Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009596.1 Hibiscus syriacus cultivar Beakdansim tig00116975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1846166
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 8
Found at i:687610 original size:51 final size:50
Alignment explanation
Indices: 687547--688002 Score: 376
Period size: 51 Copynumber: 8.6 Consensus size: 50
687537 TTGTGGGTCT
* *
687547 TATACTCTCTAAAGAAATAGGGAGC-ATACACGTTTGAAGATTTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGA-AC-CGTTTGAAGATTTTCGAGTTC
* *
687598 TATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTTGAAGATTTTCGAGTTC
* * * * ** *
687649 CATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAA-CCGT---TTGAAGATTTTCGAGTTC
* *
687703 TATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCAGAAGATTATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAA-CCGTTT---GAAGATT-TTCGAGTTC
* * * * *
687758 CATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTT---GAAGATTTTCGAGTTC
* *
687812 TATACTTCCTGAAAGAAAGAGGGAGCGAACCGTTTGAAGATGTTCGAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAACCGTTTGAAGATTTTCGAGTTC
* **
687863 TATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTT-GAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAA-CCGT---TTGAAGAT-TTTCGAGTTC
* * *
687918 TATACTCCCTAGAGAAAGAGGGAGCGAACTCGTTTGCAAATGATTGCTCAAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAAC-CGTTTG--AA-GATT-TTCGAGTTC
* * * *
687973 TATACTCCATGAAGGAAGAGGGAACGAACC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACC
688003 CGTTGACAGA
Statistics
Matches: 340, Mismatches: 42, Indels: 43
0.80 0.10 0.10
Matches are distributed among these distances:
50 1 0.00
51 114 0.34
52 7 0.02
53 4 0.01
54 100 0.29
55 112 0.33
56 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (50 bp):
TATACTCCCTAAAGAAAGAGGGAGCGAACCGTTTGAAGATTTTCGAGTTC
Found at i:687768 original size:160 final size:159
Alignment explanation
Indices: 687582--687946 Score: 470
Period size: 160 Copynumber: 2.3 Consensus size: 159
687572 ATACACGTTT
* *
687582 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTG-TT-AGAAGATGTTCGA
1 GAAGATTTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTTAAGAAGATATTCGA
* *
687645 GTTCCATACTCCCT-AGATAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACT
66 GTTCCATACTCCCTGAAAGAAAGAGGGAACGAA-CCGT---AAGAAGATGTTCGAGTTCTATACT
* ** *
687709 CCCT-AGAGAAAGAGGGAGCGAACCCATTTGCA
127 CCCTGAAAGAAAGAGGGAGCGAACCCATAAGAA
* * *
687741 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATATTC
1 GAAGATT-TTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTT-AAGAAGATATTC
* * * ** *
687806 GAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCGTTTGAAGATGTTCGAGTTCTATACTTC
64 GAGTTCCATACTCCCTGAAAGAAAGAGGGAACGAACCGTAAGAAGATGTTCGAGTTCTATACTCC
*
687871 CTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
129 CTGAAAGAAAGAGGGAGCGAACCCATAAGAA
687902 GAAGATGTTT-GAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAAC
1 GAAGAT-TTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAAC
687947 TCGTTTGCAA
Statistics
Matches: 178, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
159 7 0.04
160 94 0.53
161 33 0.19
162 1 0.01
163 28 0.16
164 15 0.08
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (159 bp):
GAAGATTTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTTAAGAAGATATTCGA
GTTCCATACTCCCTGAAAGAAAGAGGGAACGAACCGTAAGAAGATGTTCGAGTTCTATACTCCCT
GAAAGAAAGAGGGAGCGAACCCATAAGAA
Found at i:687776 original size:55 final size:54
Alignment explanation
Indices: 687582--688014 Score: 463
Period size: 55 Copynumber: 8.1 Consensus size: 54
687572 ATACACGTTT
* * *
687582 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTG-TT--A
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * * **
687633 GAAGATGTTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* *
687687 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * * * *
687741 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAA
1 GAAGA-TGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
* * *
687796 GAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAA-CCGTTT---
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAA
* * **
687847 GAAGATGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAA
* *
687902 GAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACTCGTTTGCAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG-AA
* * * * * *
687957 -ATGATTGCTCAAGTTCTATACTCCAT-GAAGGAAGAGGGAACGAACCCG-TTGACA
1 GAAGA-TGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGA-A
688011 GAAG
1 GAAG
688015 GTTTTTCAAG
Statistics
Matches: 322, Mismatches: 46, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
51 86 0.27
52 4 0.01
53 1 0.00
54 107 0.33
55 124 0.39
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
Found at i:687838 original size:215 final size:213
Alignment explanation
Indices: 687582--688002 Score: 623
Period size: 215 Copynumber: 2.0 Consensus size: 213
687572 ATACACGTTT
*
687582 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGT
1 GAAGATATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTAGAAGATGTTCGAGT
* *
687647 TCCATACTCCCT-AGATAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTCC
65 TCCATACTCCCTGAAAGAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTCC
* * *
687711 CTAGAGAAAGAGGGAGCGAACCCATTTGCAGAA-GATTATTCGAGTTCCATACTCCCTAGATA-A
130 CTAGAGAAAGAGGGAGCGAACCCATTTGCA-AATGATTACTCAAGTTCCATACTCCAT-GA-AGA
687774 AGAGGGAACGAACCTGTTTGAA
192 AGAGGGAACGAACCTGTTTGAA
* *
687796 GAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCGTTTGAAGATGTTCGAGT
1 GAAGATATTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCGTTAGAAGATGTTCGAGT
* * * *
687861 TCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTTGAGTTCTATACTCC
65 TCCATACTCCCTGAAAGAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTCC
* * * *
687926 CTAGAGAAAGAGGGAGCGAACTCGTTTGCAAATGATTGCTCAAGTTCTATACTCCATGAAGGAAG
130 CTAGAGAAAGAGGGAGCGAACCCATTTGCAAATGATTACTCAAGTTCCATACTCCATGAA-GAAG
687991 AGGGAACGAACC
194 AGGGAACGAACC
688003 CGTTGACAGA
Statistics
Matches: 186, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
213 1 0.01
214 55 0.30
215 130 0.70
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (213 bp):
GAAGATATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCGTTAGAAGATGTTCGAGTT
CCATACTCCCTGAAAGAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTCCC
TAGAGAAAGAGGGAGCGAACCCATTTGCAAATGATTACTCAAGTTCCATACTCCATGAAGAAGAG
GGAACGAACCTGTTTGAA
Found at i:687994 original size:160 final size:155
Alignment explanation
Indices: 687582--688002 Score: 451
Period size: 160 Copynumber: 2.6 Consensus size: 155
687572 ATACACGTTT
* *
687582 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAG-AAGA-TGTTCGA
1 GAAGATTTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTTGAAAGATTG-TCGA
*
687645 GTTCCATACTCCCTAGATA-AAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACT
65 GTTCTATACT-CCT-GA-AGAAGAGGGAACGAA-CCGT-A-AAGAAGATGTTCGAGTTCTATACT
* ** *
687709 CCCTAGAGAAAGAGGGAGCGAACCCATTTGCA
124 CCCTAAAGAAAGAGGGAGCGAACCCATAAGAA
* * *
687741 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATAT-T
1 GAAGATT-TTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTTG-A-AAGAT-TGT
* **
687805 CGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCGT-TTGAAGATGTTCGAGTTCTATACT
62 CGAGTTCTATAC-TCCTG-AAG-AAGAGGGAACGAACCGTAAAGAAGATGTTCGAGTTCTATACT
* *
687869 TCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
124 CCCT-AAAGAAAGAGGGAGCGAACCCATAAGAA
687902 GAAGATGTTT-GAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAA-CTCGTTTGCAAATGATTGC
1 GAAGAT-TTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCT-GTTTG-AAA-GATTG-
*
687965 TCAAGTTCTATACTCCATGAAGGAAGAGGGAACGAACC
61 TCGAGTTCTATACTCC-TGAA-GAAGAGGGAACGAACC
688003 CGTTGACAGA
Statistics
Matches: 223, Mismatches: 21, Indels: 35
0.80 0.08 0.13
Matches are distributed among these distances:
159 12 0.05
160 124 0.56
161 46 0.21
162 3 0.01
163 24 0.11
164 13 0.06
165 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (155 bp):
GAAGATTTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCTGTTTGAAAGATTGTCGAG
TTCTATACTCCTGAAGAAGAGGGAACGAACCGTAAAGAAGATGTTCGAGTTCTATACTCCCTAAA
GAAAGAGGGAGCGAACCCATAAGAA
Found at i:688920 original size:20 final size:16
Alignment explanation
Indices: 688875--688910 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
688865 AATAACAAAA
688875 AGAGAAATCCACAACC
1 AGAGAAATCCACAACC
688891 AGAGAAATCCACAACC
1 AGAGAAATCCACAACC
688907 AGAG
1 AGAG
688911 TCTAAAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.28, G:0.17, T:0.06
Consensus pattern (16 bp):
AGAGAAATCCACAACC
Found at i:695154 original size:21 final size:21
Alignment explanation
Indices: 695128--695172 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
695118 GATTTCTGGG
* *
695128 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
695149 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
695170 CAA
1 CAA
695173 ACGAACATGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:695245 original size:23 final size:22
Alignment explanation
Indices: 695201--695245 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
695191 AATGCCAGAG
*
695201 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
695223 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
695246 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:696588 original size:32 final size:31
Alignment explanation
Indices: 696546--696673 Score: 152
Period size: 31 Copynumber: 4.1 Consensus size: 31
696536 AGAGTCGAGG
696546 GTTTACCTATGTTCTACGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
*
696577 GTTTTACCTATG-TCTTTC-GAGACATATGGACA
1 G-TTTACCTATGTTC-TACGGA-ACATATGGACA
* *
696609 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
* * * *
696640 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
696671 GTT
1 GTT
696674 ATCGAGGATC
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
31 54 0.66
32 28 0.34
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTACGGAACATATGGACA
Found at i:696704 original size:30 final size:30
Alignment explanation
Indices: 696659--696731 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
696649 GGTTCTTCGG
* *
696659 GACCTATGGACAGTTATCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
*
696689 GACCTTTGGATAGTTACCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
*
696719 GACCTCTGGATAG
1 GACCTATGGATAG
696732 GTCCTTCGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (30 bp):
GACCTATGGATAGTTACCGAGGATCTTTAT
Found at i:701709 original size:49 final size:49
Alignment explanation
Indices: 701654--701754 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
701644 AATATGATTC
701654 ACTTACATAATTTTACATTGATTTATAATCATTGAATTAAAAGAAATTG
1 ACTTACATAATTTTACATTGATTTATAATCATTGAATTAAAAGAAATTG
701703 ACTTACATAATTTTACATTGATTTATAATCATTGAATTAAAAGAAATTG
1 ACTTACATAATTTTACATTGATTTATAATCATTGAATTAAAAGAAATTG
701752 ACT
1 ACT
701755 GAGATTATAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.41
Consensus pattern (49 bp):
ACTTACATAATTTTACATTGATTTATAATCATTGAATTAAAAGAAATTG
Found at i:709686 original size:36 final size:36
Alignment explanation
Indices: 709638--709824 Score: 259
Period size: 36 Copynumber: 5.2 Consensus size: 36
709628 AGATGAACAC
* *
709638 TTGAATCGGAAGTGGCGATGCTTCATTCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
* *
709674 TTGAATCAGAAGTGCCGATGCTTCATTCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
* *
709710 TTGAATCGGAAGTGCCGATTCTTCCTTCCGTTC-AC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
* * *
709745 TTGAATCGGAAGTGTCGGTGCTTCCTCCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
* * *
709781 TTGAATCGGAAGTGCCAATGCTTCCCTCCGTTCGAC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
709817 TTGAATCG
1 TTGAATCG
709825 ATGCAAACTT
Statistics
Matches: 133, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
35 30 0.23
36 103 0.77
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (36 bp):
TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
Found at i:709776 original size:71 final size:72
Alignment explanation
Indices: 709638--709824 Score: 268
Period size: 71 Copynumber: 2.6 Consensus size: 72
709628 AGATGAACAC
* * * * *
709638 TTGAATCGGAAGTGGCGATGCTTCATTCCGTTCGATTTGAATCAGAAGTGCCGATGCTTCATTCC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCATCCC
709703 GTTCGAT
66 GTTCGAT
* * * *
709710 TTGAATCGGAAGTGCCGATTCTTCCTTCCGTTC-ACTTGAATCGGAAGTGTCGGTGCTTCCTCCC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCATCCC
709774 GTTCGAT
66 GTTCGAT
* *
709781 TTGAATCGGAAGTGCCAATGCTTCCCTCCGTTCGACTTGAATCG
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCG
709825 ATGCAAACTT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 62 0.61
72 40 0.39
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (72 bp):
TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCATCCC
GTTCGAT
Found at i:710889 original size:14 final size:14
Alignment explanation
Indices: 710870--710901 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
710860 GGTTTCTTGA
710870 GGCGTTGGTGCCTC
1 GGCGTTGGTGCCTC
710884 GGCGTTGGTGCCTC
1 GGCGTTGGTGCCTC
710898 GGCG
1 GGCG
710902 GAGGTGAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.47, T:0.25
Consensus pattern (14 bp):
GGCGTTGGTGCCTC
Found at i:717253 original size:19 final size:19
Alignment explanation
Indices: 717229--717274 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
717219 TTTTGTGTAC
717229 CGATGCACATACCATGCAT
1 CGATGCACATACCATGCAT
717248 CGATGCACATACCATGCAT
1 CGATGCACATACCATGCAT
717267 CGATGCAC
1 CGATGCAC
717275 TCCATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (19 bp):
CGATGCACATACCATGCAT
Found at i:717400 original size:19 final size:19
Alignment explanation
Indices: 717376--717423 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
717366 ATTTATGCAT
717376 CGATGCACTATCAGTGTAC
1 CGATGCACTATCAGTGTAC
717395 CGATGCACTATCAGTGTAC
1 CGATGCACTATCAGTGTAC
*
717414 CGTTGCACTA
1 CGATGCACTA
717424 AGGGTCCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (19 bp):
CGATGCACTATCAGTGTAC
Found at i:725458 original size:35 final size:35
Alignment explanation
Indices: 725385--725458 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
725375 CGTCAAGTCT
* **
725385 AGTAAGGCCCTGAGCACATAGCCAAGGAGCCGGTA
1 AGTAAGGCCCTGAGCACACAGCCAAGGAGCCGCCA
* * * *
725420 AGTAAGGTCCTGAGCACACAGCCGATGAGCCTCCA
1 AGTAAGGCCCTGAGCACACAGCCAAGGAGCCGCCA
725455 AGTA
1 AGTA
725459 TTCTTCCTCC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.28, T:0.14
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCAAGGAGCCGCCA
Found at i:725548 original size:24 final size:24
Alignment explanation
Indices: 725538--725657 Score: 152
Period size: 24 Copynumber: 5.0 Consensus size: 24
725528 CATAATTCAC
* * *
725538 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAT
*
725562 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
*
725586 GTCAAGTATCAGATCATAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
* *
725610 GT-TAGATATCATATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
725634 GTCAAGTATCAGATCAGAAATCCA
1 GTCAAGTATCAGATCAG-AATCCA
725658 ATCGAAAATC
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
23 2 0.02
24 73 0.88
25 8 0.10
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:725669 original size:72 final size:71
Alignment explanation
Indices: 725518--725669 Score: 191
Period size: 72 Copynumber: 2.1 Consensus size: 71
725508 GGATATATTA
* *
725518 AAAATCAAATCATAATTCACGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAGAATC
1 AAAATCAGATCATAATCCACGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAGAATC
725583 CAAGTC
66 CAAGTC
* * * * *
725589 AAGTATCAGATCATAATCCATGT-TAGATATCATATCAGAATCCATGTCAAGTATCAGATCAGAA
1 AA-AATCAGATCATAATCCACGTCAAG-TATCATATCAAAATCCAGGTCAAGTATCAGATCAG-A
725653 ATCCAA-TC
63 ATCCAAGTC
725661 GAAAATCAG
1 -AAAATCAG
725670 GTAAAATATT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
71 4 0.06
72 56 0.81
73 9 0.13
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (71 bp):
AAAATCAGATCATAATCCACGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAGAATC
CAAGTC
Found at i:728060 original size:30 final size:31
Alignment explanation
Indices: 727996--728075 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
727986 CAGTCATAGA
*
727996 TCCCGAAGAACCTAGGTAAACAGTCCATATG
1 TCCCGAAGAACATAGGTAAACAGTCCATATG
728027 TCCCGAAGAACATAGGTAAACAGTCCA-ATG
1 TCCCGAAGAACATAGGTAAACAGTCCATATG
728057 TCCCGAAGAACATAGGTAA
1 TCCCGAAGAACATAGGTAA
728076 CCCTCGACCC
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 22 0.46
31 26 0.54
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (31 bp):
TCCCGAAGAACATAGGTAAACAGTCCATATG
Found at i:728801 original size:61 final size:61
Alignment explanation
Indices: 728726--728902 Score: 219
Period size: 64 Copynumber: 2.9 Consensus size: 61
728716 TAATGAAGGT
* * ** * **
728726 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTATTATTGCTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATTATTAATGGG
* **
728787 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATG--T-ATTATTAATGGG
* *
728851 ATGCATCGATGCACTACTTATGTATCGATGCATGAATTGCATTCGATGTATT
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATT
728903 TATTTTAAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 43 0.43
62 1 0.01
63 1 0.01
64 54 0.55
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (61 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTATTATTAATGGG
Found at i:728862 original size:64 final size:63
Alignment explanation
Indices: 728726--728948 Score: 211
Period size: 64 Copynumber: 3.5 Consensus size: 63
728716 TAATGAAGGT
* * ** ** * **
728726 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATG--TATTATTGCTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTATTATTAATGGG
*
728787 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTT-ATTATTAATGGG
* ** **
728851 ATGCATCGATGCACTACTTATGTATCGATGCATGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATG--TTTATTATTAATGGG
* * * *
728914 AGTGCATCGATGCACTTCCTGTGCATCGATACACC
1 A-TGCATCGATGCACTACTTATGCATCGATGCACC
728949 TTCAAACGAT
Statistics
Matches: 133, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
61 40 0.30
63 3 0.02
64 84 0.63
65 3 0.02
66 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (63 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTATTATTAATGGG
Found at i:729833 original size:27 final size:27
Alignment explanation
Indices: 729802--729881 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
729792 TGCTTCCCTG
729802 ACTTATTCTTTGTTGTCATCATCAGAA
1 ACTTATTCTTTGTTGTCATCATCAGAA
* *
729829 ACTTACTT-TTTAATT-TC--C--CTG--
1 ACTTA-TTCTTT-GTTGTCATCATCAGAA
729850 ACTTATTCTTTGTTGTCATCATCAGAA
1 ACTTATTCTTTGTTGTCATCATCAGAA
729877 ACTTA
1 ACTTA
729882 CTTTTCAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 20
0.62 0.06 0.32
Matches are distributed among these distances:
20 4 0.10
21 10 0.26
23 3 0.08
25 3 0.08
27 15 0.38
28 4 0.10
ACGTcount: A:0.25, C:0.20, G:0.09, T:0.46
Consensus pattern (27 bp):
ACTTATTCTTTGTTGTCATCATCAGAA
Found at i:729866 original size:48 final size:48
Alignment explanation
Indices: 729795--729886 Score: 184
Period size: 48 Copynumber: 1.9 Consensus size: 48
729785 CTTATGTTGC
729795 TTCCCTGACTTATTCTTTGTTGTCATCATCAGAAACTTACTTTTTAAT
1 TTCCCTGACTTATTCTTTGTTGTCATCATCAGAAACTTACTTTTTAAT
729843 TTCCCTGACTTATTCTTTGTTGTCATCATCAGAAACTTACTTTT
1 TTCCCTGACTTATTCTTTGTTGTCATCATCAGAAACTTACTTTT
729887 CAATCCTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.48
Consensus pattern (48 bp):
TTCCCTGACTTATTCTTTGTTGTCATCATCAGAAACTTACTTTTTAAT
Found at i:732188 original size:31 final size:31
Alignment explanation
Indices: 732142--732328 Score: 331
Period size: 31 Copynumber: 6.0 Consensus size: 31
732132 CCCGAAGGAC
*
732142 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
732173 CAATCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
732204 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
732235 CAGTCCATATGTCCCGAAGAACATAGGTAAG
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
732266 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
732297 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
732328 C
1 C
732329 CCTCGACCCT
Statistics
Matches: 150, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 149 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:733092 original size:64 final size:65
Alignment explanation
Indices: 732984--733204 Score: 225
Period size: 64 Copynumber: 3.4 Consensus size: 65
732974 TAATGAAGGT
* * ** * **
732984 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAAT-ATTATTGCTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* ** *
733048 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* * * * **
733112 ATGCATCGATGCACTACTTATGCATAGATGCATGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* * *
733175 AGTGCATCGATGCACTTCATGTGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
733205 ACACCTTCAA
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
63 3 0.02
64 124 0.94
65 5 0.04
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (65 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
Found at i:737537 original size:2 final size:2
Alignment explanation
Indices: 737530--737585 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
737520 TGATAGAATA
737530 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
737572 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
737586 CCACAAAACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:753909 original size:5 final size:5
Alignment explanation
Indices: 753899--753927 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
753889 TATCGAGCCT
753899 ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
753928 TTATTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:759843 original size:21 final size:21
Alignment explanation
Indices: 759819--759877 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
759809 GTTCGAGTTA
759819 TCCGCGACGGCCGCAATAGCG
1 TCCGCGACGGCCGCAATAGCG
* *
759840 TCCGCGACGACCGTAATAGCG
1 TCCGCGACGGCCGCAATAGCG
*
759861 CCCGCGACGGCCGCAAT
1 TCCGCGACGGCCGCAAT
759878 CACGATAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.20, C:0.39, G:0.31, T:0.10
Consensus pattern (21 bp):
TCCGCGACGGCCGCAATAGCG
Found at i:764231 original size:12 final size:12
Alignment explanation
Indices: 764210--764243 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
764200 ACCACATTTC
*
764210 CAATACCAAACA
1 CAATATCAAACA
764222 CAATATCAAACA
1 CAATATCAAACA
*
764234 CAATCTCAAA
1 CAATATCAAA
764244 ACCCGCAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:766718 original size:18 final size:18
Alignment explanation
Indices: 766695--766732 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
766685 AGTAAAAGGA
766695 AATCAAAAT-TGCAATCAC
1 AATCAAAATCT-CAATCAC
766713 AATCAAAATCTCAATCAC
1 AATCAAAATCTCAATCAC
766731 AA
1 AA
766733 CCGGCTTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.53, C:0.24, G:0.03, T:0.21
Consensus pattern (18 bp):
AATCAAAATCTCAATCAC
Found at i:767013 original size:29 final size:29
Alignment explanation
Indices: 766971--767036 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
766961 CAATTTTTTT
*
766971 GTTGCGATTGTTGCGAAAGTCAAATTCGC
1 GTTGCGATGGTTGCGAAAGTCAAATTCGC
*
767000 GTTGCGATGGTTGCGAAAGTCAAATTTGC
1 GTTGCGATGGTTGCGAAAGTCAAATTCGC
*
767029 ATTGCGAT
1 GTTGCGAT
767037 TTTCACGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (29 bp):
GTTGCGATGGTTGCGAAAGTCAAATTCGC
Found at i:767151 original size:20 final size:20
Alignment explanation
Indices: 767126--767174 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
767116 TGAAAGTATA
767126 CCTTCAACAGATCTTTTTTG
1 CCTTCAACAGATCTTTTTTG
767146 CCTTCAACAGATCTTTTTTG
1 CCTTCAACAGATCTTTTTTG
767166 CCTTCAACA
1 CCTTCAACA
767175 TAATGCAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.29, G:0.08, T:0.41
Consensus pattern (20 bp):
CCTTCAACAGATCTTTTTTG
Found at i:768619 original size:21 final size:21
Alignment explanation
Indices: 768593--768689 Score: 117
Period size: 21 Copynumber: 4.7 Consensus size: 21
768583 ATGAATCAGA
*
768593 CTCTTGAACGGTGAGAGTGGC
1 CTCTTGAACGATGAGAGTGGC
*
768614 CTCTTGAATGATGAGAGTGGC
1 CTCTTGAACGATGAGAGTGGC
* * *
768635 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGATGAGAGTGGC
*
768656 CTCTTGAAAGAT-AG-GTGGGC
1 CTCTTGAACGATGAGAGT-GGC
768676 CTCTTGAACGATGA
1 CTCTTGAACGATGA
768690 CAGGTGAATC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
19 1 0.02
20 15 0.24
21 47 0.75
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.25
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGTGGC
Found at i:768657 original size:42 final size:41
Alignment explanation
Indices: 768593--768685 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 41
768583 ATGAATCAGA
* *
768593 CTCTTGAACGGTGAGAGTGGCCTCTTGAATGATGAGAGT-GGC
1 CTCTTGAACGGTGAGAGAGGCCTCTTGAAAGAT-AG-GTGGGC
*
768635 CTCTTGAACGGTGGGAGAGGCCTCTTGAAAGATAGGTGGGC
1 CTCTTGAACGGTGAGAGAGGCCTCTTGAAAGATAGGTGGGC
768676 CTCTTGAACG
1 CTCTTGAACG
768686 ATGACAGGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 15 0.32
42 30 0.64
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (41 bp):
CTCTTGAACGGTGAGAGAGGCCTCTTGAAAGATAGGTGGGC
Found at i:769073 original size:63 final size:63
Alignment explanation
Indices: 768984--769105 Score: 149
Period size: 63 Copynumber: 1.9 Consensus size: 63
768974 CTTAGAGCGG
* * *
768984 CTACCTCATCACGTAAAGTAGATACCTCACCACGTAAAGCACCATTGTCATCGCGTAAAACAT
1 CTACCTCACCACGTAAAGTAGATACCTCACCACGCAAAGCACCATTGTCATCACGTAAAACAT
* * * *
769047 CTACCTCACCACGTAAAG-ACCG-TACCTCATCACGCCATGCACCATTGTCGTCACGTAAA
1 CTACCTCACCACGTAAAGTA--GATACCTCACCACGCAAAGCACCATTGTCATCACGTAAA
769106 GTATCAACCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
62 1 0.02
63 48 0.96
64 1 0.02
ACGTcount: A:0.32, C:0.34, G:0.13, T:0.21
Consensus pattern (63 bp):
CTACCTCACCACGTAAAGTAGATACCTCACCACGCAAAGCACCATTGTCATCACGTAAAACAT
Found at i:769116 original size:63 final size:63
Alignment explanation
Indices: 769022--769143 Score: 149
Period size: 63 Copynumber: 1.9 Consensus size: 63
769012 ACCACGTAAA
* * *
769022 GCACCATTGTCATCGCGTAAAACATCTACCTCAC-CACGTAAAG-ACCGTACCTCATCACGCCAT
1 GCACCATTGTCATCACGTAAAACATCAACCTC-CTCACGCAAAGCACCG-ACCTCATCACGCCAT
* ** *
769085 GCACCATTGTCGTCACGTAAAGTATCAACCTCCTCACGCAAAGCACTGACCTCATCACG
1 GCACCATTGTCATCACGTAAAACATCAACCTCCTCACGCAAAGCACCGACCTCATCACG
769144 TAACTCCCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
62 1 0.02
63 46 0.92
64 3 0.06
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.20
Consensus pattern (63 bp):
GCACCATTGTCATCACGTAAAACATCAACCTCCTCACGCAAAGCACCGACCTCATCACGCCAT
Found at i:771253 original size:22 final size:22
Alignment explanation
Indices: 771227--771283 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
771217 GATGGAGATA
*
771227 GACGGATTTCGCCAGAGATGGG
1 GACGGATTTCGCCAGAGATAGG
* *
771249 GACGGATTTCGTCGGAGATAGG
1 GACGGATTTCGCCAGAGATAGG
*
771271 GACGGATGTCGCC
1 GACGGATTTCGCC
771284 GTAGAGAGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.19, G:0.40, T:0.19
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATAGG
Found at i:771459 original size:20 final size:20
Alignment explanation
Indices: 771434--771478 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
771424 CGCGCTTTGT
*
771434 GAATTTGACTTCTGTGTTAC
1 GAATTTGACTTATGTGTTAC
*
771454 GAATTTGACTTATGTGTTGC
1 GAATTTGACTTATGTGTTAC
771474 GAATT
1 GAATT
771479 ACAAATTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (20 bp):
GAATTTGACTTATGTGTTAC
Found at i:771492 original size:20 final size:20
Alignment explanation
Indices: 771469--771538 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
771459 TGACTTATGT
*
771469 GTTGCGAATTACAAATTCAC
1 GTTGCGAATTACAAATTCGC
* *
771489 GTTGCGATTTACAGATTCGC
1 GTTGCGAATTACAAATTCGC
* *
771509 GTTGCGATTTACATATTCGC
1 GTTGCGAATTACAAATTCGC
*
771529 ATTGCGAATT
1 GTTGCGAATT
771539 TGGAAACTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (20 bp):
GTTGCGAATTACAAATTCGC
Found at i:777930 original size:2 final size:2
Alignment explanation
Indices: 777925--777967 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
777915 CTCTTTTTTC
*
777925 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
777967 T
1 T
777968 GGAAGTTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:783389 original size:18 final size:18
Alignment explanation
Indices: 783368--783402 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
783358 CTCTCTCTTT
*
783368 GTAATATTTTCTCTATTG
1 GTAATATTTCCTCTATTG
783386 GTAATATTTCCTCTATT
1 GTAATATTTCCTCTATT
783403 AGTGAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (18 bp):
GTAATATTTCCTCTATTG
Found at i:783413 original size:20 final size:18
Alignment explanation
Indices: 783370--783413 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
783360 CTCTCTTTGT
* *
783370 AATATTTTCTCTATTGGT
1 AATATTTCCTCTATTGGA
783388 AATATTTCCTCTATTAGTGA
1 AATATTTCCTCTATT-G-GA
783408 AATATT
1 AATATT
783414 ATTTTAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 14 0.64
19 1 0.05
20 7 0.32
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (18 bp):
AATATTTCCTCTATTGGA
Found at i:786130 original size:14 final size:14
Alignment explanation
Indices: 786111--786175 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 14
786101 CTGGGCATCT
786111 GAGGCCATCCGACC
1 GAGGCCATCCGACC
*
786125 GAGGCCATTCGAGAGCATCC
1 GAGGCCA-TC---CG-A-CC
786145 GAGGCCATCCGACC
1 GAGGCCATCCGACC
*
786159 GAGGCCATCCGAAC
1 GAGGCCATCCGACC
786173 GAG
1 GAG
786176 CTATGCGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
14 25 0.60
15 3 0.07
16 1 0.02
18 1 0.02
19 3 0.07
20 9 0.21
ACGTcount: A:0.25, C:0.35, G:0.31, T:0.09
Consensus pattern (14 bp):
GAGGCCATCCGACC
Found at i:786209 original size:33 final size:33
Alignment explanation
Indices: 786157--786241 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
786147 GGCCATCCGA
* * * * *
786157 CCGAGGCCATCCGAACGAGCTATGCGAGGGCAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAAGGAAT
786190 CCGAGGGCAACCGAGCGAGCTATGCGAAGGAAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAAGGAAT
786223 CCGAGGG-AAGCCGAGCGAG
1 CCGAGGGCAA-CCGAGCGAG
786242 GGTAGGTCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.04
33 44 0.96
ACGTcount: A:0.27, C:0.27, G:0.38, T:0.08
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGCGAAGGAAT
Found at i:786278 original size:29 final size:29
Alignment explanation
Indices: 786245--786300 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
786235 GAGCGAGGGT
*
786245 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGGGCATGGCGACCTACA
786274 AGGTCGCCCGGAGGGCATGGCGACCTA
1 AGGTCGCCCGGAGGGCATGGCGACCTA
786301 TGTGTTGGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.38, T:0.12
Consensus pattern (29 bp):
AGGTCGCCCGGAGGGCATGGCGACCTACA
Found at i:786401 original size:29 final size:29
Alignment explanation
Indices: 786359--786415 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
786349 GAGCAAGGGT
*
786359 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCAGGAGTGCATGGCGACCTACA
786388 AGGTCGCCAGGAGTGCATGGCGACCTAC
1 AGGTCGCCAGGAGTGCATGGCGACCTAC
786416 GGCCTATGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.30, G:0.35, T:0.14
Consensus pattern (29 bp):
AGGTCGCCAGGAGTGCATGGCGACCTACA
Found at i:792287 original size:7 final size:7
Alignment explanation
Indices: 792277--792304 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
792267 ACATGAAAAG
792277 ATGGAAA
1 ATGGAAA
792284 ATGGAAA
1 ATGGAAA
792291 ATGGAAA
1 ATGGAAA
792298 ATGGAAA
1 ATGGAAA
792305 TCAAAGTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14
Consensus pattern (7 bp):
ATGGAAA
Found at i:799568 original size:2 final size:2
Alignment explanation
Indices: 799561--799586 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
799551 CAGTAAAACG
799561 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
799587 AAAATCCACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:800631 original size:18 final size:19
Alignment explanation
Indices: 800594--800634 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
800584 AAAATATTAA
*
800594 AATAATTTATATGAAATTT
1 AATAATTTATATCAAATTT
*
800613 AATAATTTA-ATCTAATTT
1 AATAATTTATATCAAATTT
800631 AATA
1 AATA
800635 TTAAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
AATAATTTATATCAAATTT
Found at i:818472 original size:17 final size:16
Alignment explanation
Indices: 818450--818483 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
818440 TTAGAATAAT
818450 AAAAAATGAATAATTAA
1 AAAAAAT-AATAATTAA
*
818467 AAAAAATTATAATTAA
1 AAAAAATAATAATTAA
818483 A
1 A
818484 TTAAAAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAAATAATAATTAA
Found at i:818503 original size:21 final size:21
Alignment explanation
Indices: 818461--818500 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
818451 AAAAATGAAT
*
818461 AATTAAAAAAAATTATAATTA
1 AATTAAAAAAAATTAAAATTA
*
818482 AATT-AAAAGAATTAAAATT
1 AATTAAAAAAAATTAAAATT
818501 TAATGCTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AATTAAAAAAAATTAAAATTA
Found at i:823124 original size:22 final size:22
Alignment explanation
Indices: 823082--823127 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
823072 CTATAAAAAT
823082 TTAAAATTAAATTTATCTATACA
1 TTAAAATTAAATTTA-CTATACA
*
823105 TTAAATATTAACTTTA-TATACA
1 TTAAA-ATTAAATTTACTATACA
823127 T
1 T
823128 GGTATGGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 5 0.24
24 9 0.43
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAAAATTAAATTTACTATACA
Found at i:825492 original size:64 final size:63
Alignment explanation
Indices: 825411--825547 Score: 150
Period size: 64 Copynumber: 2.2 Consensus size: 63
825401 GGCAAGGTGT
* * *
825411 ATCGATGCACTCTTTAAAGAAG-AAACACCGAATGCAATTGGTGCATCGATGCATAAGGAGTGC
1 ATCGATGCACCCCTTAAA-AAGAAAACACCGAAGGCAATTGGTGCATCGATGCATAAGGAGTGC
* * * * * ** *
825474 ATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGCGTAGTGC
1 ATCGATGCA-CCCCTTAAAAAGAAAACACCGAAGGCAATTGGTGCATCGATGCATAAGGAGTGC
825538 ATCGATGCAC
1 ATCGATGCAC
825548 ATGTTAAAGA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
63 12 0.20
64 49 0.80
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (63 bp):
ATCGATGCACCCCTTAAAAAGAAAACACCGAAGGCAATTGGTGCATCGATGCATAAGGAGTGC
Found at i:826843 original size:20 final size:20
Alignment explanation
Indices: 826820--826877 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
826810 GAGGGATTAT
826820 CAGTGGTCCTTCGGGACAAA
1 CAGTGGTCCTTCGGGACAAA
826840 CAGTGGTCCTTCGGGAC--A
1 CAGTGGTCCTTCGGGACAAA
*
826858 TAGTGG-CCATTCGGGACAAA
1 CAGTGGTCC-TTCGGGACAAA
826878 TATTCAGTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
17 2 0.06
18 14 0.41
20 18 0.53
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (20 bp):
CAGTGGTCCTTCGGGACAAA
Found at i:829777 original size:130 final size:130
Alignment explanation
Indices: 829596--829859 Score: 528
Period size: 130 Copynumber: 2.0 Consensus size: 130
829586 ATGATTTATT
829596 TAGAAATAAATCATAAAAGTTGTTAGTAATTATAAGACGAATTGAAGGGCAAAAGGGTTATTTGA
1 TAGAAATAAATCATAAAAGTTGTTAGTAATTATAAGACGAATTGAAGGGCAAAAGGGTTATTTGA
829661 CAAAGAAGATTTTTTTTATTTTCCTTATAAGATAAGGAAATCACGTGGGAAGAGAAAAAAGGTTC
66 CAAAGAAGATTTTTTTTATTTTCCTTATAAGATAAGGAAATCACGTGGGAAGAGAAAAAAGGTTC
829726 TAGAAATAAATCATAAAAGTTGTTAGTAATTATAAGACGAATTGAAGGGCAAAAGGGTTATTTGA
1 TAGAAATAAATCATAAAAGTTGTTAGTAATTATAAGACGAATTGAAGGGCAAAAGGGTTATTTGA
829791 CAAAGAAGATTTTTTTTATTTTCCTTATAAGATAAGGAAATCACGTGGGAAGAGAAAAAAGGTTC
66 CAAAGAAGATTTTTTTTATTTTCCTTATAAGATAAGGAAATCACGTGGGAAGAGAAAAAAGGTTC
829856 TAGA
1 TAGA
829860 GTTCTATTCT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 134 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (130 bp):
TAGAAATAAATCATAAAAGTTGTTAGTAATTATAAGACGAATTGAAGGGCAAAAGGGTTATTTGA
CAAAGAAGATTTTTTTTATTTTCCTTATAAGATAAGGAAATCACGTGGGAAGAGAAAAAAGGTTC
Found at i:830422 original size:64 final size:63
Alignment explanation
Indices: 830341--830477 Score: 152
Period size: 64 Copynumber: 2.2 Consensus size: 63
830331 GGCAAGGTGT
* * *
830341 ATCGATGCACTCTTTAAAGAAG-AAACACCGAATGCAATTGGTGCATCGATGCATAAGG-AGTGC
1 ATCGATGCACCCCTTAAA-AAGAAAACACCGAAGGCAATTGGTGCATCGATGCAT-AGGTAGTGC
* * * * * *
830404 ATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGGGTAGTGC
1 ATCGATGCA-CCCCTTAAAAAGAAAACACCGAAGGCAATTGGTGCATCGATGCATAGGTAGTGC
830468 ATCGATGCAC
1 ATCGATGCAC
830478 ATGTTAAAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
63 14 0.23
64 48 0.77
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (63 bp):
ATCGATGCACCCCTTAAAAAGAAAACACCGAAGGCAATTGGTGCATCGATGCATAGGTAGTGC
Found at i:830510 original size:20 final size:22
Alignment explanation
Indices: 830465--830522 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
830455 GCATGGGTAG
830465 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
830489 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
830509 TGCATCGATGCACT
1 TGCATCGATGCACT
830523 TCAAAGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:831814 original size:18 final size:18
Alignment explanation
Indices: 831771--831843 Score: 110
Period size: 18 Copynumber: 3.9 Consensus size: 18
831761 AGGGATTATC
*
831771 AGTGGTCCTTCGGGACAAAC
1 AGTGGTCCTTCGGGAC--AT
831791 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
831809 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
831827 AGTGGTCATTCGGGACA
1 AGTGGTCCTTCGGGACA
831844 AATATTCAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 35 0.69
20 16 0.31
ACGTcount: A:0.21, C:0.22, G:0.33, T:0.25
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:832216 original size:4 final size:4
Alignment explanation
Indices: 832209--832263 Score: 101
Period size: 4 Copynumber: 13.5 Consensus size: 4
832199 TGATAATGAC
832209 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
832257 AGTGT AT
1 A-TGT AT
832264 TTGTTAGATG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 46 0.92
5 4 0.08
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:842218 original size:65 final size:64
Alignment explanation
Indices: 842077--842236 Score: 184
Period size: 65 Copynumber: 2.5 Consensus size: 64
842067 TGCACTAAGT
* * * *
842077 GTGCATCA-ATGCATCAAATGCATTCGATGTTTTGAAAAAGCCTAAGTTCATCGATGCATGGTAT
1 GTGCAT-AGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCCAAGTGCATCGATGCATGGTAA
* *
842141 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATTAAAA-CCCGAGTGCATCGATGCATGG-A
1 GTGCATAGATGCATCAAATGCATTCGATGTTTTCA--AAAAGCCCAAGTGCATCGATGCATGGTA
842204 GA
64 -A
*
842206 GTGCATAGATGCAT-AAACTGCACTCGATGTT
1 GTGCATAGATGCATCAAA-TGCATTCGATGTT
842237 CAATTTATTC
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
64 36 0.43
65 43 0.52
66 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (64 bp):
GTGCATAGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCCAAGTGCATCGATGCATGGTAA
Found at i:843005 original size:21 final size:20
Alignment explanation
Indices: 842981--843026 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
842971 TTGCTTTGGG
842981 TTTTATAAAAGTTTTCTTTT
1 TTTTATAAAAGTTTTCTTTT
*
843001 CTTTT-TCAAAGTTTTCTTTT
1 -TTTTATAAAAGTTTTCTTTT
843021 TTTTAT
1 TTTTAT
843027 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 15 0.65
21 4 0.17
ACGTcount: A:0.20, C:0.09, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTATAAAAGTTTTCTTTT
Found at i:844212 original size:20 final size:20
Alignment explanation
Indices: 844187--844224 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
844177 TAATGAAAAA
*
844187 ATAATTCTTAAAAATAATAG
1 ATAATTCCTAAAAATAATAG
*
844207 ATAATTCCTAAAGATAAT
1 ATAATTCCTAAAAATAAT
844225 TCTTGAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
ATAATTCCTAAAAATAATAG
Found at i:855442 original size:147 final size:144
Alignment explanation
Indices: 855156--855446 Score: 368
Period size: 147 Copynumber: 2.0 Consensus size: 144
855146 TCCATTCTAA
* * * *
855156 AGCATTTCATCAAACATCTTCATTTCAGTGCATGTGCCTTCTAGTTGATTTCGTAAGTCCATTCG
1 AGCATTTCATCAAACATCTTCATTTCAGTGCACGTGCCTTCTAGTTCATTTAGTAAGTCCATACG
* * * * *
855221 CAGCTGTTCCATTGAGCTTTCGACCATGGATTCAAACTGCGCCAATCTCTTTCGAAGCTTAAATA
66 CAGCTGTTCCATTGAACTTTCGACCATGGATTCAAACTGCACAAATCTCTTCCGAAGCTGAAATA
855286 CTTCCTCCTTCAAT
131 CTTCCTCCTTCAAT
* *
855300 AGCATTTTATCAAACATCTTCTTCATTTGAGTGCACGTGCCTTCTAGTTCATTTAGTAAGTCCAT
1 AGCATTTCATCAAACA---TCTTCATTTCAGTGCACGTGCCTTCTAGTTCATTTAGTAAGTCCAT
* * * * * * *
855365 ACGCAGCTGTTCCGTTGAACTTTC-AGTCGTGGATTCAAGCTTCACAAATCTCTTCCTAATCTGA
63 ACGCAGCTGTTCCATTGAACTTTCGA-CCATGGATTCAAACTGCACAAATCTCTTCCGAAGCTGA
*
855429 AATACTTCTTCCTTCAAT
127 AATACTTCCTCCTTCAAT
855447 TGCAAAATCA
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
144 15 0.12
146 1 0.01
147 108 0.87
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (144 bp):
AGCATTTCATCAAACATCTTCATTTCAGTGCACGTGCCTTCTAGTTCATTTAGTAAGTCCATACG
CAGCTGTTCCATTGAACTTTCGACCATGGATTCAAACTGCACAAATCTCTTCCGAAGCTGAAATA
CTTCCTCCTTCAAT
Found at i:857305 original size:60 final size:60
Alignment explanation
Indices: 857239--857379 Score: 148
Period size: 60 Copynumber: 2.4 Consensus size: 60
857229 AAATTTTGGG
* *
857239 ATAAAATTGAAAAT-TTTAAAAGTTTAAAGATCAATTTAGAATGAAGA-TCAAAG-TTTAGGA
1 ATAAAATTGAAAATGTTCAAAAATTTAAAGATCAATTTAG-AT-AAGAGTCAAAGATTTA-GA
* * * *
857299 ATAAAATTG-AAATGTTCAAAAATTTAATGATTAGTTTAGATAAGAGTCATAGATTTAGA
1 ATAAAATTGAAAATGTTCAAAAATTTAAAGATCAATTTAGATAAGAGTCAAAGATTTAGA
*
857358 ATGAAAATTG-AAATATTCAAAA
1 AT-AAAATTGAAAATGTTCAAAA
857380 GATAGAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
58 4 0.06
59 15 0.21
60 51 0.73
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.33
Consensus pattern (60 bp):
ATAAAATTGAAAATGTTCAAAAATTTAAAGATCAATTTAGATAAGAGTCAAAGATTTAGA
Found at i:861979 original size:60 final size:60
Alignment explanation
Indices: 861915--862037 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 60
861905 GTCGTCTCAT
* * * * **
861915 TATAAGGTGTTGTTTTATTGAATCTTCTAACAATTGAAAGTAACAAAATGGTCCCTCGAC
1 TATAAGATGTTGTTTTATTGAATCCTCCAACAATTAAAAGTAACAAAATGGTCAATCGAC
* * * *
861975 TATAAGATGTTGTTTTATTGAGTCCTCCAACTATTAAAAGTTATAAAATGGTCAATCGAC
1 TATAAGATGTTGTTTTATTGAATCCTCCAACAATTAAAAGTAACAAAATGGTCAATCGAC
862035 TAT
1 TAT
862038 TCATATGTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (60 bp):
TATAAGATGTTGTTTTATTGAATCCTCCAACAATTAAAAGTAACAAAATGGTCAATCGAC
Found at i:862538 original size:14 final size:14
Alignment explanation
Indices: 862519--862552 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
862509 TAAATCATGA
862519 TATTGATAATTTTT
1 TATTGATAATTTTT
862533 TATTGATAATTTTT
1 TATTGATAATTTTT
862547 TATTGA
1 TATTGA
862553 ATTATATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (14 bp):
TATTGATAATTTTT
Found at i:872028 original size:62 final size:62
Alignment explanation
Indices: 871931--872073 Score: 250
Period size: 62 Copynumber: 2.3 Consensus size: 62
871921 AACGCGAACT
* * *
871931 TCGACTATCGCAATGCGAACTTGGACTATCTCAATGCGAATATGTAAATCGCAATGCGATAG
1 TCGACTAACGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAG
*
871993 TCGACTAGCGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAG
1 TCGACTAACGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAG
872055 TCGACTAACGCAATGCGAA
1 TCGACTAACGCAATGCGAA
872074 TATGTAAATC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 77 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (62 bp):
TCGACTAACGCAATGCGAACTTAGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAG
Found at i:872046 original size:41 final size:41
Alignment explanation
Indices: 872016--872114 Score: 180
Period size: 41 Copynumber: 2.4 Consensus size: 41
872006 TGCGAACTTA
872016 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
*
872057 GACTAACGCAATGCGAATATGTAAATCGCAATGCGATAGTC
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
*
872098 GACTATCGCAATACGAA
1 GACTATCGCAATGCGAA
872115 CTTCGACTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (41 bp):
GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
Found at i:872050 original size:103 final size:103
Alignment explanation
Indices: 871962--872159 Score: 369
Period size: 103 Copynumber: 1.9 Consensus size: 103
871952 TGGACTATCT
*
871962 CAATGCGAATATGTAAATCGCAATGCGATAGTCGACTAGCGCAATGCGAACTTAGACTATCGCAA
1 CAATGCGAATATGTAAATCGCAATGCGATAGTCGACTAGCGCAATACGAACTTAGACTATCGCAA
872027 TGCGAATATGTAAATCGCAATGCGATAGTCGACTAACG
66 TGCGAATATGTAAATCGCAATGCGATAGTCGACTAACG
* *
872065 CAATGCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATACGAACTTCGACTATCGCAA
1 CAATGCGAATATGTAAATCGCAATGCGATAGTCGACTAGCGCAATACGAACTTAGACTATCGCAA
872130 TGCGAATATGTAAATCGCAATGCGATAGTC
66 TGCGAATATGTAAATCGCAATGCGATAGTC
872160 CAAGTTCGCG
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 92 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (103 bp):
CAATGCGAATATGTAAATCGCAATGCGATAGTCGACTAGCGCAATACGAACTTAGACTATCGCAA
TGCGAATATGTAAATCGCAATGCGATAGTCGACTAACG
Found at i:872106 original size:62 final size:62
Alignment explanation
Indices: 871931--872159 Score: 224
Period size: 62 Copynumber: 3.7 Consensus size: 62
871921 AACGCGAACT
* * * *
871931 TCGACTATCGCAATGCGAACT-TGGACTATCTCAATGCGAATA-T-GTAAATCGCAATGCGATAG
1 TCGACTAACGCAATGCGAA-TATGTA-AATCGCAATGCG-ATAGTCGTAAATCGCAATGCGATAG
* *
871993 TCGACTAGCGCAATGCGAACT-TAG-ACTATCGCAATGCGAATA-T-GTAAATCGCAATGCGATA
1 TCGACTAACGCAATGCGAA-TAT-GTA-AATCGCAATGCG-ATAGTCGTAAATCGCAATGCGATA
872054 G
62 G
* * *
872055 TCGACTAACGCAATGCGAATATGTAAATCGCAATGCGATAGTCG-ACTATCGCAATACGA-ACT
1 TCGACTAACGCAATGCGAATATGTAAATCGCAATGCGATAGTCGTA-AATCGCAATGCGATA-G
*
872117 TCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
1 TCGACTAACGCAATGCGAATATGTAAATCGCAATGCGATAGTC
872160 CAAGTTCGCG
Statistics
Matches: 152, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
60 3 0.02
61 16 0.11
62 132 0.87
63 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (62 bp):
TCGACTAACGCAATGCGAATATGTAAATCGCAATGCGATAGTCGTAAATCGCAATGCGATAG
Found at i:872830 original size:6 final size:6
Alignment explanation
Indices: 872799--872840 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
872789 TCTCGTCTCG
*
872799 GGTCG- GGTCG- GGTCG- GGTCGT TGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
872841 AATACGTGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 15 0.44
6 19 0.56
ACGTcount: A:0.00, C:0.17, G:0.52, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:872966 original size:42 final size:42
Alignment explanation
Indices: 872902--873055 Score: 242
Period size: 42 Copynumber: 3.7 Consensus size: 42
872892 CTTAAGAAAC
872902 AAATCGCAA--CGAACTT-GAACTATCGCAACGAATTTGGAAT
1 AAATCGCAACGCGAACTTCG-ACTATCGCAACGAATTTGGAAT
*
872942 AAATCGCAACGCGAACTTCGACTATCGCAATGAATTTGGAAT
1 AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAT
*
872984 AAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAT
1 AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAT
* *
873026 AAATCGCAACGCAAACTTGGACTATCGCAA
1 AAATCGCAACGCGAACTTCGACTATCGCAA
873056 TGCGAATATG
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
40 9 0.08
42 96 0.91
43 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (42 bp):
AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAT
Found at i:873052 original size:21 final size:19
Alignment explanation
Indices: 872904--873055 Score: 115
Period size: 21 Copynumber: 7.4 Consensus size: 19
872894 TAAGAAACAA
*
872904 ATCGCAACGAACTTGAACT
1 ATCGCAACGAACTTGGACT
* *
872923 ATCGCAACGAATTTGGAAT
1 ATCGCAACGAACTTGGACT
*
872942 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAA--CGAACTTGGACT
* * *
872965 ATCGCAATGAATTTGGAAT
1 ATCGCAACGAACTTGGACT
*
872984 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAA--CGAACTTGGACT
*
873007 ATCGCAACGAACTTGGAAT
1 ATCGCAACGAACTTGGACT
873026 AAATCGCAACGCAAACTTGGACT
1 --ATCGCAACG--AACTTGGACT
873049 ATCGCAA
1 ATCGCAA
873056 TGCGAATATG
Statistics
Matches: 104, Mismatches: 17, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
19 34 0.33
21 44 0.42
23 26 0.25
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (19 bp):
ATCGCAACGAACTTGGACT
Found at i:881920 original size:14 final size:14
Alignment explanation
Indices: 881901--881940 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
881891 TATTCCTTTT
881901 TTATTTATATTATA
1 TTATTTATATTATA
*
881915 TTATTTTTATTATA
1 TTATTTATATTATA
881929 TATATCTTATAT
1 T-TAT-TTATAT
881941 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:882070 original size:37 final size:40
Alignment explanation
Indices: 881995--882073 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
881985 ATTTACTATG
* *
881995 TATATATATTTTTTCTTAATATTATATTTTATACGTTTTTA
1 TATAAATATATTTTCTTAATATTATATTTTATA-GTTTTTA
*
882036 TATAAATATATTTT-TTAATATTCTATTTT-T-GTTTTTA
1 TATAAATATATTTTCTTAATATTATATTTTATAGTTTTTA
882073 T
1 T
882074 TTATTTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 8 0.23
39 1 0.03
40 14 0.40
41 12 0.34
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.65
Consensus pattern (40 bp):
TATAAATATATTTTCTTAATATTATATTTTATAGTTTTTA
Found at i:882105 original size:29 final size:28
Alignment explanation
Indices: 882069--882123 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
882059 TATTTTTGTT
882069 TTTATTTATTTATATATATTATTTTTAC
1 TTTATTTATTTATATATATTATTTTTAC
* * *
882097 TTTATTTTATTTTTTTCTATTATTTTT
1 TTTA-TTTATTTATATATATTATTTTT
882124 TTTCTTAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTATTTATTTATATATATTATTTTTAC
Found at i:882156 original size:36 final size:35
Alignment explanation
Indices: 882116--882198 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 35
882106 TTTTTTTCTA
*
882116 TTATTTTTTTTCTTAATATCATGTATATCT-TTATTT
1 TTATTTTTTTTCTTAATAT--TATATATCTATTATTT
* * *
882152 TTATTTCTTTTACTTAGTATTATATATTTATTATTT
1 TTATTT-TTTTTCTTAATATTATATATCTATTATTT
*
882188 TTATTTGTTTT
1 TTATTTTTTTT
882199 AGTAAATACT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
35 10 0.26
36 18 0.46
37 11 0.28
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (35 bp):
TTATTTTTTTTCTTAATATTATATATCTATTATTT
Found at i:885431 original size:13 final size:13
Alignment explanation
Indices: 885413--885459 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
885403 GAACAAAAAG
885413 AGAAAAAAAACAA
1 AGAAAAAAAACAA
885426 AGAAAAAAGAA-AA
1 AGAAAAAA-AACAA
885439 AGAAAAAGAAACAA
1 AGAAAAA-AAACAA
*
885453 AGGAAAA
1 AGAAAAA
885460 TTGAAGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAACAA
Found at i:885471 original size:32 final size:27
Alignment explanation
Indices: 885407--885476 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 27
885397 CAATCAGAAC
885407 AAAAAGAGAAAAAAAACAAAGAAAAAAG
1 AAAAA-AGAAAAAAAACAAAGAAAAAAG
885435 -AAAAAGAAAAAGAAACAAAGGAAAATTGAAG
1 AAAAAAGAAAAA-AAACAAA-GAAAA---AAG
885466 AAAAAAGAAAA
1 AAAAAAGAAAA
885477 CAATATGCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
26 7 0.19
27 11 0.31
28 5 0.14
31 3 0.08
32 10 0.28
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.03
Consensus pattern (27 bp):
AAAAAAGAAAAAAAACAAAGAAAAAAG
Found at i:885650 original size:69 final size:69
Alignment explanation
Indices: 885533--885675 Score: 236
Period size: 69 Copynumber: 2.1 Consensus size: 69
885523 ATTCAAACTA
*
885533 TGAGATTGATCAAGCACAATCATTTTCGAATCACTGAACCACTTCACTCGAAGATCATAGAGCAT
1 TGAGATTGATCAAGCACAATCATTTTCGAATCACTGAACCACTCCACTCGAAGATCATAGAGCAT
885598 CAAG
66 CAAG
885602 TGAGATTGATCAAGCACAATCA-TTTCTGAATCACTG-ACTCACTCCACTCGAAGATCATAGAGC
1 TGAGATTGATCAAGCACAATCATTTTC-GAATCACTGAAC-CACTCCACTCGAAGATCATAGAGC
885665 ATCAAG
64 ATCAAG
*
885671 AGAGA
1 TGAGA
885676 GACACATACG
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
68 6 0.09
69 64 0.91
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (69 bp):
TGAGATTGATCAAGCACAATCATTTTCGAATCACTGAACCACTCCACTCGAAGATCATAGAGCAT
CAAG
Found at i:887221 original size:36 final size:36
Alignment explanation
Indices: 887174--887363 Score: 164
Period size: 36 Copynumber: 5.4 Consensus size: 36
887164 ATTGAAAACA
*
887174 TTTCCCTTGAAACAAATTTTGTCTCTCCTGAGACAG
1 TTTCCCTTGAAACAAATTTTATCTCTCCTGAGACAG
*
887210 TTTCCCTTGAAACAAA--TTA--T-T--TGA-ATATG
1 TTTCCCTTGAAACAAATTTTATCTCTCCTGAGACA-G
*** *
887239 TTTTATTTGAAACAAATTTCATCTC-CCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTATCTCTCC-TGAGACAG
** * * *
887275 TTTCTTTTGGAACTAAGTTTTATCTCTCTTGAGACAG
1 TTTCCCTTGAAAC-AAATTTTATCTCTCCTGAGACAG
* * *
887312 TTTCTCTTGAAACAAATTTCATCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTATCTCTCCTGAGACAG
887348 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
887364 ATCTTTGAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
28 2 0.02
29 17 0.14
31 3 0.02
32 1 0.01
33 1 0.01
34 2 0.02
36 66 0.53
37 31 0.25
38 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTATCTCTCCTGAGACAG
Found at i:887234 original size:65 final size:65
Alignment explanation
Indices: 887108--887531 Score: 284
Period size: 65 Copynumber: 6.3 Consensus size: 65
887098 CATGAGATAG
* *
887108 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA-TTGAAAA
1 TTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAATATTTGAATA
887172 CA
64 CA
* * *
887174 TTTCCCTTGAAACAAATTTTGTCTCTCC-TGAGACAGTTTCCCTTGAAACAAATTATTTGAATAT
1 TTTCCCTTGAAACAAATTTTGTCTC-CCTTGAGACAGTTTCTCTTGAAACAAAATATTTGAATAC
*
887238 G
65 A
*** ** * * * *
887239 TTTTATTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTATCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AA-----A-ATAT-T
*
887304 TG-AGACA
58 TGAATACA
* ** * * * **
887311 GTTTCTCTTGAAACAAATTTCATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTT
1 -TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATATTTGAATAC
887376 A
65 A
* * * *
887377 TTTCCCCCTAAAACAAATTTTGTCTCCCTTTAGACAGTTTCTCTTGAAACACAAA-ATCTTCAAA
1 TTT-CCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAATAT-TT-GAA
**
887441 TTTA
62 TACA
* * * *
887445 TTTCCCTTAAAACAAAATTTTGTTTCCCTTGAGACCGTTT-TCATGAAACAACAAATATCTTTGA
1 TTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-A-AAATA--TTTGA
*
887509 GAT-CG
61 -ATACA
*
887514 TTTCCCTTGAAACGAATT
1 TTTCCCTTGAAACAAATT
887532 CTATCTCTTT
Statistics
Matches: 285, Mismatches: 50, Indels: 44
0.75 0.13 0.12
Matches are distributed among these distances:
64 5 0.02
65 83 0.29
66 62 0.22
67 23 0.08
68 41 0.14
69 14 0.05
70 4 0.01
71 2 0.01
72 6 0.02
73 45 0.16
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.38
Consensus pattern (65 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATATTTGAATACA
Found at i:887309 original size:37 final size:36
Alignment explanation
Indices: 887245--887363 Score: 175
Period size: 36 Copynumber: 3.3 Consensus size: 36
887235 TATGTTTTAT
* *
887245 TTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTT
1 TTGAAACAAATTTCATCTCTCTTGAGACAGTTTCTC
* * *
887281 TTGGAACTAAGTTTTATCTCTCTTGAGACAGTTTCTC
1 TTGAAAC-AAATTTCATCTCTCTTGAGACAGTTTCTC
*
887318 TTGAAACAAATTTCATCTCTCTTGAGACAGTTTCCC
1 TTGAAACAAATTTCATCTCTCTTGAGACAGTTTCTC
887354 TTGAAACAAA
1 TTGAAACAAA
887364 ATCTTTGAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
36 42 0.58
37 31 0.42
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.38
Consensus pattern (36 bp):
TTGAAACAAATTTCATCTCTCTTGAGACAGTTTCTC
Found at i:887463 original size:68 final size:68
Alignment explanation
Indices: 887321--887505 Score: 216
Period size: 68 Copynumber: 2.7 Consensus size: 68
887311 GTTTCTCTTG
** * * **
887321 AAACAAATTTCATCTCTCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATTTATTTCCCC
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCC
887384 CTA
66 CTA
*
887387 AAACAAATTTTGTCTCCCTTTAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTT-CCC
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCC
*
887451 TTA
66 CTA
* * *
887454 AAACAAAATTTTGTTTCCCTTGAGACCGTTT-TCATGAAACAACAAATATCTT
1 AAAC-AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-ACAAA-ATCTT
887506 TGAGATCGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
66 31 0.30
67 19 0.19
68 47 0.46
69 5 0.05
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (68 bp):
AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCC
CTA
Found at i:888225 original size:106 final size:106
Alignment explanation
Indices: 888095--888468 Score: 498
Period size: 106 Copynumber: 3.5 Consensus size: 106
888085 ATATCGTGCC
* * * * * * *
888095 ACTCGAGACAACACAAGTTTAACTTCACAACGACGGGACGGCTGGTTGTCAACAAATAATTTCCC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAACTTCCC
* * *
888160 AGTTTCATAACCAATTTCAACTTCACAGCGAAGGATATTGA
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
888201 ATTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCCC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAACTTCCC
*
888266 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
888307 ACTCAAGACAGCATAAGCTCAACTTCACAATGAAGGGGCGGCTGACTGTCAACAAACAACTTCCC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAACTTCCC
* * *
888372 AATTTCAGGACAAATTTCAACTTCCCAGCGAAGGATATTGG
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
888413 ACCCAAGACAACACAAGCTCAACTTCACGATGAAAGGGA-GGCTGATTGTCAACAAA
1 ACTCAAGACAACACAAGCTCAACTTCACAACG-AAGGGACGGCTGATTGTCAACAAA
888469 ATTTCCAGAG
Statistics
Matches: 239, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
106 234 0.98
107 5 0.02
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (106 bp):
ACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAACTTCCC
AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:889823 original size:20 final size:21
Alignment explanation
Indices: 889800--889867 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
889790 CCTATATACA
889800 TATTTTTAATTATATT-TTTT
1 TATTTTTAATTATATTATTTT
* *
889820 TATTTATTTACTATATTCATTTT
1 TATTT-TTAATTATATT-ATTTT
*
889843 T-TATTTATATTATATTATTTT
1 TATTTTTA-ATTATATTATTTT
889864 TATT
1 TATT
889868 ATATATATCT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
20 5 0.14
21 17 0.46
22 10 0.27
23 5 0.14
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTTTTAATTATATTATTTT
Found at i:889862 original size:14 final size:14
Alignment explanation
Indices: 889843--889882 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
889833 TATTCATTTT
889843 TTATTTATATTATA
1 TTATTTATATTATA
*
889857 TTATTTTTATTATA
1 TTATTTATATTATA
889871 TATATCTTATAT
1 T-TAT-TTATAT
889883 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:889880 original size:25 final size:24
Alignment explanation
Indices: 889809--889898 Score: 68
Period size: 22 Copynumber: 4.0 Consensus size: 24
889799 ATATTTTTAA
* *
889809 TTATATTTTTTTATT-TATTTA-C
1 TTATATTATTTTATTATATATATC
*
889831 -TATATTCATTTT-TTAT-T-TATA
1 TTATATT-ATTTTATTATATATATC
889852 TTATATTATTTTTATTATATATATC
1 TTATATTA-TTTTATTATATATATC
* *
889877 TTATATCATTATA-TATATATAT
1 TTATATTATTTTATTATATATAT
889899 GTATAGATAC
Statistics
Matches: 55, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
20 2 0.04
21 10 0.18
22 15 0.27
23 13 0.24
24 5 0.09
25 10 0.18
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATATTATTTTATTATATATATC
Found at i:890059 original size:16 final size:16
Alignment explanation
Indices: 890024--890061 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
890014 TTTATATATA
*
890024 TATTATATTTTTACTT
1 TATTTTATTTTTACTT
890040 TATTTTATTTTT-CTT
1 TATTTTATTTTTACTT
890055 CTATTTT
1 -TATTTT
890062 TTTCTTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTTTATTTTTACTT
Found at i:890204 original size:18 final size:17
Alignment explanation
Indices: 890177--890211 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
890167 TTTTTATTCC
890177 TTTTTAATTTCTTTTACT
1 TTTTTAATTT-TTTTACT
*
890195 TTTTTTATTTTTTTACT
1 TTTTTAATTTTTTTACT
890212 CCATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTAATTTTTTTACT
Found at i:890291 original size:19 final size:18
Alignment explanation
Indices: 890260--890299 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
890250 AACATTTTTA
*
890260 TTTTTATTTTTTTATTAT
1 TTTTTATTGTTTTATTAT
*
890278 TTTTTATGTGTTTTGTTAT
1 TTTTTAT-TGTTTTATTAT
890297 TTT
1 TTT
890300 CCATTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.80
Consensus pattern (18 bp):
TTTTTATTGTTTTATTAT
Found at i:890936 original size:2 final size:2
Alignment explanation
Indices: 890929--890962 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
890919 ATTGTCATCA
890929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
890963 TATCACTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:892284 original size:16 final size:16
Alignment explanation
Indices: 892263--892321 Score: 93
Period size: 16 Copynumber: 3.8 Consensus size: 16
892253 ATACATAACT
*
892263 TTTGAATCATTCAATA
1 TTTGAATCATTCAACA
892279 TTTGAATCATTCAACA
1 TTTGAATCATTCAACA
892295 TTTGAATCATTCAACA
1 TTTGAATCATTCAACA
*
892311 CTT-AATCATTC
1 TTTGAATCATTC
892322 TGAAATAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 8 0.20
16 33 0.80
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.41
Consensus pattern (16 bp):
TTTGAATCATTCAACA
Found at i:894352 original size:40 final size:42
Alignment explanation
Indices: 894274--894359 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
894264 GAAAATAGTT
*
894274 TATATATAATTCATATAAAAAATATAAAATATTATATATATA
1 TATATATAATTAATATAAAAAATATAAAATATTATATATATA
894316 TATATATAATTAATATAAAAAATATAAAATATTATATATATA
1 TATATATAATTAATATAAAAAATATAAAATATTATATATATA
894358 TA
1 TA
894360 ATCGGGGCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (42 bp):
TATATATAATTAATATAAAAAATATAAAATATTATATATATA
Found at i:910365 original size:13 final size:13
Alignment explanation
Indices: 910347--910371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
910337 TAGTTGAACT
910347 GTCTTCATATGCA
1 GTCTTCATATGCA
910360 GTCTTCATATGC
1 GTCTTCATATGC
910372 TCGTCTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (13 bp):
GTCTTCATATGCA
Found at i:919668 original size:39 final size:35
Alignment explanation
Indices: 919625--919717 Score: 114
Period size: 36 Copynumber: 2.5 Consensus size: 35
919615 ATTTAATGAA
919625 TTCAAACTTTCTTCTGGAGAGACGGGATTTAGAGTCACC
1 TTCAAACTTT-TTCTGGAGA-A-GGGATTT-GAGTCACC
*
919664 TTCAAACTTTATCATGGAGAAGGGATTTGAGTCACC
1 TTCAAACTTTTTC-TGGAGAAGGGATTTGAGTCACC
*
919700 TCCAAACTTTATTCTGGA
1 TTCAAACTTT-TTCTGGA
919718 CCAACTCCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
36 21 0.43
37 9 0.18
38 3 0.06
39 16 0.33
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (35 bp):
TTCAAACTTTTTCTGGAGAAGGGATTTGAGTCACC
Found at i:925403 original size:47 final size:46
Alignment explanation
Indices: 925295--925421 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 46
925285 ATAAATGCTT
* * *
925295 GCGAACTAGATATCATGCGGTTATGTTTA-TTTTTCAAATAAGCAT
1 GCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCAAACAAGCAC
* *
925340 GCAAACTAGATATCATGCGGTTAGGTTTATTTTTCTCGAACAAGCAC
1 GCGAACTAGATATCATGCGGTTAGGTTTATTTTT-TCAAACAAGCAC
* * *
925387 GCGAATTAGATATCATGCGATTAGGATTTCTTTTT
1 GCGAACTAGATATCATGCGGTTAGG-TTTATTTTT
925422 GTGAATGACA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 27 0.39
46 4 0.06
47 31 0.44
48 8 0.11
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (46 bp):
GCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCAAACAAGCAC
Found at i:931827 original size:18 final size:19
Alignment explanation
Indices: 931806--931852 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
931796 AGAAAAAGAA
931806 GAAAAAAAATGG-AAAAAT
1 GAAAAAAAATGGAAAAAAT
**
931824 GAAAAATGATGGAAAAAAT
1 GAAAAAAAATGGAAAAAAT
931843 GAAAAGAAAA
1 GAAAA-AAAA
931853 AAAGAAACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 10 0.43
19 11 0.48
20 2 0.09
ACGTcount: A:0.70, C:0.00, G:0.19, T:0.11
Consensus pattern (19 bp):
GAAAAAAAATGGAAAAAAT
Found at i:931829 original size:53 final size:52
Alignment explanation
Indices: 931751--931874 Score: 148
Period size: 53 Copynumber: 2.4 Consensus size: 52
931741 TCGCTTGAAG
* * *
931751 AAGAAATAAAAAAAGGGAGAAA--AAAAATAAT-AAAAAATGAAAAGAAGAAA
1 AAGAAACAAAAAAATGGAAAAATGAAAAATAATGAAAAAATGAAAAGAA-AAA
*
931801 AAGAAGA-AAAAAAATGGAAAAATGAAAAATGATGGAAAAAATGAAAAGAAAAA
1 AAGAA-ACAAAAAAATGGAAAAATGAAAAATAAT-GAAAAAATGAAAAGAAAAA
*
931854 AAGAAACAGAAAAATGGAAAA
1 AAGAAACAAAAAAATGGAAAA
931875 TGGAAGAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
50 18 0.28
51 1 0.02
52 9 0.14
53 21 0.33
54 15 0.23
ACGTcount: A:0.73, C:0.01, G:0.18, T:0.08
Consensus pattern (52 bp):
AAGAAACAAAAAAATGGAAAAATGAAAAATAATGAAAAAATGAAAAGAAAAA
Found at i:931849 original size:45 final size:45
Alignment explanation
Indices: 931799--931915 Score: 134
Period size: 45 Copynumber: 2.6 Consensus size: 45
931789 GAAAAGAAGA
** *
931799 AAAAGAAGAAAAA-AAATGGAAAAATGAAAAAT-GATGGAAAAAATG
1 AAAAGAA-AAAAAGAAACAGAAAAATGAAAAATGGA-AGAAAAAATG
*
931844 AAAAGAAAAAAAGAAACAGAAAAATGGAAAATGGAAGAAAAAATG
1 AAAAGAAAAAAAGAAACAGAAAAATGAAAAATGGAAGAAAAAATG
931889 AGAAAG-AAAAAAGAAGA-AGAAAAATGA
1 A-AAAGAAAAAAAGAA-ACAGAAAAATGA
931916 GAAAGAAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
44 5 0.08
45 51 0.81
46 7 0.11
ACGTcount: A:0.71, C:0.01, G:0.21, T:0.08
Consensus pattern (45 bp):
AAAAGAAAAAAAGAAACAGAAAAATGAAAAATGGAAGAAAAAATG
Found at i:931852 original size:12 final size:12
Alignment explanation
Indices: 931783--931956 Score: 83
Period size: 13 Copynumber: 13.9 Consensus size: 12
931773 AAAAATAATA
931783 AAAAATGAAAAG
1 AAAAATGAAAAG
* *
931795 AAGAAAAAGAAGAAA
1 -A-AAAATGAA-AAG
931810 AAAAATGGAAAAATG
1 AAAAAT-G-AAAA-G
**
931825 AAAAATG-ATGG
1 AAAAATGAAAAG
931836 AAAAAATGAAAAG
1 -AAAAATGAAAAG
*
931849 AAAAAAAGAAACAG
1 -AAAAATGAAA-AG
931863 AAAAATG----G
1 AAAAATGAAAAG
*
931871 -AAAATG-GAAG
1 AAAAATGAAAAG
931881 AAAAAATGAGAAAG
1 -AAAAATGA-AAAG
*
931895 AAAAAAGAAGAAG
1 AAAAATGAA-AAG
931908 AAAAATGAGAAAG
1 AAAAATGA-AAAG
* *
931921 AAAAAAGAAGAG
1 AAAAATGAAAAG
*
931933 AAAAAATGAAAAA
1 -AAAAATGAAAAG
931946 AAAAATGAAAA
1 AAAAATGAAAA
931957 AATAGAGAAA
Statistics
Matches: 125, Mismatches: 18, Indels: 37
0.69 0.10 0.21
Matches are distributed among these distances:
7 6 0.05
8 1 0.01
10 1 0.01
11 1 0.01
12 29 0.23
13 59 0.47
14 18 0.14
15 10 0.08
ACGTcount: A:0.73, C:0.01, G:0.20, T:0.07
Consensus pattern (12 bp):
AAAAATGAAAAG
Found at i:931911 original size:26 final size:27
Alignment explanation
Indices: 931877--931950 Score: 120
Period size: 26 Copynumber: 2.9 Consensus size: 27
931867 ATGGAAAATG
931877 GAAGAAAAAATGAGAAAGAAAAAAGAA
1 GAAGAAAAAATGAGAAAGAAAAAAGAA
931904 GAAG-AAAAATGAGAAAGAAAAAAGAA
1 GAAGAAAAAATGAGAAAGAAAAAAGAA
931930 G-AGAAAAAATGA-AAA-AAAAAA
1 GAAGAAAAAATGAGAAAGAAAAAA
931951 TGAAAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
24 6 0.13
25 5 0.11
26 31 0.67
27 4 0.09
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (27 bp):
GAAGAAAAAATGAGAAAGAAAAAAGAA
Found at i:931943 original size:20 final size:20
Alignment explanation
Indices: 931769--931973 Score: 61
Period size: 20 Copynumber: 9.6 Consensus size: 20
931759 AAAAAAGGGA
931769 GAAAAAAAATAAT-AAAAAAT
1 GAAAAAAAA-AATGAAAAAAT
*
931789 GAAAAGAAGAAAAAGAAGAAAA-
1 GAAAA-AA-AAAATGAA-AAAAT
*
931811 -AAAATGGAAAAATGAAAAATGAT
1 GAAAA--AAAAAATGAAAAA--AT
*
931834 GGAAAAAATGAAAA-GAAAAAAA
1 -GAAAAAA--AAAATGAAAAAAT
*
931856 GAAACAGAAAAATGGAAAATGGAA-
1 GAAA-AAAAAAAT-GAAAA---AAT
931880 GAAAAAATGAGAAA-GAAAAAA-
1 GAAAAAA--A-AAATGAAAAAAT
* *
931901 GAAGAAGAAAAATG-AGAAA-
1 GAA-AAAAAAAATGAAAAAAT
*
931920 GAAAAAAGAAGA-GAAAAAAT
1 GAAAAAA-AAAATGAAAAAAT
931940 GAAAAAAAAAATGAAAAAAT
1 GAAAAAAAAAATGAAAAAAT
931960 AGAGAAAAATAAAA
1 -GA-AAAAA-AAAA
931974 GGGGGGTTCA
Statistics
Matches: 142, Mismatches: 13, Indels: 57
0.67 0.06 0.27
Matches are distributed among these distances:
18 4 0.03
19 20 0.14
20 29 0.20
21 26 0.18
22 23 0.16
23 11 0.08
24 15 0.11
25 11 0.08
26 3 0.02
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (20 bp):
GAAAAAAAAAATGAAAAAAT
Found at i:931957 original size:12 final size:12
Alignment explanation
Indices: 931770--931958 Score: 81
Period size: 12 Copynumber: 15.3 Consensus size: 12
931760 AAAAAGGGAG
931770 AAAAAAAAT--A
1 AAAAAAAATGAA
*
931780 ATAAAAAATGAA
1 AAAAAAAATGAA
*
931792 AAGAAGAAAAAGAA
1 AA-AA-AAAATGAA
931806 GAAAAAAAATGGAA
1 -AAAAAAAAT-GAA
*
931820 AAATGAAAAATGAT
1 AAA--AAAAATGAA
**
931834 GGAAAAAATGAA
1 AAAAAAAATGAA
*
931846 AAGAAAAAAAGAA
1 AA-AAAAAATGAA
*
931859 ACAGAAAAATG--
1 A-AAAAAAATGAA
* *
931870 ---GAAAATGGA
1 AAAAAAAATGAA
*
931879 AGAAAAAATGAGA
1 AAAAAAAATGA-A
931892 AAGAAAAAA-GAA
1 AA-AAAAAATGAA
*
931904 GAAGAAAAATGAGA
1 -AAAAAAAATGA-A
931918 AAGAAAAAA-GAA
1 AA-AAAAAATGAA
*
931930 GAGAAAAAATGAA
1 -AAAAAAAATGAA
931943 AAAAAAAATGAA
1 AAAAAAAATGAA
931955 AAAA
1 AAAA
931959 TAGAGAAAAA
Statistics
Matches: 135, Mismatches: 21, Indels: 44
0.68 0.10 0.22
Matches are distributed among these distances:
7 6 0.04
10 8 0.06
12 44 0.33
13 41 0.30
14 28 0.21
15 8 0.06
ACGTcount: A:0.74, C:0.01, G:0.18, T:0.07
Consensus pattern (12 bp):
AAAAAAAATGAA
Found at i:933431 original size:55 final size:55
Alignment explanation
Indices: 933299--933653 Score: 391
Period size: 55 Copynumber: 6.5 Consensus size: 55
933289 TTTATGAAGA
* * * *
933299 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGA----
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * * * *
933350 TCGAGT-TCTATATTCTCTGAAGGAATAGAGAGCGGGCCCGTTT-TATGAAAATTGT
1 TCGAGTCT-TATACTCCCTGAACGAATAGGGAGCGGACACGTTTGT-TGAAGATTGT
* * *
933405 TCGAGT-TCTATACTCCCTAAACGAATAGGGAGCGGACCCATTTGTTGAAGATTGT
1 TCGAGTCT-TATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * * *
933460 TCGAGTCCTATACTCTCTTAAGGAATAGGGAGTGGACACGTTTGTTGAAGATTAT
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
**
933515 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAAACACGTTTGTTGAAGATTGT
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * *
933570 TCGAGTCTTATACTCCCTAAATGAATAGGGAGCAGACACGTTTGCTGAAGATTAT
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
933625 TCGAGTCTTATACTCCCTGAACGAATAGG
1 TCGAGTCTTATACTCCCTGAACGAATAGG
933654 AAGCAGACTC
Statistics
Matches: 258, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
50 1 0.00
51 41 0.16
55 215 0.83
56 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (55 bp):
TCGAGTCTTATACTCCCTGAACGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
Found at i:933518 original size:110 final size:110
Alignment explanation
Indices: 933299--933661 Score: 450
Period size: 110 Copynumber: 3.3 Consensus size: 110
933289 TTTATGAAGA
* * * *
933299 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGA----TCGAGTTCTA
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCCTA
* * * * * * *
933360 TATTCTCTGAAGGAATAGAGAGCGGGCCCGTTT-TATGAAAATTGT
66 TACTCTCTAAAGGAATAGGGAGCGGACACGTTTGT-TGAAGATTAT
* * * *
933405 TCGAGT-TCTATACTCCCTAAACGAATAGGGAGCGGACCCATTTGTTGAAGATTGTTCGAGTCCT
1 TCGAGTCT-TATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCCT
* *
933469 ATACTCTCTTAAGGAATAGGGAGTGGACACGTTTGTTGAAGATTAT
65 ATACTCTCTAAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTAT
* *
933515 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAAACACGTTTGTTGAAGATTGTTCGAGTCTTA
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCCTA
* * * *
933580 TACTCCCTAAATGAATAGGGAGCAGACACGTTTGCTGAAGATTAT
66 TACTCTCTAAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTAT
*
933625 TCGAGTCTTATACTCCCTGAACGAATAGGAAGCAGAC
1 TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAGAC
933662 TCTTCATTCG
Statistics
Matches: 220, Mismatches: 30, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
106 43 0.20
110 175 0.80
111 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (110 bp):
TCGAGTCTTATACTCCCTGAACGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCCTA
TACTCTCTAAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTAT
Found at i:933630 original size:165 final size:161
Alignment explanation
Indices: 933299--933661 Score: 435
Period size: 165 Copynumber: 2.2 Consensus size: 161
933289 TTTATGAAGA
*
933299 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGATCGAGTTCTATATT
1 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGATCGAGTTCTATACT
* * *** *
933364 CTCTGAAGGAATAGAGAGCGGGCCCGTTTTATGAAAATTGTTCGAGTTCTATACTCCCTAAACGA
66 CCCTGAACGAATAGAGAGCAAACACGTTTTATGAAAATTGTTCGAGTTCTATACTCCCTAAACGA
* * * *
933429 ATAGGGAGCGGACCCATTTGTTGAAGATTGT
131 ATAGGGAGCAGACACATTTGCTGAAGATTAT
* * **
933460 TCGAGTCCTATACTCTCTTAAGGAATAGGGAGTGGACACGTTTGTTGAAGATTATTCGAG-TCTT
1 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAG---A-TCGAGTTC-T
* *
933524 ATACTCCCTGAACGAATAGGGAGCAAACACGTTTGT-TGAAGATTGTTCGAG-TCTTATACTCCC
61 ATACTCCCTGAACGAATAGAGAGCAAACACGTTT-TATGAAAATTGTTCGAGTTC-TATACTCCC
* *
933587 TAAATGAATAGGGAGCAGACACGTTTGCTGAAGATTAT
124 TAAACGAATAGGGAGCAGACACATTTGCTGAAGATTAT
* * * *
933625 TCGAGTCTTATACTCCCTGAACGAATAGGAAGCAGAC
1 TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGAC
933662 TCTTCATTCG
Statistics
Matches: 169, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
161 46 0.27
164 5 0.03
165 117 0.69
166 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (161 bp):
TCGAGTCATATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGATCGAGTTCTATACT
CCCTGAACGAATAGAGAGCAAACACGTTTTATGAAAATTGTTCGAGTTCTATACTCCCTAAACGA
ATAGGGAGCAGACACATTTGCTGAAGATTAT
Found at i:944255 original size:21 final size:20
Alignment explanation
Indices: 944221--944259 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
944211 ATTAATTATT
944221 TAAAAAATTAAATAAAAATA
1 TAAAAAATTAAATAAAAATA
*
944241 TAAAAACATTTAATAAAAA
1 TAAAAA-ATTAAATAAAAA
944260 AATATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAAAAATTAAATAAAAATA
Found at i:956291 original size:38 final size:39
Alignment explanation
Indices: 956244--956324 Score: 128
Period size: 38 Copynumber: 2.1 Consensus size: 39
956234 ATCTCTAAAC
* *
956244 ATTTCAACATTCCAATTTAATATTTAACCTGTAACTC-T
1 ATTTCAACATTCCAATTTAATAATTAAACTGTAACTCTT
*
956282 ATTTCAACATTCCAATTTAATAATTAAACTGTAATTCTT
1 ATTTCAACATTCCAATTTAATAATTAAACTGTAACTCTT
956321 ATTT
1 ATTT
956325 TAAATTGATC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 34 0.87
39 5 0.13
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.44
Consensus pattern (39 bp):
ATTTCAACATTCCAATTTAATAATTAAACTGTAACTCTT
Found at i:962620 original size:21 final size:20
Alignment explanation
Indices: 962534--962691 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
962524 AAATGACCAA
**
962534 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
962553 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
962573 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
962593 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
962614 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
962635 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
962655 CCAGAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
962676 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
962692 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 40 0.39
21 46 0.45
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:962753 original size:20 final size:20
Alignment explanation
Indices: 962659--962887 Score: 239
Period size: 20 Copynumber: 11.4 Consensus size: 20
962649 GATTTTCCAG
* ** *
962659 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
962679 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
962699 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
962719 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
962739 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
962759 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
962779 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
962799 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * **
962819 AATCGCAACGAGAATCTATA
1 AATCGCAACGCGTATCCGTA
*
962839 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
962859 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
962879 AATCACAAC
1 AATCGCAAC
962888 ACTGAAATTT
Statistics
Matches: 177, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 173 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:966217 original size:72 final size:72
Alignment explanation
Indices: 966124--966433 Score: 326
Period size: 72 Copynumber: 4.4 Consensus size: 72
966114 GCAACGAGAG
*
966124 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCGCAACAATGAAAATCGCAATGC-GAAATGAAAATCGCAATGC
966188 GAAATGAA
65 GAAATGAA
* * *
966196 AATCGCAATGCGAAATGAAAATCGTAACGA-GAGAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCGCAACAATGAAAATCGCAATGC-GAAATGAAAATCGCAATGC
966260 GAAATGAA
65 GAAATGAA
* * * *
966268 AATCGCAAAGAGAGAATCG-CAAT-GCGTA-AATGAAAATCGCAATGCGAAATGAAAATCGCAA-
1 AATCGCAATGCGA-AAT-GAAAATCGC-AACAATGAAAATCGCAATGCGAAATGAAAATCGCAAT
*
966329 -CG--A-GAG
63 GCGAAATGAA
*
966335 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCA
1 AATCGCAATGC-GAAATGAAAATCGCAA--C--AATGAAAATCGCAATGCGAAATGAAAATCGCA
966395 ATGCGAAAATGAA
61 ATGCG-AAATGAA
966408 AATCGCAATGCGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
966434 TTGCGATTCT
Statistics
Matches: 202, Mismatches: 17, Indels: 38
0.79 0.07 0.15
Matches are distributed among these distances:
66 1 0.00
67 28 0.14
68 6 0.03
69 2 0.01
70 4 0.02
72 126 0.62
73 34 0.17
74 1 0.00
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (72 bp):
AATCGCAATGCGAAATGAAAATCGCAACAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCG
AAATGAA
Found at i:966245 original size:53 final size:53
Alignment explanation
Indices: 966110--966433 Score: 491
Period size: 53 Copynumber: 6.1 Consensus size: 53
966100 CGGAAATTAC
*
966110 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
*
966157 AATCGCAATGCGGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
*
966215 AATCGTAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
* *
966268 AATCGCAAAGAGAGAATCGCAATGCGTAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
966321 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
*
966374 AATCGCAACGAGAGAATCGCAATGCGAAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
966427 AATCGCA
1 AATCGCA
966434 TTGCGATTCT
Statistics
Matches: 255, Mismatches: 10, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
47 8 0.03
49 1 0.00
50 1 0.00
52 14 0.05
53 216 0.85
55 2 0.01
56 1 0.00
58 12 0.05
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (53 bp):
AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
Found at i:966473 original size:53 final size:52
Alignment explanation
Indices: 966410--966525 Score: 151
Period size: 53 Copynumber: 2.2 Consensus size: 52
966400 AAAATGAAAA
* *
966410 TCGCAATGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATT
** ** **
966462 TCCGCATTGCGATTTTCATTTCGCATTACGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATT
966515 TCGCATTGCGA
1 TCGCATTGCGA
966526 TTTTCATTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 11 0.20
53 44 0.80
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATT
Found at i:966553 original size:19 final size:19
Alignment explanation
Indices: 966448--966545 Score: 134
Period size: 19 Copynumber: 5.4 Consensus size: 19
966438 GATTCTCTCG
966448 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
966468 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
* *
966487 TTACGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
966501 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
966520 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
966539 TTGCGAT
1 TTGCGAT
966546 AGTCATTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
14 5 0.07
16 7 0.10
17 7 0.10
19 35 0.51
20 15 0.22
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:966671 original size:14 final size:14
Alignment explanation
Indices: 966652--966688 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
966642 CATCAATTAC
966652 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
966666 ACAAATCATCTTTT
1 ACAAATCAACTTTT
966680 ACAAATCAA
1 ACAAATCAA
966689 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:968555 original size:19 final size:19
Alignment explanation
Indices: 968529--968666 Score: 125
Period size: 19 Copynumber: 7.8 Consensus size: 19
968519 CACGAAACTT
968529 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
* * **
968548 AGAATCGCAACGAGAAACC
1 AAAATCGCAACGCGAAATG
968567 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
* *
968586 AAAATCACAA--CGACA-G
1 AAAATCGCAACGCGAAATG
*
968602 --AATCGCAATGCGAAATG
1 AAAATCGCAACGCGAAATG
968619 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
*
968633 AGAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
968652 AAAATCGCAATGCGA
1 AAAATCGCAACGCGA
968667 TTTTGGTTTC
Statistics
Matches: 94, Mismatches: 15, Indels: 20
0.73 0.12 0.16
Matches are distributed among these distances:
14 17 0.18
15 1 0.01
16 7 0.07
17 7 0.07
18 1 0.01
19 61 0.65
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:968658 original size:33 final size:33
Alignment explanation
Indices: 968531--968661 Score: 172
Period size: 33 Copynumber: 3.8 Consensus size: 33
968521 CGAAACTTAA
* *
968531 AATCGCAACGCGAAATGAGAATCGCAACGAGAAACCAA
1 AATCGCAACGCGAAATGAAAATCGCAACGAG-----AG
* *
968569 AATCGCAACGCGAAATGAAAATCACAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
*
968602 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
968635 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
968662 TGCGATTTTG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
33 57 0.67
38 28 0.33
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:968658 original size:52 final size:51
Alignment explanation
Indices: 968530--968666 Score: 134
Period size: 52 Copynumber: 2.6 Consensus size: 51
968520 ACGAAACTTA
* * * *
968530 AAATCGCAACGCGAAATGAGAATCGCAACGAGAAACCAAAATCGCAACGCG
1 AAATCGCAACGCGAAATGAAAATCGCAATGCGAAACCAAAATCGCAACGAG
* ** * **
968581 AAAT-GAAAATC-ACAACGACAGAATCGCAATGCGAAATGAAAATCGCAACGAG
1 AAATCGCAACGCGA-AATGA-A-AATCGCAATGCGAAACCAAAATCGCAACGAG
968633 AGAATCGCAACGCGAAATGAAAATCGCAATGCGA
1 A-AATCGCAACGCGAAATGAAAATCGCAATGCGA
968667 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
49 1 0.02
50 8 0.12
51 4 0.06
52 40 0.61
53 4 0.06
54 8 0.12
55 1 0.02
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (51 bp):
AAATCGCAACGCGAAATGAAAATCGCAATGCGAAACCAAAATCGCAACGAG
Done.