Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009596.1 Hibiscus syriacus cultivar Beakdansim tig00116975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1846166
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 8
Found at i:5699 original size:8 final size:8
Alignment explanation
Indices: 5688--5736 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
5678 AAAAAGTTAG
5688 TAAAAAAA
1 TAAAAAAA
*
5696 TAAACAAA
1 TAAAAAAA
5704 TAAAAAAA
1 TAAAAAAA
**
5712 TAACGAAA
1 TAAAAAAA
*
5720 GAAAAAAA
1 TAAAAAAA
5728 TACAAAAAA
1 TA-AAAAAA
5737 CATGGTTAGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
8 26 0.81
9 6 0.19
ACGTcount: A:0.80, C:0.06, G:0.04, T:0.10
Consensus pattern (8 bp):
TAAAAAAA
Found at i:5709 original size:16 final size:17
Alignment explanation
Indices: 5688--5729 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
5678 AAAAAGTTAG
5688 TAAAAAAATAAAC-AAA
1 TAAAAAAATAAACGAAA
5704 TAAAAAAAT-AACGAAA
1 TAAAAAAATAAACGAAA
*
5720 GAAAAAAATA
1 TAAAAAAATA
5730 CAAAAAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.12
Consensus pattern (17 bp):
TAAAAAAATAAACGAAA
Found at i:6521 original size:12 final size:13
Alignment explanation
Indices: 6504--6532 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
6494 CTTAATTACA
6504 AAAATTAAAA-TT
1 AAAATTAAAATTT
6516 AAAATTAAAATTT
1 AAAATTAAAATTT
6529 AAAA
1 AAAA
6533 ATTCGATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:9122 original size:37 final size:36
Alignment explanation
Indices: 9069--9174 Score: 146
Period size: 33 Copynumber: 3.0 Consensus size: 36
9059 AAAATCAGGA
* *
9069 TCAGGTCGGGTTTTTTTAAGTTTGATATTCGGGTCG
1 TCAGGTCGGGGTTTTTTAAGTGTGATATTCGGGTCG
*
9105 CTCGGGTCGGGGTTTTTTAAGTGTGATATTC-GG--G
1 -TCAGGTCGGGGTTTTTTAAGTGTGATATTCGGGTCG
*
9139 TCAGGTCGAGGTTTTTTAAGTGTGATATTCGGGTCG
1 TCAGGTCGGGGTTTTTTAAGTGTGATATTCGGGTCG
9175 GGTTTAGGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
33 28 0.46
34 3 0.05
36 3 0.05
37 27 0.44
ACGTcount: A:0.14, C:0.11, G:0.34, T:0.41
Consensus pattern (36 bp):
TCAGGTCGGGGTTTTTTAAGTGTGATATTCGGGTCG
Found at i:9766 original size:16 final size:18
Alignment explanation
Indices: 9745--9785 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
9735 TCAGATTTAA
*
9745 ATTCTAATT-CTT-TCAT
1 ATTCTAATTACTTCACAT
9761 ATTCTAATTACTTCACAT
1 ATTCTAATTACTTCACAT
9779 ATTCTAA
1 ATTCTAA
9786 ATTGTCGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 3 0.14
18 10 0.45
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTCTAATTACTTCACAT
Found at i:13364 original size:20 final size:18
Alignment explanation
Indices: 13341--13377 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
13331 CACGGAATGT
13341 AAGATTACCGATGAGAATAA
1 AAGATTACC-ATGA-AATAA
13361 AAGATTACCATGAAATA
1 AAGATTACCATGAAATA
13378 GGATTATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (18 bp):
AAGATTACCATGAAATAA
Found at i:13559 original size:38 final size:36
Alignment explanation
Indices: 13524--13593 Score: 104
Period size: 37 Copynumber: 1.9 Consensus size: 36
13514 TACAAATTGT
*
13524 AAAATATTTATATATTTTTCTTTAAAAAATTAAATTC
1 AAAATATTTATATAATTTT-TTTAAAAAATTAAATTC
* *
13561 ATAATATTTATATAATTTTTTTATAAAATTAAA
1 AAAATATTTATATAATTTTTTTAAAAAATTAAA
13594 AATATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 13 0.43
37 17 0.57
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (36 bp):
AAAATATTTATATAATTTTTTTAAAAAATTAAATTC
Found at i:13950 original size:24 final size:24
Alignment explanation
Indices: 13918--13974 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
13908 GCCAACTAAA
*
13918 CATGAGAATGTGAGATTCTCATCC
1 CATGAGAATGTGAGATTCCCATCC
* *
13942 CATGGGAATGTGGGATTCCCATCC
1 CATGAGAATGTGAGATTCCCATCC
13966 CATGAGAAT
1 CATGAGAAT
13975 CTCACAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
CATGAGAATGTGAGATTCCCATCC
Found at i:14101 original size:11 final size:11
Alignment explanation
Indices: 14085--14109 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14075 AGGAAAAGCG
14085 GGTTAATATAC
1 GGTTAATATAC
14096 GGTTAATATAC
1 GGTTAATATAC
14107 GGT
1 GGT
14110 ATTACCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (11 bp):
GGTTAATATAC
Found at i:14802 original size:23 final size:23
Alignment explanation
Indices: 14771--14843 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
14761 ATAGGTAAAA
*
14771 ATATGATGTAATAGGTAGAGCTT
1 ATATAATGTAATAGGTAGAGCTT
* *
14794 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGAGCTT
*
14817 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGAGCTT
14840 ATAT
1 ATAT
14844 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGAGCTT
Found at i:15286 original size:23 final size:23
Alignment explanation
Indices: 15260--15332 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
15250 ATAGGTAAAA
* *
15260 ATATGATGTAATAAGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
15283 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
15306 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
15329 ATAT
1 ATAT
15333 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:15372 original size:489 final size:488
Alignment explanation
Indices: 14348--18634 Score: 7117
Period size: 488 Copynumber: 8.8 Consensus size: 488
14338 TTTTTACCTA
* *
14348 TTATCTTGTAAAATATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
* * *
14413 AATTTAAGGTTATCTTTTGAGTGAATTTTAATATATTAATTTAGTAATTATATGCGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
14478 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
*
14543 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
* *
14608 ACAATCAAATAATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGAA
261 ACAATCAAATAA-TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
*
14673 ACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAA
325 ACACTA-TAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
* *
14738 AAAATATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAGCTTATATAATGT
389 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
14803 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
454 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
14838 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
*
14903 ATTTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
14968 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
*
15033 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTATAAATAATATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
* * *
15098 ACAATCAAATAATTTTTTGTGCAAATTAAATTATTAAATTAATATTGTAGGTAGAAAACACGAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
15163 CACTATAAAAAAGATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAA
326 CACTATAAAAAA-ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAA
*
15228 AAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAAGTAGCGCTTATATAATGTA
390 AAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTA
15293 ATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
455 ATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
15327 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
15392 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
*
15457 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
15522 TTATGT-TTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT-AT-TTTTATAAAATATCAA
196 TTAT-TATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAA
*
15584 AACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAA
260 AACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
* *
15649 ACACTATAAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAA
325 ACACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAA
*
15714 AAGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTA
390 AAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG--C------------
*
15779 ATAGATAGCGTTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTAGTGC
441 -------GC--TTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
15836 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
15901 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
* *
15966 TTATTTTTTGCGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
*
16031 TTATGT-TTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAA
196 TTAT-TATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAA
*
16095 AACAATCAAATAATTTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGA
260 AACAATCAAATAA-TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
* *
16160 AACACTAT-AAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAA
324 AACACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
* * * *
16224 AAAGTATGGACACTTTCGATATAATAGATAAAAATATGATGTAATAGGTATCACTTATATAATGT
389 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
* *
16289 AATAGATAGTGTTTATATAATGTAATAGGTAGTGC
454 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* *
16324 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
*
16389 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGTGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
16454 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
16519 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
*
16584 ACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
*
16649 CACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAA
326 CACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAA
* *
16714 AGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAA
391 AGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAA
*
16779 TAGGTAGCGCTTATATAATGTAATAGGTAGTGC
456 TAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
16812 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGG-AAATATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
*
16876 AATTTAAGGTTATCTTTCGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
16941 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
*
17006 TTATTATTATCTTTGGTTAATAATGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
* *
17071 ACAATCAAATAATATTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
17136 CACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
326 CACTA-T-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
* *
17201 AAAGTATGGACACTTTCAATATAATAAGTAAAAATATGATGTAATAGGTAACGCTTATATAATGT
389 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
* * *
17266 AATAAGTAGCGTTTATATAATGTAATATGTAGTGT
454 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* * * *
17301 TTATATTATAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
*
17366 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
*
17431 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAAC--ATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
* *
17494 TCATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
17559 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
* *
17624 CACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCATTTTTATAAAA
326 CACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAA
* * **
17689 AGTATGGACACTTTCAATATAATAAGTAAAAATATGATGTAATAGGTAACATTTATATAATGTAA
391 AGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAA
17754 TAGGTAGCGTTTATATAATGTAATAGGTAGTGC
456 TAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
17787 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
* * *
17852 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGAAATTAATTTAGTAATTATAGGTGTCTAATGGT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
* *
17917 TTATTTTTTACGTTATGGCATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
* *
17982 TTATTATTATATTTGGTTAATATTGTTAAATTTAAATTTTAAATAATATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
* * *
18047 ACAATTAAATAATTTTTTGTGTAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATGAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
18112 CACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
326 CACTA-T-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
* * * *
18177 AAAGGATCGATACTTTACAATAT-ATCAGGTAAAAATATGATGTAATAGGTAACGCTTATATAAT
389 AAAGTATGGACACTTT-CAATATAAT-AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAAT
18241 GTAATAGGTAGC-----------------------GC
452 GTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* *
18255 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
* * ** **
18320 AATTTAAGGTTATCTTTTGAATGAGTTTTAAGATATCAATTTAGTAATTATCTGTATCTAATGAT
66 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
* * *
18385 TTATTTTTTATGTTACGATATATATTATCATTAAATTAAAAACAATAAACATATATATTACATAT
131 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
* * *
18450 TTATTATTATATTTGGTTAATATTGTTAAATTTAAATTGTAAATATTATTTTATAAAATATCAAA
196 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
*
18515 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAA
261 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
* *
18580 CACTATTAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCT
326 CACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCT
18635 ATTATATTAT
Statistics
Matches: 3610, Mismatches: 148, Indels: 102
0.94 0.04 0.03
Matches are distributed among these distances:
466 47 0.01
467 1 0.00
468 311 0.09
486 418 0.12
487 418 0.12
488 801 0.22
489 634 0.18
490 453 0.13
491 53 0.01
507 2 0.00
509 282 0.08
510 1 0.00
511 132 0.04
512 57 0.02
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (488 bp):
TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
CACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAA
AGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAA
TAGGTAGCGTTTATATAATGTAATAGGTAGTGC
Found at i:15777 original size:23 final size:23
Alignment explanation
Indices: 15746--15841 Score: 129
Period size: 23 Copynumber: 4.2 Consensus size: 23
15736 ATAGGTAAAA
* *
15746 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
* *
15769 ATATAATGTAATAGATAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
15792 ATATAATGTAATAAGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
15815 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
15838 ATAT
1 ATAT
15842 TGTAAAGTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:16288 original size:23 final size:23
Alignment explanation
Indices: 16257--16329 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
16247 ATAGATAAAA
*
16257 ATATGATGTAATAGGTA-TCACTT
1 ATATAATGTAATAGGTAGT-ACTT
* **
16280 ATATAATGTAATAGATAGTGTTT
1 ATATAATGTAATAGGTAGTACTT
*
16303 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTACTT
16326 ATAT
1 ATAT
16330 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTACTT
Found at i:16727 original size:22 final size:22
Alignment explanation
Indices: 16683--16727 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
16673 ATTACATAAC
*
16683 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACCTT
*
16705 TTTATAAAAAGTAT-GAACACTT
1 TTTAAAAAAAGTATCGAAC-CTT
16727 T
1 T
16728 CAATATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACCTT
Found at i:16776 original size:23 final size:23
Alignment explanation
Indices: 16745--16817 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
16735 ATAGGTAAAA
*
16745 ATATGATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
16768 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
16791 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
16814 ATAT
1 ATAT
16818 TGTAAAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:17297 original size:23 final size:23
Alignment explanation
Indices: 17234--17306 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
17224 ATAAGTAAAA
* * * *
17234 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAAGTAGCGTTT
17257 ATATAATGTAATAAGTAGCGTTT
1 ATATAATGTAATAAGTAGCGTTT
* *
17280 ATATAATGTAATATGTAGTGTTT
1 ATATAATGTAATAAGTAGCGTTT
17303 ATAT
1 ATAT
17307 TATAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAAGTAGCGTTT
Found at i:17603 original size:975 final size:975
Alignment explanation
Indices: 14348--18632 Score: 7069
Period size: 975 Copynumber: 4.4 Consensus size: 975
14338 TTTTTACCTA
* *
14348 TTATCTTGTAAAATATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT-GAAAACATT
* *
14413 AATTTAAGGTTATCTTTTGAGTGAATTTTAATATATTAATTTAGTAATTATATG-CGTCTAATGA
65 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA-GACGTCTAATGA
*
14477 TTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATA
129 TTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA-ATATATTACATA
*
14542 TTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAA
193 TTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAA
* *
14607 AACAATCAAATAATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGA
258 AACAATCAAATAA-TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
14672 AACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATA
322 AACACTATT-AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATA
* * *
14737 AAAAATATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAGCTTATATAATG
386 AAAAGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATG
14802 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
451 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
* *
14867 AAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTATTTTAAGGTTATCTTTTGAGTGAGTTTT
516 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
14932 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
581 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
14997 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAA
646 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAA
* *
15062 ATTTAAATTATAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATTAA
711 ATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAA
* * *
15127 ATTATTAAATTAATATTGTAGGTAGAAAACACGAAACACTATAAAAAAGATTGAAACATAAATTA
776 ATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATAAAAAAAATTGAAACATAAATTA
*
15192 CATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTA
841 CATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAAGTA
* * *
15257 AAAATATGATGTAATAAGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGT
906 AAAATATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGT
15322 AGTGC
971 AGTGC
15327 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTG-AAAACATT
*
15392 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGAT
65 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGAT
15457 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
130 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA-ATATATTACATAT
15522 TTATGT-TTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT-AT-TTTTATAAAATATCAA
194 TTAT-TATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAA
*
15584 AACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAA
258 AACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
* *
15649 ACACTATAAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAA
323 ACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAA
15714 AAGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTA
388 AAGTATGAACACTTTCAATATAATAGGTAAAAATATGATGT-A-A--TAG------------G--
*
15779 ATAGATAGCGTTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
435 -TAG-T-GC--TTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
*
15844 TAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAG
495 TAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
15909 GTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
560 GTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
* *
15974 TGCGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATGT-T
625 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTAT-TAT
*
16038 TATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCA
689 TATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCA
*
16103 AATAATTTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTAT
754 AATAA-TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTAT
* *
16168 --AAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTAT
818 AAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTAT
* * *
16231 GGACACTTTCGATATAAT-AGATAAAAATATGATGTAATAGGTATCACTTATATAATGTAAT-AG
883 GGACACTTTCAATATAATAAG-TAAAAATATGATGTAATAGGTAACGCTTATATAATGTAATAAG
*
16294 ATAGTGTTTATATAATGTAATAGGTAGTGC
947 -TAGCGTTTATATAATGTAATAGGTAGTGC
*
16324 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT-GAAAACATT
**
16389 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGTGTCTAATGAT
65 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGAT
*
16454 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
130 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA-ATATATTACATAT
16519 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
194 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
*
16584 ACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
259 ACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA
*
16649 CACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAA
324 CACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAA
16714 AGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAA
389 AGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAA
*
16779 TAGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAA
454 TAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAA
* *
16844 AGTGTCCATACTTTTTTCACTGTGG-AAATATTAATTTAAGGTTATCTTTCGAGTGAGTTTTAAG
519 AGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAG
16908 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATT
584 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATT
*
16973 AAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATAATGTTAAATT
649 AAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATT
* *
17038 TAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGTAAATGAAATT
714 TAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATT
17103 ATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACA
779 ATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TAAAAAAAATTGAAACATAAATTACA
17168 TAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAAGTAAA
843 TAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAAGTAAA
*
17233 AATATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATATGTAG
908 AATATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTAG
*
17298 TGT
973 TGC
* * *
17301 TTATATTATAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT-GAAAACATT
17366 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGAT
65 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGAT
17431 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAAC-ATATATTACATATT
130 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACAATATATTACATATT
* *
17495 CATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAA
195 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
17560 CAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
260 CAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
* *
17625 ACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCATTTTTATAAAAA
325 ACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAA
* * ****
17690 GTATGGACACTTTCAATATAATAAGTAAAAATATGATGTAATAGGTAACATTTATATAATGTAAT
390 GTATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAAT
17755 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
455 AGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAA
*
17820 GTGTCCATACTTTTTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
520 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
* * * * *
17885 AATTAATTTAGTAATTATAGGTGTCTAATGGTTTATTTTTTACGTTATGGCATATATTATTATTA
585 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTA
*
17950 AATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTT
650 AATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTT
* * *
18015 AAATTTTAAATAATATTTTATAAAATATCAAAACAATTAAATAATTTTTTGTGTAAATGAAATTA
715 AAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTA
*
18080 TTAAATTAACATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACAT
780 TTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TAAAAAAAATTGAAACATAAATTACAT
* * * *
18145 AACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAATAT-ATCAGGTAA
844 AACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT-CAATATAAT-AAGTAA
18209 AAATATGATGTAATAGGTAA--C-------------------GC--TTATATAATGTAATAGGTA
907 AAATATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTA
*
18251 GCGC
972 GTGC
*
18255 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAAACATT
1 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTG-AAAACATT
* * *
18320 AATTTAAGGTTATCTTTTGAATGAGTTTTAAGATATCAATTTAGTAATTATCTGTA--TCTAATG
65 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT-AG-ACGTCTAATG
* *
18383 ATTTATTTTTTATGTTACGATATATATTATCATTAAATTAAAAACAATAAACATATATATTACAT
128 ATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACA-ATATATTACAT
* * *
18448 ATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTGTAAATATTATTTTATAAAATATCA
192 ATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCA
*
18513 AAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAA
257 AAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
*
18578 AACACTATTAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATC
322 AACACTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATC
18633 CTATTATATT
Statistics
Matches: 3139, Mismatches: 119, Indels: 119
0.93 0.04 0.04
Matches are distributed among these distances:
953 1 0.00
954 185 0.06
955 1 0.00
956 192 0.06
974 56 0.02
975 652 0.21
976 491 0.16
977 376 0.12
978 10 0.00
979 231 0.07
980 4 0.00
983 1 0.00
991 1 0.00
994 3 0.00
995 3 0.00
996 5 0.00
997 375 0.12
998 314 0.10
999 238 0.08
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (975 bp):
TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAACATTA
ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGATT
TATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACAATATATTACATATTT
ATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAC
AATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA
CTATTAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAG
TATGAACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAATA
GGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAG
TGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGAT
ATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAA
ATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTA
AATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTAT
TAAATTAATATTGTAGGTGGAAAACATGAAACACTATAAAAAAAATTGAAACATAAATTACATAA
CTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAAGTAAAAAT
ATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTAGTGC
Found at i:17783 original size:23 final size:23
Alignment explanation
Indices: 17720--17792 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
17710 ATAAGTAAAA
* * *
17720 ATATGATGTAATAGGTAACATTT
1 ATATAATGTAATAGGTAGCGTTT
17743 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
17766 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGTTT
17789 ATAT
1 ATAT
17793 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:18173 original size:22 final size:22
Alignment explanation
Indices: 18148--18192 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18138 ATTACATAAC
* *
18148 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGGATCGATACTT
*
18170 TTTATAAAAAGGATCGATACTT
1 TTTAAAAAAAGGATCGATACTT
18192 T
1 T
18193 ACAATATATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGGATCGATACTT
Found at i:18242 original size:23 final size:23
Alignment explanation
Indices: 18211--18260 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
18201 TCAGGTAAAA
*
18211 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAGGTAACGCTT
*
18234 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAACGCTT
18257 ATAT
1 ATAT
18261 TGTAAAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAACGCTT
Found at i:18564 original size:468 final size:466
Alignment explanation
Indices: 16768--18634 Score: 2515
Period size: 468 Copynumber: 3.9 Consensus size: 466
16758 GGTAGTGCTT
* *
16768 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATC
1 ATATAATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTATC
* * * * *
16833 CTTTTTATAAAAGTGTCCATACTTTTTTCACTGT-GGAAATATTAATTTAAGGTTATCTTTCGAG
66 CTTTTTATAAAAGTGTCCATACTTATTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAA
* * ** **
16897 TGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTAT
131 TGAGTTTTAAGAAATCAATTTAGTAATTATAGGTATCTAATGATTTATTTTTTACGTTACGACAT
* *
16962 ATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAAT
196 ATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAAT
* * *
17027 AATGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTG
261 ATTGTTAAATTTAAATTGTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTG
* * * *
17092 TAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAA
326 CAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATAAAACACTATT--AAAAAATTAAAA
* * *
17157 CATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT-CAAT
389 CATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAAT
*
17221 ATAAT-AAGTAAAA
454 AT-ATCAGGTAAAA
* * *
17234 ATATGATGTAATAGGTAACGCTTATATAATGTAATAAGTAGCGTTTATATAATGTAATATGTAGT
1 ATATAATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCG--------CT-T-ATA--T--T
* * *
17299 GTTTATATTATAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTAGAAAACA
52 G---------TAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTAGAAAACA
* * * ***
17364 TTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATG
108 TTAATTTAAGGTTATCTTTTGAATGAGTTTTAAGAAATCAATTTAGTAATTATAGGTATCTAATG
* *
17429 ATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAAC--ATATATTACAT
173 ATTTATTTTTTACGTTACGACATATATTATCATTAAATTAAAAACAATAAACATATATATTACAT
* * * *
17492 ATTCATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCA
238 ATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTGTAAATAATATTTTATAAAATATCA
* *
17557 AAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
303 AAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATAA
* * * *
17622 AACACTATAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCATTTTTATAA
368 AACACTATTAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT-A
* * * *
17687 AAAGTATGGACACTTTCAATA-TAATAAGTAAAAATATGATGTAATAGGTAACATTT
432 AAA--A-GG--A---TCGATACT--T---T-ACAATAT-A--T--CAGGTAA-A--A
* * *
17743 ATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATC
1 ATATAATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTATC
* *
17808 CTTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAG
66 CTTTTTATAAAAGTGTCCATACTTATTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAA
* * * * *
17873 TGAGTTTTAAGAAATTAATTTAGTAATTATAGGTGTCTAATGGTTTATTTTTTACGTTATGGCAT
131 TGAGTTTTAAGAAATCAATTTAGTAATTATAGGTATCTAATGATTTATTTTTTACGTTACGACAT
*
17938 ATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAAT
196 ATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAAT
* *
18003 ATTGTTAAATTTAAATTTTAAATAATATTTTATAAAATATCAAAACAATTAAATAATTTTTTGTG
261 ATTGTTAAATTTAAATTGTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTG
* * *
18068 TAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAA
326 CAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATAAAACACTATT--AAAAAATTAAAA
18133 CATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAAT
389 CATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAAT
18198 ATATCAGGTAAAA
454 ATATCAGGTAAAA
*
18211 ATATGATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTATC
1 ATATAATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTATC
18276 CTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAAACATTAATTTAAGGTTATCTTTTGA
66 CTTTTTATAAAAGTGTCCATACTTATTTCACTGTAG-AAAACATTAATTTAAGGTTATCTTTTGA
* ** * *
18340 ATGAGTTTTAAGATATCAATTTAGTAATTATCTGTATCTAATGATTTATTTTTTATGTTACGATA
130 ATGAGTTTTAAGAAATCAATTTAGTAATTATAGGTATCTAATGATTTATTTTTTACGTTACGACA
18405 TATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAA
195 TATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAA
*
18470 TATTGTTAAATTTAAATTGTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
260 TATTGTTAAATTTAAATTGTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGT
*
18535 GCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAATTAAAAC
325 GCAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATAAAACACTATTAAAAAATTAAAAC
18600 ATAAATTACATAACTTTAAAAAAAGTATCGATCCT
390 ATAAATTACATAACTTTAAAAAAAGTATCGATCCT
18635 ATTATATTAT
Statistics
Matches: 1266, Mismatches: 81, Indels: 108
0.87 0.06 0.07
Matches are distributed among these distances:
466 86 0.07
467 1 0.00
468 351 0.28
470 1 0.00
471 6 0.00
473 1 0.00
474 1 0.00
475 2 0.00
476 9 0.01
477 1 0.00
478 1 0.00
480 3 0.00
481 5 0.00
482 1 0.00
484 1 0.00
486 217 0.17
487 5 0.00
488 286 0.23
489 50 0.04
490 172 0.14
492 1 0.00
494 1 0.00
495 5 0.00
496 1 0.00
497 1 0.00
499 4 0.00
500 1 0.00
501 7 0.01
503 1 0.00
506 5 0.00
507 1 0.00
509 38 0.03
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (466 bp):
ATATAATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTATC
CTTTTTATAAAAGTGTCCATACTTATTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAA
TGAGTTTTAAGAAATCAATTTAGTAATTATAGGTATCTAATGATTTATTTTTTACGTTACGACAT
ATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAAT
ATTGTTAAATTTAAATTGTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTG
CAAATGAAATTATTAAATTAACATTGTAGGTGGAAAACATAAAACACTATTAAAAAATTAAAACA
TAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTACAATAT
ATCAGGTAAAA
Found at i:23354 original size:74 final size:75
Alignment explanation
Indices: 23260--23409 Score: 275
Period size: 74 Copynumber: 2.0 Consensus size: 75
23250 ATGAATTTAA
* *
23260 GTGGATATTTCGCAGGAGAAATAGAAGATTTAATAGTGTTAAGAGCAAGTAAAGCAATAGTTAGC
1 GTGGATATTTCGCAGGAGAAATAGAAGATTCAATAGTGTTAAGACCAAGTAAAGCAATAGTTAGC
23325 ACTTAA-AAT
66 ACTTAATAAT
23334 GTGGATATTTCGCAGGAGAAATAGAAGATTCAATAGTGTTAAGACCAAGTAAAGCAATAGTTAGC
1 GTGGATATTTCGCAGGAGAAATAGAAGATTCAATAGTGTTAAGACCAAGTAAAGCAATAGTTAGC
23399 ACTTAATAAT
66 ACTTAATAAT
23409 G
1 G
23410 ATAATAATAA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 69 0.95
75 4 0.05
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (75 bp):
GTGGATATTTCGCAGGAGAAATAGAAGATTCAATAGTGTTAAGACCAAGTAAAGCAATAGTTAGC
ACTTAATAAT
Found at i:30021 original size:76 final size:75
Alignment explanation
Indices: 29927--30142 Score: 308
Period size: 76 Copynumber: 2.9 Consensus size: 75
29917 ATTTTAAATA
*
29927 TTATATTTTATCTTTGTTTTAAGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAAGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGATTTA
*
29992 GGATATTATTT
66 GAATATTA-TT
* *
30003 TTATATTTTATCTTTGTTTTAAGTATTTTAATTTAAATAGGTTTTAGTATTTTAATTAGGATTTA
1 TTATATTTTATCTTTGTTTTAAGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGATTTA
30068 GAATATTATT
66 GAATATTATT
* * * * * * *
30078 TTAAATATTATTTTTGTTTTAGGTATTTTAGTTTAAATA-ATTTTAAGTGTTTTAATTAGGATTT
1 TTATATTTTATCTTTGTTTTAAGTATTTTAGTTTAAATAGGTTTT-AGTATTTTAATTAAGATTT
30142 A
65 A
30143 AGATGTTTTA
Statistics
Matches: 128, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
74 4 0.03
75 55 0.43
76 69 0.54
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.58
Consensus pattern (75 bp):
TTATATTTTATCTTTGTTTTAAGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGATTTA
GAATATTATT
Found at i:30056 original size:24 final size:24
Alignment explanation
Indices: 29942--30059 Score: 80
Period size: 24 Copynumber: 4.7 Consensus size: 24
29932 TTTTATCTTT
*
29942 GTTTTAAGTATTTTAGTTTAAATAG
1 GTTTT-AGTATTTTAATTTAAATAG
*
29967 GTTTTAGTATTTTAA-TTAAGTTTTAG
1 GTTTTAGTATTTTAATTTAA---ATAG
* ** **
29993 GATATTA-T-TTTTATATTTTATCTTT
1 G-TTTTAGTATTTTA-A-TTTAAATAG
30018 GTTTTAAGTATTTTAATTTAAATAG
1 GTTTT-AGTATTTTAATTTAAATAG
30043 GTTTTAGTATTTTAATT
1 GTTTTAGTATTTTAATT
30060 AGGATTTAGA
Statistics
Matches: 71, Mismatches: 12, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
23 4 0.06
24 24 0.34
25 23 0.32
26 8 0.11
27 9 0.13
28 3 0.04
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (24 bp):
GTTTTAGTATTTTAATTTAAATAG
Found at i:30863 original size:21 final size:22
Alignment explanation
Indices: 30828--30880 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
30818 TTTTAATTCA
* * *
30828 TTATTTATTACTTTATTATT-T
1 TTATTTTTTAATTTATAATTAT
*
30849 TTCTTTTTTAATTTATAATTAT
1 TTATTTTTTAATTTATAATTAT
30871 TTATTTTTTA
1 TTATTTTTTA
30881 TACATTTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (22 bp):
TTATTTTTTAATTTATAATTAT
Found at i:35187 original size:114 final size:115
Alignment explanation
Indices: 35040--35268 Score: 442
Period size: 114 Copynumber: 2.0 Consensus size: 115
35030 AAGTCAAATC
*
35040 AAATAAAAAAAATTAATTTTTTGAGTCGAGTAAAATTTTACTCACTACTACTTTATCATCATTAA
1 AAATAAAAAAAATTAATTTTTTGAGTCGAGTAAAATTTTACTCACCACTACTTTATCATCATTAA
35105 TTTCTTCAAAATTTTCCCTACTTCATGTGATTTTTTGCTAAAATTTAATT
66 TTTCTTCAAAATTTTCCCTACTTCATGTGATTTTTTGCTAAAATTTAATT
35155 AAAT-AAAAAAATTAATTTTTTGAGTCGAGTAAAATTTTACTCACCACTACTTTATCATCATTAA
1 AAATAAAAAAAATTAATTTTTTGAGTCGAGTAAAATTTTACTCACCACTACTTTATCATCATTAA
35219 TTTCTTCAAAATTTTCCCTACTTCATGTGATTTTTTGCTAAAATTTAATT
66 TTTCTTCAAAATTTTCCCTACTTCATGTGATTTTTTGCTAAAATTTAATT
35269 TAATTATAAT
Statistics
Matches: 113, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
114 109 0.96
115 4 0.04
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.44
Consensus pattern (115 bp):
AAATAAAAAAAATTAATTTTTTGAGTCGAGTAAAATTTTACTCACCACTACTTTATCATCATTAA
TTTCTTCAAAATTTTCCCTACTTCATGTGATTTTTTGCTAAAATTTAATT
Found at i:47098 original size:27 final size:29
Alignment explanation
Indices: 47068--47134 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 29
47058 AATTTATTCT
47068 ATTTAAAACATAAAATTTAA-AT-TTATA
1 ATTTAAAACATAAAATTTAATATCTTATA
* ** *
47095 ATTTTAATTATAAAATTTAATATCTTATT
1 ATTTAAAACATAAAATTTAATATCTTATA
47124 ATATTAAAACA
1 AT-TTAAAACA
47135 ATTAATTATT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
27 17 0.57
28 2 0.07
29 6 0.20
30 5 0.17
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTTAAAACATAAAATTTAATATCTTATA
Found at i:50471 original size:33 final size:32
Alignment explanation
Indices: 50415--50480 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
50405 CATTTAATGG
50415 TATTATTCTACCTTCCTTAAATGGATGAACTT
1 TATTATTCTACCTTCCTTAAATGGATGAACTT
* * *
50447 TATTATTTTACTTTCTTATAAATGGATGAACTT
1 TATTATTCTACCTTCCT-TAAATGGATGAACTT
50480 T
1 T
50481 TCTTAGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.47
33 16 0.53
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (32 bp):
TATTATTCTACCTTCCTTAAATGGATGAACTT
Found at i:56392 original size:18 final size:18
Alignment explanation
Indices: 56369--56416 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
56359 AAATTGTTCT
* *
56369 TATTATATATTTGTATAA
1 TATTATATATTTGGAAAA
*
56387 TATTAT-TAGTTGGAAAA
1 TATTATATATTTGGAAAA
56404 TATTTATATATTT
1 TA-TTATATATTT
56417 TCTTTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 10 0.42
18 10 0.42
19 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
TATTATATATTTGGAAAA
Found at i:57297 original size:17 final size:16
Alignment explanation
Indices: 57258--57313 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
57248 CTGCAAAAAA
*
57258 ATTAATTAAA-TACAAT
1 ATTAAATAAATTA-AAT
*
57274 ATTAAATAATTTAAAT
1 ATTAAATAAATTAAAT
57290 ACTTAAATAAATTAAAT
1 A-TTAAATAAATTAAAT
57307 ATTAAAT
1 ATTAAAT
57314 TTAATAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 18 0.51
17 17 0.49
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTAAATAAATTAAAT
Found at i:57509 original size:27 final size:27
Alignment explanation
Indices: 57471--57531 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
57461 TTAAACCTAA
*
57471 GACGCGCCATAGGGGGCGCGCCTTTCT
1 GACGCGTCATAGGGGGCGCGCCTTTCT
57498 GACGCGTCATAGGGGGCGCGCCTTTCT
1 GACGCGTCATAGGGGGCGCGCCTTTCT
57525 GACGCGT
1 GACGCGT
57532 GTCAGATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.11, C:0.31, G:0.38, T:0.20
Consensus pattern (27 bp):
GACGCGTCATAGGGGGCGCGCCTTTCT
Found at i:58177 original size:24 final size:23
Alignment explanation
Indices: 58137--58182 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
58127 CTTAATTTGA
* *
58137 TTTTAAATTTTTGAATAAATAAAT
1 TTTTAAATTTCTAAAT-AATAAAT
58161 TTTTAAATTTCTAAATAATAAA
1 TTTTAAATTTCTAAATAATAAA
58183 CATATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTTAAATTTCTAAATAATAAAT
Found at i:58252 original size:22 final size:22
Alignment explanation
Indices: 58190--58245 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
58180 AAACATATAC
* *
58190 ATATTTAA-TTAATTATATATAA
1 ATATTTAATTTACTAATA-ATAA
*
58212 ATATTTAGTTTACTAATAATAA
1 ATATTTAATTTACTAATAATAA
*
58234 ATTTTTAATTTA
1 ATATTTAATTTA
58246 TAAATAAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 21 0.75
23 7 0.25
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTTAATTTACTAATAATAA
Found at i:58253 original size:19 final size:19
Alignment explanation
Indices: 58198--58254 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
58188 ACATATTTAA
*
58198 TTAA-TTATATATAAATAT
1 TTAATTTATAAATAAATAT
* *
58216 TTAGTTTACTAATAATAAATTT
1 TTAATTTA-T-A-AATAAATAT
58238 TTAATTTATAAATAAAT
1 TTAATTTATAAATAAAT
58255 CTAAAAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
18 3 0.10
19 10 0.32
20 2 0.06
21 2 0.06
22 14 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAATTTATAAATAAATAT
Found at i:58354 original size:35 final size:34
Alignment explanation
Indices: 58287--58354 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 34
58277 ATTCATATTA
* *
58287 TTTTATTTAATTATTTTACTTCTGCTAATAAAAC
1 TTTTATTTAATTATTTTAATTCTGATAATAAAAC
* * *
58321 TTTTAATTTGATTATTTTAATTTTGATACTAAAA
1 TTTT-ATTTAATTATTTTAATTCTGATAATAAAA
58355 TTGTTTCGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 4 0.14
35 24 0.86
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.54
Consensus pattern (34 bp):
TTTTATTTAATTATTTTAATTCTGATAATAAAAC
Found at i:61740 original size:28 final size:28
Alignment explanation
Indices: 61700--61762 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
61690 GCTCACGTAA
*
61700 CCTTCTCC-CTCCCCCGTGCAACCGTCT
1 CCTTCCCCTCTCCCCCGTGCAACCGTCT
** *
61727 CCTTCCCCTCTCCCTTGTGCAACCTTCT
1 CCTTCCCCTCTCCCCCGTGCAACCGTCT
61755 CC-TCCCCT
1 CCTTCCCCT
61763 GCAACCTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 13 0.42
28 18 0.58
ACGTcount: A:0.06, C:0.56, G:0.08, T:0.30
Consensus pattern (28 bp):
CCTTCCCCTCTCCCCCGTGCAACCGTCT
Found at i:61770 original size:28 final size:28
Alignment explanation
Indices: 61715--61770 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
61705 TCCCTCCCCC
**
61715 GTGCAACCGTCTCCTTCCCCTCTCCCTT
1 GTGCAACCGTCTCCTTCCCCTCAACCTT
*
61743 GTGCAACCTTCTCC-TCCCCTGCAACCTT
1 GTGCAACCGTCTCCTTCCCCT-CAACCTT
61771 TCCAAAGGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.11, C:0.48, G:0.11, T:0.30
Consensus pattern (28 bp):
GTGCAACCGTCTCCTTCCCCTCAACCTT
Found at i:63504 original size:28 final size:27
Alignment explanation
Indices: 63456--63509 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63446 AATAATAGTT
* * *
63456 TGAGGTTTTCAATGGGGTTTTGAGGTG
1 TGAGGGTTTCAAAGGGGTTTTAAGGTG
63483 TGAGGGTTTCAAAGGGGTTTTTAAGGT
1 TGAGGGTTTCAAAGGGG-TTTTAAGGT
63510 TCTGATTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.19, C:0.04, G:0.39, T:0.39
Consensus pattern (27 bp):
TGAGGGTTTCAAAGGGGTTTTAAGGTG
Found at i:63574 original size:21 final size:21
Alignment explanation
Indices: 63548--63593 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
63538 TTAGGTTCGA
*
63548 TCAGAAGGGGTGCGTACATGG
1 TCAGAAGGGGTGCGTACATGC
*
63569 TCAGAAGGGGTGCGTGCATGC
1 TCAGAAGGGGTGCGTACATGC
63590 TCAG
1 TCAG
63594 GCGAGGTGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (21 bp):
TCAGAAGGGGTGCGTACATGC
Found at i:70289 original size:20 final size:22
Alignment explanation
Indices: 70266--70305 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
70256 ATTTTAATAT
70266 TTTA-ATTAAGATT-TATTTTC
1 TTTATATTAAGATTATATTTTC
*
70286 TTTATTTTAAGATTATATTT
1 TTTATATTAAGATTATATTT
70306 ACATTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (22 bp):
TTTATATTAAGATTATATTTTC
Found at i:70315 original size:22 final size:21
Alignment explanation
Indices: 70271--70315 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
70261 AATATTTTAA
* *
70271 TTAAGATTTATTTTCTTTATT
1 TTAAGATTTATTTACATTATT
*
70292 TTAAGATTATATTTACATTGTT
1 TTAAGATT-TATTTACATTATT
70314 TT
1 TT
70316 TAGGATTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (21 bp):
TTAAGATTTATTTACATTATT
Found at i:77727 original size:122 final size:122
Alignment explanation
Indices: 77461--77704 Score: 323
Period size: 122 Copynumber: 2.0 Consensus size: 122
77451 TTTTGTTGAG
* *
77461 TCAAAACAAGACCATTGTCATCAGAAAACACCTCAATGCCAAGGAAAAAATTAAGAGAGCCAAGA
1 TCAAAACAAGACAATTATCATCAGAAAACACCTCAATGCCAAGGAAAAAATTAAGAGAGCCAAGA
* ** ***** *
77526 TCTTTTAAAGAAAATCGAGCATACAACTTTTCAATAACACATTGTATTTTTGTTGAG
66 TCTTTTAAAGAAAATCGAGCATACAACTTTTCAATAACACATTGCACCTCACCAGAC
* * *
77583 TCAAAACAAGACCATTGTCATCAGAACACACCTCAATGCCAAGGAAAAAATT-AGAGAGCCAAGA
1 TCAAAACAAGACAATTATCATCAGAAAACACCTCAATGCCAAGGAAAAAATTAAGAGAGCCAAGA
* *
77647 TCTTTTAAAGAAAA-CGAGCATGCAACTTTTCAATAACACA-TGCACCTCACCAGCC
66 TCTTTTAAAGAAAATCGAGCATACAACTTTTCAATAACACATTGCACCTCACCAGAC
77702 TCA
1 TCA
77705 CTTCCGTCAC
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
119 8 0.07
120 25 0.23
121 26 0.24
122 51 0.46
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (122 bp):
TCAAAACAAGACAATTATCATCAGAAAACACCTCAATGCCAAGGAAAAAATTAAGAGAGCCAAGA
TCTTTTAAAGAAAATCGAGCATACAACTTTTCAATAACACATTGCACCTCACCAGAC
Found at i:91015 original size:576 final size:578
Alignment explanation
Indices: 88911--91218 Score: 4214
Period size: 577 Copynumber: 4.0 Consensus size: 578
88901 CCAAATTTTA
*
88911 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTATCTCT-TTTGAGGTAATATAGTCACAT
1 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
* *
88975 GATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATAAAGGCCTTAAGTGCA
66 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
*
89040 AGACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
131 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
* *
89105 TTTAAAGATATGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAATAAATAAATG
196 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
89170 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
261 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
*
89235 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGGCT
326 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
89300 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
391 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
89365 AGTTATTTTTTTT-ATTCAACCCTAACCAATGATCACCCCCACACTGGGGGCAAAGGTGAAGGAA
456 AGTTATTTTTTTTGATTCAACCCTAACCAATGATCACCCCCACACTGGGGGCAAAGGTGAAGGAA
* *
89429 ATATGCTCGCAGGAGTGAAGACCATCAATTTATATCAAATGAGAAATAAAAAAGAACC
521 ATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAACC
* **
89487 ACACTACATCTATCTAAGTCACCAAAGTCATACCTTTACCAATCTTTGAGGTAATATAGTCACAT
1 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
89552 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
66 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
89617 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
131 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
* *
89682 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTAGAAGCAAGAAGAAGAA-AAATAAATA
196 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
*
89746 AAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
261 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
89811 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
326 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
*
89876 CTATTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
391 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
89941 AGTTATTTTTTTTGATTCAACCCTAACCAATGATCACCCCCCACACTGGGGGCAAAGGTGAAGGA
456 AGTTATTTTTTTTGATTCAACCCTAACCAATGATCA-CCCCCACACTGGGGGCAAAGGTGAAGGA
* *
90006 AATATGCTCGCAGGAGTGAATACCAGCAATTCATATCAAATGAGAAATAAAAAGGAACC
520 AATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAACC
* *
90065 ACACTATATCTATCTGAGTCACCAAAGTTATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
1 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
90130 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAA-TGCA
66 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
*
90194 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATAATAGATAAACTT
131 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
90259 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
196 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
90324 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
261 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
* * *
90389 GAATATTCATCCCCCTGGGATACCTCTTTTTTCAAGGACTTATGGGAATGAAATGATTAATGACT
326 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
90454 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
391 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
90519 AGTTATTTTTTTTGATTCAACCCTAACCAATGATCACCCCCACACTGGGGGCAAAGGTGAAGGAA
456 AGTTATTTTTTTTGATTCAACCCTAACCAATGATCACCCCCACACTGGGGGCAAAGGTGAAGGAA
90584 ATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAACC
521 ATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAACC
90642 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
1 ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
*
90707 CATTATCTTCTCAGATAC-AAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCGTAAGTGCA
66 CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
* * *
90771 AAACTTTTATTTGTCCGTAAGTCTTACTGTAAGAAGATGTGAGA-CGGACATCATAGATAAACTT
131 AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
* *
90835 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATACTCGAAGTAAGAAGAAGAAGAAATAAATG
196 TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
90900 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
261 GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
* * *
90965 GAATATTCATCCCCCTGGGATACCTATTTTTGCAAGGACTTCTAGGAATGAAATGATTAACGGCT
326 GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
*
91030 CTCTTTCAATATACATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
391 CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
*
91095 AATTATTTTTTTCTGATTCAACCCTAACCAATGATCACCCCCACACTGGGGGGCAAAGGTGAAGG
456 AGTTATTTTTTT-TGATTCAACCCTAACCAATGATCACCCCCACACT-GGGGGCAAAGGTGAAGG
* *
91160 AAATATGCTCGCATGAGTGAATACCATCAATTCATATCAAATGAGAAATAAAAAGGAAC
519 AAATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAAC
91219 AACAAGGTAT
Statistics
Matches: 1674, Mismatches: 51, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
576 572 0.34
577 591 0.35
578 511 0.31
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (578 bp):
ACACTACATCTATCTGAGTCACCAAAGTCATACCTTTACCTCTCTTTGAGGTAATATAGTCACAT
CATTATCTTCTCAGATACAAAACCCTTATTTTTTATGCCAATAAAACATGAAGGCCTTAAGTGCA
AAACTTTTATTTGTCCGTAAGTCTTCCTGTAAGAAGATATGAGATGGGACATCATAGATAAACTT
TTTAAAGATAAGCTCAAATAATTGAAGCATACCATGCTCGAAGCAAGAAGAAGAAGAAATAAATG
GAATGATTTAAATAATTCTATCATGCATTAATTACATTATTTTCATGTAAATAAAAGTTAATCTT
GAATATTCATCCCCCTGGGATACCTCTTTTTGCAAGGACTTCTGGGAATGAAATGATTAACGACT
CTCTTTCAATATCCATTCACAAAAAGATAAAAAGATATATCCCTTATTGTCCCCATTTGAGCCTG
AGTTATTTTTTTTGATTCAACCCTAACCAATGATCACCCCCACACTGGGGGCAAAGGTGAAGGAA
ATATGCTCGCAGGAGTGAAGACCATCAATTCATATCAAATGAGAAATAAAAAGGAACC
Found at i:91454 original size:21 final size:20
Alignment explanation
Indices: 91408--91457 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
91398 AAAAAAAGAG
*
91408 AAAAAAAGAAGAGAAAGAGA
1 AAAAAAAGAAGAGAAAGACA
*
91428 AGAAAAAGAGAGAGAAA-ACA
1 AAAAAAAGA-AGAGAAAGACA
*
91448 ACAAAAAGAA
1 AAAAAAAGAA
91458 AATAAAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 18 0.69
21 7 0.27
ACGTcount: A:0.74, C:0.04, G:0.22, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAGAGAAAGACA
Found at i:91456 original size:31 final size:29
Alignment explanation
Indices: 91395--91472 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 29
91385 ATTCATATTC
* * *
91395 GAGAAAAAAAGAGAAAAAAAGAAGAGAAA
1 GAGAAAAAAAGAGAAAAAAACAACAAAAA
*
91424 GAGAAGAAAAAGAGAGAGAAAACAACAAAAA
1 GAGAA-AAAAAGAGA-AAAAAACAACAAAAA
* *
91455 GAAAATAAAAAGGGAAAA
1 GAGAA-AAAAAGAGAAAA
91473 TAAATAGAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 5 0.13
30 11 0.28
31 23 0.59
ACGTcount: A:0.73, C:0.03, G:0.23, T:0.01
Consensus pattern (29 bp):
GAGAAAAAAAGAGAAAAAAACAACAAAAA
Found at i:91489 original size:16 final size:16
Alignment explanation
Indices: 91468--91518 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
91458 AATAAAAAGG
91468 GAAAATAAATAGAAAA
1 GAAAATAAATAGAAAA
*
91484 GAAAATAAAAAGAGAAA
1 GAAAATAAATAGA-AAA
91501 GAGAAA-AAAT-GAAAA
1 GA-AAATAAATAGAAAA
91516 GAA
1 GAA
91519 GAAAGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 1 0.03
15 5 0.16
16 14 0.45
17 8 0.26
18 3 0.10
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.08
Consensus pattern (16 bp):
GAAAATAAATAGAAAA
Found at i:91509 original size:21 final size:21
Alignment explanation
Indices: 91485--91532 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
91475 AATAGAAAAG
91485 AAAATAAAAAG-AGAAAGAGAA
1 AAAATAAAAAGAAGAAAGA-AA
*
91506 AAAATGAAAAGAAGAAAGAAA
1 AAAATAAAAAGAAGAAAGAAA
91527 ACAAAT
1 A-AAAT
91533 CAAGTACTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAATAAAAAGAAGAAAGAAA
Found at i:91515 original size:22 final size:20
Alignment explanation
Indices: 91485--91532 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
91475 AATAGAAAAG
91485 AAAATAAAA-AGAGAAAGAGAA
1 AAAATAAAAGA-AGAAAGA-AA
91506 AAAATGAAAAGAAGAAAGAAA
1 AAAAT-AAAAGAAGAAAGAAA
91527 ACAAAT
1 A-AAAT
91533 CAAGTACTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.33
22 15 0.62
23 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (20 bp):
AAAATAAAAGAAGAAAGAAA
Found at i:91518 original size:13 final size:12
Alignment explanation
Indices: 91480--91527 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
91470 AAATAAATAG
*
91480 AAAAGAAAATAA
1 AAAAGAAAAGAA
91492 AAAGAGAAAGAGAA
1 AAA-AGAAA-AGAA
91506 AAAATGAAAAGAA
1 AAAA-GAAAAGAA
*
91519 GAAAGAAAA
1 AAAAGAAAA
91528 CAAATCAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 8 0.26
13 13 0.42
14 10 0.32
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:93936 original size:20 final size:20
Alignment explanation
Indices: 93911--93956 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
93901 TCCAAAATTG
* *
93911 GTAAGTCCTTCGGGCTAGCA
1 GTAAGTCCTTCGAGCCAGCA
* *
93931 GTAAGTCTTTCGAGCCATCA
1 GTAAGTCCTTCGAGCCAGCA
93951 GTAAGT
1 GTAAGT
93957 TTTTCGAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (20 bp):
GTAAGTCCTTCGAGCCAGCA
Found at i:94239 original size:20 final size:20
Alignment explanation
Indices: 94210--94264 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
94200 GAGCAAGATG
* *
94210 ATAAGTCCTTCGGGCCATCT
1 ATAAGACCTTTGGGCCATCT
*
94230 ATAAGACCTTTGAGCCATCT
1 ATAAGACCTTTGGGCCATCT
94250 ATAAGACCTTTGGGC
1 ATAAGACCTTTGGGC
94265 AAGATGCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (20 bp):
ATAAGACCTTTGGGCCATCT
Found at i:94679 original size:30 final size:29
Alignment explanation
Indices: 94632--94690 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
94622 CTTACAAGCT
*
94632 CAAATTTTTGAATCTTATTAGACGATGTG
1 CAAATTTTTGAATCTTATTAGACAATGTG
94661 CAAATATTTATGAA-CTTATTAGACAATGTG
1 CAAAT-TTT-TGAATCTTATTAGACAATGTG
94691 AAAGGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 18 0.67
31 4 0.15
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (29 bp):
CAAATTTTTGAATCTTATTAGACAATGTG
Found at i:94700 original size:30 final size:31
Alignment explanation
Indices: 94635--94705 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
94625 ACAAGCTCAA
* * *
94635 ATTTTTGAATCTTATTAGACGATGTGCAAAT
1 ATTTATGAATCTTATTAGACAATGTGCAAAG
94666 ATTTATGAA-CTTATTAGACAATGTG-AAAGG
1 ATTTATGAATCTTATTAGACAATGTGCAAA-G
*
94696 ATTTACGAAT
1 ATTTATGAAT
94706 AATCTTTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 23 0.68
31 8 0.24
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (31 bp):
ATTTATGAATCTTATTAGACAATGTGCAAAG
Found at i:95114 original size:16 final size:14
Alignment explanation
Indices: 95079--95105 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95069 TATTATGTAT
95079 AATATATTTTTAAA
1 AATATATTTTTAAA
95093 AATATATTTTTAA
1 AATATATTTTTAA
95106 TAATTTATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AATATATTTTTAAA
Found at i:95264 original size:30 final size:28
Alignment explanation
Indices: 95205--95304 Score: 73
Period size: 30 Copynumber: 3.5 Consensus size: 28
95195 TTAAAAAATC
*
95205 TTTTAAATTTTAATAATATTTTTATTAT
1 TTTTAAATTTTAATAATATTTTTAGTAT
*
95233 TTTTAAATTATATAATTAA-ATTTTTCGTATT
1 TTTTAAATT-T-TAA-TAATATTTTTAGTA-T
* *
95264 TATATTTAA-TTTATTGAATATTTTTA-TA-
1 T-T-TTAAATTTTAAT-AATATTTTTAGTAT
95292 TTTTAAATTTTAA
1 TTTTAAATTTTAA
95305 ATTTTTGAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 19
0.68 0.09 0.23
Matches are distributed among these distances:
26 4 0.07
27 5 0.09
28 10 0.18
29 2 0.04
30 17 0.30
31 12 0.21
32 2 0.04
33 4 0.07
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTTAAATTTTAATAATATTTTTAGTAT
Found at i:96102 original size:22 final size:21
Alignment explanation
Indices: 96056--96103 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
96046 AAAGAACCTG
96056 AAAAAAGTAGGAAAACAAAAT
1 AAAAAAGTAGGAAAACAAAAT
96077 AAAAAAGTAGGAAAACAAAAT
1 AAAAAAGTAGGAAAACAAAAT
96098 AAAAAA
1 AAAAAA
96104 TAGAGCTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.08
Consensus pattern (21 bp):
AAAAAAGTAGGAAAACAAAAT
Found at i:100886 original size:2 final size:2
Alignment explanation
Indices: 100881--100917 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
100871 TATGCTGATT
100881 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100918 GTTTGTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:102237 original size:150 final size:151
Alignment explanation
Indices: 101966--102271 Score: 571
Period size: 150 Copynumber: 2.0 Consensus size: 151
101956 TTACTGCAAG
101966 GTAATCCTAGACAATACGTTGAAGTACTACGCATGTCTCGTGAATCATTTGTCCGACTATGCACA
1 GTAATCCTAGACAATACGTTGAAGTACTACGCATGTCTCGTGAATCATTTGTCCGACTATGCACA
102031 CTTTTTAGAGTAAATTACTCGTTAAAAGATAGTAAACACGTATCGGTTGAG-AAAAAATGGCTAT
66 CTTTTTAGAGTAAATTACTCGTTAAAAGATAGTAAACACGTATCGGTTGAGAAAAAAATGGCTAT
102095 GTTTTTTATGATGATCGGTCA
131 GTTTTTTATGATGATCGGTCA
*
102116 GTAATCCTAGACAATGCGTTGAAGTACTACGCATGTCTCGTGAATCATTTGTCCGACTATGCACA
1 GTAATCCTAGACAATACGTTGAAGTACTACGCATGTCTCGTGAATCATTTGTCCGACTATGCACA
* *
102181 TTTTTTAGAGTAAATTACTCGTTAAAAGATAGTAAACACGTATCGGTTGAGGAAAAAATGGCTAT
66 CTTTTTAGAGTAAATTACTCGTTAAAAGATAGTAAACACGTATCGGTTGAGAAAAAAATGGCTAT
102246 GTTTTTTATGATGATCGGTCA
131 GTTTTTTATGATGATCGGTCA
102267 -TAATC
1 GTAATC
102272 AACGATACGT
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
150 119 0.78
151 34 0.22
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (151 bp):
GTAATCCTAGACAATACGTTGAAGTACTACGCATGTCTCGTGAATCATTTGTCCGACTATGCACA
CTTTTTAGAGTAAATTACTCGTTAAAAGATAGTAAACACGTATCGGTTGAGAAAAAAATGGCTAT
GTTTTTTATGATGATCGGTCA
Found at i:103272 original size:31 final size:31
Alignment explanation
Indices: 103234--103292 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
103224 AGTTGTATGG
*
103234 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATTTCAGTATTGCAAAACTAAA
103265 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTGCAAAACT
103293 CTTTTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTGCAAAACTAAA
Found at i:105686 original size:14 final size:14
Alignment explanation
Indices: 105667--105697 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
105657 ATCATAGTAT
*
105667 TATTATTATTATTA
1 TATTATTATTAATA
105681 TATTATTATTAATA
1 TATTATTATTAATA
105695 TAT
1 TAT
105698 ATATATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTATTATTAATA
Found at i:107118 original size:24 final size:24
Alignment explanation
Indices: 107046--107119 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
107036 CTAGATACAA
* * *
107046 ATTTTATTATTATATTTTTACTAT
1 ATTTTATTTTTATATGTTTAATAT
* *
107070 AGTTTGAATTTTA-ATTGTTTAAATAT
1 A-TTTTATTTTTATA-TGTTT-AATAT
107096 ATTTTATTTTTATATGTTTAATAT
1 ATTTTATTTTTATATGTTTAATAT
107120 TTTAAATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
24 7 0.18
25 26 0.67
26 6 0.15
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.62
Consensus pattern (24 bp):
ATTTTATTTTTATATGTTTAATAT
Found at i:107149 original size:32 final size:32
Alignment explanation
Indices: 107099--107161 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
107089 TAAATATATT
* *
107099 TTATTTTTATATGTTTAATATTT-TAAATTAAA
1 TTATTATTATATGATTAAT-TTTATAAATTAAA
*
107131 TTATTATTATTTGATTAATTTTATAAATTAA
1 TTATTATTATATGATTAATTTTATAAATTAA
107162 TAATAATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 3 0.11
32 24 0.89
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (32 bp):
TTATTATTATATGATTAATTTTATAAATTAAA
Found at i:107190 original size:2 final size:2
Alignment explanation
Indices: 107183--107207 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107173 TATTTTTATT
107183 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
107208 TATTTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:116391 original size:20 final size:22
Alignment explanation
Indices: 116345--116402 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
116335 TACATATACA
*
116345 CTCTTCAAAGATGCTAGATTCT
1 CTCTTCAAAGATGATAGATTCT
116367 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
* *
116389 CTTTTCGAAGATGA
1 CTCTTCAAAGATGA
116403 AAGCTTTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (22 bp):
CTCTTCAAAGATGATAGATTCT
Found at i:117254 original size:73 final size:73
Alignment explanation
Indices: 117079--117328 Score: 347
Period size: 73 Copynumber: 3.4 Consensus size: 73
117069 TTATTTCCAA
* * * *
117079 CATCCGTAAGCCCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGA--TCTT--A
*
117144 AACCCTCAGGGT
62 AAGCCTCAGGGT
* * * * *
117156 CATGTGTAAGAACTACAATGCATGATGTTCTCAAAAAGCCTTCGAGAGCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
117221 CTCAGGGT
66 CTCAGGGT
*
117229 CATTTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
117294 CTCAGGGT
66 CTCAGGGT
* *
117302 CATCTGTAAGCCCTACAGTGCAAGATG
1 CATCTGTAAGACCTACAGTGCATGATG
117329 ATAAGACCTC
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
73 104 0.67
75 3 0.02
77 48 0.31
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (73 bp):
CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
CTCAGGGT
Found at i:117743 original size:124 final size:122
Alignment explanation
Indices: 117454--117778 Score: 424
Period size: 123 Copynumber: 2.6 Consensus size: 122
117444 ATCAGTGTTG
* * *
117454 CCAGAGAAAGTTCATAATGAGAAGAATTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAG
1 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATAAGAAGAA
* * * *
117519 CTTGTTCAACCTTTTGCATGACTCTATCACAGAAGGAGATAGATCAATACCAACTTTT
66 CTTGTTCAACCTTTTACATGACTCTATCACAAAAAGAGATAGAGCAATA-CAACTTTT
*
117577 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAGGAAGTTCATAATAAGAAGAA
1 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATAAGAAGAA
* *
117642 CTTGTTCAACCTTTTACTTGACTCCATTTC-CAAAAAGAGATAGAGC-AT-CAGAGCTATTT
66 CTTGTTCAACCTTTTACATGACT-C-TATCACAAAAAGAGATAGAGCAATACA-A-CT-TTT
* * * * *
117701 CCAG-GTGAATTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATAAGAATA
1 CCAGAG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATAAGAAGA
117765 ACTTGTTCAACCTT
65 ACTTGTTCAACCTT
117779 GCATTGATTC
Statistics
Matches: 180, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
121 2 0.01
122 1 0.01
123 87 0.48
124 87 0.48
125 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (122 bp):
CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATAAGAAGAA
CTTGTTCAACCTTTTACATGACTCTATCACAAAAAGAGATAGAGCAATACAACTTTT
Found at i:118611 original size:18 final size:18
Alignment explanation
Indices: 118588--118623 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
118578 GTCACCAGCA
118588 TAGCTTTGGTGACTCACC
1 TAGCTTTGGTGACTCACC
118606 TAGCTTTGGTGACTCACC
1 TAGCTTTGGTGACTCACC
118624 GAGCCTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (18 bp):
TAGCTTTGGTGACTCACC
Found at i:119603 original size:24 final size:25
Alignment explanation
Indices: 119530--119604 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
119520 GCTAGATACA
* * *
119530 AGTTTTATTATTATATTTTTACTAT
1 AGTTTTATTTTTATATGTTTAATAT
* *
119555 AGTTTGAATTTTA-ATTGTTTAAATAT
1 AGTTTTATTTTTATA-TGTTT-AATAT
119581 A-TTTTATTTTTATATGTTTAATAT
1 AGTTTTATTTTTATATGTTTAATAT
119605 TTTAAATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
24 6 0.15
25 28 0.70
26 6 0.15
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.61
Consensus pattern (25 bp):
AGTTTTATTTTTATATGTTTAATAT
Found at i:119634 original size:32 final size:32
Alignment explanation
Indices: 119584--119646 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
119574 TAAATATATT
* *
119584 TTATTTTTATATGTTTAATATTT-TAAATTAAA
1 TTATTATTATATGATTAAT-TTTATAAATTAAA
*
119616 TTATTATTATTTGATTAATTTTATAAATTAA
1 TTATTATTATATGATTAATTTTATAAATTAA
119647 TAATAATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 3 0.11
32 24 0.89
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (32 bp):
TTATTATTATATGATTAATTTTATAAATTAAA
Found at i:121273 original size:65 final size:66
Alignment explanation
Indices: 121168--121292 Score: 180
Period size: 65 Copynumber: 1.9 Consensus size: 66
121158 GTCCATAAGG
*
121168 ATTACCAGTCGGTGTTGAACCTATAAAATGAATTACCAGCAACGACTGAACCTGCCAGAGATAGG
1 ATTACCAGTCGGTGTAGAACCTATAAAATGAATTACCAGCAACGACTGAACCTGCCAGAGATAGG
121233 A
66 A
* * * * * *
121234 ATTACTAGTTGGTGTAGAACTTATAGAA-GAATTACCAGCAACGACTGAATCTGTCAGAG
1 ATTACCAGTCGGTGTAGAACCTATAAAATGAATTACCAGCAACGACTGAACCTGCCAGAG
121293 TCTTCATACC
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
65 29 0.56
66 23 0.44
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (66 bp):
ATTACCAGTCGGTGTAGAACCTATAAAATGAATTACCAGCAACGACTGAACCTGCCAGAGATAGG
A
Found at i:121376 original size:12 final size:12
Alignment explanation
Indices: 121355--121389 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
121345 CAGAGATATT
121355 AGAAATCAGAGC
1 AGAAATCAGAGC
* *
121367 AGAGATCAGAAC
1 AGAAATCAGAGC
121379 AGAAATCAGAG
1 AGAAATCAGAG
121390 AAAATATCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.51, C:0.14, G:0.26, T:0.09
Consensus pattern (12 bp):
AGAAATCAGAGC
Found at i:123672 original size:23 final size:23
Alignment explanation
Indices: 123646--123728 Score: 121
Period size: 23 Copynumber: 3.6 Consensus size: 23
123636 TTTATATGGT
* *
123646 ACTTTGGTGAATTTCTACGCGGC
1 ACTTCGGTGAATTTCTACGTGGC
*
123669 ACTTCGGTGCATTTCTACGTGGC
1 ACTTCGGTGAATTTCTACGTGGC
* *
123692 ACTTCGATGCATTTCTACGTGGC
1 ACTTCGGTGAATTTCTACGTGGC
123715 ACTTCGGTGAATTT
1 ACTTCGGTGAATTT
123729 ATATGAGCTG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (23 bp):
ACTTCGGTGAATTTCTACGTGGC
Found at i:124610 original size:27 final size:28
Alignment explanation
Indices: 124560--124624 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 28
124550 TATTCTAGGG
*
124560 TTTAGAGGTATTTTAGGTCATTTTACAC
1 TTTAGGGGTATTTTAGGTCATTTTACAC
*
124588 TTTAGGGGTGTTTT-GGTCATTTTACAC
1 TTTAGGGGTATTTTAGGTCATTTTACAC
*
124615 TTCAGGGGTA
1 TTTAGGGGTA
124625 ATTCTATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.20, C:0.11, G:0.25, T:0.45
Consensus pattern (28 bp):
TTTAGGGGTATTTTAGGTCATTTTACAC
Found at i:125562 original size:19 final size:19
Alignment explanation
Indices: 125538--125579 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
125528 CAACTCTGGC
*
125538 CAAAGTCAATGGGTCGGGT
1 CAAAGTCAACGGGTCGGGT
* *
125557 CAAAGTCAACGGTTCGGTT
1 CAAAGTCAACGGGTCGGGT
125576 CAAA
1 CAAA
125580 TCGAGTTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (19 bp):
CAAAGTCAACGGGTCGGGT
Found at i:126839 original size:39 final size:40
Alignment explanation
Indices: 126782--126872 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
126772 TCAGTATTCA
*
126782 TCCCGAATGACTGCTATATAAGTCCC-TAGGACCACTATG
1 TCCCGAAAGACTGCTATATAAGTCCCATAGGACCACTATG
* * *
126821 TCCCGAAGGACTGGTATATATGTCCCATAGGACCACTATG
1 TCCCGAAAGACTGCTATATAAGTCCCATAGGACCACTATG
126861 TCCCGAAAGACT
1 TCCCGAAAGACT
126873 ACAATACCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 23 0.49
40 24 0.51
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TCCCGAAAGACTGCTATATAAGTCCCATAGGACCACTATG
Found at i:127507 original size:20 final size:20
Alignment explanation
Indices: 127478--127516 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
127468 TTTTTCATTT
*
127478 AGGGGGAATCGATACCCCCC
1 AGGGGAAATCGATACCCCCC
127498 AGGGGAAATCGATACCCCC
1 AGGGGAAATCGATACCCCC
127517 TGAACATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.28, T:0.10
Consensus pattern (20 bp):
AGGGGAAATCGATACCCCCC
Found at i:131968 original size:17 final size:18
Alignment explanation
Indices: 131929--131975 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
131919 TGTTTCTGAG
*
131929 GGAATTGAAATCTGTGAA
1 GGAATTGGAATCTGTGAA
*
131947 GGAATTGGAATCTGT-CA
1 GGAATTGGAATCTGTGAA
131964 GGAATTGGAATC
1 GGAATTGGAATC
131976 CAATTTCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (18 bp):
GGAATTGGAATCTGTGAA
Found at i:132436 original size:37 final size:38
Alignment explanation
Indices: 132352--132438 Score: 133
Period size: 37 Copynumber: 2.3 Consensus size: 38
132342 TTTACCCTAA
132352 ACCCGAACCCGACTCGAATATCACACTTAAAAAAACCCG
1 ACCCG-ACCCGACTCGAATATCACACTTAAAAAAACCCG
*
132391 ACCAGACCCGAC-CTGAATATCACACTT-AAAAAACCCG
1 ACCCGACCCGACTC-GAATATCACACTTAAAAAAACCCG
132428 ACCCGACCCGA
1 ACCCGACCCGA
132439 ACAAAATAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
37 21 0.47
38 20 0.44
39 4 0.09
ACGTcount: A:0.39, C:0.38, G:0.11, T:0.11
Consensus pattern (38 bp):
ACCCGACCCGACTCGAATATCACACTTAAAAAAACCCG
Found at i:135854 original size:4 final size:4
Alignment explanation
Indices: 135845--135877 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
135835 ATGCTTTATT
*
135845 TTTA TTTA TTTA -TTA TCTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
135878 ATTGCACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:135880 original size:15 final size:15
Alignment explanation
Indices: 135839--135880 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
135829 GAAGAGATGC
135839 TTTATTT-TTATTTA
1 TTTATTTATTATTTA
135853 TTTA-TTATCTATTTA
1 TTTATTTAT-TATTTA
135868 TTTATTTATTATT
1 TTTATTTATTATT
135881 GCACATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 2 0.08
14 5 0.20
15 14 0.56
16 4 0.16
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:136064 original size:81 final size:81
Alignment explanation
Indices: 135925--136074 Score: 246
Period size: 81 Copynumber: 1.9 Consensus size: 81
135915 TAATGGAAGA
* *
135925 CGTTTCCACAAGATGGTCAAGCTCTACCAAATTTAACAGCTTAGTCTCACTTTTAATGGAACTTA
1 CGTTTCCACAAAATGGTCAAGCTCTACCAAATTTAACAGCTTAGTCTCACTTTGAATGGAACTTA
135990 ATCTAACCATCAAAGG
66 ATCTAACCATCAAAGG
* * * *
136006 CGTTTCTACAAAATGGTCACGTTCTACCAAATTTAACAGCTTGGTCTCACTTTGAATGGAACTTA
1 CGTTTCCACAAAATGGTCAAGCTCTACCAAATTTAACAGCTTAGTCTCACTTTGAATGGAACTTA
136071 ATCT
66 ATCT
136075 GGCCTTGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (81 bp):
CGTTTCCACAAAATGGTCAAGCTCTACCAAATTTAACAGCTTAGTCTCACTTTGAATGGAACTTA
ATCTAACCATCAAAGG
Found at i:136823 original size:113 final size:112
Alignment explanation
Indices: 136706--136911 Score: 242
Period size: 113 Copynumber: 1.8 Consensus size: 112
136696 ATCCTATTAT
* *
136706 TTCAAAATT-ATAAT-TATGAAAAAAAAAAT-ATTAATTTATAT-ATTTATAAATAAAATATTTT
1 TTCAAAATTAAAAATATAT-AAAAAAAAAATAATTAA--TATATGATTTA-AAA-AAAATATTAT
*
136767 TTATTTAGAAATATCAGAAAAT-GACTTCTAGTGCCTTAAGACAGCTCTATTC
61 TTATTTA-AAATATCAGAAAATGGACATCTAGTGCCTTAAGACAGCTCTATTC
* * ** *
136819 TTCAATATTAAAAATAATATATAATTAAAATAATTAATATATGATTTAAAAATAATATTATTTAT
1 TTCAAAATTAAAAAT-ATATAAAAAAAAAATAATTAATATATGATTTAAAAAAAATATTATTTAT
136884 TTAAAATATCAGAAAATGGACATCTAGT
65 TTAAAATATCAGAAAATGGACATCTAGT
136912 TGTTTTAAGA
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
112 14 0.18
113 32 0.41
114 12 0.15
115 13 0.16
116 8 0.10
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (112 bp):
TTCAAAATTAAAAATATATAAAAAAAAAATAATTAATATATGATTTAAAAAAAATATTATTTATT
TAAAATATCAGAAAATGGACATCTAGTGCCTTAAGACAGCTCTATTC
Found at i:136882 original size:16 final size:18
Alignment explanation
Indices: 136826--136876 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 18
136816 TTCTTCAATA
136826 TTAAAAATAATATATAAT
1 TTAAAAATAATATATAAT
* *
136844 TAAAATAATTAATATATGAT
1 TTAAA-AA-TAATATATAAT
136864 TTAAAAATAATAT
1 TTAAAAATAATAT
136877 TATTTATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 10 0.36
19 4 0.14
20 14 0.50
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TTAAAAATAATATATAAT
Found at i:136933 original size:113 final size:114
Alignment explanation
Indices: 136742--136963 Score: 294
Period size: 113 Copynumber: 2.0 Consensus size: 114
136732 AATATTAATT
* *
136742 TATATATTTATAAATAAAATATTTTTTATTTAGAAATATCAGAAAATGACTTCTAGTGCCTTAAG
1 TATATATTTATAAATAAAATATTATTTATTTAGAAATATCAGAAAATGACATCTAGTGCCTTAAG
*
136807 ACAGCTCTATTCTTCAATATT-AAAAAT-AATATATAATTAAAATAATTAA
66 ACAGCCCTATTCTT-AATATTGAAAAATAAATATAT-ATTAAAATAATTAA
* **
136856 TATATGATTTA-AAA-ATAATATTATTTATTTA-AAATATCAGAAAATGGACATCTAGTTGTTTT
1 TATAT-ATTTATAAATAAAATATTATTTATTTAGAAATATCAGAAAAT-GACATCTAG-TGCCTT
*
136918 AAGACTGCCCT-TTCTTAATATTGAAAAATAAATATATATTAAAATA
63 AAGACAGCCCTATTCTTAATATTGAAAAATAAATATATATTAAAATA
136964 TGATTATTAA
Statistics
Matches: 96, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
112 20 0.21
113 43 0.45
114 28 0.29
115 5 0.05
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (114 bp):
TATATATTTATAAATAAAATATTATTTATTTAGAAATATCAGAAAATGACATCTAGTGCCTTAAG
ACAGCCCTATTCTTAATATTGAAAAATAAATATATATTAAAATAATTAA
Found at i:137076 original size:26 final size:26
Alignment explanation
Indices: 137043--137121 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 26
137033 ATTATTTATA
*
137043 AATAATAAGATAATA-TAAAAAGTAAT
1 AATAATAAAATAATATTAAAAA-TAAT
*
137069 AATAATAAAATAATATTACAAATAAT
1 AATAATAAAATAATATTAAAAATAAT
137095 AAT--TAAAATATAGTATTAAAAAATAAT
1 AATAATAAAATA-A-TATT-AAAAATAAT
137122 CAAAAATGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.15
25 1 0.02
26 25 0.54
27 13 0.28
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (26 bp):
AATAATAAAATAATATTAAAAATAAT
Found at i:137093 original size:12 final size:11
Alignment explanation
Indices: 137066--137119 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 11
137056 TATAAAAAGT
*
137066 AATAATAATAA
1 AATAATATTAA
137077 AATAATATTACA
1 AATAATATTA-A
137089 AATAATAATTAA
1 AATAAT-ATTAA
137101 AATATAGTATTAA
1 AATA-A-TATTAA
137114 AA-AATA
1 AATAATA
137120 ATCAAAAATG
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
10 2 0.05
11 10 0.26
12 13 0.34
13 12 0.32
14 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (11 bp):
AATAATATTAA
Found at i:137119 original size:24 final size:24
Alignment explanation
Indices: 137066--137126 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
137056 TATAAAAAGT
137066 AATAATAA-TAAAATAATATTACA
1 AATAATAATTAAAATAATATTACA
137089 AATAATAATTAAAATATAGTATTA-A
1 AATAATAATTAAAATA-A-TATTACA
*
137114 AA-AATAATCAAAA
1 AATAATAATTAAAA
137127 ATGAAATTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 8 0.24
24 17 0.50
25 4 0.12
26 5 0.15
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAATTAAAATAATATTACA
Found at i:151051 original size:103 final size:103
Alignment explanation
Indices: 150831--151043 Score: 399
Period size: 103 Copynumber: 2.1 Consensus size: 103
150821 GGGTCTACGC
150831 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
150896 CCTTAGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
*
150934 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTGTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
150999 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
151037 GGTCCTT
1 GGTCCTT
151044 ATGGACATTA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 107 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:151093 original size:23 final size:23
Alignment explanation
Indices: 151060--151127 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
151050 ATTATTATAT
151060 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
151083 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* * *
151106 GGCACTTCGGTGTAATTATACG
1 GGCACTACGGTGCAATTCTACG
151128 AGCTGTGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:152132 original size:145 final size:144
Alignment explanation
Indices: 151879--152175 Score: 576
Period size: 145 Copynumber: 2.1 Consensus size: 144
151869 ACCGAAGTGT
151879 CGCGTAGAATTGCACCGTAGTGCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAA
1 CGCGTAGAATTGCACCGTAGTGCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAA
151944 TCATATACATATGCTAGGGATCATATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATAT
66 TCATATACATATGCTAGGGATCATATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATAT
152009 ATATCCCGAAGGAC
131 ATATCCCGAAGGAC
*
152023 CGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGA
1 CGCGTAGAATTGCACCGTAGTG-CATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGA
152088 ATCATATACATATGCTAGGGATCATATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATA
65 ATCATATACATATGCTAGGGATCATATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATA
152153 TATATCCCGAAGGAC
130 TATATCCCGAAGGAC
152168 CGCGTAGA
1 CGCGTAGA
152176 CCCTCGACTC
Statistics
Matches: 151, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
144 22 0.15
145 129 0.85
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (144 bp):
CGCGTAGAATTGCACCGTAGTGCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAA
TCATATACATATGCTAGGGATCATATGTGTCTCACCAGACTTCACACATGTTCCAAAGAATATAT
ATATCCCGAAGGAC
Found at i:152728 original size:2 final size:2
Alignment explanation
Indices: 152721--152764 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
152711 TCTCTTAGAC
152721 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
152763 AT
1 AT
152765 TCACATGTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:152961 original size:2 final size:2
Alignment explanation
Indices: 152954--152986 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
152944 ATTATTTCTT
152954 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
152987 CTAATCTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:153132 original size:17 final size:18
Alignment explanation
Indices: 153110--153143 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
153100 TCCCATCTAG
153110 CTTATC-TATATGTTCAT
1 CTTATCATATATGTTCAT
*
153127 CTTATCATTTATGTTCA
1 CTTATCATATATGTTCA
153144 AATCTCCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.53
Consensus pattern (18 bp):
CTTATCATATATGTTCAT
Found at i:153733 original size:64 final size:63
Alignment explanation
Indices: 153635--153795 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 63
153625 TAATGAAGGT
* *
153635 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTT-AATGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAT--
*
153698 GG
62 GC
*
153700 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATTC
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
* *
153764 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
153796 CCTTAAACAA
Statistics
Matches: 86, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
63 1 0.01
64 58 0.67
65 24 0.28
66 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
Found at i:157212 original size:149 final size:149
Alignment explanation
Indices: 156942--157256 Score: 603
Period size: 149 Copynumber: 2.1 Consensus size: 149
156932 TATAATTGCA
*
156942 CCGAAGTACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
157007 TCCTTAAGAATCATATACATATGCTAGGGATCATATATGTGTCTCACCAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATGCTAGGGATCATATATGTGTCTCACCAGACTTCACACATGTTC
157072 CAAAGAATATATATATATC
131 CAAAGAATATATATATATC
* *
157091 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCTATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
157156 TCCTTAAGAATCATATACATATGCTAGGGATCATATATGTGTCTCACCAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATGCTAGGGATCATATATGTGTCTCACCAGACTTCACACATGTTC
157221 CAAAGAATATATATATATC
131 CAAAGAATATATATATATC
157240 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
157257 CCCTCGACTC
Statistics
Matches: 163, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 163 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCATATATGTGTCTCACCAGACTTCACACATGTTC
CAAAGAATATATATATATC
Found at i:157810 original size:2 final size:2
Alignment explanation
Indices: 157803--157848 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
157793 TCTCTTAGAC
157803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
157845 AT AT
1 AT AT
157849 TCACATGTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:158201 original size:18 final size:18
Alignment explanation
Indices: 158180--158214 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
158170 TCCCATCTAG
158180 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
158198 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
158215 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:158802 original size:64 final size:66
Alignment explanation
Indices: 158704--158828 Score: 202
Period size: 64 Copynumber: 1.9 Consensus size: 66
158694 TAATGAAGGT
*
158704 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTTAATGGG
1 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAATGGG
158768 G
66 G
*
158769 ATGCATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAA
1 ATGCATCGATGCACTACAC-CATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAA
158829 ATTCATGAAG
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
63 1 0.02
64 30 0.54
65 25 0.45
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (66 bp):
ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAATGGG
G
Found at i:159925 original size:16 final size:16
Alignment explanation
Indices: 159874--159926 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
159864 TGTATGTGAT
159874 ATATGTATATGATGTGTG
1 ATATG-ATAT-ATGTGTG
* * **
159892 ATATGATGTGTGCATG
1 ATATGATATATGTGTG
159908 ATATGATATATGTGTG
1 ATATGATATATGTGTG
159924 ATA
1 ATA
159927 GGGGTTATGG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
16 19 0.70
17 3 0.11
18 5 0.19
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (16 bp):
ATATGATATATGTGTG
Found at i:160594 original size:22 final size:21
Alignment explanation
Indices: 160559--160599 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
160549 AAATATTTTA
*
160559 ATTTTTAATAATATTTTTAGT
1 ATTTTTAATAATATATTTAGT
*
160580 ATTTTTAAATTATATATTTA
1 ATTTTT-AATAATATATTTA
160600 CTTTTTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTTTAATAATATATTTAGT
Found at i:160621 original size:22 final size:20
Alignment explanation
Indices: 160554--160621 Score: 50
Period size: 20 Copynumber: 3.3 Consensus size: 20
160544 TTGAAAAATA
*
160554 TTTTAATTTTTAATAA-TATT
1 TTTTTATTTTT-ATAATTATT
* *
160574 TTTAGTATTTTTA-AATTATA
1 TTT-TTATTTTTATAATTATT
*
160594 TATTTACTTTTTAGTAATTATT
1 TTTTTA-TTTTTA-TAATTATT
160616 TTTTTA
1 TTTTTA
160622 GAATTTATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
19 4 0.11
20 15 0.42
21 6 0.17
22 11 0.31
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTTTATTTTTATAATTATT
Found at i:162041 original size:26 final size:26
Alignment explanation
Indices: 162012--162121 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
162002 CTCTTGTAGT
* *
162012 TTTATTTACGTTGTAATCTTTAATTA
1 TTTATTTACATTTTAATCTTTAATTA
162038 TTTATTTACATTTTAATCTTTAATTA
1 TTTATTTACATTTTAATCTTTAATTA
162064 TTTATTTACATTTTAATCTTTAATTA
1 TTTATTTACATTTTAATCTTTAATTA
162090 TTTATTTACATTTTAATCTTTAATTA
1 TTTATTTACATTTTAATCTTTAATTA
162116 TTTATT
1 TTTATT
162122 GATTATCAAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTATTTACATTTTAATCTTTAATTA
Found at i:162054 original size:19 final size:18
Alignment explanation
Indices: 162025--162106 Score: 55
Period size: 19 Copynumber: 4.6 Consensus size: 18
162015 ATTTACGTTG
162025 TAATCTTTAATTATTTATT
1 TAAT-TTTAATTATTTATT
* *
162044 TACATTTTAA-TCTTTAAT
1 TA-ATTTTAATTATTTATT
* **
162062 T-A-TTTATTTACAT-TT
1 TAATTTTAATTATTTATT
162077 TAATCTTTAATTATTTATT
1 TAAT-TTTAATTATTTATT
162096 TACATTTTAAT
1 TA-ATTTTAAT
162107 CTTTAATTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
15 6 0.13
16 4 0.09
18 15 0.33
19 17 0.37
20 4 0.09
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTTTAATTATTTATT
Found at i:162412 original size:21 final size:20
Alignment explanation
Indices: 162388--162448 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 20
162378 GGCAACCAAC
162388 TTTGAAAAATGTTTTTCAAA
1 TTTGAAAAATGTTTTTCAAA
**
162408 GTTTGGTAAATG--TTTC---
1 -TTTGAAAAATGTTTTTCAAA
162424 TTTGAAAAATGTTTTTCAAAA
1 TTTGAAAAATGTTTTTC-AAA
162445 TTTG
1 TTTG
162449 GTAAAGTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
15 9 0.30
17 4 0.13
19 4 0.13
21 13 0.43
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTGAAAAATGTTTTTCAAA
Found at i:162434 original size:36 final size:35
Alignment explanation
Indices: 162387--162457 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 35
162377 TGGCAACCAA
*
162387 CTTTGAAAAATGTTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGTTTTTCAAAATTTGGTAAA-GTTT
162423 CTTTGAAAAATGTTTTTCAAAATTTGGTAAAGTTT
1 CTTTGAAAAATGTTTTTCAAAATTTGGTAAAGTTT
162458 GGTAGATGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 4 0.12
36 30 0.88
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.46
Consensus pattern (35 bp):
CTTTGAAAAATGTTTTTCAAAATTTGGTAAAGTTT
Found at i:166649 original size:13 final size:13
Alignment explanation
Indices: 166633--166657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
166623 AAATATATAT
166633 AAAAAAGAAAATG
1 AAAAAAGAAAATG
166646 AAAAAAGAAAAT
1 AAAAAAGAAAAT
166658 AAATAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAAAAGAAAATG
Found at i:166981 original size:2 final size:2
Alignment explanation
Indices: 166933--166965 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
166923 CTTGTGTAGA
166933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
166966 GTAAAATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:167318 original size:24 final size:23
Alignment explanation
Indices: 167291--167345 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
167281 AAATAAGTAG
167291 AATAAAAGGAAATATAATAGTAAA
1 AATAAAA-GAAATATAATAGTAAA
* *
167315 AATAATAATAAATATAATAGTAAT
1 AATAA-AAGAAATATAATAGTAAA
167339 AATAAAA
1 AATAAAA
167346 ATGCAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 24 0.86
25 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.25
Consensus pattern (23 bp):
AATAAAAGAAATATAATAGTAAA
Found at i:167319 original size:12 final size:12
Alignment explanation
Indices: 167304--167343 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
167294 AAAAGGAAAT
167304 ATAATAGTAAAA
1 ATAATAGTAAAA
* *
167316 ATAATAATAAAT
1 ATAATAGTAAAA
*
167328 ATAATAGTAATA
1 ATAATAGTAAAA
167340 ATAA
1 ATAA
167344 AAATGCAAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATAGTAAAA
Found at i:167945 original size:37 final size:37
Alignment explanation
Indices: 167895--167999 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
167885 ATGCTTGTGG
* * * *
167895 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTAT
* * *
167932 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTAT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTAT
167969 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
168000 GACGAAAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTAT
Found at i:169031 original size:106 final size:106
Alignment explanation
Indices: 168727--170198 Score: 2133
Period size: 106 Copynumber: 14.0 Consensus size: 106
168717 GCATTGTTCC
* * * * *
168727 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAAA-CGGGAAATTATTTGTTGAC
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCT-GAAATTGGGAAGTTGTTTATTGAC
* * * * *
168790 AACCAGCCGTCCCTTCGTTGTGAAGTTAAACTTGTGTTGTCTC
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
168833 GAGTCC-A-ATCCTTCACTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTGTTGAGAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * * * *
168890 TCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
168931 GAGTCTAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * *
168996 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
169037 GAGTCCAATATCCTACGTTGTGAAGTTGAAATTGGCTCTGAAAATGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
169102 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
169143 GAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
169208 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
169249 GAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
169314 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
169355 GAGTCCAATATCCTTCGCTATGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
169420 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
169461 GAGTCCAATATCCTACGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
169526 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
169567 GAGTCCAATATCCTTCGTTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
169632 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
169673 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
169738 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
169779 GAGTCCAATATCCTTCGCTGTGAAGTTGAATTTGGCTCTGAAATCGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * *
169844 CCA-CGGTCCCTTTGTCGTAAAGTTGAACTTGCGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
169884 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTCGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
169949 CCAGC--TCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
169988 GAGTTCAATATCCTTCGCTGTGAAGTTGAAACTGGCTCTGAAATTGAGAAATTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
170053 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
170094 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * *
170159 CCAGTGGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
170199 TTTGTGGCAC
Statistics
Matches: 1242, Mismatches: 112, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
98 50 0.04
99 2 0.00
100 31 0.02
101 2 0.00
102 3 0.00
103 1 0.00
104 121 0.10
105 98 0.08
106 934 0.75
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:171032 original size:22 final size:22
Alignment explanation
Indices: 171006--171082 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
170996 TTATGTTTGG
171006 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
171028 TCAAAAGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
171050 TCATAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
171072 TCAACGGTTTG
1 TCAAAGGTTTG
171083 ATGGGGTAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:172131 original size:12 final size:11
Alignment explanation
Indices: 172103--172143 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
172093 TAACAAAATA
* *
172103 AATAATATAAA
1 AATAATACAAG
172114 AATAATACAAG
1 AATAATACAAG
172125 TAATAATACAAG
1 -AATAATACAAG
172137 AATAATA
1 AATAATA
172144 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (11 bp):
AATAATACAAG
Found at i:172190 original size:27 final size:28
Alignment explanation
Indices: 172161--172212 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
172151 AGAGAAAGTA
172161 AAAAAATATA-ATA-ATAATA-AAATAT
1 AAAAAATATACATATATAATATAAATAT
172186 AAAAAATATACATATATAATATAAATA
1 AAAAAATATACATATATAATATAAATA
172213 AGTAGAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.42
26 3 0.12
27 6 0.25
28 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAAAATATACATATATAATATAAATAT
Found at i:172249 original size:12 final size:12
Alignment explanation
Indices: 172227--172271 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
172217 GAATAAAAGG
172227 AAAATATAATAGT
1 AAAA-ATAATAGT
*
172240 AAAAATAATAAT
1 AAAAATAATAGT
*
172252 AAATATAATAGT
1 AAAAATAATAGT
*
172264 AATAATAA
1 AAAAATAA
172272 AAATGCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:172881 original size:37 final size:36
Alignment explanation
Indices: 172835--172935 Score: 139
Period size: 37 Copynumber: 2.8 Consensus size: 36
172825 CTTGTGGATC
* * *
172835 CTATCTTTAGGAGTTTAAATCATAGTAGAACTCTAT
1 CTATTTTTAGGAGTTTGAATCCTAGTAGAACTCTAT
* * *
172871 CATATTTTTAGGAGTTTGAATCCTAGCAAAATTCTAT
1 C-TATTTTTAGGAGTTTGAATCCTAGTAGAACTCTAT
172908 CTATTTTTAGGAGTTTGAATCCTAGTAG
1 CTATTTTTAGGAGTTTGAATCCTAGTAG
172936 GACGAAAAGG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
36 26 0.46
37 30 0.54
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.41
Consensus pattern (36 bp):
CTATTTTTAGGAGTTTGAATCCTAGTAGAACTCTAT
Found at i:173318 original size:34 final size:35
Alignment explanation
Indices: 173275--173357 Score: 114
Period size: 36 Copynumber: 2.4 Consensus size: 35
173265 TAAAAGTTAG
*
173275 TTTCAAAGTTTGGCAACCA-ACTTTGAAAAATGTT
1 TTTCAAAGTTTGGCAAACATACTTTGAAAAATGTT
* * *
173309 TTTCAAAGTTTGGTAAATATTTCTTTGAAAAATGTT
1 TTTCAAAGTTTGGCAAACA-TACTTTGAAAAATGTT
173345 TTTCAAAGTTTGG
1 TTTCAAAGTTTGG
173358 TAAAGTTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
34 16 0.37
36 27 0.63
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.42
Consensus pattern (35 bp):
TTTCAAAGTTTGGCAAACATACTTTGAAAAATGTT
Found at i:173320 original size:21 final size:21
Alignment explanation
Indices: 173296--173356 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
173286 GGCAACCAAC
173296 TTTGAAAAATGTTTTTCAAAG
1 TTTGAAAAATGTTTTTCAAAG
** *
173317 TTTGGTAAA--TATTTC----
1 TTTGAAAAATGTTTTTCAAAG
173332 TTTGAAAAATGTTTTTCAAAG
1 TTTGAAAAATGTTTTTCAAAG
173353 TTTG
1 TTTG
173357 GTAAAGTTTG
Statistics
Matches: 28, Mismatches: 6, Indels: 12
0.61 0.13 0.26
Matches are distributed among these distances:
15 7 0.25
17 5 0.18
19 5 0.18
21 11 0.39
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.48
Consensus pattern (21 bp):
TTTGAAAAATGTTTTTCAAAG
Found at i:191992 original size:42 final size:42
Alignment explanation
Indices: 191933--192015 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
191923 GATTTATTCC
*
191933 AAGTTCGTGTTACGATTTATACT-AAATTCGTTGCGATAGTCG
1 AAGTTCGCGTTACGATTTAT-CTCAAATTCGTTGCGATAGTCG
* *
191975 AAGTTCGCGTTGCGATTTATTTCAAATTCGTTGCGATAGTC
1 AAGTTCGCGTTACGATTTATCTCAAATTCGTTGCGATAGTC
192016 CAAAAGCGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 36 0.97
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.39
Consensus pattern (42 bp):
AAGTTCGCGTTACGATTTATCTCAAATTCGTTGCGATAGTCG
Done.