genome.fa.s9599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009599.1 Hibiscus syriacus cultivar Beakdansim tig00116979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125934

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6491--6521	15	2.1	15	100	0	62	25	6	12	54	1.62
8901--8961	26	2.3	26	97	0	113	50	3	0	45	1.17
8897--8968	26	2.5	30	78	21	100	48	2	0	48	1.16
16128--16178	2	25.5	2	100	0	102	49	0	0	50	1.00
17433--17782	59	6.0	59	84	8	421	35	12	21	30	1.91
17433--17782	176	2.0	175	81	9	419	35	12	21	30	1.91
18130--18518	68	5.8	68	90	0	602	30	14	24	31	1.94
18538--18822	79	3.6	79	85	0	372	37	9	21	31	1.86
18804--18921	45	2.6	46	80	1	130	49	6	19	24	1.72
22818--23109	59	4.9	59	82	9	328	33	14	21	31	1.93
23459--23848	68	5.8	68	91	0	629	30	14	23	30	1.95
23868--24164	79	3.8	79	90	2	436	40	10	20	28	1.86
24133--24249	45	2.6	46	75	11	116	47	7	19	24	1.75
26336--29656	62	54.0	62	77	9	2599	46	4	18	30	1.69
29591--29699	55	2.0	55	81	3	130	44	4	20	31	1.72
30309--30604	147	2.0	148	91	4	483	35	20	16	27	1.95
31472--31566	46	2.0	48	95	4	176	22	32	17	27	1.96
31930--31964	18	1.9	18	88	11	54	22	17	5	54	1.64
32441--32602	63	2.6	62	82	4	184	27	21	19	32	1.97
35709--35753	23	2.0	23	90	0	72	24	26	26	22	2.00
36427--36482	2	28.0	2	100	0	112	50	0	0	50	1.00
36813--36846	18	1.9	18	88	5	52	23	17	5	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37334--37492	64	2.5	63	85	9	198	27	20	18	33	1.96
40187--40211	5	5.0	5	100	0	50	60	20	20	0	1.37
42233--42277	2	22.5	2	100	0	90	48	0	0	51	1.00
43119--43194	30	2.5	31	89	6	120	51	17	11	19	1.76
45391--45447	29	2.0	29	100	0	114	47	10	7	35	1.65
45675--45717	22	2.0	22	86	9	61	46	4	4	44	1.45
47047--47500	181	2.5	182	90	2	700	28	15	12	43	1.83
47372--47718	109	3.1	112	90	2	576	26	14	14	44	1.84
50617--50651	18	1.9	18	94	0	61	65	0	0	34	0.93
50611--50654	17	2.6	17	79	10	54	68	0	0	31	0.90
58630--58660	16	1.9	16	93	0	53	19	12	19	48	1.81
60437--60479	22	1.9	23	85	4	61	27	2	4	65	1.25
64344--64384	20	2.0	21	85	4	57	68	0	0	31	0.90
66052--66101	21	2.4	22	80	16	61	62	4	4	30	1.32
108543--108587	22	2.0	23	86	4	65	77	2	11	8	1.07
110757--110800	12	3.8	12	90	3	63	11	9	47	31	1.71
110755--110800	24	2.0	24	91	4	76	10	10	47	30	1.73
110819--110867	21	2.3	21	89	0	71	44	0	0	55	0.99
110910--110953	13	3.5	13	87	3	63	13	13	52	20	1.74
113113--113207	31	3.1	31	76	3	102	34	20	17	27	1.95
113359--113447	2	44.5	2	100	0	178	49	0	0	50	1.00
113936--114084	64	2.3	65	85	6	196	28	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117372--117466	31	3.1	31	78	3	102	34	20	17	27	1.95
118117--118264	63	2.3	65	83	8	187	28	17	20	33	1.96
120047--120108	25	2.5	26	82	15	85	41	8	1	48	1.42
120047--120118	25	2.9	26	82	11	73	43	9	1	45	1.45

Tables:   1

The End!