genome.fa.s960.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000960.1 Hibiscus syriacus cultivar Beakdansim tig00001919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71263

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3120--3199	41	2.0	41	90	5	126	46	8	25	20	1.79
3700--3731	16	2.0	16	100	0	64	37	0	25	37	1.56
6153--6206	18	3.0	18	88	0	72	25	7	35	31	1.84
6163--6215	18	2.9	18	91	0	79	26	9	32	32	1.88
8060--8215	31	5.0	31	92	1	242	37	23	18	19	1.94
12582--12675	31	3.0	31	87	3	127	39	23	17	20	1.92
13240--13311	36	2.0	36	91	5	119	19	30	31	18	1.95
14607--14684	41	1.9	41	86	0	111	47	11	24	16	1.80
23438--23465	2	14.0	2	100	0	56	50	0	0	50	1.00
23971--24072	20	4.7	20	74	17	69	23	23	8	44	1.81
23972--24098	68	1.9	66	88	3	191	22	22	8	45	1.80
24060--24136	26	3.0	26	98	0	145	22	18	7	51	1.71
35608--35648	15	2.7	15	92	3	64	14	24	31	29	1.95
38064--38128	19	3.7	19	84	15	95	46	18	21	13	1.84
38147--38202	20	2.8	20	86	5	78	14	19	23	42	1.88
38751--38842	20	4.6	20	90	0	139	27	19	27	26	1.99
38750--38884	20	6.7	20	83	5	128	24	18	25	31	1.98
38893--38945	21	2.5	22	81	6	74	33	18	26	20	1.96
38980--39025	19	2.3	20	81	7	58	26	17	28	28	1.98
39257--39295	15	2.4	17	87	8	55	12	30	23	33	1.92
41765--41810	19	2.4	19	100	0	92	47	17	19	15	1.82
41856--41923	20	3.4	20	89	0	100	14	16	26	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41848--41923	40	1.9	40	83	5	100	14	17	23	44	1.85
42476--42561	20	4.3	20	92	0	136	26	19	29	24	1.99
42471--42605	20	6.7	20	83	5	128	25	18	25	30	1.98
42614--42666	21	2.5	22	81	6	74	33	18	26	20	1.96
42978--43016	15	2.4	17	87	8	55	12	30	23	33	1.92
45274--45312	14	2.8	14	84	0	51	35	0	17	46	1.49
45452--45497	19	2.4	19	92	0	74	52	17	15	15	1.76
45464--45504	19	2.2	19	90	0	64	53	14	19	12	1.72
45535--45610	20	3.8	20	94	0	125	14	21	23	40	1.90
45530--45626	40	2.7	34	75	17	95	13	22	24	39	1.90
46163--46250	20	4.4	20	88	2	124	27	18	28	26	1.98
46163--46251	40	2.2	40	89	0	142	26	17	28	26	1.98
46158--46292	20	6.7	20	80	5	119	24	18	25	31	1.98
46304--46353	21	2.4	22	80	6	68	36	18	26	20	1.95
46665--46703	15	2.4	16	83	8	53	12	30	25	30	1.93
46949--46973	9	2.8	9	100	0	50	92	0	0	8	0.40
49003--49041	14	2.8	14	84	0	51	35	0	17	46	1.49
49181--49226	19	2.4	19	100	0	92	47	17	19	15	1.82
49264--49339	20	3.8	20	91	0	116	14	19	23	42	1.88
49252--49355	40	2.9	34	73	15	91	13	22	24	40	1.89
49887--50021	20	6.7	20	83	5	128	24	17	26	31	1.97
50033--50082	21	2.4	22	80	6	68	36	18	26	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394--50432	15	2.4	16	83	8	53	12	30	25	30	1.93
55230--55263	2	17.0	2	100	0	68	50	0	0	50	1.00
57198--57311	24	5.3	23	64	23	68	23	40	9	26	1.85
57213--57285	18	3.7	18	72	19	65	24	41	9	24	1.85
57182--57309	42	3.0	41	89	4	184	24	40	10	24	1.87
57513--57646	45	3.0	45	78	0	169	31	27	19	21	1.97
59684--59748	31	2.1	31	97	0	121	49	21	3	26	1.64

Tables:   1

The End!