genome.fa.s9601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009601.1 Hibiscus syriacus cultivar Beakdansim tig00116981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125616

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580--625	19	2.4	19	88	3	74	54	8	17	19	1.68
4680--4723	19	2.4	19	92	3	72	31	2	9	56	1.43
4815--5992	192	6.1	196	92	5	1956	38	14	15	31	1.88
7202--7299	6	16.3	6	76	8	56	38	7	32	21	1.81
7230--7303	3	24.7	3	78	0	76	35	5	33	25	1.79
7205--7295	42	2.2	42	87	0	128	37	7	32	21	1.82
8726--9426	184	3.9	184	96	2	1278	34	15	15	33	1.89
8726--9426	363	1.9	362	96	1	1289	34	15	15	33	1.89
22222--22263	3	14.0	3	100	0	84	0	33	0	66	0.92
26427--26471	20	2.2	20	84	7	56	4	33	8	53	1.52
29100--29140	15	2.7	15	92	0	64	36	0	12	51	1.40
29093--29127	2	17.0	2	88	5	52	45	0	5	48	1.26
33103--33191	45	1.9	47	93	4	155	29	8	22	39	1.84
42826--42967	8	17.6	8	74	16	82	76	0	15	8	1.02
42818--42878	8	8.4	7	84	12	63	73	0	14	11	1.09
42887--42971	7	12.0	7	71	14	59	81	0	14	4	0.85
42893--42976	14	5.6	14	74	13	69	80	0	13	5	0.87
44281--44791	55	9.3	55	92	3	798	26	16	25	31	1.96
58664--58701	20	1.9	20	94	0	67	26	7	26	39	1.83
64853--65224	202	1.8	203	79	5	430	40	12	12	34	1.81
67812--67887	35	2.2	35	90	0	116	38	23	1	36	1.64
68284--68531	130	1.9	130	92	0	415	36	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68298--68562	130	2.0	129	81	4	300	40	13	12	33	1.83
68859--68921	28	2.3	27	78	8	63	46	1	3	49	1.27
69001--69034	16	2.0	18	88	11	54	64	5	2	26	1.30
77844--77868	12	2.1	12	100	0	50	28	16	0	56	1.41
83207--83255	21	2.4	20	73	6	53	26	22	14	36	1.92
83215--83253	21	1.9	20	89	5	60	20	20	15	43	1.88
83243--83296	19	2.8	20	86	5	67	35	24	9	31	1.87
84241--84292	24	2.2	24	92	0	86	21	19	21	38	1.94
86548--86582	6	5.8	6	86	0	52	60	17	0	22	1.37
86876--86973	20	5.2	20	69	16	84	19	21	21	37	1.94
87044--87092	25	2.0	25	95	0	89	24	8	20	46	1.77
87450--87502	24	2.2	24	86	0	70	35	1	13	49	1.53
88451--88493	20	2.2	20	91	0	68	46	20	16	16	1.84
88609--88752	66	2.2	64	91	2	225	50	16	1	31	1.54
88876--88928	24	2.2	24	86	6	72	41	30	1	26	1.66
90153--90228	21	3.6	21	71	7	73	21	22	32	23	1.98
90149--90241	42	2.2	42	80	3	107	21	21	34	22	1.97
92390--92444	20	2.8	19	81	8	65	47	20	16	16	1.83
92476--92515	20	2.0	20	85	0	53	15	12	22	50	1.77
92849--92906	22	2.6	22	91	0	98	18	20	43	17	1.89
93011--93149	20	6.9	20	87	6	201	20	18	24	35	1.95
93011--93149	60	2.3	60	95	2	244	20	18	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93055--93181	40	3.2	40	87	8	145	21	18	23	37	1.94
93159--93242	20	4.2	20	70	3	78	28	19	22	29	1.98
96241--96295	26	2.2	26	84	15	73	63	3	0	32	1.12
101855--101906	14	3.7	14	89	0	77	55	19	13	11	1.68
103189--103231	16	2.6	17	86	13	56	27	2	0	69	1.00
103342--103394	19	2.7	19	85	2	61	37	33	9	18	1.83
103343--103481	20	6.9	21	76	9	85	31	26	11	30	1.91
103525--103574	26	1.9	26	83	0	64	32	18	14	36	1.90
104081--104136	20	2.8	20	89	5	60	25	17	12	44	1.84
104092--104136	20	2.2	20	96	4	81	24	13	11	51	1.73
104134--104190	20	2.8	20	91	0	87	19	12	19	49	1.79
111988--112039	19	2.8	18	82	11	61	40	13	13	32	1.83
114203--114257	23	2.4	23	81	0	65	36	29	18	16	1.92
114203--114264	23	2.7	23	79	0	61	33	27	22	16	1.95
115314--115351	20	1.9	20	94	0	67	21	23	23	31	1.98
119699--119736	20	1.9	20	94	0	67	21	23	23	31	1.98
121363--121434	19	3.7	20	76	9	76	69	0	8	22	1.15
121458--121499	17	2.4	18	92	4	68	71	0	7	21	1.09
122086--122289	74	2.9	70	83	11	227	57	11	1	29	1.42
122230--122268	19	2.0	20	90	5	62	53	10	2	33	1.48

Tables:   1

The End!