Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009598.1 Hibiscus syriacus cultivar Beakdansim tig00116978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 236377
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 2
Found at i:9148 original size:51 final size:53
Alignment explanation
Indices: 9068--9168 Score: 143
Period size: 51 Copynumber: 1.9 Consensus size: 53
9058 AATACTTCGC
* * *
9068 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTCG-GAAAA-AAAAAAGAACGT
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATCGAGAAAAGAAAAAAGAACGT
* *
9119 TTAGGGTGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAAGAAAAAAGAA
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATCGAGAAAAGAAAAAAGAA
9169 GGGAAAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 29 0.67
52 5 0.12
53 9 0.21
ACGTcount: A:0.46, C:0.15, G:0.27, T:0.13
Consensus pattern (53 bp):
TTAGGATGAAAACCCGAAAGGGCGCCCTAAATCGAGAAAAGAAAAAAGAACGT
Found at i:10101 original size:105 final size:105
Alignment explanation
Indices: 9915--10688 Score: 1289
Period size: 105 Copynumber: 7.4 Consensus size: 105
9905 AGGTTTTACC
9915 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
9980 ACGAAGGGACCACTGGTTGTCAATAAACATTTCTTAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
10020 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACGACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
10085 ACGAAGGGACCGCTGGTTGTCAACAAACGTTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
10125 CAGAGCCAATTTCAACTTCA-AACGAAGGATATTGGACTCCAGACGACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
10189 ACGAAGGGACCGCTGGTTGTCAACAAACGTTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
10229 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACGACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
10294 ACGAAGGGACCGCTGGTTGTCAACAAACGTTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
10334 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* **
10399 ACGAAGGGACCGCTGGTTGTCAACAACCATTTCTCAATCC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
10439 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
10504 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* ****
10544 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
** ** *
10609 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* *
10650 CAGAGCCAATTTCAACTTCACAATGAATGATATTGGACT
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
10689 TTGGAACAAT
Statistics
Matches: 636, Mismatches: 31, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
104 104 0.16
105 484 0.76
106 48 0.08
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:12460 original size:17 final size:18
Alignment explanation
Indices: 12438--12471 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
12428 TGTATTACTA
12438 TATTATTATTA-ATTTTC
1 TATTATTATTATATTTTC
12455 TATTATTATTATATTTT
1 TATTATTATTATATTTT
12472 TCCCTCTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATTATATTTTC
Found at i:13776 original size:5 final size:5
Alignment explanation
Indices: 13768--13797 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
13758 CGTTAAGATT
13768 TCAAG TCAAG CTCAAG TCAAG TCAAG TCAA
1 TCAAG TCAAG -TCAAG TCAAG TCAAG TCAA
13798 CACGAGTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (5 bp):
TCAAG
Found at i:13784 original size:11 final size:10
Alignment explanation
Indices: 13768--13797 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
13758 CGTTAAGATT
13768 TCAAGTCAAG
1 TCAAGTCAAG
13778 CTCAAGTCAAG
1 -TCAAGTCAAG
13789 TCAAGTCAA
1 TCAAGTCAA
13798 CACGAGTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (10 bp):
TCAAGTCAAG
Found at i:13787 original size:16 final size:15
Alignment explanation
Indices: 13768--13797 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
13758 CGTTAAGATT
13768 TCAAGTCAAGCTCAAG
1 TCAAGTCAAG-TCAAG
13784 TCAAGTCAAGTCAA
1 TCAAGTCAAGTCAA
13798 CACGAGTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (15 bp):
TCAAGTCAAGTCAAG
Found at i:18518 original size:29 final size:29
Alignment explanation
Indices: 18485--18634 Score: 223
Period size: 29 Copynumber: 5.2 Consensus size: 29
18475 TGATATTTTA
*
18485 GGAATTATTTTAAAAAATGTGACATTCTG
1 GGAATTATTTTGAAAAATGTGACATTCTG
*
18514 GGAATTATTTTGAAAAATGTGACATTTTG
1 GGAATTATTTTGAAAAATGTGACATTCTG
* *
18543 AGAATTATTTTGAAAAA-GTGACATTTTG
1 GGAATTATTTTGAAAAATGTGACATTCTG
*
18571 GGAATTATTTTGAAAAATGTGAAATTCTG
1 GGAATTATTTTGAAAAATGTGACATTCTG
*
18600 GGAATTATTTTGAAAAATATGACA-TCTTG
1 GGAATTATTTTGAAAAATGTGACATTC-TG
18629 GGAATT
1 GGAATT
18635 TTCGAATGTG
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
28 29 0.26
29 82 0.74
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (29 bp):
GGAATTATTTTGAAAAATGTGACATTCTG
Found at i:18580 original size:57 final size:58
Alignment explanation
Indices: 18486--18634 Score: 228
Period size: 57 Copynumber: 2.6 Consensus size: 58
18476 GATATTTTAG
* * * *
18486 GAATTATTTTAAAAAATGTGACATTCTGGGAATTATTTTGAAAAATGTGACATTTTGA
1 GAATTATTTTGAAAAATGTGACATTTTGGGAATTATTTTGAAAAATGTGAAATTCTGA
*
18544 GAATTATTTTGAAAAA-GTGACATTTTGGGAATTATTTTGAAAAATGTGAAATTCTGG
1 GAATTATTTTGAAAAATGTGACATTTTGGGAATTATTTTGAAAAATGTGAAATTCTGA
* *
18601 GAATTATTTTGAAAAATATGACATCTTGGGAATT
1 GAATTATTTTGAAAAATGTGACATTTTGGGAATT
18635 TTCGAATGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
57 53 0.64
58 30 0.36
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.39
Consensus pattern (58 bp):
GAATTATTTTGAAAAATGTGACATTTTGGGAATTATTTTGAAAAATGTGAAATTCTGA
Found at i:18624 original size:86 final size:86
Alignment explanation
Indices: 18474--18634 Score: 259
Period size: 86 Copynumber: 1.9 Consensus size: 86
18464 ACCCGACCCG
* * *
18474 GTGATATTTTAGGAATTATTTTAAAAAATGTGACATTCTGGGAATTATTTTGAAAAATGTGACAT
1 GTGACATTTTAGGAATTATTTTAAAAAATGTGAAATTCTGGGAATTATTTTGAAAAATATGACAT
*
18539 TTTGAGAATTATTTTGAAAAA
66 CTTGAGAATTATTTTGAAAAA
* *
18560 GTGACATTTTGGGAATTATTTTGAAAAATGTGAAATTCTGGGAATTATTTTGAAAAATATGACAT
1 GTGACATTTTAGGAATTATTTTAAAAAATGTGAAATTCTGGGAATTATTTTGAAAAATATGACAT
*
18625 CTTGGGAATT
66 CTTGAGAATT
18635 TTCGAATGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 68 1.00
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (86 bp):
GTGACATTTTAGGAATTATTTTAAAAAATGTGAAATTCTGGGAATTATTTTGAAAAATATGACAT
CTTGAGAATTATTTTGAAAAA
Found at i:25838 original size:17 final size:17
Alignment explanation
Indices: 25816--25848 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25806 GGTTCGGTCC
*
25816 GACCCGACCCGTTGACT
1 GACCCGACCCGATGACT
25833 GACCCGACCCGATGAC
1 GACCCGACCCGATGAC
25849 ATTTTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.42, G:0.24, T:0.12
Consensus pattern (17 bp):
GACCCGACCCGATGACT
Found at i:25929 original size:29 final size:28
Alignment explanation
Indices: 25845--25976 Score: 183
Period size: 29 Copynumber: 4.6 Consensus size: 28
25835 CCCGACCCGA
**
25845 TGACATTTTGAAAATTATTTTGAAAAAAGG
1 TGACATTTTGGGAATTATTTTG-AAAAA-G
*
25875 TGATATTTTGGGAATTATTTTGAAAAAG
1 TGACATTTTGGGAATTATTTTGAAAAAG
*
25903 TGACATTTTAGGAATTATTTTGAAAAAGG
1 TGACATTTTGGGAATTATTTTGAAAAA-G
*
25932 TGACATTATGGGAATTATTTTGAAAAAG
1 TGACATTTTGGGAATTATTTTGAAAAAG
25960 ATGACATTTTGGGAATT
1 -TGACATTTTGGGAATT
25977 TTCGAATGTG
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
28 27 0.29
29 46 0.50
30 19 0.21
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.39
Consensus pattern (28 bp):
TGACATTTTGGGAATTATTTTGAAAAAG
Found at i:25953 original size:57 final size:59
Alignment explanation
Indices: 25843--25976 Score: 202
Period size: 58 Copynumber: 2.3 Consensus size: 59
25833 GACCCGACCC
* * *
25843 GATGACATTTT-GAAAATTATTTTGAAAAAAGGTGATATTTTGGGAATTATTTTGAAAAA
1 GATGACATTTTAG-GAATTATTTTGAAAAAAGGTGACATTATGGGAATTATTTTGAAAAA
25902 G-TGACATTTTAGGAATTATTTTG-AAAAAGGTGACATTATGGGAATTATTTTGAAAAA
1 GATGACATTTTAGGAATTATTTTGAAAAAAGGTGACATTATGGGAATTATTTTGAAAAA
*
25959 GATGACATTTTGGGAATT
1 GATGACATTTTAGGAATT
25977 TTCGAATGTG
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
57 33 0.48
58 34 0.49
59 2 0.03
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (59 bp):
GATGACATTTTAGGAATTATTTTGAAAAAAGGTGACATTATGGGAATTATTTTGAAAAA
Found at i:28040 original size:12 final size:12
Alignment explanation
Indices: 28023--28062 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 12
28013 TTGAAATTGC
28023 TTAAAACATGCA
1 TTAAAACATGCA
28035 TTAAAACATGAGGCA
1 TTAAAACAT---GCA
28050 TTAAAACATGCA
1 TTAAAACATGCA
28062 T
1 T
28063 GGAGGTTGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 13 0.52
15 12 0.48
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.25
Consensus pattern (12 bp):
TTAAAACATGCA
Found at i:35702 original size:13 final size:13
Alignment explanation
Indices: 35686--35715 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
35676 TTTAATTGCG
35686 AAAATTAAAAATT
1 AAAATTAAAAATT
*
35699 AAAATTAAAATTT
1 AAAATTAAAAATT
35712 AAAA
1 AAAA
35716 CTCGATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTAAAAATT
Found at i:37134 original size:19 final size:19
Alignment explanation
Indices: 37110--37157 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
37100 TGCAAAAAGC
37110 ATAAATAATAATACGAAAA
1 ATAAATAATAATACGAAAA
*
37129 ATAAATGAT-A-A-GAAAA
1 ATAAATAATAATACGAAAA
37145 AT-AATAATAATAC
1 ATAAATAATAATAC
37158 CATATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
15 5 0.21
16 8 0.33
17 2 0.08
18 1 0.04
19 8 0.33
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (19 bp):
ATAAATAATAATACGAAAA
Found at i:37263 original size:37 final size:37
Alignment explanation
Indices: 37213--37517 Score: 283
Period size: 37 Copynumber: 8.5 Consensus size: 37
37203 AAATTTCCAA
* *
37213 ATTTTAAAAACTATATATTATACATATTTTCAAAAAC
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
** * *
37250 ATTTTAAAAACTATATAACATAAATGTTTTCAAAAAT
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
***
37287 ATTTTAAAAACTATATATTATATATATTTTCAATTTT
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
* *
37324 TTTTTAAAAA--A-ACTA-TATA-ATA---T-ATAAAT
1 ATTTTAAAAACTATA-TATTATATATATTTTCAAAAAT
* * **
37353 GTTTTCAAAACTATATATTATATAAGTTTTCAAA-AT
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
*
37389 GATTTTAAAAACTATATATTATATATATTTTCTAAAAT
1 -ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
* * *
37427 GTTTTAAAAACTATATACTATATA-GTTTTCAAAAAT
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
* * * *
37463 ATTTTAAAGACTATATATTATATACA-TTTCCAAAGT
1 ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
*
37499 GTTTTTAAAAACTATATAT
1 -ATTTTAAAAACTATATAT
37518 GTCGGAACCG
Statistics
Matches: 215, Mismatches: 39, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
29 10 0.05
30 1 0.00
31 3 0.01
32 5 0.02
33 4 0.02
34 5 0.02
35 3 0.01
36 42 0.20
37 140 0.65
38 2 0.01
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (37 bp):
ATTTTAAAAACTATATATTATATATATTTTCAAAAAT
Found at i:37367 original size:27 final size:25
Alignment explanation
Indices: 37332--37387 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 25
37322 TTTTTTTAAA
37332 AAAACTATATAATATATAAATGTTTTC
1 AAAACTATATAATATAT-AA-GTTTTC
*
37359 AAAACTATATATTATATAAGTTTTC
1 AAAACTATATAATATATAAGTTTTC
37384 AAAA
1 AAAA
37388 TGATTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 10 0.36
26 2 0.07
27 16 0.57
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (25 bp):
AAAACTATATAATATATAAGTTTTC
Found at i:37374 original size:25 final size:27
Alignment explanation
Indices: 37332--37387 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 27
37322 TTTTTTTAAA
37332 AAAACTATATAATATATA-AATGTTTTC
1 AAAACTATATAATATATATAA-GTTTTC
37359 AAAACTATAT-AT-TATATAAGTTTTC
1 AAAACTATATAATATATATAAGTTTTC
37384 AAAA
1 AAAA
37388 TGATTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.50
26 4 0.14
27 10 0.36
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (27 bp):
AAAACTATATAATATATATAAGTTTTC
Found at i:37399 original size:66 final size:64
Alignment explanation
Indices: 37283--37413 Score: 165
Period size: 66 Copynumber: 2.0 Consensus size: 64
37273 ATGTTTTCAA
** **
37283 AAATATTTTAAAAACTATATATTATATATATTTTCAATTTTTTTTTAAAAAAACTATATAATATA
1 AAATATTTTAAAAACTATATATTATATATATTTTCAAAATGATTTT--AAAAACTATATAATATA
37348 T
64 T
* * *
37349 AAATGTTTTCAAAACTATATATTATATA-AGTTTTCAAAATGATTTTAAAAACTATATATTATAT
1 AAATATTTTAAAAACTATATATTATATATA-TTTTCAAAATGATTTTAAAAACTATATAATATAT
37413 A
1 A
37414 TATTTTCTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 18 0.32
65 1 0.02
66 38 0.67
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (64 bp):
AAATATTTTAAAAACTATATATTATATATATTTTCAAAATGATTTTAAAAACTATATAATATAT
Found at i:37435 original size:103 final size:101
Alignment explanation
Indices: 37251--37450 Score: 271
Period size: 103 Copynumber: 2.0 Consensus size: 101
37241 TTCAAAAACA
37251 TTTTAAAAACTATATAACATAAATGTTTTCAAAAATATTTTAAAAACTATATATTATATATATTT
1 TTTTAAAAACTATATAACATAAATGTTTTCAAAAATATTTTAAAAACTATATATTATATATATTT
** *
37316 TCAATTTTTTTTTAAAAAAACTATATAATATATAAATG
66 TCAATAATGTTTT--AAAAACTATATAATATATAAATG
* **
37354 TTTTCAAAACTATATATTATATAA-GTTTTC-AAAATGATTTTAAAAACTATATATTATATATAT
1 TTTTAAAAACTATATAACATA-AATGTTTTCAAAAAT-ATTTTAAAAACTATATATTATATATAT
*
37417 TTTCTAA-AATGTTTTAAAAACTATATACTATATA
64 TTTC-AATAATGTTTTAAAAACTATATAATATATA
37451 GTTTTCAAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
101 18 0.21
102 5 0.06
103 60 0.69
104 4 0.05
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.45
Consensus pattern (101 bp):
TTTTAAAAACTATATAACATAAATGTTTTCAAAAATATTTTAAAAACTATATATTATATATATTT
TCAATAATGTTTTAAAAACTATATAATATATAAATG
Found at i:37958 original size:25 final size:22
Alignment explanation
Indices: 37901--37964 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 22
37891 ACAATAGAAT
37901 AATAA-AATAAAAAAAATCAAA
1 AATAATAATAAAAAAAATCAAA
*
37922 ATTGAATAAATAAAAAAAAGGGTCAAA
1 AAT-AAT-AATAAAAAAAA---TCAAA
37949 AATAATAATAAAAAAA
1 AATAATAATAAAAAAA
37965 TGATGTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
21 2 0.06
22 2 0.06
24 11 0.31
25 10 0.29
26 3 0.09
27 7 0.20
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.17
Consensus pattern (22 bp):
AATAATAATAAAAAAAATCAAA
Found at i:38359 original size:22 final size:22
Alignment explanation
Indices: 38329--38382 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
38319 CGGTGTAGCC
38329 CCGGCCGCCGCTCTCAGTCGCT
1 CCGGCCGCCGCTCTCAGTCGCT
*
38351 CTGGCCGCCGCTCTCAGTCGCT
1 CCGGCCGCCGCTCTCAGTCGCT
*
38373 CCGGCGGCCG
1 CCGGCCGCCG
38383 GGCCAACCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.04, C:0.48, G:0.31, T:0.17
Consensus pattern (22 bp):
CCGGCCGCCGCTCTCAGTCGCT
Found at i:39211 original size:10 final size:10
Alignment explanation
Indices: 39169--39217 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
39159 GACCCTGCAC
39169 AAAAATAAAT
1 AAAAATAAAT
*
39179 AGAAATAAAT
1 AAAAATAAAT
39189 AAATTAA-AAAT
1 AAA--AATAAAT
39200 AAAAATAAAT
1 AAAAATAAAT
*
39210 AATAATAA
1 AAAAATAA
39218 TAATATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 22 0.67
11 7 0.21
12 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:39222 original size:16 final size:17
Alignment explanation
Indices: 39169--39222 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
39159 GACCCTGCAC
*
39169 AAAAATAAA-TAGAAAT
1 AAAAATAAATTAAAAAT
39185 --AAATAAATTAAAAAT
1 AAAAATAAATTAAAAAT
*
39200 AAAAATAAA-TAATAAT
1 AAAAATAAATTAAAAAT
*
39216 AATAATA
1 AAAAATA
39223 TATATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 7 0.22
15 6 0.19
16 12 0.38
17 7 0.22
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAAATAAATTAAAAAT
Found at i:39266 original size:26 final size:27
Alignment explanation
Indices: 39220--39270 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
39210 AATAATAATA
39220 ATATATATATATAAACGTTTTCAAAAAC
1 ATATATATATATAAACGTTTT-AAAAAC
*
39248 ATATA-ATATATAAA-TTTTTAAAA
1 ATATATATATATAAACGTTTTAAAA
39271 TGTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 4 0.18
27 9 0.41
28 5 0.23
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (27 bp):
ATATATATATATAAACGTTTTAAAAAC
Found at i:39299 original size:41 final size:40
Alignment explanation
Indices: 39243--39319 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 40
39233 AACGTTTTCA
* *
39243 AAAACATATAATATATAAATTTTTAAAATGTTTTTTTTTT
1 AAAACATATAATATATAAATTTTCAAAATGGTTTTTTTTT
* *
39283 AAAACTATATATTATATATATTTTCAAAATGGTTTTT
1 AAAAC-ATATAATATATAAATTTTCAAAATGGTTTTT
39320 AAAAATTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (40 bp):
AAAACATATAATATATAAATTTTCAAAATGGTTTTTTTTT
Found at i:39344 original size:37 final size:37
Alignment explanation
Indices: 39278--39416 Score: 116
Period size: 37 Copynumber: 3.9 Consensus size: 37
39268 AAATGTTTTT
* * *
39278 TTTTTAAAACTATATATTAT-ATATATTTTCAAAATGG
1 TTTTTAAAAATATATATTATAAAATATTTTCAAAA-CG
* *
39315 TTTTTAAAAAT-TATATTATAAAATGTTTTCATAACG
1 TTTTTAAAAATATATATTATAAAATATTTTCAAAACG
* *
39351 TTTTCAAAAGTATATATTAT---ATA-TTT-AAAACG
1 TTTTTAAAAATATATATTATAAAATATTTTCAAAACG
* *
39383 TTTTCAAAAACTATATATTAT-ATA-ATTTTCAAAA
1 TTTTTAAAAA-TATATATTATAAAATATTTTCAAAA
39417 AATATTTTCA
Statistics
Matches: 85, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
32 14 0.16
33 13 0.15
34 3 0.04
35 4 0.05
36 22 0.26
37 29 0.34
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (37 bp):
TTTTTAAAAATATATATTATAAAATATTTTCAAAACG
Found at i:39441 original size:118 final size:117
Alignment explanation
Indices: 39300--39546 Score: 412
Period size: 120 Copynumber: 2.1 Consensus size: 117
39290 TATATTATAT
39300 ATATTTTCAAAATGGTTTTTAAAAAT-TATATTATA-AAATGTTTTCATAACGTTTTCAAAAGTA
1 ATATTTTCAAAATGGTTTTTAAAAATATATATTATATAAATGTTTTCATAACGTTTTCAAAAGTA
39363 TATATTATATA-TTT-AAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 TATATTATATATTTTAAAAACG-TTTCAAAAAC--TATA-TATATAATTTTC-AAAA
39418 ATATTTTCAAAATGGTTTTTAAAAATATATATTATATAAATGTTTTCATAACGTTTTCAAAAGTA
1 ATATTTTCAAAATGGTTTTTAAAAATATATATTATATAAATGTTTTCATAACGTTTTCAAAAGTA
39483 TATATTATATATTTTAAAAACGTTTCAAAAACTATATATATAATTTTCAAAA
66 TATATTATATATTTTAAAAACGTTTCAAAAACTATATATATAATTTTCAAAA
*
39535 ATATTTTAAAAA
1 ATATTTTCAAAA
39547 CTATATATAT
Statistics
Matches: 124, Mismatches: 1, Indels: 9
0.93 0.01 0.07
Matches are distributed among these distances:
117 15 0.12
118 38 0.31
119 13 0.10
120 39 0.31
121 13 0.10
122 6 0.05
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (117 bp):
ATATTTTCAAAATGGTTTTTAAAAATATATATTATATAAATGTTTTCATAACGTTTTCAAAAGTA
TATATTATATATTTTAAAAACGTTTCAAAAACTATATATATAATTTTCAAAA
Found at i:39463 original size:26 final size:24
Alignment explanation
Indices: 39368--39463 Score: 72
Period size: 26 Copynumber: 3.8 Consensus size: 24
39358 AAGTATATAT
*
39368 TATATATTTAAAACGTTTTCAAAAA
1 TATATATTTAAAATGTTTT-AAAAA
* *
39393 CTATATATTATATAAT-TTTCAAAAA
1 -TATATATT-TAAAATGTTTTAAAAA
39418 -ATAT-TTTCAAAATGGTTTTTAAAAA
1 TATATATTT-AAAAT-G-TTTTAAAAA
39443 TATATATTATATAAATGTTTT
1 TATATATT-TA-AAATGTTTT
39464 CATAACGTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
21 1 0.02
22 6 0.11
23 4 0.07
25 13 0.23
26 19 0.34
27 8 0.14
28 5 0.09
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (24 bp):
TATATATTTAAAATGTTTTAAAAA
Found at i:39519 original size:34 final size:35
Alignment explanation
Indices: 39445--39632 Score: 133
Period size: 35 Copynumber: 5.4 Consensus size: 35
39435 TTTAAAAATA
* * * *
39445 TATATTATATAAATGTTTTC-ATAACGTTTTCAAAAG
1 TATA-TATATATATATTTTCAAAAACG-TTTCAAAAC
39481 TATATAT-TATATATTTT-AAAAACGTTTCAAAA-
1 TATATATATATATATTTTCAAAAACGTTTCAAAAC
** *
39513 -ACTATATATATA-ATTTTCAAAAATATTTTAAAAAC
1 TA-TATATATATATATTTTCAAAAA-CGTTTCAAAAC
* * *
39548 TATATATATACATATTTTCAAAAATGTTT-TAAAC
1 TATATATATATATATTTTCAAAAACGTTTCAAAAC
* *
39582 TATATTATATATGTATTTTCAAAAACAATTTGC-AAAC
1 TATA-TATATATATATTTTCAAAAAC-GTTT-CAAAAC
*
39619 TGTATA-ATATATAT
1 TATATATATATATAT
39633 GTGTATATAT
Statistics
Matches: 124, Mismatches: 16, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
31 1 0.01
32 10 0.08
33 17 0.14
34 28 0.23
35 40 0.32
36 21 0.17
37 7 0.06
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (35 bp):
TATATATATATATATTTTCAAAAACGTTTCAAAAC
Found at i:39591 original size:37 final size:35
Alignment explanation
Indices: 39471--39606 Score: 131
Period size: 33 Copynumber: 3.9 Consensus size: 35
39461 TTTCATAACG
* * **
39471 TTTTCAAAAGTATATAT-TATATATTTT-AAAAACG
1 TTTTAAAAACTATATATATA-ATATTTTCAAAAATA
*
39505 TTTCAAAAACTATATATAT-A-ATTTTCAAAAATA
1 TTTTAAAAACTATATATATAATATTTTCAAAAATA
*
39538 TTTTAAAAACTATATATATACATATTTTCAAAAATG
1 TTTTAAAAACTATATATATA-ATATTTTCAAAAATA
*
39574 TTTT--AAACTATATTATATATGTATTTTCAAAAA
1 TTTTAAAAACTATA-TATATA-ATATTTTCAAAAA
39607 CAATTTGCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
32 5 0.06
33 24 0.28
34 22 0.25
35 20 0.23
36 16 0.18
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (35 bp):
TTTTAAAAACTATATATATAATATTTTCAAAAATA
Found at i:39619 original size:37 final size:35
Alignment explanation
Indices: 39515--39632 Score: 103
Period size: 37 Copynumber: 3.3 Consensus size: 35
39505 TTTCAAAAAC
*
39515 TATATATATAATTTTCAAAAATATTTTAAAAACTATA-
1 TATATATAT-ATTTTCAAAAA-AATTT-AAAACTATAT
* ** *
39552 TATATACATATTTTCAAAAATGTTTTAAACTATAT
1 TATATATATATTTTCAAAAAAATTTAAAACTATAT
* * *
39587 TATATATGTATTTTCAAAAACAATTTGCAAACTGTAT
1 TATATATATATTTTCAAAAA-AATTT-AAAACTATAT
*
39624 AATATATAT
1 TATATATAT
39633 GTGTATATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
34 8 0.12
35 21 0.32
36 14 0.21
37 23 0.35
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (35 bp):
TATATATATATTTTCAAAAAAATTTAAAACTATAT
Found at i:40415 original size:165 final size:165
Alignment explanation
Indices: 40222--41429 Score: 1794
Period size: 165 Copynumber: 7.4 Consensus size: 165
40212 AAGTTGAATA
** *
40222 TAATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40287 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
40352 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
40387 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40452 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
40517 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
40552 TAATCGAACTC-GGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC-AATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40615 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
40680 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
40715 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40780 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
*
40845 TTATGATGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
*
40880 TAATCGAACTCAGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40945 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
*
41010 TTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
41045 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * * *
41110 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG---CAGATAGCCCTTCTCGACTTAAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
* * * * * *
41171 CTATGCTGCAAATGGTGTG-CCTTGGAGCTGAGCG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
* *** * * * * * * * *
41205 TAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTT
1 TAATCGAACTCGGGGGTCTTTG---GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
* * * * * * * *
41270 ATGCCCTTGAAGCTGAGTGTAATCGAACT-TAAGGGTC-TTTGG---CAGATAGCCCTTCTCGAC
63 GTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA-GGTCTTTTGGTCACAGATAACCCTTCTAGCC
* * * * * * * *
41330 TTAAGCTATCCTGCAAATGATGTG-CTTTGGAGCTGAGCG
126 TTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
* ** * * * * *
41369 TAGTCGAACTCGAAGGTCTTGGTGGCAGGTAGCCCTTCTGGCCTTGAGCTAAGCTGCAAAT
1 TAATCGAACTCGGGGGTCTT--TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
41430 AGTTTGTTTA
Statistics
Matches: 988, Mismatches: 46, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
160 30 0.03
161 34 0.03
163 186 0.19
164 195 0.20
165 541 0.55
166 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (165 bp):
TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
Found at i:40739 original size:328 final size:329
Alignment explanation
Indices: 40222--41429 Score: 1801
Period size: 328 Copynumber: 3.7 Consensus size: 329
40212 AAGTTGAATA
* *
40222 TAATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCG-GGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40287 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
65 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
40352 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAG
130 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAG
40417 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
195 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
40482 GTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
260 GTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
40547 GAGTG
325 GAGTG
40552 TAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC-AATGATGTGC
1 TAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
40616 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGT
66 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGT
40681 TATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGC
131 TATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGC
40746 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
196 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
40811 TCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGATGTAAATGATGTGCCCTCGAAGCTG
261 TCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTG
40876 AGTG
326 AGTG
40880 TAATCGAACTCAGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTC-GGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
40945 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
65 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
*
41010 TTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAG
130 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAG
41075 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
195 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * * * * * * * *
41140 GTC-TTTGG---CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGGTGTG-CCTTGGAGCT
260 GTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
*
41200 GAGCG
325 GAGTG
* ** * * * * * * * *
41205 TAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTT
1 TAATCGAACTC-GGGGTCTTTG---GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
* * * * * * * *
41270 ATGCCCTTGAAGCTGAGTGTAATCGAACT-TAAGGGTC-TTTGG---CAGATAGCCCTTCTCGAC
62 GTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA-GGTCTTTTGGTCACAGATAACCCTTCTAGCC
* * * * * * * * * **
41330 TTAAGCTATCCTGCAAATGATGTG-CTTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTGGTGG
125 TTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTT--TGG
* * * * *
41394 CAGGTAGCCCTTCTGGCCTTGAGCTAAGCTGCAAAT
188 CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
41430 AGTTTGTTTA
Statistics
Matches: 818, Mismatches: 51, Indels: 22
0.92 0.06 0.02
Matches are distributed among these distances:
324 28 0.03
325 65 0.08
326 68 0.08
328 325 0.40
329 114 0.14
330 218 0.27
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (329 bp):
TAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGT
TATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGC
CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
TCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTG
AGTG
Found at i:41244 original size:493 final size:493
Alignment explanation
Indices: 40222--41298 Score: 1790
Period size: 493 Copynumber: 2.2 Consensus size: 493
40212 AAGTTGAATA
40222 TAATCGAACTCGAAGGTC-TT-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
1 TAATCGAACTCGAAGGTCTTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
40285 TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTG
66 TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTG
* *
40350 AGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGAT
131 AGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTCTTTGGCAGAT
40415 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
196 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
40480 AGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
261 AGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
40545 CTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAATG
326 CTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAATG
*
40610 ATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCC
391 ATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG--ACAGATAACCCTTCTAGAC
* * * *
40675 TTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
454 TTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
**
40715 TAATCGAACTCGGGGGTCTTTG--GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
1 TAATCGAACTCGAAGGTCTTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
40778 TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTG
66 TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTG
40843 AGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTCTTTGGCAGAT
131 AGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTCTTTGGCAGAT
40908 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
196 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
*
40973 AGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAG
261 AGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
41038 CTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAA
326 CTGAGTGTAATCGAACTC-GGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC-AA
* *
41103 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG-CAGATAGCCCTTCTCGAC
389 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGACAGATAACCCTTCTAGAC
* * *
41166 TTAAGCTATGCTGCAAATGGTGTG-CCTTGGAGCTGAGCG
454 TTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
* * * * * * * * * *
41205 TAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTT
1 TAATCGAACTCGAAGGTCTTTG-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
* * * *
41270 ATGCCCTTGAAGCTGAGTGTAATCGAACT
65 GTG-CCTTGGAGCTGAGCGTAGTCGAACT
41299 TAAGGGTCTT
Statistics
Matches: 545, Mismatches: 31, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
490 30 0.06
491 35 0.06
493 366 0.67
494 72 0.13
495 42 0.08
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (493 bp):
TAATCGAACTCGAAGGTCTTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTG
AGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTCTTTGGCAGAT
AGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
AGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
CTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAATG
ATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGACAGATAACCCTTCTAGACTT
AAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
Found at i:42964 original size:18 final size:17
Alignment explanation
Indices: 42933--42966 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
42923 AGAGTTTCTT
42933 AATTCAAATATGCAAAG
1 AATTCAAATATGCAAAG
*
42950 AATTGCAAATTTGCAAA
1 AATT-CAAATATGCAAA
42967 TATGATCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
AATTCAAATATGCAAAG
Found at i:43137 original size:91 final size:92
Alignment explanation
Indices: 42982--43166 Score: 354
Period size: 91 Copynumber: 2.0 Consensus size: 92
42972 TCCATTGCTT
42982 AACATCTTTTAAAGTAACATAAATTTGATTAAAATGTCTTTACAAAAACTTGAGAAAAAATGGAA
1 AACATCTTTTAAAGTAACATAAATTTGATTAAAATGTCTTTACAAAAACTTGAGAAAAAATGGAA
*
43047 G-AAAACCAGGTCAAACAGAATGCCTC
66 GAAAAACAAGGTCAAACAGAATGCCTC
43073 AACATCTTTTAAAGTAACATAAATTTGATTAAAATGTCTTTACAAAAACTTGAGAAAAAATGGAA
1 AACATCTTTTAAAGTAACATAAATTTGATTAAAATGTCTTTACAAAAACTTGAGAAAAAATGGAA
43138 GAAAAACAAGGTCAAACAGAATGCCTC
66 GAAAAACAAGGTCAAACAGAATGCCTC
43165 AA
1 AA
43167 ATGATGAAAT
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 66 0.72
92 26 0.28
ACGTcount: A:0.49, C:0.14, G:0.13, T:0.25
Consensus pattern (92 bp):
AACATCTTTTAAAGTAACATAAATTTGATTAAAATGTCTTTACAAAAACTTGAGAAAAAATGGAA
GAAAAACAAGGTCAAACAGAATGCCTC
Found at i:46304 original size:13 final size:13
Alignment explanation
Indices: 46286--46315 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
46276 GATTGCGAAG
46286 AATTAAAAATTTA
1 AATTAAAAATTTA
46299 AATT-AAAATTTA
1 AATTAAAAATTTA
46311 AATTA
1 AATTA
46316 CTCGATTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTAAAAATTTA
Found at i:46436 original size:23 final size:22
Alignment explanation
Indices: 46396--46443 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
46386 AATAATAATT
* * *
46396 AAACATTAAATAATAAATAACA
1 AAACAATAAATAAAAAATAAAA
46418 AAACAATAGAATAAAAAATAAAA
1 AAACAATA-AATAAAAAATAAAA
46441 AAA
1 AAA
46444 ATTGAAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (22 bp):
AAACAATAAATAAAAAATAAAA
Found at i:46884 original size:22 final size:22
Alignment explanation
Indices: 46854--46907 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
46844 CGGTGTAGCC
46854 CCGGCCGCCGCTCTCAGTCGCT
1 CCGGCCGCCGCTCTCAGTCGCT
*
46876 CTGGCCGCCGCTCTCAGTCGCT
1 CCGGCCGCCGCTCTCAGTCGCT
*
46898 CCGGCGGCCG
1 CCGGCCGCCG
46908 GCCAACCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.04, C:0.48, G:0.31, T:0.17
Consensus pattern (22 bp):
CCGGCCGCCGCTCTCAGTCGCT
Found at i:47803 original size:38 final size:36
Alignment explanation
Indices: 47743--47840 Score: 101
Period size: 35 Copynumber: 2.7 Consensus size: 36
47733 ATATATAAAC
* * *
47743 GTTTTCAAAAACATATAATATATAAT-TTTTAAAATG
1 GTTTTTAAAAAC-TATATTATATAATATTTCAAAATG
*
47779 TTTTTTTTTAAAAACTATATTATAT-ATATTTCAAAATG
1 ---GTTTTTAAAAACTATATTATATAATATTTCAAAATG
*
47817 GTTTTTAAAAATTATATTATATAA
1 GTTTTTAAAAACTATATTATATAA
47841 ATGTTTTCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
35 20 0.39
36 1 0.02
37 2 0.04
38 18 0.35
39 10 0.20
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (36 bp):
GTTTTTAAAAACTATATTATATAATATTTCAAAATG
Found at i:47894 original size:34 final size:34
Alignment explanation
Indices: 47784--48097 Score: 147
Period size: 34 Copynumber: 8.7 Consensus size: 34
47774 AAATGTTTTT
* * **
47784 TTTTAAAAACTATATTA-TATATATTTCAAAATGG
1 TTTTCAAAACTATA-TATTATATATTTTAAAAACG
* * * *
47818 TTTTTAAAAAT-TATATTATATAAATGTTTTCATAACG
1 TTTTCAAAACTATATATTATAT--A--TTTTAAAAACG
* *
47855 TTTTCAAAAGTATATATTATATATTTTTAAAACG
1 TTTTCAAAACTATATATTATATATTTTAAAAACG
**
47889 TTTTCAAAACTATATATTATATAATTTTCAAAAAATATA
1 TTTTCAAAACTATATATTATAT-ATTTT---AAAA-ACG
* * * *
47928 TTTTCAAAATGGTTTTTAAAAATTATATTATATATGTTTTCATAACG
1 TTTTCAAAA------CT----A-TATATTATATATTTTA--AAAACG
*
47975 TTTTCAAAAGTATATATTATATATTTTAAAAACG
1 TTTTCAAAACTATATATTATATATTTTAAAAACG
*
48009 TTTTCAAAAACTATATATTATA-ATTTTCAAAA--
1 TTTTC-AAAACTATATATTATATATTTTAAAAACG
* * * * *
48041 TATTTAAAAACTATATAATACATATTTCAAAAATG
1 T-TTTCAAAACTATATATTATATATTTTAAAAACG
48076 TTTT--AAACTATATATTATATAT
1 TTTTCAAAACTATATATTATATAT
48098 GTATTTTCAA
Statistics
Matches: 217, Mismatches: 34, Indels: 60
0.70 0.11 0.19
Matches are distributed among these distances:
32 33 0.15
33 18 0.08
34 61 0.28
35 22 0.10
36 15 0.07
37 16 0.07
38 13 0.06
39 10 0.05
41 1 0.00
45 1 0.00
47 10 0.05
48 2 0.01
49 5 0.02
50 10 0.05
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (34 bp):
TTTTCAAAACTATATATTATATATTTTAAAAACG
Found at i:47932 original size:15 final size:16
Alignment explanation
Indices: 47907--47936 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
47897 ACTATATATT
47907 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
47923 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
47937 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAATTTTCAAAAA
Found at i:48053 original size:32 final size:33
Alignment explanation
Indices: 47980--48094 Score: 105
Period size: 32 Copynumber: 3.5 Consensus size: 33
47970 TAACGTTTTC
* * *
47980 AAAAGTATATATTATATATTTTAAAAACGT-TTTCA
1 AAAACTATATATTATACATTTTCAAAA--TATTT-A
48015 AAAACTATATATTATA-ATTTTCAAAATATTTA
1 AAAACTATATATTATACATTTTCAAAATATTTA
*
48047 AAAACTATATA--ATACATATTTCAAAA-ATGTTT
1 AAAACTATATATTATACAT-TTTCAAAATAT-TTA
*
48079 TAAACTATATATTATA
1 AAAACTATATATTATA
48095 TATGTATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
30 3 0.04
31 4 0.06
32 33 0.47
33 3 0.04
34 12 0.17
35 15 0.21
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.42
Consensus pattern (33 bp):
AAAACTATATATTATACATTTTCAAAATATTTA
Found at i:48229 original size:2 final size:2
Alignment explanation
Indices: 48218--48252 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
48208 GTTTGCAAAC
*
48218 TA TA -A TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48253 AATAAAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:56390 original size:20 final size:19
Alignment explanation
Indices: 56365--56408 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
56355 CAATAACAAG
56365 GTTTTCATACCATAATTAAC
1 GTTTTC-TACCATAATTAAC
** *
56385 GTTTTCTTTCATAATTAAT
1 GTTTTCTACCATAATTAAC
56404 GTTTT
1 GTTTT
56409 TGCAGTATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (19 bp):
GTTTTCTACCATAATTAAC
Found at i:58911 original size:24 final size:24
Alignment explanation
Indices: 58866--58929 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 24
58856 AGGATTTATT
*
58866 TAAAATTAATTATTAA-TA-TTTTA
1 TAAAA-TAATAATTAATTATTTTTA
*
58889 -AAAATTATAATTTAATTATTTTTA
1 TAAAATAATAA-TTAATTATTTTTA
*
58913 TTAAATAATAATTAATT
1 TAAAATAATAATTAATT
58930 TAAACGATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.12
22 8 0.24
23 2 0.06
24 11 0.33
25 8 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TAAAATAATAATTAATTATTTTTA
Found at i:58961 original size:20 final size:20
Alignment explanation
Indices: 58936--58974 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
58926 AATTTAAACG
*
58936 ATTTAATTTATTAAAATTAA
1 ATTTAAATTATTAAAATTAA
*
58956 ATTTAAATTATTTAAATTA
1 ATTTAAATTATTAAAATTA
58975 GAATGACTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTAAATTATTAAAATTAA
Found at i:58968 original size:29 final size:28
Alignment explanation
Indices: 58865--58970 Score: 74
Period size: 29 Copynumber: 3.6 Consensus size: 28
58855 AAGGATTTAT
*
58865 TTAAAATTAATTA-TTAATATT-TTAAAAA
1 TTAAATTTAATTATTTAAT-TTATT-AAAA
* * *
58893 TTATAATTTAATTATTTTTATTAAATAATAA
1 TTA-AATTTAATTA-TTTAATTTATTAA-AA
**
58924 TT-AATTTAAACGATTTAATTTATTAAAA
1 TTAAATTT-AATTATTTAATTTATTAAAA
58952 TTAAATTTAAATTATTTAA
1 TTAAATTT-AATTATTTAA
58971 ATTAGAATGA
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
28 7 0.12
29 38 0.63
30 6 0.10
31 9 0.15
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
TTAAATTTAATTATTTAATTTATTAAAA
Found at i:59837 original size:19 final size:18
Alignment explanation
Indices: 59803--59847 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
59793 GAATAGCAAG
59803 TTAAAATTAAGCATCAAAA
1 TTAAAATTAAGCATC-AAA
*
59822 TTAAAATTAATG-ATCAAT
1 TTAAAATTAA-GCATCAAA
59840 TTAAAATT
1 TTAAAATT
59848 TACGTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 10 0.42
19 13 0.54
20 1 0.04
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (18 bp):
TTAAAATTAAGCATCAAA
Found at i:60795 original size:2 final size:2
Alignment explanation
Indices: 60788--60822 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
60778 AAGAAAACGA
60788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60823 TAGATTTAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:64489 original size:30 final size:30
Alignment explanation
Indices: 64455--64512 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
64445 CAGTTCAAAT
* * *
64455 CGGTTTTGCTGGTTTTTAGTCGGTTCATCC
1 CGGTTTTACCGGTTTTCAGTCGGTTCATCC
64485 CGGTTTTACCGGTTTTCAGTCGGTTCAT
1 CGGTTTTACCGGTTTTCAGTCGGTTCAT
64513 TGTCAGACCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.09, C:0.21, G:0.26, T:0.45
Consensus pattern (30 bp):
CGGTTTTACCGGTTTTCAGTCGGTTCATCC
Found at i:64904 original size:21 final size:21
Alignment explanation
Indices: 64854--64953 Score: 80
Period size: 21 Copynumber: 4.9 Consensus size: 21
64844 TCGCGTTGCA
64854 TTGAAAATCGCGTTGC--TAG
1 TTGAAAATCGCGTTGCGATAG
** **
64873 TTCCATTTCGCGTTGCGATAG
1 TTGAAAATCGCGTTGCGATAG
* *
64894 TTGAAAATCGCGTTGCGCT-T
1 TTGAAAATCGCGTTGCGATAG
** **
64914 TTCCATTTCGCGTTGCGATAG
1 TTGAAAATCGCGTTGCGATAG
*
64935 TTGAAAATAGCGTTGCGAT
1 TTGAAAATCGCGTTGCGAT
64954 TTTCCATTTC
Statistics
Matches: 57, Mismatches: 21, Indels: 4
0.70 0.26 0.05
Matches are distributed among these distances:
19 12 0.21
20 14 0.25
21 31 0.54
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (21 bp):
TTGAAAATCGCGTTGCGATAG
Found at i:64926 original size:20 final size:20
Alignment explanation
Indices: 64873--64973 Score: 76
Period size: 20 Copynumber: 5.0 Consensus size: 20
64863 GCGTTGCTAG
*
64873 TTCCATTTCGCGTTGCGATAG
1 TTCCATTTCGCGTTGCGAT-T
** ** *
64894 TTGAAAATCGCGTTGCGCTT
1 TTCCATTTCGCGTTGCGATT
*
64914 TTCCATTTCGCGTTGCGATAG
1 TTCCATTTCGCGTTGCGAT-T
** ** *
64935 TTGAAAATAGCGTTGCGATT
1 TTCCATTTCGCGTTGCGATT
64955 TTCCATTTCGCGTTGCGAT
1 TTCCATTTCGCGTTGCGAT
64974 AGTCTACAGT
Statistics
Matches: 56, Mismatches: 23, Indels: 3
0.68 0.28 0.04
Matches are distributed among these distances:
20 28 0.50
21 28 0.50
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (20 bp):
TTCCATTTCGCGTTGCGATT
Found at i:64929 original size:41 final size:41
Alignment explanation
Indices: 64854--64976 Score: 196
Period size: 41 Copynumber: 3.0 Consensus size: 41
64844 TCGCGTTGCA
*
64854 TTGAAAATCGCGTT--GCTAGTTCCATTTCGCGTTGCGATAG
1 TTGAAAATCGCGTTGCGCT-TTTCCATTTCGCGTTGCGATAG
64894 TTGAAAATCGCGTTGCGCTTTTCCATTTCGCGTTGCGATAG
1 TTGAAAATCGCGTTGCGCTTTTCCATTTCGCGTTGCGATAG
* *
64935 TTGAAAATAGCGTTGCGATTTTCCATTTCGCGTTGCGATAG
1 TTGAAAATCGCGTTGCGCTTTTCCATTTCGCGTTGCGATAG
64976 T
1 T
64977 CTACAGTTGT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
40 14 0.18
41 61 0.78
42 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (41 bp):
TTGAAAATCGCGTTGCGCTTTTCCATTTCGCGTTGCGATAG
Found at i:64993 original size:22 final size:22
Alignment explanation
Indices: 64965--65036 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
64955 TTCCATTTCG
64965 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
64987 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
65006 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
*
65028 CATTGCGAT
1 CGTTGCGAT
65037 TTTCCAAATT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 5 0.13
22 18 0.47
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:65010 original size:19 final size:19
Alignment explanation
Indices: 64986--65054 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
64976 TCTACAGTTG
64986 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
* * **
65005 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTCCAAAT
*
65026 GTCATTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTCCAAAT
65046 TCGTTGCGA
1 TCGTTGCGA
65055 AAATTCGTTG
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
19 18 0.49
20 5 0.14
21 5 0.14
22 9 0.24
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:65010 original size:41 final size:41
Alignment explanation
Indices: 64945--65054 Score: 177
Period size: 41 Copynumber: 2.7 Consensus size: 41
64935 TTGAAAATAG
*
64945 CGTTGCGATTTTCC-ATTTCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGTTGT
64987 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
*
65028 CATTGCGATTTTCCAAATTCGTTGCGA
1 CGTTGCGATTTTCCAAATTCGTTGCGA
65055 AAATTCGTTG
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
41 48 0.74
42 14 0.22
43 3 0.05
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
Found at i:65010 original size:82 final size:80
Alignment explanation
Indices: 64854--65017 Score: 197
Period size: 82 Copynumber: 2.0 Consensus size: 80
64844 TCGCGTTGCA
* * *
64854 TTGAAAATCGCGTTGCTAGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGCTTTTCCA
1 TTGAAAATAGCGTTGCGAGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCA
*
64919 TTTCGCGTTGCGATAG
66 ATTC-CGTTGCGATAG
* * * *
64935 TTGAAAATAGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTT
1 TTGAAAATAGCGTTGCGA-GTTCCATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTT
64999 CCAAATT-CGTTGCGATAG
63 CC-AATTCCGTTGCGATAG
65017 T
1 T
65018 CTACAGTTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
81 16 0.23
82 38 0.54
83 14 0.20
84 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (80 bp):
TTGAAAATAGCGTTGCGAGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCA
ATTCCGTTGCGATAG
Found at i:65777 original size:19 final size:19
Alignment explanation
Indices: 65753--65821 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
65743 CAACGAATTT
65753 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
* * **
65772 TCGCAACGACAACTGTAGACTA
1 TCGCAACG--AA-TTTGGAAAA
*
65794 TCTCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
65813 TCGCAACGA
1 TCGCAACGA
65822 CATCTGTAGA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
19 21 0.57
20 2 0.05
21 2 0.05
22 12 0.32
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (19 bp):
TCGCAACGAATTTGGAAAA
Found at i:65801 original size:41 final size:41
Alignment explanation
Indices: 65756--65835 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
65746 CGAATTTTCG
65756 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCT
1 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCT
*
65797 CAACGAATTTGGAAAATCGCAACGACATCTGTAGACTAT
1 CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTAT
65836 TGCAAAGCGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (41 bp):
CAACGAATTTGGAAAATCGCAACGACAACTGTAGACTATCT
Found at i:65873 original size:21 final size:21
Alignment explanation
Indices: 65847--65991 Score: 148
Period size: 21 Copynumber: 6.6 Consensus size: 21
65837 GCAAAGCGAA
65847 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
65868 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
*
65888 ACCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
65909 ATCGCAACGCGATTTTCAACTAT
1 ATCGCAACGCGATTTTCAAC--T
*
65932 CGAAAATCGCAACGCGGTTTTCAACT
1 -----ATCGCAACGCGATTTTCAACT
65958 ATCGCAACGCGATTTTTCAACT
1 ATCGCAACGCGA-TTTTCAACT
65980 ATCGCAACGCGA
1 ATCGCAACGCGA
65992 AATGCAACGC
Statistics
Matches: 101, Mismatches: 14, Indels: 17
0.77 0.11 0.13
Matches are distributed among these distances:
20 14 0.14
21 45 0.45
22 21 0.21
23 1 0.01
26 1 0.01
28 19 0.19
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:65880 original size:34 final size:35
Alignment explanation
Indices: 65831--65920 Score: 101
Period size: 41 Copynumber: 2.4 Consensus size: 35
65821 ACATCTGTAG
* *
65831 ACTATTGCAAAGCGAAAT-CGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATACGCAACGCGATTTTCA
65865 ACTATCGCAACGCGAAATGGAAAACCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAAT-----A-CGCAACGCGATTTTCA
65906 ACTATCGCAACGCGA
1 ACTATCGCAACGCGA
65921 TTTTCAACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
34 16 0.34
41 31 0.66
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.19
Consensus pattern (35 bp):
ACTATCGCAACGCGAAATACGCAACGCGATTTTCA
Found at i:65956 original size:49 final size:50
Alignment explanation
Indices: 65884--65983 Score: 175
Period size: 49 Copynumber: 2.0 Consensus size: 50
65874 ACGCGAAATG
65884 GAAAACCGCAACGCGATTTTCAACTATCGCAACGCGA-TTTTCAACTATC
1 GAAAACCGCAACGCGATTTTCAACTATCGCAACGCGATTTTTCAACTATC
* *
65933 GAAAATCGCAACGCGGTTTTCAACTATCGCAACGCGATTTTTCAACTATC
1 GAAAACCGCAACGCGATTTTCAACTATCGCAACGCGATTTTTCAACTATC
65983 G
1 G
65984 CAACGCGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 35 0.73
50 13 0.27
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
GAAAACCGCAACGCGATTTTCAACTATCGCAACGCGATTTTTCAACTATC
Found at i:67449 original size:37 final size:37
Alignment explanation
Indices: 67408--67513 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 37
67398 TTTAATATTC
* * *
67408 TAATACTATTATTATTTTGATAAGTAATTAATATAAT
1 TAATAATATTATTATTTTAATAAATAATTAATATAAT
67445 TAATAATATATTATTCTTATTTTAATAAATAATTAATATAAT
1 TAAT-A-ATATTA---TTATTTTAATAAATAATTAATATAAT
*
67487 TTATAATAGTT-TTATTTTAATCAAATA
1 TAATAATA-TTATTATTTTAAT-AAATA
67514 TACTAATTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
37 14 0.24
38 6 0.10
39 5 0.09
40 3 0.05
41 3 0.05
42 27 0.47
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (37 bp):
TAATAATATTATTATTTTAATAAATAATTAATATAAT
Found at i:67478 original size:42 final size:42
Alignment explanation
Indices: 67414--67494 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
67404 ATTCTAATAC
* *
67414 TATTATTATTTTGATAAGTAATTAATATAATTAATAATATAT
1 TATTATTATTTTAATAAATAATTAATATAATTAATAATATAT
* *
67456 TATTCTTATTTTAATAAATAATTAATATAATTTATAATA
1 TATTATTATTTTAATAAATAATTAATATAATTAATAATA
67495 GTTTTATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (42 bp):
TATTATTATTTTAATAAATAATTAATATAATTAATAATATAT
Found at i:67551 original size:2 final size:2
Alignment explanation
Indices: 67544--67573 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
67534 TTTATAAAAT
67544 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67574 TTTTATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:69044 original size:17 final size:15
Alignment explanation
Indices: 68995--69049 Score: 92
Period size: 15 Copynumber: 3.7 Consensus size: 15
68985 TAAATCATTT
*
68995 TCTCTTCCTCTTCAC
1 TCTCTTCCCCTTCAC
69010 TCTCTTCCCCTTCAC
1 TCTCTTCCCCTTCAC
*
69025 TCTCTTTCCCTTCAC
1 TCTCTTCCCCTTCAC
69040 TCTCTTCCCC
1 TCTCTTCCCC
69050 GTCGCTTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.05, C:0.51, G:0.00, T:0.44
Consensus pattern (15 bp):
TCTCTTCCCCTTCAC
Found at i:69949 original size:28 final size:28
Alignment explanation
Indices: 69895--69952 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
69885 AAACAGAACA
*
69895 AAAACAAGAGAGGGGGGAGAAGAAGATG
1 AAAACAAGAGAGGGGGAAGAAGAAGATG
* *
69923 AAAACAAGAG-GGAGGGAAGAGGGAGATG
1 AAAACAAGAGAGG-GGGAAGAAGAAGATG
69951 AA
1 AA
69953 CATGTGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.50, C:0.03, G:0.43, T:0.03
Consensus pattern (28 bp):
AAAACAAGAGAGGGGGAAGAAGAAGATG
Found at i:73959 original size:13 final size:13
Alignment explanation
Indices: 73941--73985 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
73931 ATGATAAATA
*
73941 AAAAAATTACAAT
1 AAAAAACTACAAT
* *
73954 AAAAAAGTCCAAT
1 AAAAAACTACAAT
*
73967 AAACAACTACAAT
1 AAAAAACTACAAT
73980 AAAAAA
1 AAAAAA
73986 GTACTAAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.69, C:0.13, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAAAACTACAAT
Found at i:80777 original size:3 final size:3
Alignment explanation
Indices: 80771--80822 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
80761 TTTATTTTTT
**
80771 TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA TAA TTT TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
80817 TAA TAA
1 TAA TAA
80823 ATTTAAAATG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:84426 original size:37 final size:36
Alignment explanation
Indices: 84385--84521 Score: 143
Period size: 39 Copynumber: 3.7 Consensus size: 36
84375 CGAAAATAAG
* *
84385 TATATATTATATAGTTTTTGAAAACGTTTTTAAAATC
1 TATATATTATATAGTTTTT-AAAACATTTTTAAAATA
* * * *
84422 TATATAGTATATGGTTTTGAAAA-ATATTTTGAAAACATT
1 TATATATTATATAGTTTTTAAAACAT-TTTT--AAA-ATA
* *
84461 TATATATTATATAGTTTTTAAAACATTTTGAAAGTA
1 TATATATTATATAGTTTTTAAAACATTTTTAAAATA
84497 TATATA-TATATAGTTTTTAAAACAT
1 TATATATTATATAGTTTTTAAAACAT
84522 ATATTATATA
Statistics
Matches: 84, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
35 20 0.24
36 15 0.18
37 19 0.23
38 3 0.04
39 25 0.30
40 2 0.02
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.47
Consensus pattern (36 bp):
TATATATTATATAGTTTTTAAAACATTTTTAAAATA
Found at i:84483 original size:27 final size:27
Alignment explanation
Indices: 84448--84614 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 27
84438 TTGAAAAATA
*
84448 TTTTGAAAACATTTATATATTATATAG
1 TTTTTAAAACATTTATATATTATATAG
84475 TTTTTAAAACATTTTGAAAGTATATATATATATAG
1 TTTTTAAAACA--TT-----TATATAT-TATATAG
* * *
84510 TTTTTAAAACATATAT-TA-TATAAACA
1 TTTTTAAAACATTTATATATTATATA-G
84536 TTTTTGAAAACA-TT-TATATTATATAG
1 TTTTT-AAAACATTTATATATTATATAG
84562 TTTTTAAAACATTTGAAAGTATATATATATAG
1 TTTTTAAAACATTT---A-TATAT-TATATAG
* *
84594 TTTTAAAAACATATATTATAT
1 TTTTTAAAACATTTA-TATAT
84615 AAAACATTTT
Statistics
Matches: 111, Mismatches: 10, Indels: 36
0.71 0.06 0.23
Matches are distributed among these distances:
25 12 0.11
26 15 0.14
27 23 0.21
28 3 0.03
29 8 0.07
31 5 0.05
32 19 0.17
33 1 0.01
34 7 0.06
35 18 0.16
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (27 bp):
TTTTTAAAACATTTATATATTATATAG
Found at i:84514 original size:35 final size:36
Alignment explanation
Indices: 84364--84521 Score: 147
Period size: 37 Copynumber: 4.2 Consensus size: 36
84354 AATTTTCGGA
*
84364 AAAACAATTTTCGAAAATAAGTATATATTATATAGTTTTT
1 AAAAC-ATTTT-GAAAAT-A-TATATAGTATATAGTTTTT
* * * * *
84404 GAAAACGTTTTTAAAATCTATATAGTATATGGTTTTGA
1 -AAAACATTTTGAAAATATATATAGTATATAGTTTT-T
* * *
84442 AAAATATTTTGAAAACATTTATATATTATATAGTTTTT
1 AAAACATTTTG-AAA-ATATATATAGTATATAGTTTTT
*
84480 AAAACATTTTGAAAGTATATATA-TATATAGTTTTT
1 AAAACATTTTGAAAATATATATAGTATATAGTTTTT
84515 AAAACAT
1 AAAACAT
84522 ATATTATATA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
35 19 0.19
36 7 0.07
37 27 0.28
38 13 0.13
39 23 0.23
40 4 0.04
41 5 0.05
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (36 bp):
AAAACATTTTGAAAATATATATAGTATATAGTTTTT
Found at i:84567 original size:87 final size:88
Alignment explanation
Indices: 84448--84672 Score: 316
Period size: 87 Copynumber: 2.5 Consensus size: 88
84438 TTGAAAAATA
84448 TTTTGAAAACATTTATATATTATATAGTTTTTAAAACATTTTGAAAGTATATATATATATAGTTT
1 TTTTGAAAACA-TTATATATTATATAGTTTTTAAAACATTTTGAAAG--TATATATATATAGTTT
*
84513 TTAAAACATATATTATAT-AAACA-T
63 TAAAAACATATATTATATAAAACATT
84537 TTTTGAAAACATT-TATATTATATAGTTTTTAAAACA-TTTGAAAGTATATATATATAGTTTTAA
1 TTTTGAAAACATTATATATTATATAGTTTTTAAAACATTTTGAAAGTATATATATATAGTTTTAA
84600 AAACATATATTATATAAAACATTT
66 AAACATATATTATATAAAACA-TT
*
84624 TTTTGAAAAC-TTATATATAATATATAATTTTCTAAAAACATTTTTGAAA
1 TTTTGAAAACATTATATAT--TATATAGTTTT-T-AAAACA-TTTTGAAA
84673 ACTATATAAT
Statistics
Matches: 124, Mismatches: 2, Indels: 16
0.87 0.01 0.11
Matches are distributed among these distances:
84 33 0.27
85 5 0.04
86 10 0.08
87 39 0.31
88 2 0.02
89 21 0.17
90 1 0.01
91 6 0.05
93 7 0.06
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.45
Consensus pattern (88 bp):
TTTTGAAAACATTATATATTATATAGTTTTTAAAACATTTTGAAAGTATATATATATAGTTTTAA
AAACATATATTATATAAAACATT
Found at i:84654 original size:27 final size:28
Alignment explanation
Indices: 84495--84694 Score: 103
Period size: 29 Copynumber: 7.0 Consensus size: 28
84485 ATTTTGAAAG
*
84495 TATATAT-ATATATAGTTTTTAAAACAT
1 TATATATAATATATAGTTTTGAAAACAT
*
84522 ATATTATATAA-ACAT--TTTTGAAAACAT
1 -TA-TATATAATATATAGTTTTGAAAACAT
*
84549 T-TATAT--TATATAGTTTTTAAAACATT
1 TATATATAATATATAGTTTTGAAAACA-T
* *
84575 TGAAAGTATATATATATAGTTTTAAAAACAT
1 T-ATA-TATA-ATATATAGTTTTGAAAACAT
* * **
84606 ATATTATATAAAACATTTTTTTGAAAAC-T
1 -TA-TATATAATATATAGTTTTGAAAACAT
* *
84635 TATATATAATATATAATTTTCTAAAAACAT
1 TATATATAATATAT-AGTTT-TGAAAACAT
* * *
84665 T-TTTGAAAACTATATAATTTTGAAAACAT
1 TATAT-ATAA-TATATAGTTTTGAAAACAT
84694 T
1 T
84695 TTTTAAAAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 37
0.70 0.11 0.19
Matches are distributed among these distances:
23 3 0.02
24 5 0.04
25 10 0.08
26 3 0.02
27 21 0.16
28 9 0.07
29 29 0.22
30 23 0.17
31 11 0.08
32 19 0.14
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (28 bp):
TATATATAATATATAGTTTTGAAAACAT
Found at i:84682 original size:31 final size:29
Alignment explanation
Indices: 84644--84702 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
84634 TTATATATAA
84644 TATATAATTTTCTAAAAACATTTTTGAAAAC
1 TATATAA-TTT-TAAAAACATTTTTGAAAAC
* *
84675 TATATAATTTTGAAAACATTTTTTAAAA
1 TATATAATTTTAAAAACATTTTTGAAAA
84703 AAGTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 16 0.62
30 3 0.12
31 7 0.27
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (29 bp):
TATATAATTTTAAAAACATTTTTGAAAAC
Found at i:84710 original size:31 final size:30
Alignment explanation
Indices: 84644--84713 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
84634 TTATATATAA
*
84644 TATATAATTTTCTAAAAACATTTTTGAAAAC
1 TATATAA-TTTCTAAAAACATTTTTAAAAAC
* *
84675 TATATAATTT-TGAAAACATTTTTTAAAAAAG
1 TATATAATTTCTAAAAACA-TTTTT-AAAAAC
84706 TATATAAT
1 TATATAAT
84714 ATATAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.21
30 8 0.24
31 19 0.56
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (30 bp):
TATATAATTTCTAAAAACATTTTTAAAAAC
Found at i:85234 original size:16 final size:17
Alignment explanation
Indices: 85215--85248 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
85205 AAAAAACATC
*
85215 ATCA-AAGCCAAACACG
1 ATCACAAGCAAAACACG
85231 ATCACAAGCAAAACACG
1 ATCACAAGCAAAACACG
85248 A
1 A
85249 ATCATCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.53, C:0.29, G:0.12, T:0.06
Consensus pattern (17 bp):
ATCACAAGCAAAACACG
Found at i:86079 original size:13 final size:13
Alignment explanation
Indices: 86063--86106 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
86053 TTTATTCATT
86063 TTATTTTCTTTTA
1 TTATTTTCTTTTA
*
86076 TTATTTTCTTGTA
1 TTATTTTCTTTTA
86089 TTATTTT-TGTTTA
1 TTATTTTCT-TTTA
86102 TTATT
1 TTATT
86107 ATTATTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 1 0.04
13 27 0.96
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (13 bp):
TTATTTTCTTTTA
Found at i:86116 original size:26 final size:26
Alignment explanation
Indices: 86062--86123 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 26
86052 ATTTATTCAT
*
86062 TTTATTTTCTTTTATTATTTTCTTGTA
1 TTTATTTT-TTTTATTATTTTATTGTA
86089 -TTATTTTTGTTTATTATTATTATT-TA
1 TTTATTTTT-TTTATTATT-TTATTGTA
86115 TTTATTTTT
1 TTTATTTTT
86124 ACTAACCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 1 0.03
26 18 0.58
27 12 0.39
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (26 bp):
TTTATTTTTTTTATTATTTTATTGTA
Found at i:86227 original size:12 final size:12
Alignment explanation
Indices: 86192--86220 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
86182 TCTAACATTT
86192 GTTGACATTTCA
1 GTTGACATTTCA
86204 GTTGACATTTCA
1 GTTGACATTTCA
86216 GTTGA
1 GTTGA
86221 ACTTTCAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (12 bp):
GTTGACATTTCA
Found at i:88352 original size:21 final size:21
Alignment explanation
Indices: 88327--88372 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
88317 TTAAAAATAT
*
88327 TAAATATTAAAATTAAATTTA
1 TAAATAATAAAATTAAATTTA
*
88348 TAAATAATAATATTAAATTTA
1 TAAATAATAAAATTAAATTTA
88369 -AAAT
1 TAAAT
88373 TCCAAAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAATAATAAAATTAAATTTA
Found at i:90108 original size:185 final size:185
Alignment explanation
Indices: 89724--90108 Score: 628
Period size: 185 Copynumber: 2.1 Consensus size: 185
89714 AATAAAACTG
* * *
89724 TAAATATATTATATATAACATATGAGCTTAGCCCAAACTATTTAAAACTCAATTAATAATTTAAG
1 TAAATATATTATATATAACATATGAGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAG
89789 ATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTTTATTTT
66 ATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTTTATTTT
* *
89854 ATAATTATATATTATTTAAATTAATTGTAAATTGTTTTTCTGAATTAAAAAATAT
131 ATAATTATATATTATTTAAATTAATTATAAACTGTTTTTCTGAATTAAAAAATAT
* *
89909 TAAATATATTATATATAACATATGGGCTCAGCTCAAACCATTTAAAACCCAATTAATAATTTAAG
1 TAAATATATTATATATAACATATGAGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAG
* *
89974 ATCTAGTAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTTTTATTT
66 ATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAA-TTATATAAAATTTTTATTT
* * *
90039 TATAATTATATATTATTTAAATTAATTATAAACTGTTTTTTTTAATTATAAAATAT
130 TATAATTATATATTATTTAAATTAATTATAAACTGTTTTTCTGAATTAAAAAATAT
* *
90095 TTAAT-TTTTATATA
1 TAAATATATTATATA
90109 AATTAGAAAA
Statistics
Matches: 185, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
185 111 0.60
186 74 0.40
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (185 bp):
TAAATATATTATATATAACATATGAGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAG
ATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTTTATTTT
ATAATTATATATTATTTAAATTAATTATAAACTGTTTTTCTGAATTAAAAAATAT
Found at i:90109 original size:40 final size:41
Alignment explanation
Indices: 90016--90110 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 41
90006 ATTAATTAAA
* * *
90016 AAATTTATATAAAATTTTTATTTTATAATTATATATTATTT
1 AAATTTATATAAAATGTTTATTTTATAATTATAAAATATTT
* *
90057 AAATTAATTATAAACTGTTT-TTTT-TAATTATAAAATATTT
1 AAATTTA-TATAAAATGTTTATTTTATAATTATAAAATATTT
*
90097 AATTTTTATATAAA
1 AA-ATTTATATAAA
90111 TTAGAAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
40 22 0.49
41 13 0.29
42 10 0.22
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (41 bp):
AAATTTATATAAAATGTTTATTTTATAATTATAAAATATTT
Found at i:91625 original size:7 final size:7
Alignment explanation
Indices: 91613--91638 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91603 AACCACAATT
91613 CCTAACC
1 CCTAACC
91620 CCTAACC
1 CCTAACC
91627 CCTAACC
1 CCTAACC
91634 CCTAA
1 CCTAA
91639 TATTAAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (7 bp):
CCTAACC
Found at i:91761 original size:21 final size:21
Alignment explanation
Indices: 91704--91766 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
91694 CATAAAATGA
*
91704 AAACTCTAAAATCACAAA-TTCT
1 AAACTC-AAAATCACAAACCT-T
*
91726 AAACTCAAAAACACAAACCTT
1 AAACTCAAAATCACAAACCTT
91747 AAATCTC-AAATCAC-AACCTT
1 AAA-CTCAAAATCACAAACCTT
91767 CATCGAGAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.17
21 20 0.56
22 10 0.28
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (21 bp):
AAACTCAAAATCACAAACCTT
Found at i:99777 original size:12 final size:12
Alignment explanation
Indices: 99762--99787 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99752 AATTATATAT
99762 ATTATTAATTTA
1 ATTATTAATTTA
99774 ATTATTAATTTA
1 ATTATTAATTTA
99786 AT
1 AT
99788 CATAATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATTAATTTA
Found at i:102297 original size:2 final size:2
Alignment explanation
Indices: 102284--102337 Score: 85
Period size: 2 Copynumber: 28.0 Consensus size: 2
102274 TTTTAAGAAA
*
102284 AT AT AT -T A- AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102324 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
102338 TTAAATAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102702 original size:3 final size:3
Alignment explanation
Indices: 102694--102746 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
102684 TTATATGACT
*
102694 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
102742 ATA AT
1 ATA AT
102747 TAAATATATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:104277 original size:13 final size:14
Alignment explanation
Indices: 104249--104280 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
104239 AATAGGCATG
104249 TAATATTTATTTAA
1 TAATATTTATTTAA
104263 TAATATTTA-TTAA
1 TAATATTTATTTAA
104276 TAATA
1 TAATA
104281 ATAAAAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATTTATTTAA
Found at i:104279 original size:3 final size:3
Alignment explanation
Indices: 104273--104312 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
104263 TAATATTTAT
*
104273 TAA TAA TAA TAA AAA TAGA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
104313 ACAAAATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:104666 original size:122 final size:122
Alignment explanation
Indices: 104509--104745 Score: 298
Period size: 122 Copynumber: 1.9 Consensus size: 122
104499 GATGACAATT
* * * * * * *
104509 TATCTCCTTCTGTGATATAATCTAGCAAAAAGTTGAATAA-ATTCTTCTCGTTATGGATTTCTTC
1 TATCTCCTTCTGTGATAGAATCAAGCAAAAAGTTGAACAAGATT-TTCTCATTATGAACTTATTC
* * *
104573 TTCTTCTTCAAATGAGTTATTCTCATTATGAACACT-TCTGGAAATGTTGATGATGATC
65 TTCCTCTTCAAATAAGTTATTCTCATTATGAAC-CTCTCTGGAAAAGTTGATGATGATC
* * *
104631 TATCTCCTTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGCTTTTCTCATTATGAACTTATTCT
1 TATCTCCTTCTGTGATAGAATCAAGCAAAAAGTTGAACAAGATTTTCTCATTATGAACTTATTCT
* * *
104696 TCCTCTTCAGATAAGTTCTTCTCATTATGAACTTCTCTGGAAAAGTTGAT
66 TCCTCTTCAAATAAGTTATTCTCATTATGAACCTCTCTGGAAAAGTTGAT
104746 CCATCGAGTA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
121 1 0.01
122 94 0.97
123 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (122 bp):
TATCTCCTTCTGTGATAGAATCAAGCAAAAAGTTGAACAAGATTTTCTCATTATGAACTTATTCT
TCCTCTTCAAATAAGTTATTCTCATTATGAACCTCTCTGGAAAAGTTGATGATGATC
Found at i:105092 original size:45 final size:45
Alignment explanation
Indices: 105022--105413 Score: 644
Period size: 45 Copynumber: 8.7 Consensus size: 45
105012 GGCTTTAAAA
* * *
105022 AAAACATCATGGACTGTAGGTCTTACAGATGACCCGAAGGTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
105067 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
105112 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
*
105157 AAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGATTTT-
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTG
*
105202 -AAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
* * *
105246 AAAACATCATGCACTGAAGGGCTTACATATGACTCAAAGGTTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTG
105292 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
* *
105337 AAAACATCATGCACTGAAGGGCATACAGATGACCCGAAGGTTTTTA
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTG
*
105383 AAAACATCATGCACTGAAGGTCTTACAGATG
1 AAAACATCATGCACTGAAGGGCTTACAGATG
105414 TGGGAAATAG
Statistics
Matches: 327, Mismatches: 15, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
43 4 0.01
44 39 0.12
45 205 0.63
46 79 0.24
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (45 bp):
AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTG
Found at i:105342 original size:91 final size:91
Alignment explanation
Indices: 105022--105413 Score: 655
Period size: 91 Copynumber: 4.3 Consensus size: 91
105012 GGCTTTAAAA
* * *
105022 AAAACATCATGGACTGTAGGTCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
105087 GCTTACAGATGACCCGAAGG-TTTTG
66 GCTTACAGATGACCCGAAGGTTTTTG
*
105112 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCCTGCACTGAAGG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
*
105177 GCTTACAGATGACCCGAAGGATTTT-
66 GCTTACAGATGACCCGAAGGTTTTTG
*
105202 -AAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
* * *
105266 GCTTACATATGACTCAAAGGTTTTTG
66 GCTTACAGATGACCCGAAGGTTTTTG
105292 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
1 AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
* *
105357 GCATACAGATGACCCGAAGGTTTTTA
66 GCTTACAGATGACCCGAAGGTTTTTG
*
105383 AAAACATCATGCACTGAAGGTCTTACAGATG
1 AAAACATCATGCACTGAAGGGCTTACAGATG
105414 TGGGAAATAG
Statistics
Matches: 282, Mismatches: 17, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
89 83 0.29
90 81 0.29
91 118 0.42
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (91 bp):
AAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGG
GCTTACAGATGACCCGAAGGTTTTTG
Found at i:106122 original size:22 final size:22
Alignment explanation
Indices: 106070--106146 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
106060 AATAAAGATT
* *
106070 TCATCTTTAAAAAGAGAATCTA
1 TCATATTTGAAAAGAGAATCTA
*
106092 TCATCTTTGAAAAGAGAATCTA
1 TCATATTTGAAAAGAGAATCTA
* * *
106114 TCATATTTGAAGAGTGTATCTA
1 TCATATTTGAAAAGAGAATCTA
106136 TCATATTTGAA
1 TCATATTTGAA
106147 GATTGTATCT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (22 bp):
TCATATTTGAAAAGAGAATCTA
Found at i:106147 original size:22 final size:22
Alignment explanation
Indices: 106087--106175 Score: 115
Period size: 22 Copynumber: 4.0 Consensus size: 22
106077 TAAAAAGAGA
* * * *
106087 ATCTATCATCTTTGAAAAGAGA
1 ATCTATCATATTTGAAGAGTGT
106109 ATCTATCATATTTGAAGAGTGT
1 ATCTATCATATTTGAAGAGTGT
*
106131 ATCTATCATATTTGAAGATTGT
1 ATCTATCATATTTGAAGAGTGT
* *
106153 ATCTATCATCTTTGAAGAATGT
1 ATCTATCATATTTGAAGAGTGT
106175 A
1 A
106176 CATGTAGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (22 bp):
ATCTATCATATTTGAAGAGTGT
Found at i:110679 original size:18 final size:17
Alignment explanation
Indices: 110656--110706 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
110646 TTTGATTCAA
110656 TTTTTTCATTTTTTCCTT
1 TTTTTTCATTTTTTCC-T
* *
110674 TTTTTTCCTTGTTTCCT
1 TTTTTTCATTTTTTCCT
110691 TTTTTTCTATTTTTTC
1 TTTTTTC-ATTTTTTC
110707 TTCTTCAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTTTCATTTTTTCCT
Found at i:116667 original size:23 final size:25
Alignment explanation
Indices: 116614--116668 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
116604 AAATATATTA
*
116614 AAAAATAAACATATAGAATTAAAAT
1 AAAACTAAACATATAGAATTAAAAT
*
116639 ATAACTAAACAT-T-GAA-TAAAATT
1 AAAACTAAACATATAGAATTAAAA-T
116662 AAAACTA
1 AAAACTA
116669 TATATTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 5 0.19
23 10 0.38
24 1 0.04
25 10 0.38
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAACTAAACATATAGAATTAAAAT
Found at i:118220 original size:13 final size:14
Alignment explanation
Indices: 118192--118223 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
118182 AATAGGCCTG
118192 TAATATTTATTTAA
1 TAATATTTATTTAA
118206 TAATATTTA-TTAA
1 TAATATTTATTTAA
118219 TAATA
1 TAATA
118224 ATAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATTTATTTAA
Found at i:118222 original size:3 final size:3
Alignment explanation
Indices: 118216--118263 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
118206 TAATATTTAT
* *
118216 TAA TAA TAA TAA -AA AAA TAGA TAC TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
118261 TAA
1 TAA
118264 ACAAAATGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:119338 original size:16 final size:17
Alignment explanation
Indices: 119307--119344 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 17
119297 CATTATTAAA
119307 ATTTAATATTTATTTTTT
1 ATTTAATA-TTATTTTTT
119325 ATTTAATA-TATTTTTT
1 ATTTAATATTATTTTTT
119341 ATTT
1 ATTT
119345 TATGACTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
18 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTAATATTATTTTTT
Found at i:119572 original size:16 final size:17
Alignment explanation
Indices: 119533--119574 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
119523 ATGTATTTGG
*
119533 AATAAT-TTATAACATT
1 AATAATATTATAACATA
119549 AATAATATTATAA-ATA
1 AATAATATTATAACATA
*
119565 AATCATATTA
1 AATAATATTA
119575 AATTAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
AATAATATTATAACATA
Found at i:120703 original size:3 final size:3
Alignment explanation
Indices: 120695--120736 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
120685 CACTTGGCTT
*
120695 TTC TTC TTCC TTC -TC CTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
120737 CTGTTGCTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:121942 original size:3 final size:3
Alignment explanation
Indices: 121934--122035 Score: 204
Period size: 3 Copynumber: 34.0 Consensus size: 3
121924 ACTGAATTTA
121934 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
121982 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
122030 TAT TAT
1 TAT TAT
122036 GTTATAAGCA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 99 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:122439 original size:29 final size:29
Alignment explanation
Indices: 122385--122459 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
122375 TTCTAATATT
*
122385 TATTTGTTATTATGAGTCCAACTTTTTCAG
1 TATTT-TTATTATGAGGCCAACTTTTTCAG
* *
122415 TATTTTTATTA-GAGGCTCAATTTTTTTAG
1 TATTTTTATTATGAGGC-CAACTTTTTCAG
122444 T-TTTTGATATTATGAG
1 TATTTT--TATTATGAG
122460 CATACTCTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 8 0.21
29 17 0.45
30 10 0.26
31 3 0.08
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.53
Consensus pattern (29 bp):
TATTTTTATTATGAGGCCAACTTTTTCAG
Found at i:123319 original size:20 final size:20
Alignment explanation
Indices: 123296--123425 Score: 111
Period size: 20 Copynumber: 6.5 Consensus size: 20
123286 TCTGTAAATA
*
123296 GCAACACAGAATT-CAAATTC
1 GCAACAC-GATTTCCAAATTC
* *
123316 GCAACGCGATTTCCAAATTT
1 GCAACACGATTTCCAAATTC
**
123336 GCAATGCGATTTCCAAATTC
1 GCAACACGATTTCCAAATTC
** *
123356 GCAACGTGATTTACAAATTC
1 GCAACACGATTTCCAAATTC
123376 GCAACACTGAATTT-CAAATTC
1 GCAACAC-G-ATTTCCAAATTC
* * * *
123397 GTAACTCGATTTTCGAATTC
1 GCAACACGATTTCCAAATTC
123417 GCAACACGA
1 GCAACACGA
123426 ATTTTAATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
19 8 0.09
20 66 0.73
21 13 0.14
22 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.28
Consensus pattern (20 bp):
GCAACACGATTTCCAAATTC
Found at i:123353 original size:40 final size:40
Alignment explanation
Indices: 123229--123406 Score: 123
Period size: 40 Copynumber: 4.4 Consensus size: 40
123219 AAATGACCAA
* *
123229 CAAATTCGCAACGCGAACTCCAATTTTGCAACTTA-G-TTTC
1 CAAATTCGCAACGCGATCTCCAAATTTGCAA--TACGATTTC
** * * *
123269 CAAATTCGCAACGCGAATCTGTAAA-TAGCAACACAGAATT-
1 CAAATTCGCAACGCG-ATCTCCAAATTTGCAATAC-GATTTC
* *
123309 CAAATTCGCAACGCGATTTCCAAATTTGCAATGCGATTTC
1 CAAATTCGCAACGCGATCTCCAAATTTGCAATACGATTTC
* * * * *
123349 CAAATTCGCAACGTGATTTACAAATTCGCAACACTGAATTT-
1 CAAATTCGCAACGCGATCTCCAAATTTGCAATAC-G-ATTTC
* *
123390 CAAATTCGTAACTCGAT
1 CAAATTCGCAACGCGAT
123407 TTTCGAATTC
Statistics
Matches: 108, Mismatches: 22, Indels: 15
0.74 0.15 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.09
40 71 0.66
41 22 0.20
42 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (40 bp):
CAAATTCGCAACGCGATCTCCAAATTTGCAATACGATTTC
Found at i:123380 original size:80 final size:81
Alignment explanation
Indices: 123229--123408 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 81
123219 AAATGACCAA
** * * **
123229 CAAATTCGCAACGCGAACTCCAATTTTGCAACTTAGTTTCCAAATTCGCAACGCGAATCTGTAAA
1 CAAATTCGCAACGCGATTTCCAAATTTGCAACTGAGTTTCCAAATTCGCAACGCGAATCTACAAA
123294 TAGCAACACAGAA-TT
66 TAGCAACACAGAATTT
* * *
123309 CAAATTCGCAACGCGATTTCCAAATTTGCAA-TGCGATTTCCAAATTCGCAACGTG-ATTTACAA
1 CAAATTCGCAACGCGATTTCCAAATTTGCAACTGAG-TTTCCAAATTCGCAACGCGAATCTACAA
* *
123372 ATTCGCAACACTGAATTT
65 A-TAGCAACACAGAATTT
* *
123390 CAAATTCGTAACTCGATTT
1 CAAATTCGCAACGCGATTT
123409 TCGAATTCGC
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 8 0.10
80 57 0.68
81 19 0.23
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (81 bp):
CAAATTCGCAACGCGATTTCCAAATTTGCAACTGAGTTTCCAAATTCGCAACGCGAATCTACAAA
TAGCAACACAGAATTT
Found at i:123408 original size:41 final size:40
Alignment explanation
Indices: 123296--123429 Score: 139
Period size: 40 Copynumber: 3.3 Consensus size: 40
123286 TCTGTAAATA
* * *
123296 GCAACACAGAA-TTCAAATTCGCAACGCGATTTCCAAATTT
1 GCAACAC-GAATTTCAAATTCGCAACTCGATTTACAAATTC
**
123336 GCAATGCG-ATTTCCAAATTCGCAACGT-GATTTACAAATTC
1 GCAACACGAATTT-CAAATTCGCAAC-TCGATTTACAAATTC
* * *
123376 GCAACACTGAATTTCAAATTCGTAACTCGATTTTCGAATTC
1 GCAACAC-GAATTTCAAATTCGCAACTCGATTTACAAATTC
123417 GCAACACGAATTT
1 GCAACACGAATTT
123430 TAATTTAGCA
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 40 0.51
41 30 0.38
42 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.29
Consensus pattern (40 bp):
GCAACACGAATTTCAAATTCGCAACTCGATTTACAAATTC
Found at i:126735 original size:18 final size:18
Alignment explanation
Indices: 126712--126752 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
126702 AAGCAAAAGG
126712 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
126730 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
*
126748 CAATC
1 AAATC
126753 GGCTTTACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:127180 original size:25 final size:25
Alignment explanation
Indices: 127142--127191 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
127132 AAATCAATTA
* *
127142 AACATTGTTGTGGGTATATTATTTG
1 AACATTGTTATGGGTACATTATTTG
*
127167 AACATTGTTATGGGTGCATTATTTG
1 AACATTGTTATGGGTACATTATTTG
127192 GAAATTTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:127606 original size:18 final size:18
Alignment explanation
Indices: 127585--127621 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
127575 GTAATTGAAG
127585 TTTGAATTTCAATTTCAA
1 TTTGAATTTCAATTTCAA
* *
127603 TTTGAGTTTGAATTTCAA
1 TTTGAATTTCAATTTCAA
127621 T
1 T
127622 ATAAATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTCAATTTCAA
Found at i:127628 original size:24 final size:24
Alignment explanation
Indices: 127583--127629 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
127573 ATGTAATTGA
* *
127583 AGTTTGAATTTCAATTTCAATTTG
1 AGTTTGAATTTCAATATAAATTTG
127607 AGTTTGAATTTCAATATAAATTT
1 AGTTTGAATTTCAATATAAATTT
127630 CGGCTCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (24 bp):
AGTTTGAATTTCAATATAAATTTG
Found at i:128743 original size:13 final size:13
Alignment explanation
Indices: 128727--128761 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
128717 TCAAATTTGA
128727 AACGCGAAATCGC
1 AACGCGAAATCGC
*
128740 AACGTGAAAATCGC
1 AACGCG-AAATCGC
128754 AACGCGAA
1 AACGCGAA
128762 TTTGACTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.43, C:0.26, G:0.23, T:0.09
Consensus pattern (13 bp):
AACGCGAAATCGC
Found at i:128774 original size:20 final size:20
Alignment explanation
Indices: 128749--128793 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
128739 CAACGTGAAA
*
128749 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAATTTGACT
128769 ATCGCAACACGAATTTGACT
1 ATCGCAACACGAATTTGACT
*
128789 TTCGC
1 ATCGC
128794 GTTGCGAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (20 bp):
ATCGCAACACGAATTTGACT
Found at i:128962 original size:64 final size:64
Alignment explanation
Indices: 128860--129010 Score: 241
Period size: 64 Copynumber: 2.4 Consensus size: 64
128850 AATTTAAAAC
* *
128860 AACAAATCAACTTTTACAAATCAATTAAACAAGTAAAAAATAAGAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATGATTTACACATCAATTA
** * *
128924 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTATGATTTCCTCATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATGATTTACACATCAATTA
128988 AACAAATCAAC-TTTACAAATCAA
1 AACAAATCAACTTTTACAAATCAA
129011 CTTTTATAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
63 12 0.15
64 69 0.85
ACGTcount: A:0.53, C:0.17, G:0.03, T:0.28
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATGATTTACACATCAATTA
Found at i:129021 original size:14 final size:13
Alignment explanation
Indices: 128989--129014 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
128979 CATCAATTAA
128989 ACAAATCAACTTT
1 ACAAATCAACTTT
129002 ACAAATCAACTTT
1 ACAAATCAACTTT
129015 TATAAATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ACAAATCAACTTT
Found at i:130387 original size:21 final size:21
Alignment explanation
Indices: 130363--130456 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
130353 GTGATTCGGA
* *
130363 CTCTCGAACGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGGGC
* **
130384 CTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGGC
*
130405 CTCTTGAACGGTAGGAGGGGC
1 CTCTTGAACGGTGGGAGGGGC
**
130426 CTCTTGAA-GGATGATAGGGGC
1 CTCTTGAACGG-TGGGAGGGGC
130447 CTCTTGAACG
1 CTCTTGAACG
130457 ATGACAGGTG
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
20 2 0.03
21 56 0.95
22 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.20
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGC
Found at i:130429 original size:42 final size:42
Alignment explanation
Indices: 130363--130456 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
130353 GTGATTCGGA
* *
130363 CTCTCGAACGGTGGGAGGGACCTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
* * *
130405 CTCTTGAACGGTAGGAGGGGCCTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
130447 CTCTTGAACG
1 CTCTTGAACG
130457 ATGACAGGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.20
Consensus pattern (42 bp):
CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
Done.