAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATATATATATATATATA
Found at i:1848842 original size:2 final size:2
Alignment explanation
Indices: 1848785--1848824 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
1848775 GGGGCATTAC
1848785 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1848825 ACTTTTAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1855653 original size:26 final size:25
Alignment explanation
Indices: 1855617--1855678 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 25
1855607 GTCGAAATAT
1855617 AATATATTAAGATTTTATTTTTTAAA
1 AATATATTAAGATTTTA-TTTTTAAA
1855643 AATATATTAAGATTTTATTTTTAAA
1 AATATATTAAGATTTTATTTTTAAA
*
1855668 AAAATTATTAA
1 AATA-TATTAA
1855679 TAATTAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 11 0.32
26 23 0.68
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (25 bp):
AATATATTAAGATTTTATTTTTAAA
Found at i:1855794 original size:23 final size:24
Alignment explanation
Indices: 1855750--1855794 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
1855740 AGGTGCATGT
* *
1855750 TTGAGTTCGAGTTTGAAGTTTTAA
1 TTGAGTTCGAGTTTAAAATTTTAA
*
1855774 TTGAGTT-GGGTTTAAAATTTT
1 TTGAGTTCGAGTTTAAAATTTT
1855795 TTTTCTTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (24 bp):
TTGAGTTCGAGTTTAAAATTTTAA
Found at i:1858031 original size:15 final size:15
Alignment explanation
Indices: 1858011--1858041 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1858001 TGCCATCATC
1858011 AACATAATCTGAATA
1 AACATAATCTGAATA
1858026 AACATAATCTGAATA
1 AACATAATCTGAATA
1858041 A
1 A
1858042 TACAATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (15 bp):
AACATAATCTGAATA
Found at i:1861792 original size:326 final size:325
Alignment explanation
Indices: 1861196--1861849 Score: 1174
Period size: 326 Copynumber: 2.0 Consensus size: 325
1861186 CCGCCGCAAG
1861196 GAGGAGCAATAAGAAGATGTTCGTTGCCATGGCGCTGAGAGAGAGCGAGAAAGAGAAACGGTTGG
1 GAGGAGCAATAAGAAGATGTTCGTTGCCATGGCGCTGAGAGAGAGCGAGAAAGAGAAACGGTTGG
1861261 TTAAGGTTGTTAATAGTGTGTTACGGAGAGGGTGTTTAAGTAAATTGGTGGAGAATGTGGCGGGA
66 TTAAGGTTGTTAATAGTGTGTTACGGAGAGGGTGTTTAAGTAAATTGGTGGAGAA-GTGGCGGGA
1861326 ATGGACGTTAAGGTGGATCCTAATTAAAATTTCAGTTAATTAAAATTAATTTAAAATTATCGAAC
130 ATGGACGTTAAGGTGGATCCTAATTAAAATTTCAGTTAATTAAAATTAATTTAAAATTATCGAAC
1861391 CGATCAGATTTCGGTATAAAATAATTGGTGTATTGAGATAAGTTATTAAATTTCTTAAACAATAT
195 CGATCAGATTTCGGTATAAAATAATTGGTGTATTGAGATAAGTTATTAAATTTCTTAAACAATAT
1861456 TAGAGTTCGAATATTGATGTTGCGAATAAAATAAATTGAGTTGATAGTGTCACTCTTATAAAAGA
260 TAGAGTTCGAATA-TGATGTTGCGAAT-AAAT-AATTGAGTTGATAGTGTCACTCTTATAAAAGA
1861521 TATT
322 TATT
1861525 GAGGAGCAATAAGAAGATGTTCGTTGCCATGGCGCTGAGAGAGAGCGAGAAAGAG-AACGGTTGG
1 GAGGAGCAATAAGAAGATGTTCGTTGCCATGGCGCTGAGAGAGAGCGAGAAAGAGAAACGGTTGG
1861589 TTAA-GTTGTTAATAGTGTGTTACGGA-AGGGTGTTTAAGTAAATTGGTGGAGAA-TGGCGGGAA
66 TTAAGGTTGTTAATAGTGTGTTACGGAGAGGGTGTTTAAGTAAATTGGTGGAGAAGTGGCGGGAA
*
1861651 TGGACGTTAAGGTGGATTCTAATTAAAATATTTCAGTTAATTAAAATTAATTTAAAAATTATCGA
131 TGGACGTTAAGGTGGATCCTAATT-AAA-ATTTCAGTTAATTAAAATTAATTT-AAAATTATCGA
*
1861716 ACTGATCAGATTTCGGTATAAAATAATTGGTGTA-TGAGATAAGTTATTAAATTTCTTAAACAAT
193 ACCGATCAGATTTCGGTATAAAATAATTGGTGTATTGAGATAAGTTATTAAATTTCTTAAACAAT
* *
1861780 ATTAGGGTTCGAATATGATGTTGCGAATAAGTAATTGAGTTGATAGTGTCACTCTTATAAAAGAT
258 ATTAGAGTTCGAATATGATGTTGCGAATAAATAATTGAGTTGATAGTGTCACTCTTATAAAAGAT
1861845 ATT
323 ATT
1861848 GA
1 GA
1861850 CGGTATCTAA
Statistics
Matches: 318, Mismatches: 4, Indels: 12
0.95 0.01 0.04
Matches are distributed among these distances:
323 38 0.12
324 35 0.11
325 16 0.05
326 95 0.30
327 66 0.21
328 13 0.04
329 55 0.17
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (325 bp):
GAGGAGCAATAAGAAGATGTTCGTTGCCATGGCGCTGAGAGAGAGCGAGAAAGAGAAACGGTTGG
TTAAGGTTGTTAATAGTGTGTTACGGAGAGGGTGTTTAAGTAAATTGGTGGAGAAGTGGCGGGAA
TGGACGTTAAGGTGGATCCTAATTAAAATTTCAGTTAATTAAAATTAATTTAAAATTATCGAACC
GATCAGATTTCGGTATAAAATAATTGGTGTATTGAGATAAGTTATTAAATTTCTTAAACAATATT
AGAGTTCGAATATGATGTTGCGAATAAATAATTGAGTTGATAGTGTCACTCTTATAAAAGATATT
Found at i:1868283 original size:2 final size:2
Alignment explanation
Indices: 1868242--1868274 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1868232 ATTAAAATCG
1868242 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1868275 GGGATATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1868368 original size:19 final size:19
Alignment explanation
Indices: 1868333--1868370 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1868323 TTTAGAACTG
*
1868333 TTAAAATAGATAGATGAGA
1 TTAAAATAGATAAATGAGA
1868352 TTAACAATAGA-AAATGAGA
1 TTAA-AATAGATAAATGAGA
1868371 AGATATTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24
Consensus pattern (19 bp):
TTAAAATAGATAAATGAGA
Found at i:1871920 original size:22 final size:22
Alignment explanation
Indices: 1871892--1871944 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
1871882 GTATGAACAA
1871892 TATCGATACCCTATGGAGGA-GG
1 TATCGATACCCTAT-GAGGAGGG
*
1871914 TATCGATA-CCTATGTGGAGGG
1 TATCGATACCCTATGAGGAGGG
1871935 TATCGATACC
1 TATCGATACC
1871945 AGGGAACTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 4 0.14
21 15 0.54
22 9 0.32
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (22 bp):
TATCGATACCCTATGAGGAGGG
Found at i:1876122 original size:21 final size:22
Alignment explanation
Indices: 1876098--1876149 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
1876088 GTATGAACAA
1876098 TATCGATACCCTA--TGGAGGGG
1 TATCGATACCCTATGTGGA-GGG
*
1876119 TATCAATA-CCTATGTGGAGGG
1 TATCGATACCCTATGTGGAGGG
1876140 TATCGATACC
1 TATCGATACC
1876150 AGTGAACTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 4 0.15
21 17 0.65
22 5 0.19
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (22 bp):
TATCGATACCCTATGTGGAGGG
Found at i:1885787 original size:14 final size:13
Alignment explanation
Indices: 1885751--1885777 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1885741 AAAACTATCT
1885751 ACGAATTTTGAAA
1 ACGAATTTTGAAA
1885764 ACGAATTTTGAAA
1 ACGAATTTTGAAA
1885777 A
1 A
1885778 ACGGTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (13 bp):
ACGAATTTTGAAA
Found at i:1885947 original size:81 final size:79
Alignment explanation
Indices: 1885798--1886003 Score: 285
Period size: 81 Copynumber: 2.6 Consensus size: 79
1885788 GAAATGTATT
*
1885798 TATTATATAGTTTTGAAAAGACATTTTTGAAAAC--ATATAT-ATATATGGTTTTTAAAACATCT
1 TATTATATAGTTTTGAAAAAACATTTTTGAAAACATATATATAATATATGGTTTTTAAAACATCT
1885860 TAAAAACTTTTATA
66 TAAAAACTTTTATA
1885874 TATTATATAGCTTTTGAAAAAAACATTTTTGAAAACATATATATAATATATGGTTTTTAAAACAT
1 TATTATATAG-TTTTG-AAAAAACATTTTTGAAAACATATATATAATATATGGTTTTTAAAACAT
* *
1885939 TTTGAAAACTTTTATA
64 CTTAAAAACTTTTATA
* * * * *
1885955 TAATATATAGTTTT-TAAAAATATTTTTGAATATATATATATATATATAT
1 TATTATATAGTTTTGAAAAAACATTTTTGAAAACATATATATA-ATATAT
1886004 ATATATTATA
Statistics
Matches: 116, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
76 10 0.09
77 5 0.04
78 42 0.36
79 6 0.05
80 10 0.09
81 43 0.37
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (79 bp):
TATTATATAGTTTTGAAAAAACATTTTTGAAAACATATATATAATATATGGTTTTTAAAACATCT
TAAAAACTTTTATA
Found at i:1885991 original size:2 final size:2
Alignment explanation
Indices: 1885984--1886013 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1885974 ATATTTTTGA
1885984 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1886014 GTTTTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1885995 original size:40 final size:40
Alignment explanation
Indices: 1885801--1886004 Score: 165
Period size: 38 Copynumber: 5.2 Consensus size: 40
1885791 ATGTATTTAT
* *
1885801 TATATAGTTTTGAAAAGACATTTTTG-AAA-ACATATAT-A
1 TATATAGTTTTTAAAA-ACATTTTTGAAAATATATATATAA
* * * * *
1885839 TATATGGTTTTT-AAAACA-TCTTAAAAACT-TTTATATAT
1 TATATAGTTTTTAAAAACATTTTTGAAAA-TATATATATAA
* *
1885877 TATATAGCTTTTGAAAAAAACATTTTTGAAAACATATATATAA
1 TATATAG-TTTT--TAAAAACATTTTTGAAAATATATATATAA
* *
1885920 TATATGGTTTTT-AAAACA-TTTTGAAAACT-TTTATATAA
1 TATATAGTTTTTAAAAACATTTTTGAAAA-TATATATATAA
* *
1885958 TATATAGTTTTTAAAAATATTTTTGAATATATATATATATA
1 TATATAGTTTTTAAAAACATTTTTGAAAATATATATATA-A
1885999 TATATA
1 TATATA
1886005 TATATTATAG
Statistics
Matches: 129, Mismatches: 22, Indels: 27
0.72 0.12 0.15
Matches are distributed among these distances:
35 3 0.02
36 6 0.05
37 8 0.06
38 44 0.34
39 16 0.12
40 15 0.12
41 7 0.05
42 10 0.08
43 20 0.16
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.45
Consensus pattern (40 bp):
TATATAGTTTTTAAAAACATTTTTGAAAATATATATATAA
Found at i:1886006 original size:88 final size:89
Alignment explanation
Indices: 1885910--1886104 Score: 236
Period size: 88 Copynumber: 2.2 Consensus size: 89
1885900 TTTTGAAAAC
* * * * *
1885910 ATATATATAATATATGGTTTTTAAAAC-ATTTTGAAAACTTTTATATAATATATAGTTTTTAAAA
1 ATATATATAATATATAGTTTTGAAAACAATTTT-AAAA-ATATATATAATATATAGTTTTGAAAA
* *
1885974 ATATTTTT-GAATA-TATATATATAT
64 ATATTTTTAAAAAAGTATATATATAT
*
1885998 ATATATAT-ATATTATAGTTTTGAAAACAAATTTTAAAAATATATATTATATATAGTTTTGAAAA
1 ATATATATAATA-TATAGTTTTGAAAAC-AATTTTAAAAATATATATAATATATAGTTTTGAAAA
*
1886062 TTATTTTTAAAAAAGTATATATATAT
64 ATATTTTTAAAAAAGTATATATATAT
1886088 ATATATATATATATATA
1 ATATATATA-ATATATA
1886105 TATATATATA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
87 3 0.03
88 50 0.55
89 7 0.08
90 24 0.26
91 4 0.04
92 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (89 bp):
ATATATATAATATATAGTTTTGAAAACAATTTTAAAAATATATATAATATATAGTTTTGAAAAAT
ATTTTTAAAAAAGTATATATATAT
Found at i:1886042 original size:38 final size:40
Alignment explanation
Indices: 1885996--1886092 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 40
1885986 ATATATATAT
1885996 ATATATATATATATTATAGTTTTGAAAACAAATTTT-AAAA
1 ATATATATATATA-TATAGTTTTGAAAACAAATTTTAAAAA
** *
1886036 ATATATAT-TATATATAGTTTTGAAAATTATTTTTAAAAA
1 ATATATATATATATATAGTTTTGAAAACAAATTTTAAAAA
1886075 AGTATATATATATATATA
1 A-TATATATATATATATA
1886093 TATATATATA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
38 19 0.37
39 9 0.18
40 15 0.29
41 8 0.16
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.45
Consensus pattern (40 bp):
ATATATATATATATATAGTTTTGAAAACAAATTTTAAAAA
Found at i:1886082 original size:2 final size:2
Alignment explanation
Indices: 1886077--1886119 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1886067 TTTAAAAAAG
1886077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1886119 T
1 T
1886120 TTTTTGAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1886134 original size:28 final size:27
Alignment explanation
Indices: 1886063--1886189 Score: 82
Period size: 26 Copynumber: 4.5 Consensus size: 27
1886053 TTTTGAAAAT
**
1886063 TATTTTTAAAAAAGTATATATATATATA
1 TATTTTTTGAAAA-TATATATATATATA
* * *
1886091 TA-TATAT-ATATATATATATATATATA
1 TATTTTTTGA-AAATATATATATATATA
1886117 TATTTTTTGAAAATTATATTTTTATATATATTA
1 TATTTTTTGAAAA-TATA----TATATATA-TA
1886150 TATAGTTTTTGAAAATATATATATAT-TA
1 TAT--TTTTTGAAAATATATATATATATA
*
1886178 TA-GTTTTGAAAA
1 TATTTTTTGAAAA
1886190 CAAATTTCAA
Statistics
Matches: 80, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
25 9 0.11
26 17 0.21
27 9 0.11
28 11 0.14
30 7 0.09
32 8 0.10
33 5 0.06
34 4 0.05
35 10 0.12
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (27 bp):
TATTTTTTGAAAATATATATATATATA
Found at i:1886143 original size:36 final size:36
Alignment explanation
Indices: 1886092--1886171 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
1886082 ATATATATAT
* * *
1886092 ATATATATATATATATATATATATATATTTTTTGAAA
1 ATATATATTTTTATATATAT-TATATAGTTTTTGAAA
1886129 AT-TATATTTTTATATATATTATATAGTTTTTGAAA
1 ATATATATTTTTATATATATTATATAGTTTTTGAAA
1886164 ATATATAT
1 ATATATAT
1886172 ATATTATAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
35 17 0.44
36 20 0.51
37 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (36 bp):
ATATATATTTTTATATATATTATATAGTTTTTGAAA
Found at i:1886168 original size:17 final size:16
Alignment explanation
Indices: 1886112--1886171 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 16
1886102 ATATATATAT
1886112 ATATATATTTTTTGAAA
1 ATATATA-TTTTTGAAA
1886129 AT-TATATTTTT-ATATA
1 ATATATATTTTTGA-A-A
1886145 TATTATATAGTTTTTGAAA
1 -A-TATATA-TTTTTGAAA
1886164 ATATATAT
1 ATATATAT
1886172 ATATTATAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
14 1 0.03
15 6 0.17
16 6 0.17
17 9 0.25
18 2 0.06
19 5 0.14
20 6 0.17
21 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
ATATATATTTTTGAAA
Found at i:1886244 original size:38 final size:37
Alignment explanation
Indices: 1886164--1886254 Score: 114
Period size: 38 Copynumber: 2.5 Consensus size: 37
1886154 GTTTTTGAAA
** *
1886164 ATATATATATAT-TATAGTTTTGAAAACAAATTTCAA-
1 ATATATATATATATATAGTTTTGAAAA-TTATTTTAAT
*
1886200 AAATATATATTATATATAGTTTTGAAAATTATTTTAAT
1 ATATATATA-TATATATAGTTTTGAAAATTATTTTAAT
1886238 ATATATATATATATATA
1 ATATATATATATATATA
1886255 TATTATAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 8 0.17
37 17 0.36
38 22 0.47
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.46
Consensus pattern (37 bp):
ATATATATATATATATAGTTTTGAAAATTATTTTAAT
Found at i:1886297 original size:44 final size:44
Alignment explanation
Indices: 1886167--1886298 Score: 143
Period size: 44 Copynumber: 3.1 Consensus size: 44
1886157 TTTGAAAATA
* ** *
1886167 TATATATATTATAGTTTTGAAAA-CA-AATTTCAAAA-ATATA-
1 TATATATATTATAGTTTTGAAAATTATTTTTTTAAAATATATAT
** *
1886207 TAT-TATA-TATAGTTTTGAAAATTATTTTAAT-ATATATATAT
1 TATATATATTATAGTTTTGAAAATTATTTTTTTAAAATATATAT
1886248 ATATATATATTATAGTTTTGAAAATTATTTTTTTAAAATATATAT
1 -TATATATATTATAGTTTTGAAAATTATTTTTTTAAAATATATAT
1886293 TATATA
1 TATATA
1886299 GTTTTTGAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
38 14 0.19
39 7 0.09
40 9 0.12
42 3 0.04
43 4 0.05
44 28 0.38
45 9 0.12
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (44 bp):
TATATATATTATAGTTTTGAAAATTATTTTTTTAAAATATATAT
Found at i:1886309 original size:24 final size:24
Alignment explanation
Indices: 1886276--1886322 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1886266 TGAAAATTAT
*
1886276 TTTTTTAAAATA-TATATTATATAG
1 TTTTTGAAAATATTATA-TATATAG
1886300 TTTTTGAAAATATTATATATATA
1 TTTTTGAAAATATTATATATATA
1886323 ATAATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTTTGAAAATATTATATATATAG
Found at i:1886312 original size:22 final size:25
Alignment explanation
Indices: 1886277--1886322 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
1886267 GAAAATTATT
1886277 TTTTTAAAATATA-TAT-TATATAG
1 TTTTTAAAATATATTATATATATAG
*
1886300 TTTTTGAAA-ATATTATATATATA
1 TTTTTAAAATATATTATATATATA
1886323 ATAATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 3 0.15
23 11 0.55
24 6 0.30
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TTTTTAAAATATATTATATATATAG
Found at i:1886330 original size:37 final size:39
Alignment explanation
Indices: 1886236--1886334 Score: 109
Period size: 38 Copynumber: 2.6 Consensus size: 39
1886226 AATTATTTTA
1886236 ATATATATATATATATATATATTATAGTTTTGAAAATTATT
1 ATATATATA-ATATATAT-TATTATAGTTTTGAAAATTATT
* * *
1886277 -TTTTTAAAATATATATTA-TATAGTTTTTGAAAA-TATT
1 ATATATATAATATATATTATTATAG-TTTTGAAAATTATT
1886314 ATATATATAATA-ATATT-TTAT
1 ATATATATAATATATATTATTAT
1886335 TTTTTATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
37 17 0.35
38 19 0.39
39 8 0.16
40 5 0.10
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (39 bp):
ATATATATAATATATATTATTATAGTTTTGAAAATTATT
Found at i:1891356 original size:94 final size:97
Alignment explanation
Indices: 1891182--1891382 Score: 306
Period size: 94 Copynumber: 2.1 Consensus size: 97
1891172 CCAAATTATA
* *
1891182 ATTATATATATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCTCACTTT
1 ATTATATATATATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCCACTTT
*
1891247 ATGGATAAGATTCAGCTAGCC-TGATAAAGGTG
66 ATGGATAAGAGTCAGCTA-CCTTGATAAAGGTG
*
1891279 ATTAT-TATA-ATACAAT-AAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAATGCCCCAGCTT
1 ATTATATATATATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCCA-CTT
1891341 TATGG-TAAGAGTCAGCTACCTTGATAAAGGTG
65 TATGGATAAGAGTCAGCTACCTTGATAAAGGTG
1891373 ATTATA-ATAT
1 ATTATATATAT
1891383 GGAGTTGTCC
Statistics
Matches: 96, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
93 2 0.02
94 70 0.73
95 15 0.16
96 4 0.04
97 5 0.05
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (97 bp):
ATTATATATATATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCCACTTT
ATGGATAAGAGTCAGCTACCTTGATAAAGGTG
Found at i:1892409 original size:56 final size:57
Alignment explanation
Indices: 1892343--1892449 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
1892333 AGTGCATCGA
*
1892343 TGCATAAAATGCATTTGATG-TTTCA-AAATAGC-CTGAGTGCATCAATGCATGGCTGG
1 TGCATAAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCAATGCATGGCTGG
* *
1892399 TGCATCAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCATTGCAT
1 TGCATAAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCAATGCAT
1892450 AGTATGTGCA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
56 19 0.42
57 23 0.51
58 3 0.07
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (57 bp):
TGCATAAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCAATGCATGGCTGG
Found at i:1895237 original size:23 final size:22
Alignment explanation
Indices: 1895203--1895281 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 22
1895193 CATGACCTTT
1895203 TGCATCGATGCACATTCAAGGCG
1 TGCATCGATGCACATTCAAGG-G
* * *
1895226 TGCATCGGTGCACCTTC-ATGG
1 TGCATCGATGCACATTCAAGGG
* *
1895247 TGTATCGATGCACATTCAAGGA
1 TGCATCGATGCACATTCAAGGG
* *
1895269 TGAATGGATGCAC
1 TGCATCGATGCAC
1895282 TATTAGGTGT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 15 0.33
22 15 0.33
23 15 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGG
Found at i:1895258 original size:21 final size:20
Alignment explanation
Indices: 1895206--1895300 Score: 75
Period size: 21 Copynumber: 4.5 Consensus size: 20
1895196 GACCTTTTGC
*
1895206 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTC-A-G-GTGT
* *
1895229 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCA-GGTGT
*
1895250 ATCGATGCACATTCAAGGATGA
1 ATCGATGCACATTC-AGG-TGT
*
1895272 ATGGATGCACTATT-AGGTGT
1 ATCGATGCAC-ATTCAGGTGT
1895292 ATCGATGCA
1 ATCGATGCA
1895301 TTAAGCACAA
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
20 10 0.17
21 20 0.34
22 14 0.24
23 15 0.25
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (20 bp):
ATCGATGCACATTCAGGTGT
Found at i:1899157 original size:21 final size:19
Alignment explanation
Indices: 1899124--1899165 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
1899114 AGCTTATTTT
1899124 CATTTTTCAATTTTGAAACAA
1 CATTTTTCAATTTT-AAA-AA
1899145 CATTTTT-ATATTTTAAAAA
1 CATTTTTCA-ATTTTAAAAA
1899164 CA
1 CA
1899166 ATATCTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 12 0.60
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (19 bp):
CATTTTTCAATTTTAAAAA
Found at i:1902701 original size:85 final size:85
Alignment explanation
Indices: 1902447--1903135 Score: 858
Period size: 85 Copynumber: 8.1 Consensus size: 85
1902437 GAAATATTGG
* * * *
1902447 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGATTTCGATTACACTCAAC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
* **
1902512 TCAAAAGCACATTGAATTTA
66 TCAAAGGCACATCAAATTTA
* * * *
1902532 CAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAG
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACACTCAG
* *
1902597 CTCAAAGGCATATCCAATTTA
65 CTCAAAGGCACATCAAATTTA
* * * *
1902618 CAGTATAACTCAATGCGAGAAGGGTTATCTGTCAACCAAGACCTTTGAGTTCGATTACACTCATC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
*
1902683 TCAAAGGCGCATCAAATTTA
66 TCAAAGGCACATCAAATTTA
* *
1902703 CAGCATAACTCAAGGCGATAAGGGTAATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
*
1902768 TTAAAGGCACATCAAATTTA
66 TCAAAGGCACATCAAATTTA
* * * *
1902788 CAGCATAGCTCAAGGCGAGAAGGGCTATTTGTCAACCAAGACCTTTGAGTTCGATTACACTCAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
*
1902853 TCAAAGGAACATCAAATTTA
66 TCAAAGGCACATCAAATTTA
* * * *
1902873 CAGCATAGCTCAAGGCGAGAAGTGATATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAG
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACACTCAG
* * * *
1902938 CTCAATGGAATATCCAATTTA
65 CTCAAAGGCACATCAAATTTA
* * * *
1902959 CAGCATAACTCAAGGCGAGAAGGGTTATCTATCAGCTAAGACCTTCGAGTTCGATTACATTCAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
* *
1903024 TCATAA-GCATATCAAAATTA
66 TCA-AAGGCACATCAAATTTA
* * * * * * ** * *
1903044 CAGTATAAATTAAGGCGAGAAGGGTTATCTGTCAACAAATACCTTCGAGTTTGATCCCATTTAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
* **
1903109 TCAAGGGCATGTCAAATTTA
66 TCAAAGGCACATCAAATTTA
*
1903129 AAGCATA
1 CAGCATA
1903136 GCTTAATCGA
Statistics
Matches: 532, Mismatches: 68, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
84 1 0.00
85 380 0.71
86 151 0.28
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (85 bp):
CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
TCAAAGGCACATCAAATTTA
Found at i:1903076 original size:341 final size:341
Alignment explanation
Indices: 1902447--1903094 Score: 1001
Period size: 341 Copynumber: 1.9 Consensus size: 341
1902437 GAAATATTGG
*
1902447 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGATTTCGATTACACTCAAC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAAC
* ** * *
1902512 TCAAAAGCACATTGAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCT
66 TCAAAAGAACATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAAGACCT
* * *
1902577 TCGAGTTCGATTACACTCAGCTCAAAGGCATATCCAATTTACAGTATAACTCAATGCGAGAAGGG
131 TCGAGTTCGATTACACTCAGCTCAAAGGAATATCCAATTTACAGCATAACTCAAGGCGAGAAGGG
* * * * *
1902642 TTATCTGTCAACCAAGACCTTTGAGTTCGATTACACTCATCTCAAAGGCGCATCAAATTTACAGC
196 TTATCTATCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAAATTACAGC
* * *
1902707 ATAACTCAAGGCGATAAGGGTAATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGCTTAA
261 ATAAATCAAGGCGAGAAGGGTAATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTTAA
1902772 AGGCACATCAAATTTA
326 AGGCACATCAAATTTA
* * *
1902788 CAGCATAGCTCAAGGCGAGAAGGGCTATTTGTCAACCAAGACCTTTGAGTTCGATTACACTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAAC
* *
1902853 TCAAAGGAACATCAAATTTACAGCATAGCTCAAGGCGAGAAGTGATATCTGTCAACAAAAGACCT
66 TCAAAAGAACATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAAGACCT
*
1902918 TCGAGTTCGATTACACTCAGCTCAATGGAATATCCAATTTACAGCATAACTCAAGGCGAGAAGGG
131 TCGAGTTCGATTACACTCAGCTCAAAGGAATATCCAATTTACAGCATAACTCAAGGCGAGAAGGG
* * * *
1902983 TTATCTATCAGCTAAGACCTTCGAGTTCGATTACATTCAGCTCATAA-GCATATCAAAATTACAG
196 TTATCTATCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCA-AAGGCACATCAAAATTACAG
* * * *
1903047 TATAAATTAAGGCGAGAAGGGTTATCTGTCAACAAATACCTTCGAGTT
260 CATAAATCAAGGCGAGAAGGGTAATCTGTCAACAAAGACCTTCGAGTT
1903095 TGATCCCATT
Statistics
Matches: 275, Mismatches: 31, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
341 273 0.99
342 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (341 bp):
CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAAC
TCAAAAGAACATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAAGACCT
TCGAGTTCGATTACACTCAGCTCAAAGGAATATCCAATTTACAGCATAACTCAAGGCGAGAAGGG
TTATCTATCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAAATTACAGC
ATAAATCAAGGCGAGAAGGGTAATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTTAA
AGGCACATCAAATTTA
Found at i:1903112 original size:256 final size:254
Alignment explanation
Indices: 1902447--1903138 Score: 907
Period size: 256 Copynumber: 2.7 Consensus size: 254
1902437 GAAATATTGG
* * * *
1902447 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTCGATTTCGATTACACTCAAC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
**
1902512 TCAAAAGCACATTGAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCT
66 TC-AAAGCACATCAAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAAC-AAAGACCT
* * * *
1902577 TCGAGTTCGATTACACTCAGCTCAAAGGCATATCCAATTTACAGTATAACTCAATGCGAGAAGGG
129 TCGAGTTCGATTACACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGG
* * * * **
1902642 TTATCTGTCAACCAAGACCTTTGAGTTCGATTACACTCATCTCAAAGGCGCATCAAATTTA
194 ATATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGAACATCAAATTTA
* *
1902703 CAGCATAACTCAAGGCGATAAGGGTAATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
* * * *
1902768 TTAAAGGCACATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATTTGTCAACCAAGACCTT
66 TCAAA-GCACATCAAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAGACCTT
* * * *
1902833 TGAGTTCGATTACACTCAGCTCAAAGGAACATCAAATTTACAGCATAGCTCAAGGCGAGAAGTGA
130 CGAGTTCGATTACACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGA
* * *
1902898 TATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAATGGAATATCCAATTTA
195 TATCTGTCAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGAACATCAAATTTA
* * * *
1902959 CAGCATAACTCAAGGCGAGAAGGGTTATCTATCAGCTAAGACCTTCGAGTTCGATTACATTCAGC
1 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
* * ** * * *
1903024 TCATAAGCATATCAAAATTACAGTATAAATTAAGGCGAGAAGGGTTATCTGTCAACAAATACCTT
66 TCA-AAGCACATCAAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAGACCTT
* ** * * * * *
1903089 CGAGTTTGATCCCATTTAGCTCAAGGGCATGTCAAATTTAAAGCATAGCT
130 CGAGTTCGATTACACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCT
1903139 TAATCGACAA
Statistics
Matches: 376, Mismatches: 57, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
255 78 0.21
256 296 0.79
257 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (254 bp):
CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGC
TCAAAGCACATCAAATTTACAGTATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAGACCTTC
GAGTTCGATTACACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGAT
ATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGAACATCAAATTTA
Found at i:1903750 original size:2 final size:2
Alignment explanation
Indices: 1903745--1903770 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1903735 CTTTTTTTAT
1903745 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1903771 GTATGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1903850 original size:38 final size:35
Alignment explanation
Indices: 1903815--1903885 Score: 90
Period size: 34 Copynumber: 2.0 Consensus size: 35
1903805 ATAATATACT
1903815 TTTTAAAAACCAATTTTTGAAAATATATA-ATATATAG
1 TTTTAAAAA-C-A-TTTTGAAAATATATATATATATAG
* *
1903852 TTTTGAAAACATTTTGAATATATATATATATATA
1 TTTTAAAAACATTTTGAAAATATATATATATATA
1903886 TATATAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 14 0.45
35 8 0.26
36 1 0.03
37 8 0.26
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (35 bp):
TTTTAAAAACATTTTGAAAATATATATATATATAG
Found at i:1903859 original size:23 final size:23
Alignment explanation
Indices: 1903829--1903903 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
1903819 AAAAACCAAT
1903829 TTTTGAAAATATATAATATATAG
1 TTTTGAAAATATATAATATATAG
* *
1903852 TTTTGAAAACATTTTGAATATATA-
1 TTTTGAAAATA-TAT-AATATATAG
* *
1903876 TATAT-ATATATATATAATATATAG
1 T-TTTGA-AAATATATAATATATAG
1903900 TTTT
1 TTTT
1903904 TTAAAACAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
23 20 0.50
24 7 0.17
25 13 0.32
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.48
Consensus pattern (23 bp):
TTTTGAAAATATATAATATATAG
Found at i:1903876 original size:2 final size:2
Alignment explanation
Indices: 1903869--1903898 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1903859 AACATTTTGA
1903869 AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1903899 GTTTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1903936 original size:48 final size:48
Alignment explanation
Indices: 1903837--1903937 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
1903827 ATTTTTGAAA
1903837 ATATATAATATATAGTTTTGAAAACATTTTGAATATATATATATATAT
1 ATATATAATATATAGTTTTGAAAACATTTTGAATATATATATATATAT
* *
1903885 ATATATAATATATAGTTTTTTAAAACAGTTTTTGGAA-ATGTATATAT-TAT
1 ATATATAATATATAG-TTTTGAAAACA--TTTT-GAATATATATATATATAT
1903935 ATA
1 ATA
1903938 GTTTTTGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
48 15 0.32
49 10 0.21
50 6 0.13
51 13 0.28
52 3 0.06
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.47
Consensus pattern (48 bp):
ATATATAATATATAGTTTTGAAAACATTTTGAATATATATATATATAT
Found at i:1903936 original size:87 final size:90
Alignment explanation
Indices: 1903808--1903971 Score: 212
Period size: 86 Copynumber: 1.9 Consensus size: 90
1903798 AAGTCATATA
1903808 ATATACTTTTTAAAAACCAATTTTTGAAAATATATAATATATAG-TTTTG-AAA-ACA-TTTTGA
1 ATATACTTTTTAAAAACCAATTTTTGAAAATATATAATATATAGTTTTTGAAAAGACATTTTTGA
* *
1903869 ATATATATATATATATATATATAAT
66 AAACATATATATATATATATATAAT
* * * * *
1903894 ATATAGTTTTTTAAAA-CAGTTTTTGGAAATGTATATATTATATAGTTTTTGAAAAGACATTTTT
1 ATATACTTTTTAAAAACCAATTTTT-GAAA-ATATATAATATATAGTTTTTGAAAAGACATTTTT
1903958 GAAAACATATATAT
64 GAAAACATATATAT
1903972 GGTTTTTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 7 0.11
86 18 0.28
87 13 0.20
88 5 0.08
89 3 0.05
90 3 0.05
91 16 0.25
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (90 bp):
ATATACTTTTTAAAAACCAATTTTTGAAAATATATAATATATAGTTTTTGAAAAGACATTTTTGA
AAACATATATATATATATATATAAT
Found at i:1903969 original size:40 final size:38
Alignment explanation
Indices: 1903885--1904042 Score: 132
Period size: 39 Copynumber: 4.2 Consensus size: 38
1903875 ATATATATAT
* * * *
1903885 ATATATAATATATAGTTTTTTAAAACAGTTTTTGGAAAT
1 ATATATATTATATAGTTTTTAAAAACA-TTTTTGAAAAC
*
1903924 GTATATATTATATAGTTTTTGAAAAGACATTTTTGAAAAC
1 ATATATATTATATAGTTTTT-AAAA-ACATTTTTGAAAAC
* *
1903964 ----ATA-TATATGGTTTTT-AAAACA-TCTTGAAAAC
1 ATATATATTATATAGTTTTTAAAAACATTTTTGAAAAC
*
1903995 TTTTATATATTATATAGTTTTTGAAAAAACATTTTTGAAAAC
1 --ATATATATTATATAGTTTTT--AAAAACATTTTTGAAAAC
1904037 ATATAT
1 ATATAT
1904043 GGTTTTTAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
31 9 0.09
32 3 0.03
33 3 0.03
35 11 0.11
36 3 0.03
37 3 0.03
38 11 0.11
39 18 0.19
40 17 0.18
41 9 0.09
42 9 0.09
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.44
Consensus pattern (38 bp):
ATATATATTATATAGTTTTTAAAAACATTTTTGAAAAC
Found at i:1904009 original size:123 final size:127
Alignment explanation
Indices: 1903745--1904010 Score: 295
Period size: 122 Copynumber: 2.1 Consensus size: 127
1903735 CTTTTTTTAT
1903745 TATATATATATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAAT
1 TATATATATATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAAT
* * *
1903810 ATACTTTTTAAAAACCAATTTTTGAAAATATATAATATATAGTTTTGAAAACATTTTGAATA
66 ATACTTTTTAAAAACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAAAA
* * * *
1903872 TATATATATATATATATATA-ATATA-TA-G-TTTTTTAAAACAGTTTTTGGAAATGT-ATATAT
1 TATATATATATATATATATATATATAGTATGATTTTTGAAAAC-GGTTTTCGAAAAGTCATATA-
* * *
1903932 TATATAGTTTTTGAAAAGA-C-ATTTTTG-AAA-ACAT-ATATATGGTTTTTAAAACATCTTGAA
64 -ATATACTTTTT-AAAA-ACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAA
1903992 AA
126 AA
*
1903994 CT-TTTATATAT-TATATA
1 -TATATATATATATATATA
1904011 GTTTTTGAAA
Statistics
Matches: 122, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
121 6 0.05
122 32 0.26
123 19 0.16
124 15 0.12
125 19 0.16
126 10 0.08
127 21 0.17
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (127 bp):
TATATATATATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAAT
ATACTTTTTAAAAACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAAAA
Found at i:1904009 original size:125 final size:128
Alignment explanation
Indices: 1903744--1904010 Score: 286
Period size: 125 Copynumber: 2.1 Consensus size: 128
1903734 TCTTTTTTTA
1903744 TTATATATATATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAA
1 TTATATAT-TATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAA
* * *
1903809 TATACTTTTTAAAAACCAATTTTTGAAAATATATAATATATAGTTTTGAAAACATTTTGAATAT
65 TATACTTTTTAAAAACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAAAAT
* * * * *
1903873 ATATATA-TATATATATATA-ATATA-TA-G-TTTTTTAAAACAGTTTTTGGAAATGT-ATATAT
1 TTATATATTATATATATATATATATAGTATGATTTTTGAAAAC-GGTTTTCGAAAAGTCATATA-
* * *
1903932 TATATAGTTTTTGAAAAGA-C-ATTTTTG-AAA-ACAT-ATATATGGTTTTTAAAACATCTTGAA
64 -ATATACTTTTT-AAAA-ACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAA
1903992 AACTT
126 AA--T
1903997 TTATATATTATATA
1 TTATATATTATATA
1904011 GTTTTTGAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
122 24 0.20
123 18 0.15
124 22 0.19
125 25 0.21
126 10 0.08
127 13 0.11
129 6 0.05
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.45
Consensus pattern (128 bp):
TTATATATTATATATATATATATATAGTATGATTTTTGAAAACGGTTTTCGAAAAGTCATATAAT
ATACTTTTTAAAAACCAATTTTTGAAAATACATAATATATAGTTTTGAAAACATCTTGAAAAT
Found at i:1904055 original size:71 final size:72
Alignment explanation
Indices: 1903925--1904092 Score: 284
Period size: 71 Copynumber: 2.3 Consensus size: 72
1903915 TTTGGAAATG
*
1903925 TATATATTATATAGTTTTTGAAAAGACATTTTTGAAAACATATATATGGTTTTTAAAACATCTTG
1 TATATATTATATAGTTTTTGAAAAAACATTTTTGAAAACA-ATATATGGTTTTTAAAACATCTTG
1903990 AAAACTTT
65 AAAACTTT
*
1903998 TATATATTATATAGTTTTTGAAAAAACATTTTTGAAAAC-ATATATGGTTTTTAAAACATTTTGA
1 TATATATTATATAGTTTTTGAAAAAACATTTTTGAAAACAATATATGGTTTTTAAAACATCTTGA
*
1904062 ACACTTT
66 AAACTTT
*
1904069 TATATAATATATAGTTTTTGAAAA
1 TATATATTATATAGTTTTTGAAAA
1904093 TATATAAATT
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
71 53 0.58
73 38 0.42
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (72 bp):
TATATATTATATAGTTTTTGAAAAAACATTTTTGAAAACAATATATGGTTTTTAAAACATCTTGA
AAACTTT
Found at i:1904097 original size:24 final size:23
Alignment explanation
Indices: 1904069--1904116 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 23
1904059 TGAACACTTT
1904069 TATAT-AATATATAGTTTTTGAAAA
1 TATATAAAT-TATAG-TTTTGAAAA
1904093 TATATAAATTATAGTTTTGAAAA
1 TATATAAATTATAGTTTTGAAAA
1904116 T
1 T
1904117 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.43
24 10 0.43
25 3 0.13
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (23 bp):
TATATAAATTATAGTTTTGAAAA
Found at i:1904114 original size:23 final size:24
Alignment explanation
Indices: 1904069--1904116 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
1904059 TGAACACTTT
1904069 TATATAATATATAGTTTTTGAAAA
1 TATATAATATATAGTTTTTGAAAA
1904093 TATATAA-ATTATAG-TTTTGAAAA
1 TATATAATA-TATAGTTTTTGAAAA
1904116 T
1 T
1904117 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (24 bp):
TATATAATATATAGTTTTTGAAAA
Found at i:1904151 original size:44 final size:44
Alignment explanation
Indices: 1904092--1904194 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 44
1904082 GTTTTTGAAA
*
1904092 ATATATAAATTATAGTTTTGAAAATTAT-TTTTAAAAAAGTATAT
1 ATATATATATTATAGTTTTGAAAATTATATTTTAAAAAA-TATAT
* *
1904136 ATATATATATTATAGTTTTGAAAATTATATTTTGAAATATATAT
1 ATATATATATTATAGTTTTGAAAATTATATTTTAAAAAATATAT
*
1904180 ATATATTTATATATA
1 ATATATATAT-TATA
1904195 TATATATTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
44 41 0.77
45 12 0.23
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (44 bp):
ATATATATATTATAGTTTTGAAAATTATATTTTAAAAAATATAT
Found at i:1904179 original size:2 final size:2
Alignment explanation
Indices: 1904172--1904239 Score: 120
Period size: 2 Copynumber: 34.5 Consensus size: 2
1904162 ATATTTTGAA
*
1904172 AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT -T AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1904213 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1904240 ATTTATTTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 62 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1904179 original size:14 final size:14
Alignment explanation
Indices: 1904098--1904172 Score: 55
Period size: 15 Copynumber: 5.1 Consensus size: 14
1904088 GAAAATATAT
1904098 AAATTATAGTTTTGA
1 AAATTATA-TTTTGA
*
1904113 AAATTAT-TTTTAAA
1 AAATTATATTTT-GA
* *
1904127 AAAGTATATATAT-A
1 AAATTATAT-TTTGA
*
1904141 TATATTATAGTTTTGA
1 -AAATTATA-TTTTGA
1904157 AAATTATATTTTGA
1 AAATTATATTTTGA
1904171 AA
1 AA
1904173 TATATATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
13 4 0.09
14 16 0.34
15 23 0.49
16 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (14 bp):
AAATTATATTTTGA
Found at i:1905744 original size:32 final size:33
Alignment explanation
Indices: 1905698--1905771 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 33
1905688 GCCAAACGAC
* *
1905698 AAAAAT-TGTATCATAAAGACAAAATTATTAG-
1 AAAAATGTGAATCATAAAGAAAAAATTATTAGA
1905729 AAAAATGTGAATCATAAAGAAAAAATTATTAGA
1 AAAAATGTGAATCATAAAGAAAAAATTATTAGA
1905762 AAAAATGTGA
1 AAAAATGTGA
1905772 TATAAGAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 6 0.15
32 23 0.59
33 10 0.26
ACGTcount: A:0.58, C:0.04, G:0.12, T:0.26
Consensus pattern (33 bp):
AAAAATGTGAATCATAAAGAAAAAATTATTAGA
Found at i:1907125 original size:15 final size:15
Alignment explanation
Indices: 1907096--1907138 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
1907086 AATTTTAACC
*
1907096 TTAAACCCATTAATATT
1 TTAAACCCAAT-A-ATT
1907113 TTAAAACCCAATAATT
1 TT-AAACCCAATAATT
1907129 TTAAACCCAA
1 TTAAACCCAA
1907139 ATAAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 8 0.33
16 5 0.21
17 3 0.12
18 8 0.33
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAAACCCAATAATT
Found at i:1907141 original size:16 final size:16
Alignment explanation
Indices: 1907096--1907142 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
1907086 AATTTTAACC
1907096 TTAAACCCATTAAT-ATT
1 TTAAACCCA--AATAATT
1907113 TTAAAACCC-AATAATT
1 TT-AAACCCAAATAATT
1907129 TTAAACCCAAATAA
1 TTAAACCCAAATAA
1907143 AAAAATACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 9 0.33
16 10 0.37
17 2 0.07
18 6 0.22
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (16 bp):
TTAAACCCAAATAATT
Found at i:1907249 original size:10 final size:10
Alignment explanation
Indices: 1907234--1907268 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
1907224 ATTTTATGTT
1907234 TGTTCGTTTG
1 TGTTCGTTTG
1907244 TGTTCGTTTG
1 TGTTCGTTTG
1907254 TGTTCGTTTG
1 TGTTCGTTTG
1907264 TGTTC
1 TGTTC
1907269 TTTTACGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.00, C:0.11, G:0.29, T:0.60
Consensus pattern (10 bp):
TGTTCGTTTG
Found at i:1907278 original size:20 final size:20
Alignment explanation
Indices: 1907235--1907283 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1907225 TTTTATGTTT
**
1907235 GTTCGTTTGTGTTCGTTTGT
1 GTTCGTTTGTGTTCGTTTAC
*
1907255 GTTCGTTTGTGTTCTTTTAC
1 GTTCGTTTGTGTTCGTTTAC
*
1907275 GTTCTTTTG
1 GTTCGTTTG
1907284 CTTTTGTTCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.02, C:0.12, G:0.24, T:0.61
Consensus pattern (20 bp):
GTTCGTTTGTGTTCGTTTAC
Found at i:1908555 original size:16 final size:17
Alignment explanation
Indices: 1908523--1908555 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1908513 ACTGTAAATT
1908523 TGTCCCGAAGGACCACTA
1 TGTCCCGAA-GACCACTA
1908541 TGTCCCGAA-ACCACT
1 TGTCCCGAAGACCACT
1908556 CCTTAAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.18
Consensus pattern (17 bp):
TGTCCCGAAGACCACTA
Found at i:1914915 original size:60 final size:60
Alignment explanation
Indices: 1914788--1914928 Score: 167
Period size: 60 Copynumber: 2.4 Consensus size: 60
1914778 TAGTCAGGTG
* * ** * *
1914788 ATCATTGTGTAACTTTTAATAGTCGAGGGACTCAACAAAACATCATCCTATAATTGATGG
1 ATCATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACATCATCCTATAATCAAAGA
* **
1914848 ATCATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAATATTGTCCT-TCAATCAAAGA
1 ATCATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACATCATCCTAT-AATCAAAGA
* *
1914908 ATTATTTTATAACTTTTAATA
1 ATCATTTTGTAACTTTTAATA
1914929 ATCAATGAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
59 1 0.01
60 68 0.99
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (60 bp):
ATCATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACATCATCCTATAATCAAAGA
Found at i:1919141 original size:22 final size:23
Alignment explanation
Indices: 1919113--1919164 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
1919103 TCCCGAAGGA
1919113 CCACATAGG-TTGCACCAAAGTG
1 CCACATAGGTTTGCACCAAAGTG
* *
1919135 CCACATAGGTTTGCATCGAAGTG
1 CCACATAGGTTTGCACCAAAGTG
1919158 CCACATA
1 CCACATA
1919165 TTTTTCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
CCACATAGGTTTGCACCAAAGTG
Found at i:1923384 original size:16 final size:16
Alignment explanation
Indices: 1923365--1923395 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1923355 GAGATTTTCG
1923365 TAGTCAGAGAGTTCCA
1 TAGTCAGAGAGTTCCA
*
1923381 TAGTCAGAGCGTTCC
1 TAGTCAGAGAGTTCC
1923396 CTGATGTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (16 bp):
TAGTCAGAGAGTTCCA
Found at i:1927785 original size:21 final size:21
Alignment explanation
Indices: 1927761--1927864 Score: 88
Period size: 21 Copynumber: 5.0 Consensus size: 21
1927751 TTCTACGCGG
1927761 TCCTTCGAG-ATATATATGTGA
1 TCCTT-GAGAATATATATGTGA
* *
1927782 TCCTTGGGAACATATATGTGA
1 TCCTTGAGAATATATATGTGA
* * * *
1927803 TCCTTTAGGATATATATTTGG
1 TCCTTGAGAATATATATGTGA
*
1927824 TCCTTTG-GAATATATATGTGG
1 TCC-TTGAGAATATATATGTGA
*
1927845 TCCTTTG-GAACATATATGTG
1 TCC-TTGAGAATATATATGTG
1927865 GTCTTTTGGG
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.40
Consensus pattern (21 bp):
TCCTTGAGAATATATATGTGA
Found at i:1927887 original size:22 final size:21
Alignment explanation
Indices: 1927772--1927887 Score: 126
Period size: 21 Copynumber: 5.5 Consensus size: 21
1927762 CCTTCGAGAT
* *
1927772 ATATATGTGATCCTTGGGAAC
1 ATATATGTGGTCCTTTGGAAC
* *
1927793 ATATATGTGATCCTTTAGG-AT
1 ATATATGTGGTCCTTT-GGAAC
* *
1927814 ATATATTTGGTCCTTTGGAAT
1 ATATATGTGGTCCTTTGGAAC
1927835 ATATATGTGGTCCTTTGGAAC
1 ATATATGTGGTCCTTTGGAAC
* *
1927856 ATATATGTGGTCTTTTGGGAC
1 ATATATGTGGTCCTTTGGAAC
*
1927877 ATTCTATGTGG
1 A-TATATGTGG
1927888 CATTTCAGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
20 2 0.02
21 71 0.86
22 10 0.12
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.41
Consensus pattern (21 bp):
ATATATGTGGTCCTTTGGAAC
Found at i:1933474 original size:14 final size:14
Alignment explanation
Indices: 1933455--1933487 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
1933445 ATCAGCAGAT
1933455 GCAGAAGAAAGCAG
1 GCAGAAGAAAGCAG
1933469 GCAGAAGAAAGCAG
1 GCAGAAGAAAGCAG
1933483 GCAGA
1 GCAGA
1933488 GGAAGTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.36, T:0.00
Consensus pattern (14 bp):
GCAGAAGAAAGCAG
Found at i:1935851 original size:17 final size:17
Alignment explanation
Indices: 1935821--1935853 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1935811 ATAGAATGGA
1935821 CTCGACTCGAACTCGAG
1 CTCGACTCGAACTCGAG
1935838 CTCGAGCTCG-ACTCGA
1 CTCGA-CTCGAACTCGA
1935854 ATTTTTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (17 bp):
CTCGACTCGAACTCGAG
Found at i:1936166 original size:30 final size:30
Alignment explanation
Indices: 1936101--1936166 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
1936091 GAGCTGCTCA
* * *
1936101 CGAGCTTCAGTTCAGGATTTCGAGTTGAGT
1 CGAGCTTCAGTTCAGAATTTCGAATCGAGT
* * *
1936131 TGAGCTTCATTTCAGAATTTTGAATCGAGT
1 CGAGCTTCAGTTCAGAATTTCGAATCGAGT
1936161 CGAGCT
1 CGAGCT
1936167 CAGCAATACT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (30 bp):
CGAGCTTCAGTTCAGAATTTCGAATCGAGT
Found at i:1938998 original size:31 final size:32
Alignment explanation
Indices: 1938928--1939005 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 32
1938918 AAATTAAATA
* * *
1938928 AATAAAAAGTAAATGACAACAATTTAAATGGGC
1 AATAAAAATTAAATAACAACAA-TTAAATGAGC
*
1938961 -AT-AAAATTAAATAACAATAA-TAAATGAGC
1 AATAAAAATTAAATAACAACAATTAAATGAGC
*
1938990 AATAAAAATAAAATAA
1 AATAAAAATTAAATAA
1939006 AAAGTTAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 8 0.21
30 2 0.05
31 26 0.68
32 2 0.05
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.22
Consensus pattern (32 bp):
AATAAAAATTAAATAACAACAATTAAATGAGC
Found at i:1945844 original size:21 final size:21
Alignment explanation
Indices: 1945811--1945863 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
1945801 TATATGCTAT
*
1945811 GTTATGATGATATGATAAGAAA
1 GTTATGATGATAT-AAAAGAAA
1945833 -TTAT-ATGAATATAAAAGAAA
1 GTTATGATG-ATATAAAAGAAA
1945853 GTTATG-TGATA
1 GTTATGATGATA
1945864 AGATTTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (21 bp):
GTTATGATGATATAAAAGAAA
Found at i:1946492 original size:2 final size:2
Alignment explanation
Indices: 1946485--1946528 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
1946475 AGGAAAAATG
1946485 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1946525 AT AT
1 AT AT
1946529 TATGAAGATG
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1947028 original size:23 final size:23
Alignment explanation
Indices: 1946995--1947062 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
1946985 AATCTTATAT
1946995 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* * *
1947018 GGCACTACGGTGCAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
* *
1947041 GGCACTTTGGTGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
1947063 AGCTGTGGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.31
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Done.