Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009603.1 Hibiscus syriacus cultivar Beakdansim tig00116983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1462390
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 7
Found at i:2468 original size:2 final size:2
Alignment explanation
Indices: 2461--2510 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
2451 ATAATGAGAA
*
2461 AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2503 AT AT AT AT
1 AT AT AT AT
2511 CAATGTCATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13243 original size:21 final size:21
Alignment explanation
Indices: 13217--13262 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
13207 GCCCAGGATT
*
13217 GTCGAGTGCAGCGAAGAGGGC
1 GTCGAGTGCAACGAAGAGGGC
*
13238 GTCGAGTGCAACGACGAGGGC
1 GTCGAGTGCAACGAAGAGGGC
13259 GTCG
1 GTCG
13263 CTAGGTTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.46, T:0.11
Consensus pattern (21 bp):
GTCGAGTGCAACGAAGAGGGC
Found at i:18128 original size:16 final size:16
Alignment explanation
Indices: 18107--18137 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18097 TTCAATCAAA
*
18107 TGATGTCATGTGTCAT
1 TGATGTCACGTGTCAT
18123 TGATGTCACGTGTCA
1 TGATGTCACGTGTCA
18138 CCATTCGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (16 bp):
TGATGTCACGTGTCAT
Found at i:18428 original size:25 final size:26
Alignment explanation
Indices: 18400--18449 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
18390 TATATATATA
18400 TATATAAACTT-TAAAAAATATTTTT
1 TATATAAACTTATAAAAAATATTTTT
* * *
18425 TATATTAACTTATTAAATATATTTT
1 TATATAAACTTATAAAAAATATTTT
18450 ATTGTTAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
TATATAAACTTATAAAAAATATTTTT
Found at i:18440 original size:27 final size:26
Alignment explanation
Indices: 18413--18477 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
18403 ATAAACTTTA
18413 AAAAATATTTTTTATATTAACTT-ATT
1 AAAAATATTTTTT-TATTAACTTAATT
* * *
18439 AAATATATTTTATTGTTAACTTAATTT
1 AAAAATATTTTTTTATTAACTTAA-TT
18466 AAAAATATTTTT
1 AAAAATATTTTT
18478 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 8 0.25
26 12 0.38
27 12 0.38
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.54
Consensus pattern (26 bp):
AAAAATATTTTTTTATTAACTTAATT
Found at i:18457 original size:25 final size:26
Alignment explanation
Indices: 18415--18480 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
18405 AAACTTTAAA
*
18415 AAATATTTTTTATATTAACTT-A-TT
1 AAATATATTTTATATTAACTTAATTT
*
18439 AAATATATTTTATTGTTAACTTAATTT
1 AAATATATTTTA-TATTAACTTAATTT
*
18466 AAAAATATTTT-TATT
1 AAATATATTTTATATT
18481 TTTATTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 11 0.31
25 11 0.31
26 1 0.03
27 12 0.34
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (26 bp):
AAATATATTTTATATTAACTTAATTT
Found at i:18493 original size:28 final size:29
Alignment explanation
Indices: 18439--18515 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 29
18429 TTAACTTATT
18439 AAATATATTTTATTGTTAACTTAATTTAA
1 AAATATATTTTATTGTTAACTTAATTTAA
* ** *
18468 AAATAT-TTTTATTTTTATTTTTATTTAA
1 AAATATATTTTATTGTTAACTTAATTTAA
*
18496 GAATAAATATTTTA-TGTTAA
1 -AA-ATATATTTTATTGTTAA
18516 AACTATATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
28 18 0.47
29 8 0.21
30 7 0.18
31 5 0.13
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (29 bp):
AAATATATTTTATTGTTAACTTAATTTAA
Found at i:18555 original size:30 final size:29
Alignment explanation
Indices: 18519--18576 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
18509 ATGTTAAAAC
*
18519 TATATTTAATAATTTAAAATAATAATATAA
1 TATATTTAATAAATTAAAATAA-AATATAA
*
18549 TATATTTAATAAATTAAGATAAAATATA
1 TATATTTAATAAATTAAAATAAAATATA
18577 TACTTGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (29 bp):
TATATTTAATAAATTAAAATAAAATATAA
Found at i:21338 original size:26 final size:23
Alignment explanation
Indices: 21293--21340 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
21283 AAAACTATAA
21293 ATATATAAAAATAAATTTATATT
1 ATATATAAAAATAAATTTATATT
*
21316 ATATAATATAAATAACATATTATAT
1 ATAT-ATAAAAATAA-AT-TTATAT
21341 AATAAGGTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 9 0.43
25 2 0.10
26 6 0.29
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATATATAAAAATAAATTTATATT
Found at i:30233 original size:30 final size:30
Alignment explanation
Indices: 30197--30288 Score: 109
Period size: 30 Copynumber: 3.0 Consensus size: 30
30187 CCGAATGACC
30197 ACTATCCATATGTTCTGAAGAACATAGGTA
1 ACTATCCATATGTTCTGAAGAACATAGGTA
* *
30227 ACTATCCATATGTCCCT-AAGGACATAGGTAA
1 ACTATCCATATGT-TCTGAAGAACATAGGT-A
30258 ACTATCCATATG-TCTTGAA-AGACATAGGTA
1 ACTATCCATATGTTC-TGAAGA-ACATAGGTA
30288 A
1 A
30289 TATGTCCACA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
29 1 0.02
30 27 0.51
31 25 0.47
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (30 bp):
ACTATCCATATGTTCTGAAGAACATAGGTA
Found at i:30264 original size:31 final size:31
Alignment explanation
Indices: 30197--30288 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 31
30187 CCGAATGACC
* *
30197 ACTATCCATATGTTCTGAAGAACATAGGT-A
1 ACTATCCATATGTCCTGAAGGACATAGGTAA
30227 ACTATCCATATGTCCCT-AAGGACATAGGTAA
1 ACTATCCATATGT-CCTGAAGGACATAGGTAA
* *
30258 ACTATCCATATGTCTTGAAAGACATAGGTAA
1 ACTATCCATATGTCCTGAAGGACATAGGTAA
30289 TATGTCCACA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
30 26 0.47
31 29 0.53
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTATCCATATGTCCTGAAGGACATAGGTAA
Found at i:30302 original size:31 final size:31
Alignment explanation
Indices: 30197--30315 Score: 102
Period size: 31 Copynumber: 3.9 Consensus size: 31
30187 CCGAATGACC
*
30197 ACTATCCATATGT-TCTG-AAGAACATAGGT-A
1 ACTATCCACATGTCTC-GAAAG-ACATAGGTAA
* * * *
30227 ACTATCCATATGTCCCTAAGGACATAGGTAA
1 ACTATCCACATGTCTCGAAAGACATAGGTAA
* *
30258 ACTATCCATATGTCTTGAAAGACATAGGTAA
1 ACTATCCACATGTCTCGAAAGACATAGGTAA
* *
30289 TA-TGTCCACATGTCTCGAAAAACATAG
1 -ACTATCCACATGTCTCGAAAGACATAG
30316 ATAACCCTCG
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
30 21 0.28
31 52 0.70
32 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTATCCACATGTCTCGAAAGACATAGGTAA
Found at i:32884 original size:16 final size:16
Alignment explanation
Indices: 32848--32881 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32838 CACGTGAGGA
32848 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
32864 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
32881 T
1 T
32882 ATTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:39276 original size:20 final size:20
Alignment explanation
Indices: 39234--39282 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
39224 TAACTTTTTC
*
39234 TTTTATCTTTCATTATTCAT
1 TTTTATCTTTCATTATTAAT
* *
39254 TTTTCTCTTTCATT-TTAAC
1 TTTTATCTTTCATTATTAAT
*
39273 TTTTACCTTT
1 TTTTATCTTT
39283 TCTCTTTCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTATCTTTCATTATTAAT
Found at i:43104 original size:17 final size:16
Alignment explanation
Indices: 43073--43106 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
43063 CACGTGAGGA
43073 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
43089 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
43106 T
1 T
43107 ACTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:48436 original size:23 final size:23
Alignment explanation
Indices: 48404--48482 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 23
48394 TTGGTCCAGA
*
48404 GGGAATCGATACCCCCCTTGAAG
1 GGGAACCGATACCCCCCTTGAAG
* *
48427 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCCCTTGAAG
* *
48450 GGGAACCGAT-TCCCCC-TGTAG
1 GGGAACCGATACCCCCCTTGAAG
*
48471 GGGAATCGATAC
1 GGGAACCGATAC
48483 TCCCTGGAGG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 13 0.28
22 4 0.09
23 30 0.64
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (23 bp):
GGGAACCGATACCCCCCTTGAAG
Found at i:48486 original size:23 final size:22
Alignment explanation
Indices: 48416--48480 Score: 96
Period size: 23 Copynumber: 3.0 Consensus size: 22
48406 GAATCGATAC
48416 CCCCCTTGAAGGGGAACCGATT
1 CCCCCTTGAAGGGGAACCGATT
48438 CCCCCTTTGAAGGGGAACCGATT
1 CCCCC-TTGAAGGGGAACCGATT
* *
48461 CCCCC-TGTAGGGGAATCGAT
1 CCCCCTTGAAGGGGAACCGAT
48481 ACTCCCTGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.32
22 5 0.12
23 22 0.55
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCGATT
Found at i:52451 original size:20 final size:20
Alignment explanation
Indices: 52426--52473 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
52416 AATCAAGCAT
52426 ACATACATTTCATATTAATC
1 ACATACATTTCATATTAATC
52446 ACATACATTTCATATTAATC
1 ACATACATTTCATATTAATC
52466 ACATACAT
1 ACATACAT
52474 CTAATCACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.38
Consensus pattern (20 bp):
ACATACATTTCATATTAATC
Found at i:56638 original size:20 final size:20
Alignment explanation
Indices: 56607--56645 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
56597 CTCTTGCATT
56607 CATATTTTATATC-TCATAA
1 CATATTTTATATCATCATAA
56626 CATATTCTTATATCATCATA
1 CATATT-TTATATCATCATA
56646 TAAGTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 7 0.39
21 5 0.28
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
CATATTTTATATCATCATAA
Found at i:57007 original size:31 final size:31
Alignment explanation
Indices: 56941--57090 Score: 171
Period size: 31 Copynumber: 4.9 Consensus size: 31
56931 ATTGCCACTA
* * **
56941 TCCATAAGTTTCG-AAGAACATAGGTAATTA-
1 TCCATATGTCTCGAAAG-ACATAGGTAAACAG
* * *
56971 TCCATATGTCCCTAAGGACATAGGTAAACTA-
1 TCCATATGTCTCGAAAGACATAGGTAAAC-AG
*
57002 TCCATATGTCTCGAAAGACATAGGTAATCAG
1 TCCATATGTCTCGAAAGACATAGGTAAACAG
*
57033 TCCATATGTCTCGAAAGACATAGGTAATCAG
1 TCCATATGTCTCGAAAGACATAGGTAAACAG
*
57064 TCAATATGTCTCGAAAGACATAGGTAA
1 TCCATATGTCTCGAAAGACATAGGTAA
57091 CCTTCGACTC
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
30 20 0.19
31 85 0.81
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (31 bp):
TCCATATGTCTCGAAAGACATAGGTAAACAG
Found at i:58169 original size:64 final size:65
Alignment explanation
Indices: 58083--58203 Score: 154
Period size: 65 Copynumber: 1.9 Consensus size: 65
58073 CCCCTTGAGA
* ** * *
58083 TATCGGTACCCTTGTTGTATTCTGTTA-GTTTTTCATTCAAGAGGGTATCGGTACCTAACTAGGG
1 TATCGGTACCCTTATTACATTCTGTGATGTTTTTCATTCAAGAGGGTATCAGTACCTAACTAGGG
* * **
58147 TATCGGTACCCTTATTACATTCTGTGATTTTTTTCGTTTGAGAGGGTATCAGTACCT
1 TATCGGTACCCTTATTACATTCTGTGATGTTTTTCATTCAAGAGGGTATCAGTACCT
58204 GTTGAATGGG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
64 23 0.49
65 24 0.51
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.41
Consensus pattern (65 bp):
TATCGGTACCCTTATTACATTCTGTGATGTTTTTCATTCAAGAGGGTATCAGTACCTAACTAGGG
Found at i:62832 original size:16 final size:16
Alignment explanation
Indices: 62793--62822 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62783 AAAAACTTTA
62793 AAATA-ATAATAATAG
1 AAATATATAATAATAG
62808 AAATATATAATAATA
1 AAATATATAATAATA
62823 TAATAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
AAATATATAATAATAG
Found at i:68663 original size:42 final size:42
Alignment explanation
Indices: 68607--69019 Score: 418
Period size: 42 Copynumber: 9.7 Consensus size: 42
68597 ATAATTAGCA
* * ** *
68607 GCGTTTGTATCCAAAAACGCTGCTATAGATATGATTTTTTACG
1 GCGTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
* *
68650 GCGTTTTTTCCAAAAACGCCGCTATAGATCTGACCTTTTACG
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
* * * *
68692 GCGTTTGTTCTAAAAATGCCGCTATATATCTGATCTTTTGCG
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
* * *
68734 GCGTTTGTTCCAAAAACGCCGCTATATATCTAACCTTTTACG
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
* * * *
68776 GCGTTTGTT-CAAAAACGTCGCTATAAATATCGACCTTTTGTG
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCT-GACCTTTTGCG
** *
68818 GCGTTTGTTCCAAAAACGCCGCTATAGATCCAACCTTTTACG
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
* * * * *
68860 GTGTTT-TTCCAAAAAACGCTGTTATATATCTCAGCCTTTTGCG
1 GCGTTTGTTCC-AAAAACGCCGCTATAGATCTGA-CCTTTTGCG
* * * ** *
68903 ACATTTGTTCCAAAAACGCCGCTATAGATACCGATTTTTTGCT
1 GCGTTTGTTCCAAAAACGCCGCTATAGAT-CTGACCTTTTGCG
* *
68946 GCGTTTGTTCCGAAAACGCCGCTATATGTATC-GATCTTTTGCG
1 GCGTTTGTTCCAAAAACGCCGCTATA-G-ATCTGACCTTTTGCG
* *
68989 GCGTTTGTTCAAAAAATGCCGCTATAGATCT
1 GCGTTTGTTCCAAAAACGCCGCTATAGATCT
69020 TGACTGCGCT
Statistics
Matches: 306, Mismatches: 55, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
41 25 0.08
42 160 0.52
43 111 0.36
44 8 0.03
45 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (42 bp):
GCGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCG
Found at i:73262 original size:22 final size:22
Alignment explanation
Indices: 73234--73509 Score: 552
Period size: 22 Copynumber: 12.5 Consensus size: 22
73224 TGCGTTGAAT
73234 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73256 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73278 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73300 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73322 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73344 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73366 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73388 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73410 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73432 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73454 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73476 GCTGAACGGTTCAGCATTCAGC
1 GCTGAACGGTTCAGCATTCAGC
73498 GCTGAACGGTTC
1 GCTGAACGGTTC
73510 CATTAAGAGA
Statistics
Matches: 254, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 254 1.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (22 bp):
GCTGAACGGTTCAGCATTCAGC
Found at i:74328 original size:27 final size:27
Alignment explanation
Indices: 74277--74329 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74267 ACTTTTAGAA
* *
74277 AAATAAACTATTAATGTTATTTTTTTT
1 AAATAAAATATTAATGATATTTTTTTT
*
74304 AAATAAAATATTAAT-ATATTATTTTT
1 AAATAAAATATTAATGATATTTTTTTT
74330 CGAGTTACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (27 bp):
AAATAAAATATTAATGATATTTTTTTT
Found at i:77347 original size:2 final size:2
Alignment explanation
Indices: 77340--77364 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77330 TAAATGAACT
77340 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77365 TGTTCGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77841 original size:11 final size:10
Alignment explanation
Indices: 77820--77844 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77810 TTGCTTCTTC
77820 TTTTATTTTT
1 TTTTATTTTT
77830 TTTTATTTTT
1 TTTTATTTTT
77840 TTTTA
1 TTTTA
77845 CTTATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:77902 original size:12 final size:12
Alignment explanation
Indices: 77885--77915 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
77875 TTATAGTTTA
77885 AATTTATTTCAT
1 AATTTATTTCAT
77897 AATTTATTTCAT
1 AATTTATTTCAT
77909 AATTTAT
1 AATTTAT
77916 ATTTATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (12 bp):
AATTTATTTCAT
Found at i:82048 original size:25 final size:25
Alignment explanation
Indices: 82014--82063 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
82004 GATCAGGAGT
82014 ACTGAAGCATAAACATATAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
*
82039 ACTGAAGCATAAACATGTAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
82064 TGGTGCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (25 bp):
ACTGAAGCATAAACATATAGTGATA
Found at i:82157 original size:2 final size:2
Alignment explanation
Indices: 82150--82511 Score: 724
Period size: 2 Copynumber: 181.0 Consensus size: 2
82140 AATGTATGTA
82150 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82192 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82234 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82276 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82318 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82360 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82402 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82444 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82486 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
82512 AGAAAATAGG
Statistics
Matches: 360, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 360 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:82954 original size:28 final size:28
Alignment explanation
Indices: 82922--83043 Score: 201
Period size: 28 Copynumber: 4.4 Consensus size: 28
82912 AGAGTCGAGG
82922 GTTCTACGTGGTCCTACGGGACATATGT
1 GTTCTACGTGGTCCTACGGGACATATGT
*
82950 GTTCTACGTGGTCCTATGGGACATATGT
1 GTTCTACGTGGTCCTACGGGACATATGT
*
82978 GTTCTACGCGGTCCTACGGGACATATGT
1 GTTCTACGTGGTCCTACGGGACATATGT
83006 GTTCTACGTGGTCCTACGGGACATA-GT
1 GTTCTACGTGGTCCTACGGGACATATGT
*
83033 GGTCCTACGTG
1 -GTTCTACGTG
83044 ACAAATTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 2 0.02
28 86 0.98
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.31
Consensus pattern (28 bp):
GTTCTACGTGGTCCTACGGGACATATGT
Found at i:84181 original size:8 final size:7
Alignment explanation
Indices: 84152--84313 Score: 76
Period size: 8 Copynumber: 23.1 Consensus size: 7
84142 TTATGCATAC
84152 AATATA-
1 AATATAT
84158 AATATAT
1 AATATAT
* *
84165 ACTTTTAT
1 A-ATATAT
84173 AAGTATAT
1 AA-TATAT
84181 AATATA-
1 AATATAT
*
84187 AGTATA-
1 AATATAT
*
84193 CAT-TAT
1 AATATAT
*
84199 ACT-TAT
1 AATATAT
84205 AATACATAT
1 AATA--TAT
84214 AATATA-
1 AATATAT
*
84220 AGTATAT
1 AATATAT
84227 -ATAT-T
1 AATATAT
* *
84232 AGTGTAT
1 AATATAT
84239 -ATATAT
1 AATATAT
84245 -ATATAT
1 AATATAT
84251 -ATATAT
1 AATATAT
84257 ATATATAT
1 A-ATATAT
84265 ATATATAT
1 A-ATATAT
84273 ATATATAT
1 A-ATATAT
84281 ATATATAT
1 A-ATATAT
84289 ATATATAT
1 A-ATATAT
84297 ATATATAT
1 A-ATATAT
84305 ATATATAT
1 A-ATATAT
84313 A
1 A
84314 TCATTAAACA
Statistics
Matches: 128, Mismatches: 16, Indels: 22
0.77 0.10 0.13
Matches are distributed among these distances:
5 3 0.02
6 44 0.34
7 8 0.06
8 66 0.52
9 7 0.05
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (7 bp):
AATATAT
Found at i:84229 original size:2 final size:2
Alignment explanation
Indices: 84210--84314 Score: 162
Period size: 2 Copynumber: 53.0 Consensus size: 2
84200 CTTATAATAC
*
84210 AT AT A- AT AT A- AGT AT AT AT AT -T AGT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
84251 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84293 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
84315 CATTAAACAT
Statistics
Matches: 96, Mismatches: 2, Indels: 10
0.89 0.02 0.09
Matches are distributed among these distances:
1 3 0.03
2 91 0.95
3 2 0.02
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84829 original size:2 final size:2
Alignment explanation
Indices: 84824--84902 Score: 91
Period size: 2 Copynumber: 43.0 Consensus size: 2
84814 TAATATCGAA
*
84824 AT AT AT A- AT AT -T AT AT AT AT A- AT -T A- AT AT A- AA AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
84859 AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84901 AT
1 AT
84903 CGGGGCGGGG
Statistics
Matches: 68, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
1 7 0.10
2 61 0.90
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:84839 original size:33 final size:30
Alignment explanation
Indices: 84795--84875 Score: 117
Period size: 33 Copynumber: 2.6 Consensus size: 30
84785 CCCAAACCCG
84795 AAAATATTATATATATAATTAATATCGAAATAT
1 AAAATATTATATATATAATTAATAT--AAA-AT
*
84828 ATAATATTATATATATAATTAATATAAAAT
1 AAAATATTATATATATAATTAATATAAAAT
84858 AAAATATATATATATATA
1 AAAATAT-TATATATATA
84876 TATATATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 8 0.18
31 13 0.29
33 24 0.53
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (30 bp):
AAAATATTATATATATAATTAATATAAAAT
Found at i:85098 original size:2 final size:2
Alignment explanation
Indices: 85091--85142 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
85081 ACTTATGTGA
85091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85133 AT AT AT AT AT
1 AT AT AT AT AT
85143 CATTATATCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85339 original size:17 final size:17
Alignment explanation
Indices: 85267--85339 Score: 53
Period size: 17 Copynumber: 4.2 Consensus size: 17
85257 TTAATTCATT
85267 ATTATATAAATTAAACTT-
1 ATTATAT-AATTAAA-TTA
*
85285 A-TAAATAATTAAATTAA
1 ATTATATAATTAAATT-A
*
85302 TATTATATAATCT-AATAA
1 -ATTATATAAT-TAAATTA
*
85320 ATTATTTAATTAAATTA
1 ATTATATAATTAAATTA
85337 ATT
1 ATT
85340 TAATGATTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
15 2 0.05
16 8 0.18
17 20 0.45
18 3 0.07
19 10 0.23
20 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTATATAATTAAATTA
Found at i:85355 original size:13 final size:13
Alignment explanation
Indices: 85339--85383 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
85329 TTAAATTAAT
85339 TTAATGATTATAA
1 TTAATGATTATAA
85352 TTAA-GATTTATAA
1 TTAATGA-TTATAA
*
85365 TATAAGGATTATAA
1 T-TAATGATTATAA
85379 TTAAT
1 TTAAT
85384 ATAGAAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 2 0.07
13 14 0.50
14 10 0.36
15 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
TTAATGATTATAA
Found at i:85500 original size:19 final size:19
Alignment explanation
Indices: 85476--85517 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
85466 TATATGAAAT
*
85476 TCAAAATCTCACAACTTCA
1 TCAAAATCTCACAACTACA
* *
85495 TCAAAATCTTACACCTACA
1 TCAAAATCTCACAACTACA
85514 TCAA
1 TCAA
85518 CTGTAACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.26
Consensus pattern (19 bp):
TCAAAATCTCACAACTACA
Found at i:87703 original size:65 final size:63
Alignment explanation
Indices: 87509--87714 Score: 199
Period size: 65 Copynumber: 3.2 Consensus size: 63
87499 CCAAGAGTGT
* * *
87509 ATCGATGCATCAAGTGCATTCGATGATTT-A-AAATAGC-CAAAGTGCATCGATGCATGGCTGGT
1 ATCGATGCATCAAATGCATTCGATG-TTTCATAAA-ATCTC--AGTGCATCGATGCATGGTTGGT
87571 GC
62 GC
*
87573 ATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTAT-GTG
1 ATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGGT-TGGTG
87637 C
63 C
* **
87638 ATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGGATTGGT
1 ATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGG-TTGGT
87701 GC
62 GC
*
87703 ATCGGTGCATCA
1 ATCGATGCATCA
87715 CTCTGAAAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 48 0.40
65 61 0.50
66 5 0.04
67 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (63 bp):
ATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTTGGTGC
Found at i:94276 original size:22 final size:21
Alignment explanation
Indices: 94236--94275 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
94226 GATTTTATTT
94236 TCATTTTTCAATTTTAAAACA
1 TCATTTTTCAATTTTAAAACA
94257 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
94276 ATAATTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:96341 original size:65 final size:64
Alignment explanation
Indices: 96204--96413 Score: 201
Period size: 65 Copynumber: 3.2 Consensus size: 64
96194 TGCACTAAGA
* * *
96204 GTGCATCGATCCATCAAGTGCATTCGATGATTTAAAATAGCCAAAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTAAAATAGCCAAAGTGCATCGATGCATGGCTG
* ** *
96268 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATGTTTT-A-AAATAGCCAAAGTGCATCGATGCATGGCT
*
96331 AT
64 -G
* ** ** ** *
96333 GTGCATCGATGCATGAAATGCATTCGATG-TTTAATTTAATTCATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTAAAAT-AGCCAAAGTGCATCGATGCATGG-CT
96397 G
64 G
*
96398 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
96414 CTCTGAAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 52 0.43
65 62 0.52
66 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTAAAATAGCCAAAGTGCATCGATGCATGGCTG
Found at i:98373 original size:16 final size:16
Alignment explanation
Indices: 98354--98424 Score: 72
Period size: 16 Copynumber: 4.3 Consensus size: 16
98344 ATCTATTTTA
*
98354 ATTAATATATTTATAT
1 ATTATTATATTTATAT
*
98370 ATTATTATATTTTAGTTT
1 ATTATTATA-TTTA-TAT
*
98388 TTTATTATATTTA-ATT
1 ATTATTATATTTATA-T
*
98404 ATTATTATATTTATTT
1 ATTATTATATTTATAT
98420 ATTAT
1 ATTAT
98425 ATTCATTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
16 27 0.60
17 8 0.18
18 10 0.22
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (16 bp):
ATTATTATATTTATAT
Found at i:98420 original size:29 final size:28
Alignment explanation
Indices: 98361--98427 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 28
98351 TTAATTAATA
*
98361 TATTTA-TATA-TTATTATATTTTAGTT
1 TATTTATTATATTTATTATATTATAGTT
98387 T-TTTATTATATTTAATTATTATTATA-TT
1 TATTTATTATATTT-ATTA-TATTATAGTT
98415 TATTTATTATATT
1 TATTTATTATATT
98428 CATTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
25 4 0.11
26 5 0.14
27 2 0.06
28 7 0.20
29 17 0.49
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.67
Consensus pattern (28 bp):
TATTTATTATATTTATTATATTATAGTT
Found at i:101703 original size:19 final size:19
Alignment explanation
Indices: 101679--101722 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
101669 TCGATGGCAA
101679 CTGCAATTGTCAAATTAAG
1 CTGCAATTGTCAAATTAAG
101698 CTGCAATTGTCAAATTAAG
1 CTGCAATTGTCAAATTAAG
101717 CTGCAA
1 CTGCAA
101723 CTCGGTGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CTGCAATTGTCAAATTAAG
Found at i:108443 original size:18 final size:18
Alignment explanation
Indices: 108396--108445 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
108386 CGAATAATAA
*
108396 TATTTCCGAAGCATATATT
1 TATTT-CGAAACATATATT
108415 TATTTTC-AAACATATATT
1 TA-TTTCGAAACATATATT
108433 TATTTCGAAACAT
1 TATTTCGAAACAT
108446 TTTTCCGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.14
18 18 0.64
19 3 0.11
20 3 0.11
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (18 bp):
TATTTCGAAACATATATT
Found at i:115042 original size:25 final size:23
Alignment explanation
Indices: 115014--115072 Score: 55
Period size: 25 Copynumber: 2.4 Consensus size: 23
115004 TTGCATTCTT
115014 ATTTATTTTAGTCTTTATATATTTA
1 ATTTATTTTA-TCTTT-TATATTTA
** *
115039 ATTTCGTTTATCTTTTTTATTTA
1 ATTTATTTTATCTTTTATATTTA
115062 ATAATTATTTT
1 AT--TTATTTT
115073 TTTGTTTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
23 9 0.33
24 5 0.19
25 13 0.48
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.66
Consensus pattern (23 bp):
ATTTATTTTATCTTTTATATTTA
Found at i:117182 original size:16 final size:17
Alignment explanation
Indices: 117150--117195 Score: 67
Period size: 16 Copynumber: 2.7 Consensus size: 17
117140 CTAAATTGTT
*
117150 TAAATTAAATATAAGATC
1 TAAATT-AATATTAGATC
117168 TAAATT-ATATTAGATC
1 TAAATTAATATTAGATC
117184 TAAATTAATATT
1 TAAATTAATATT
117196 TAAGGAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 15 0.58
17 5 0.19
18 6 0.23
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (17 bp):
TAAATTAATATTAGATC
Found at i:119403 original size:19 final size:19
Alignment explanation
Indices: 119379--119417 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
119369 ATTATCATTG
119379 ATAAAATTATAAAATTTTA
1 ATAAAATTATAAAATTTTA
* *
119398 ATAAAATTATGAGATTTTA
1 ATAAAATTATAAAATTTTA
119417 A
1 A
119418 GTTTATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAAAATTATAAAATTTTA
Found at i:120957 original size:26 final size:26
Alignment explanation
Indices: 120922--120973 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
120912 ATAATTAGTT
120922 TATATAGTTCATTAATAAACTATATA
1 TATATAGTTCATTAATAAACTATATA
* **
120948 TATATAGTTCGTTTGTAAACTATATA
1 TATATAGTTCATTAATAAACTATATA
120974 GTTTATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (26 bp):
TATATAGTTCATTAATAAACTATATA
Found at i:121080 original size:31 final size:31
Alignment explanation
Indices: 121040--121275 Score: 121
Period size: 33 Copynumber: 7.6 Consensus size: 31
121030 AAATATCAAC
*
121040 TATAGTATATAGTTTATAAATAAATTATAATA
1 TATA-TATATAGTTTATATATAAATTATAATA
* * * *
121072 TATATATATA-TATATATATATATATATAGTT
1 TATATATATAGTTTATATATAAAT-TATAATA
* * * *
121103 TTTATATATAGTTCATATGTAAACTAT-ATA
1 TATATATATAGTTTATATATAAATTATAATA
* ** * *
121133 -GTATATATAGTTTATATATGTAGTAT-GTA
1 TATATATATAGTTTATATATAAATTATAATA
* **
121162 CTATATAAATAGTTTATATAGTTCATTAATAA-A
1 -TATATATATAGTTTATATA-TAAATT-ATAATA
* * *
121195 CTATATATATAGTTCATATGTAAATTATATAGTT
1 -TATATATATAGTTTATATATAAATTATA-A-TA
* * *
121229 TATATATATAGTTCATATGTAAACTACTAA-A
1 TATATATATAGTTTATATATAAATTA-TAATA
121260 T-TATATATA--TTATATA
1 TATATATATAGTTTATATA
121276 GTTTACATAG
Statistics
Matches: 157, Mismatches: 36, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
28 5 0.03
29 22 0.14
30 19 0.12
31 43 0.27
32 20 0.13
33 46 0.29
34 2 0.01
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (31 bp):
TATATATATAGTTTATATATAAATTATAATA
Found at i:121112 original size:2 final size:2
Alignment explanation
Indices: 121009--121099 Score: 73
Period size: 2 Copynumber: 45.0 Consensus size: 2
120999 TAATGTAAAT
*
121009 TA TA TA TA T- TA TA TA GTA TA TA AA TA TCA -A CTA TA GTA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA T-A TA -TA TA -TA TA TA
* * *
121051 GTT TA TA AA TA AA T- TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121092 TA TA TA TA
1 TA TA TA TA
121100 GTTTTTATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
1 4 0.06
2 61 0.85
3 7 0.10
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:121150 original size:20 final size:20
Alignment explanation
Indices: 121064--121388 Score: 106
Period size: 20 Copynumber: 15.9 Consensus size: 20
121054 TATAAATAAA
121064 TTATAATATA-TATATATA-T
1 TTAT-ATATAGTATATATAGT
*
121083 ATATATATA-TATATATAGTTT
1 TTATATATAGTATATATAG--T
121104 TTATATATAGT-TCATAT-GT
1 TTATATATAGTAT-ATATAGT
**
121123 AAACTATATAGTATATATAGT
1 TTA-TATATAGTATATATAGT
* *
121144 TTATATAT-GTAGTATGTACT
1 TTATATATAGTA-TATATAGT
* * *
121164 ATATAAATAGTTTATATAGTT
1 TTATATATAGTATATATAG-T
*
121185 CATTAATAAACTA-TATATATAGT
1 --TT-ATATA-TAGTATATATAGT
* * *
121208 TCATATGTA-AATTATATAGT
1 TTATATATAGTA-TATATAGT
121228 TTATATATA-TAGT-TCATA-T
1 TTATATATAGTA-TAT-ATAGT
* * *
121247 GTA-A-ACTACTAAATTATA-T
1 TTATATA-TAGTATA-TATAGT
* * *
121266 ATATTATATAGTTTACATAGTT
1 TTA-TATATAGTATATATAG-T
*
121288 TGTATATATAGTTTATATAGT
1 T-TATATATAGTATATATAGT
121309 TTATACATATAGT-TCATAT-GT
1 TTAT--ATATAGTAT-ATATAGT
**
121330 AAACTATATAGTATATATAGT
1 TTA-TATATAGTATATATAGT
* * *
121351 TTACATATACTATATATGGT
1 TTATATATAGTATATATAGT
*
121371 TTATATATAGTTTATATA
1 TTATATATAGTATATATA
121389 CTACTATCTA
Statistics
Matches: 230, Mismatches: 43, Indels: 65
0.68 0.13 0.19
Matches are distributed among these distances:
17 1 0.00
18 16 0.07
19 23 0.10
20 103 0.45
21 34 0.15
22 34 0.15
23 4 0.02
24 13 0.06
25 2 0.01
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (20 bp):
TTATATATAGTATATATAGT
Found at i:121375 original size:11 final size:11
Alignment explanation
Indices: 121341--121388 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
121331 AACTATATAG
121341 TATATATAGTT
1 TATATATAGTT
* *
121352 TACATATA--C
1 TATATATAGTT
*
121361 TATATATGGTT
1 TATATATAGTT
121372 TATATATAGTT
1 TATATATAGTT
121383 TATATA
1 TATATA
121389 CTACTATCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
9 6 0.21
11 23 0.79
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (11 bp):
TATATATAGTT
Found at i:121461 original size:207 final size:206
Alignment explanation
Indices: 121084--121461 Score: 435
Period size: 207 Copynumber: 1.8 Consensus size: 206
121074 TATATATATA
* * *
121084 TATATATATATATATAGTTTTTATATATAGTTCATATGTAAACTATATAGTATATATAGTTTATA
1 TATATATATATATATAGTTTATACATATAGTTCATATGTAAACTATATAGTATATATAGTTTACA
* * * * *
121149 TATGTAGTATGTACTATATAAATAGTTTATATAGTTCATTAATAAACTATATATATAGTTCATAT
66 TATCTAGTATATACTATATAAATAGTTTATATACTACATTAATAAACTATATATATAGTTCATAA
* ** * *** *
121214 GTAAATTATATAGTTTATATATATAGTTCATATGTAAACTACTAAATTATATATATTATATAGTT
131 ATAAACCATAAACCATATATATATAGTTCATATATAAACTACTAAATTATATATATTATATAGTT
121279 TACATAGTTTG
196 TACATAGTTTG
*
121290 TATATATAGTTTATATAGTTTATACATATAGTTCATATGTAAACTATATAGTATATATAGTTTAC
1 TATATATA-TATATATAGTTTATACATATAGTTCATATGTAAACTATATAGTATATATAGTTTAC
** * * *
121355 ATATACTA-TATATGGTTTATATATAGTTTATATACTACTATCT-ATAAACTATGTATA-A-TTA
65 ATAT-CTAGTATATACTATATAAATAGTTTATATACTAC-AT-TAATAAACTATATATATAGTT-
* *
121416 CATAAATTAACCCTAAACCATATATACTATA-TAT-ATATATAAACTA
126 CATAAATAAACCATAAACCATATATA-TATAGT-TCATATATAAACTA
121462 TATAGTTTTT
Statistics
Matches: 141, Mismatches: 24, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
206 10 0.07
207 108 0.77
208 22 0.16
209 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (206 bp):
TATATATATATATATAGTTTATACATATAGTTCATATGTAAACTATATAGTATATATAGTTTACA
TATCTAGTATATACTATATAAATAGTTTATATACTACATTAATAAACTATATATATAGTTCATAA
ATAAACCATAAACCATATATATATAGTTCATATATAAACTACTAAATTATATATATTATATAGTT
TACATAGTTTG
Found at i:121536 original size:17 final size:17
Alignment explanation
Indices: 121496--121548 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
121486 AATAAACTAT
*
121496 ATAATTTATACATAGTATAT
1 ATAATTTATA-AT--TATAC
121516 ATAATTTATAATTATAC
1 ATAATTTATAATTATAC
* *
121533 ATAATATATAAATATA
1 ATAATTTATAATTATA
121549 AGATGTATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 18 0.60
19 2 0.07
20 10 0.33
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (17 bp):
ATAATTTATAATTATAC
Found at i:121557 original size:26 final size:26
Alignment explanation
Indices: 121493--121548 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
121483 ATTAATAAAC
*
121493 TATATAATTTATACATAGTATATATAA
1 TATATAA-TTATACATAATATATATAA
*
121520 TTTATAATTATACATAATATATA-AA
1 TATATAATTATACATAATATATATAA
121545 TATA
1 TATA
121549 AGATGTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 15 0.58
27 6 0.23
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
TATATAATTATACATAATATATATAA
Found at i:121602 original size:22 final size:20
Alignment explanation
Indices: 121563--121767 Score: 91
Period size: 20 Copynumber: 9.8 Consensus size: 20
121553 GTATAGTTTA
* *
121563 TATATAATTCATATATAAAT
1 TATATAATTTATATATAAAC
121583 TATATAATTTATAGTAATAAAC
1 TATATAATTTATA-T-ATAAAC
* **
121605 TATATAGTTTATATAT-AGT
1 TATATAATTTATATATAAAC
* *
121624 TCA-ATAGTTCATATATAAAC
1 T-ATATAATTTATATATAAAC
* *
121644 TATATAGTTTATACATAATA-
1 TATATAATTTATATATAA-AC
*
121664 TATATAGAATATAATAATATAAA-
1 TATAT--AAT-TTAT-ATATAAAC
* * *
121687 TATA-AACTATATGGTTTATATA-
1 TATATAA-T-T-T-ATATATAAAC
*
121709 TATATAGTTTATATATATAA-
1 TATATAATTTATATATA-AAC
121729 TATATATACTTTATATATAAAC
1 TATATA-A-TTTATATATAAAC
*
121751 TATATAGTTTATATATA
1 TATATAATTTATATATA
121768 GTTTATTAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
19 20 0.14
20 55 0.38
21 9 0.06
22 45 0.31
23 10 0.07
24 5 0.03
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.44
Consensus pattern (20 bp):
TATATAATTTATATATAAAC
Found at i:121639 original size:2 final size:2
Alignment explanation
Indices: 121634--121767 Score: 53
Period size: 2 Copynumber: 65.5 Consensus size: 2
121624 TCAATAGTTC
* * * *
121634 AT AT AT AA ACT AT AT AGT TT AT AC AT A- AT AT AT AT AG A- AT AT
1 AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
121676 A- AT A- AT AT AA AT AT AA ACT AT AT GGT TT AT AT AT AT AT AGT
1 AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT AT A-T
* * *
121717 TT AT AT AT AT A- AT AT AT AT ACT TT AT AT AT AA ACT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT A-T
*
121759 TT AT AT AT A
1 AT AT AT AT A
121768 GTTTATTAAT
Statistics
Matches: 97, Mismatches: 22, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
1 5 0.05
2 84 0.87
3 8 0.08
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (2 bp):
AT
Found at i:121712 original size:15 final size:15
Alignment explanation
Indices: 121694--121727 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
121684 AAATATAAAC
*
121694 TATATGGTTTATATA
1 TATATAGTTTATATA
121709 TATATAGTTTATATA
1 TATATAGTTTATATA
121724 TATA
1 TATA
121728 ATATATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:121734 original size:13 final size:13
Alignment explanation
Indices: 121703--121736 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
121693 CTATATGGTT
*
121703 TATATATATATAG
1 TATATATATATAA
*
121716 TTTATATATATAA
1 TATATATATATAA
121729 TATATATA
1 TATATATA
121737 CTTTATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
TATATATATATAA
Found at i:121780 original size:13 final size:11
Alignment explanation
Indices: 121707--121773 Score: 61
Period size: 11 Copynumber: 6.3 Consensus size: 11
121697 ATGGTTTATA
121707 TATATATAGTT
1 TATATATAGTT
*
121718 TATATATA-TAA
1 TATATATAGT-T
*
121729 TATATATACTT
1 TATATATAGTT
121740 TATATATA---
1 TATATATAGTT
*
121748 AACTATATAGTT
1 TA-TATATAGTT
121760 TATATATAGTT
1 TATATATAGTT
121771 TAT
1 TAT
121774 TAATATAAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 1 0.02
11 36 0.78
12 2 0.04
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (11 bp):
TATATATAGTT
Found at i:122501 original size:27 final size:27
Alignment explanation
Indices: 122463--122515 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
122453 CCAGGACAAA
*
122463 ACGCCCATCCTTCGACATTATGGGCAC
1 ACGCCCATCCTTCAACATTATGGGCAC
122490 ACGCCCATCCTTCAACATTATGGGCA
1 ACGCCCATCCTTCAACATTATGGGCA
122516 TGTCGAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.23
Consensus pattern (27 bp):
ACGCCCATCCTTCAACATTATGGGCAC
Found at i:123707 original size:19 final size:18
Alignment explanation
Indices: 123679--123720 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
123669 GAGGTTTTTA
*
123679 ATATATTTTATACAAAACT
1 ATATAGTTTATACAAAA-T
*
123698 ATATAGTTTATACATAAT
1 ATATAGTTTATACAAAAT
123716 ATATA
1 ATATA
123721 CAGTTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATAGTTTATACAAAAT
Found at i:123725 original size:20 final size:19
Alignment explanation
Indices: 123685--123729 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
123675 TTTAATATAT
*
123685 TTTATACAAAACTATATAG
1 TTTATACAAAACTATACAG
123704 TTTATACATAATA-TATACAG
1 TTTATACA-AA-ACTATACAG
123724 TTTATA
1 TTTATA
123730 TATAGTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 14 0.61
21 1 0.04
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.42
Consensus pattern (19 bp):
TTTATACAAAACTATACAG
Found at i:123791 original size:2 final size:2
Alignment explanation
Indices: 123767--124173 Score: 119
Period size: 2 Copynumber: 206.0 Consensus size: 2
123757 CTATATGGTT
* * * *
123767 TA TA -A TA TA TA AA TT TA TT TA TA TA TA TA -A TA TA TA -A TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
123806 TA TA TA TA CA CTA TA TA -A TT TA TA T- TA T- TA AA T- TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
123845 GTT TA TA CA TA -A TA TA TA TA TT TCA TA TA TA -A TA TA TA -A TA
1 -TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
* * * * *
123886 -A TA TA AA TA TA AA CTA TA TA -A TT TA TA TA TA TA GTT TT TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * *
123928 TA TA -A TA TA TA TA T- TT TA TA TA TA AA CTA TA TA GA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * *
123968 TA TA GTT TA TA T- TA -A TA AA CTA TA TA CTT TA TA CA TA -A TA
1 TA TA -TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
* * *
124008 TA TA TA GT- TCA TA TA TA -A TA GTA TA AA TA TA AA CTA TA TA GTT
1 TA TA TA -TA T-A TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA -TA
* * * * * *
124051 TC TA TA T- TG TT TA TA T- TA -A TA AA CTA TA TA GTT TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
* * *
124092 -A TA TA TA TA GT- TCA TA TA TA GTA TA TA AA TA TA AA TA TA AA
1 TA TA TA TA TA -TA T-A TA TA TA -TA TA TA TA TA TA TA TA TA TA
* *
124133 CTA TA TA GTT TA TA T- TA TA TA TA TA TA TA TA TA TA TT TA TA
1 -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124174 ATTATTTTAA
Statistics
Matches: 292, Mismatches: 66, Indels: 94
0.65 0.15 0.21
Matches are distributed among these distances:
1 26 0.09
2 243 0.83
3 23 0.08
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:123806 original size:20 final size:20
Alignment explanation
Indices: 123706--123971 Score: 141
Period size: 20 Copynumber: 13.3 Consensus size: 20
123696 CTATATAGTT
*
123706 TATACATAATATATACAGTTTA
1 TATATATAATATATA-A-TTTA
*
123728 TATATAGTAA-ATAATAATATA
1 TATATA-TAATAT-ATAATTTA
* **
123749 AATATA-AACTATATGGTTTA
1 TATATATAA-TATATAATTTA
*
123769 TAATATATAA-AT-TTATTTA
1 T-ATATATAATATATAATTTA
123788 TATATATAATATATAATTTA
1 TATATATAATATATAATTTA
* *
123808 TATATACACTATATAATTTA
1 TATATATAATATATAATTTA
*
123828 TAT-TATTAA-ATTATATAGTT-
1 TATATA-TAATA-TATA-ATTTA
*
123848 TATACATAATATATATATTT-
1 TATATATAATATATA-ATTTA
*
123868 CATATATAATATATAA--TA
1 TATATATAATATATAATTTA
*
123886 -ATATA-AATATA-AA-CTA
1 TATATATAATATATAATTTA
* * *
123902 TATAATTTATATATATAGTTTT
1 TAT-ATATA-ATATATAATTTA
123924 TATATATAATATATATATTT-
1 TATATATAATATATA-ATTTA
123944 TATATATAAACTATATAGA-TTA
1 TATATAT-AA-TATATA-ATTTA
123966 TATATA
1 TATATA
123972 GTTTATATTA
Statistics
Matches: 193, Mismatches: 26, Indels: 50
0.72 0.10 0.19
Matches are distributed among these distances:
15 2 0.01
16 8 0.04
17 8 0.04
18 10 0.05
19 15 0.08
20 85 0.44
21 32 0.17
22 27 0.14
23 6 0.03
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (20 bp):
TATATATAATATATAATTTA
Found at i:123978 original size:20 final size:20
Alignment explanation
Indices: 123697--124175 Score: 95
Period size: 20 Copynumber: 23.9 Consensus size: 20
123687 TATACAAAAC
* *
123697 TATATAGTTTATACATAATA
1 TATATAGATTATATATAATA
* * *
123717 TATACAGTTTATATATAGTA
1 TATATAGATTATATATAATA
* *
123737 AATAATA-ATATAAATATAA-A
1 TAT-ATAGAT-TATATATAATA
* *
123757 CTATATGGTTTATA-AT-ATA
1 -TATATAGATTATATATAATA
* **
123776 TAAATTTATT-TATATATATAA
1 TATATAGATTATATATA-AT-A
123797 TATATA-ATTTATATATACACTA
1 TATATAGA-TTATATATA-A-TA
*
123819 TATA-A-TTTATATTATTAA-A
1 TATATAGATTATA-TA-TAATA
* *
123838 TTATATAGTTTATACATAATA
1 -TATATAGATTATATATAATA
*
123859 TATATA-TTTCATATATAATA
1 TATATAGATT-ATATATAATA
*
123879 TATAATA-ATATAAATATAA-A
1 TAT-ATAGAT-TATATATAATA
123899 CTATATA-ATT-TATAT-ATA
1 -TATATAGATTATATATAATA
*
123917 TAGT-T--TTTATATATAATA
1 TA-TATAGATTATATATAATA
**
123935 TATATATTTTATATATAA-A
1 TATATAGATTATATATAATA
*
123954 CTATATAGATTATATATAGT-
1 -TATATAGATTATATATAATA
*
123974 T-TAT--ATTA-ATA-AA-C
1 TATATAGATTATATATAATA
** *
123988 TATATACTTTATACATAATA
1 TATATAGATTATATATAATA
124008 TATATAG-TTCATATATAATA
1 TATATAGATT-ATATATAATA
* * * * *
124028 GTATAAATATAAACTATATAGTTTC
1 -TATATAGAT-TA-TATATA--ATA
* *
124053 TATATTGTTTATAT-TAATAAA
1 TATATAGATTATATATAAT--A
* *
124074 CTATATAGTTTATACATAATA
1 -TATATAGATTATATATAATA
*
124095 TATATAG-TTCATATATAGTA
1 TATATAGATT-ATATATAATA
*
124115 TATA-A-ATATAAATATAA-A
1 TATATAGAT-TATATATAATA
*
124133 CTATATAGTTTATATTATATATA
1 -TATATAGATTATA-TATA-ATA
* *
124156 TATATATATATATTTATAAT
1 TATATAGAT-TATATATAAT
124176 TATTTTAATT
Statistics
Matches: 342, Mismatches: 58, Indels: 117
0.66 0.11 0.23
Matches are distributed among these distances:
14 2 0.01
15 6 0.02
16 6 0.02
17 15 0.04
18 27 0.08
19 29 0.08
20 130 0.38
21 55 0.16
22 50 0.15
23 16 0.05
24 5 0.01
25 1 0.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (20 bp):
TATATAGATTATATATAATA
Found at i:123994 original size:142 final size:139
Alignment explanation
Indices: 123706--124118 Score: 398
Period size: 142 Copynumber: 2.9 Consensus size: 139
123696 CTATATAGTT
* * *
123706 TATACATAATATATACAGTTTATATATAGTAAATAATAATATAAATATAAACTATATGGTTTATA
1 TATACATAATATATA-A-TTTATATATAATATATAATAATATAAATATAAACTATATAGTTTAT-
* *
123771 ATATATAAATTTATT-TATATATATAATATATAATTTATATATACACTATATA-ATT-TATAT--
63 ATATAT-AGTTT-TTATATATA-AT-ATATATAATTTATATATAAACTATATAGATTATATATAG
* * * *
123831 TATTAAATTATATAGTT
124 T-TTATATTATAAACTA
*
123848 TATACATAATATATATATTTCATATATAATATATAATAATATAAATATAAACTATATAATTTATA
1 TATACATAATATATA-ATTT-ATATATAATATATAATAATATAAATATAAACTATATAGTTTATA
*
123913 TATATAGTTTTTATATATAATATATATATTTTATATATAAACTATATAGATTATATATAGTTTAT
64 TATATAGTTTTTATATATAATATATATAATTTATATATAAACTATATAGATTATATATAGTTTAT
123978 ATTAATAAACTA
129 ATT-ATAAACTA
* * * * * * *
123990 TATACTTTATACATAATATATATAGTTCATATATAATAGTATAAATATAAACTATATAGTTTCTA
1 TATACATAATATATAATTTATATA--TAATATATAATAATATAAATATAAACTATATAGTTTATA
* * *
124055 TAT-T-GTTTATAT-TAATAA-ACTATATAGTTTATACATAATA-TATATAG-TTCATATATAGT
64 TATATAGTTTTTATAT-ATAATA-TATATAATTTATATATAA-ACTATATAGATT-ATATATAGT
*
124114 ATATA
125 TTATA
124119 AATATAAATA
Statistics
Matches: 234, Mismatches: 24, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
138 25 0.11
139 11 0.05
140 67 0.29
141 20 0.09
142 111 0.47
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (139 bp):
TATACATAATATATAATTTATATATAATATATAATAATATAAATATAAACTATATAGTTTATATA
TATAGTTTTTATATATAATATATATAATTTATATATAAACTATATAGATTATATATAGTTTATAT
TATAAACTA
Found at i:124000 original size:33 final size:31
Alignment explanation
Indices: 123924--124000 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
123914 ATATAGTTTT
* * *
123924 TATATATAATATATATATTTTATATATAAAC
1 TATATACATTATATATAGTTTATATATAAAC
*
123955 TATATAGATTATATATAGTTTATATTAATAAAC
1 TATATACATTATATATAGTTTATA-T-ATAAAC
*
123988 TATATACTTTATA
1 TATATACATTATA
124001 CATAATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 21 0.54
32 1 0.03
33 17 0.44
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (31 bp):
TATATACATTATATATAGTTTATATATAAAC
Found at i:124004 original size:149 final size:142
Alignment explanation
Indices: 123693--124045 Score: 426
Period size: 142 Copynumber: 2.4 Consensus size: 142
123683 ATTTTATACA
* * *
123693 AAACTATATAGTTTATACATAATATATACAGTTT-ATATATAGTAAATAATAATATAAATATAAA
1 AAACTATATAGTTTATACATAATATATATA-TTTCATATATAATATATAATAATATAAATATAAA
** **
123757 CTATATGGTTTATAATATATAAATTTATTTATATATATAATATATAATTTATATATACACTATAT
65 CTATATAATTTATAATATATAAATTTATTTATATATATAATATATAATAAATATATACACTATAT
*
123822 AATTTATATTATT
130 AATTTATATTAAT
*
123835 AAATTATATAGTTTATACATAATATATATATTTCATATATAATATATAATAATATAAATATAAAC
1 AAACTATATAGTTTATACATAATATATATATTTCATATATAATATATAATAATATAAATATAAAC
** * * * *
123900 TATATAATTTAT-ATATATAGTTTTTATATATAATATATATATTTTATATATAAACTATATAGAT
66 TATATAATTTATAATATATA-AATTTAT-T-T-ATATATATAATATATA-ATAAA-TATATACAC
123964 TATATATAGTTTATATTAAT
125 TATATA-A-TTTATATTAAT
* *
123984 AAACTATATACTTTATACATAATATATATAGTTCATATATAATAGTAT-A-AATATAAACTATA
1 AAACTATATAGTTTATACATAATATATATATTTCATATATAATA-TATAATAATATAAA-TATA
124046 TAGTTTCTAT
Statistics
Matches: 182, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
141 10 0.05
142 72 0.40
143 1 0.01
144 1 0.01
145 14 0.08
146 3 0.02
147 13 0.07
148 9 0.05
149 56 0.31
150 3 0.02
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (142 bp):
AAACTATATAGTTTATACATAATATATATATTTCATATATAATATATAATAATATAAATATAAAC
TATATAATTTATAATATATAAATTTATTTATATATATAATATATAATAAATATATACACTATATA
ATTTATATTAAT
Found at i:124012 original size:33 final size:33
Alignment explanation
Indices: 123949--124012 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
123939 TATTTTATAT
* * * *
123949 ATAAACTATATAGATTATATATAGTTTATATTA
1 ATAAACTATATACATTATACATAATATATATTA
*
123982 ATAAACTATATACTTTATACATAATATATAT
1 ATAAACTATATACATTATACATAATATATAT
124013 AGTTCATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (33 bp):
ATAAACTATATACATTATACATAATATATATTA
Found at i:124045 original size:87 final size:86
Alignment explanation
Indices: 123947--124149 Score: 317
Period size: 87 Copynumber: 2.4 Consensus size: 86
123937 TATATTTTAT
*
123947 ATATAAACTATATAGATTATATATAGTTTATATTAATAAACTATATACTTTATACATAATATATA
1 ATATAAACTATATAGATTCTATATAGTTTATATTAATAAACTATATACTTTATACATAATATATA
124012 TAGTTCATATATAATAGTATAA
66 TAGTTCATATATAATA-TATAA
* * *
124034 ATATAAACTATATAGTTTCTATATTGTTTATATTAATAAACTATATAGTTTATACATAATATATA
1 ATATAAACTATATAGATTCTATATAGTTTATATTAATAAACTATATACTTTATACATAATATATA
*
124099 TAGTTCATATATAGTATATAA
66 TAGTTCATATATAATATATAA
124120 ATATAAA-TATA-A-A--CTATATAGTTTATATTA
1 ATATAAACTATATAGATTCTATATAGTTTATATTA
124150 TATATATATA
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
81 16 0.15
84 1 0.01
85 4 0.04
86 12 0.11
87 76 0.70
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (86 bp):
ATATAAACTATATAGATTCTATATAGTTTATATTAATAAACTATATACTTTATACATAATATATA
TAGTTCATATATAATATATAA
Found at i:124079 original size:149 final size:146
Alignment explanation
Indices: 123693--124098 Score: 402
Period size: 149 Copynumber: 2.8 Consensus size: 146
123683 ATTTTATACA
* * * * *
123693 AAACTATATAGTTTATACATAATATATACAGTTTATATATAGTAAATAATAATATAAATATAA-A
1 AAACTATATAGTTTATACATAATATATATAGTTCATATATAATATATAATAATATAAATATAATT
* * * ** *
123757 CTATATGGTTTATAATATATAAAT-T-T-ATTTATATATATAATATATAATTTATATATACACTA
66 CTATATTGTTTATATTATATAAATATATAATATATATATATAATATATAAACTATATAGACACTA
*
123819 TATAATTTATATTATT
131 TATAATTTATATTAAT
* * *
123835 AAATTATATAGTTTATACATAATATATATATTTCATATATAATATATAATAATATAAATATAA-A
1 AAACTATATAGTTTATACATAATATATATAGTTCATATATAATATATAATAATATAAATATAATT
** ** * *
123899 CTATATAATTTATATATATAGTTTTTATATATAATATATATATTTTATATATAAACTATATAGAT
66 CTATATTGTTTATAT-TATA---TAAATATATAATATATATATATAATATATAAACTATATAGA-
* *
123964 TA-TATATAGTTTATATTAAT
126 CACTATATAATTTATATTAAT
*
123984 AAACTATATACTTTATACATAATATATATAGTTCATATATAATAGTAT-A-AATATAAACTATAT
1 AAACTATATAGTTTATACATAATATATATAGTTCATATATAATA-TATAATAATATAAA-TATA-
* *
124047 AGTTTCTATATTGTTTATATTA-ATAAACTATATAGT-T-TATACATAATATATA
63 A--TTCTATATTGTTTATATTATATAAA-TATATAATATATATATATAATATATA
124099 TAGTTCATAT
Statistics
Matches: 217, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
142 70 0.32
143 4 0.02
146 3 0.01
147 13 0.06
148 12 0.06
149 94 0.43
150 5 0.02
151 1 0.00
152 2 0.01
153 13 0.06
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (146 bp):
AAACTATATAGTTTATACATAATATATATAGTTCATATATAATATATAATAATATAAATATAATT
CTATATTGTTTATATTATATAAATATATAATATATATATATAATATATAAACTATATAGACACTA
TATAATTTATATTAAT
Found at i:125531 original size:25 final size:26
Alignment explanation
Indices: 125497--125550 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
125487 AATTTAATGA
*
125497 TTTGAGATTTTAAGATTTTATT-TTT
1 TTTGAAATTTTAAGATTTTATTATTT
125522 TTTGAAATTTTAAGATTTTATTATTT
1 TTTGAAATTTTAAGATTTTATTATTT
125548 TTT
1 TTT
125551 AATAGAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (26 bp):
TTTGAAATTTTAAGATTTTATTATTT
Found at i:142037 original size:3 final size:3
Alignment explanation
Indices: 142024--142085 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
142014 CGGATCTTTT
** **
142024 TTA TATA TTA TTA TTA TCG TTA TT- TTAA TTA TTA TTA TTA GCA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
142070 TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TT
142086 TACATATTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
2 4 0.09
3 38 0.81
4 5 0.11
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:142604 original size:11 final size:12
Alignment explanation
Indices: 142588--142617 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
142578 AGGGAGTTAC
142588 AGAAAAAAAA-A
1 AGAAAAAAAAGA
142599 AGAAAAAAAAGA
1 AGAAAAAAAAGA
142611 AGAAAAA
1 AGAAAAA
142618 TCAGAGAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAGA
Found at i:147561 original size:22 final size:24
Alignment explanation
Indices: 147536--147590 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 24
147526 GCGAAGATCC
*
147536 AATCAAAGCAAAA-A-CAAAGAAA
1 AATCAAAGAAAAAGAGCAAAGAAA
147558 AATCAAAGAAAAAGAGCAAAG-AA
1 AATCAAAGAAAAAGAGCAAAGAAA
*
147581 AAGCAAAGAA
1 AATCAAAGAA
147591 CAAAAAGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.41
23 12 0.41
24 5 0.17
ACGTcount: A:0.71, C:0.11, G:0.15, T:0.04
Consensus pattern (24 bp):
AATCAAAGAAAAAGAGCAAAGAAA
Found at i:147585 original size:10 final size:11
Alignment explanation
Indices: 147539--147590 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
147529 AAGATCCAAT
147539 CAAAGCAAAAA-
1 CAAAG-AAAAAG
*
147550 CAAAGAAAAAT
1 CAAAGAAAAAG
147561 CAAAGAAAAAGAG
1 CAAAG-AAAA-AG
147574 CAAAG-AAAAG
1 CAAAGAAAAAG
147584 CAAAGAA
1 CAAAGAA
147591 CAAAAAGAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 12 0.33
11 14 0.39
12 4 0.11
13 6 0.17
ACGTcount: A:0.71, C:0.12, G:0.15, T:0.02
Consensus pattern (11 bp):
CAAAGAAAAAG
Found at i:148752 original size:4 final size:4
Alignment explanation
Indices: 148743--148915 Score: 276
Period size: 4 Copynumber: 45.8 Consensus size: 4
148733 AAAAGTTTAC
148743 ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
148789 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
148834 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
148880 ACAT ACAT ACA- ACAT ACAT ACAT AC-- ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
148916 CATAAAATTG
Statistics
Matches: 159, Mismatches: 0, Indels: 20
0.89 0.00 0.11
Matches are distributed among these distances:
2 8 0.05
3 6 0.04
4 145 0.91
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:149554 original size:103 final size:100
Alignment explanation
Indices: 149371--149605 Score: 257
Period size: 103 Copynumber: 2.3 Consensus size: 100
149361 TGAGAATTCT
* * * *
149371 AAAACAAATTGCATCTCGCTTGAGACATTTTTCCTTGAGATACAAATTTTGAATTTGATCACTAA
1 AAAACAAATTTCGTCTCGCTTGAGACATTTTCCCTTGAGATACAAATTTCGAATTTGATCACTAA
149436 AAACAAAATTAATCTCACCTT-AGATTGTTGTTTCTTTC-
66 AAACAAAATTAATCTCA-CTTGAGATTG-T-TTTC--TCA
* *
149474 AAAACAAATTTCGTCTCGCTTGAGAC-TTTTCCCTTTGAGAT-CCAATTTCGAATTTGTTTCAC-
1 AAAACAAATTTCGTCTCGCTTGAGACATTTTCCC-TTGAGATACAAATTTCGAATTTG-ATCACT
* * *
149536 ATTAAACAAAGTTGATCTCACTTGAGATTGTTTTCTCA
64 A-AAAACAAAATTAATCTCACTTGAGATTGTTTTCTCA
*
149574 AAAACAAACTTT-GTCTCGCTTGAGACAATTTC
1 AAAACAAA-TTTCGTCTCGCTTGAGACATTTTC
149606 TCTAAAAACA
Statistics
Matches: 115, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
99 2 0.02
100 22 0.19
101 11 0.10
102 24 0.21
103 56 0.49
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (100 bp):
AAAACAAATTTCGTCTCGCTTGAGACATTTTCCCTTGAGATACAAATTTCGAATTTGATCACTAA
AAACAAAATTAATCTCACTTGAGATTGTTTTCTCA
Found at i:149613 original size:36 final size:36
Alignment explanation
Indices: 149567--149670 Score: 133
Period size: 36 Copynumber: 3.0 Consensus size: 36
149557 TTGAGATTGT
*
149567 TTTCTC-AAAAACAAACTTTGTCTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
** *
149602 TTTCTCTAAAAACAAATTTTGTCTCATTTGAGACTA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
* *
149638 TATCT-T-AAAGCAAATTTTGTCTCGCTTGAGACA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACA
149671 TCATTTTCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
34 23 0.39
35 7 0.12
36 29 0.49
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (36 bp):
TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
Found at i:150157 original size:268 final size:271
Alignment explanation
Indices: 149608--150178 Score: 1021
Period size: 268 Copynumber: 2.1 Consensus size: 271
149598 ACAATTTCTC
149608 TAAAAACAAATTTTGTCTCATTTGAGACTATATCTTAAAGCAAATTTTGTCTCGCTTGAGACATC
1 TAAAAACAAATTTTGTCTCATTTGAGAC-ATATCTTAAAGCAAATTTTGTCTCGCTTGAGACATC
149673 ATTTTCTCTCATAATACAAATTTCAAGGTTGTTGTACTTAAAGCAAAATTAATATCACTTGAGAT
65 ATTTTCTCTCATAATACAAATTTCAAGG-TGTTGTACTTAAAGCAAAATTAATATCACTTGAGAT
149738 TTTCAAAGCTGATTTTGTCTCGCACGAGACGTTTCCCCTTTAAACAAATCCTGAAATTGTTTCAT
129 TTTCAAAGCTGATTTTGTCTCGCACGAGACGTTTCCCCTTTAAACAAATCCTGAAATTGTTTCAT
*
149803 TGAAAACAAAATAAACTTTTTGAAAACACCTTTGAGATTATTTCCATATAAACAAAATCGACAAT
194 TGAAAACAAAATAAACCTTTTGAAAACACCTTTGAGATTATTTCCATATAAACAAAATCGACAAT
149868 CTTTGAATCTTTT
259 CTTTGAATCTTTT
149881 TAAAAACAAATTTTGTCTCATTTGAGAC-TATCTTAAAGCAAATTTTGTCTCGCTTGAGACATCA
1 TAAAAACAAATTTTGTCTCATTTGAGACATATCTTAAAGCAAATTTTGTCTCGCTTGAGACATCA
149945 TTTTCTCTCATAATACAAATTTCAA-G-GTTGTACTTAAAGCAAAATTAATATCACTTGAGATTT
66 TTTTCTCTCATAATACAAATTTCAAGGTGTTGTACTTAAAGCAAAATTAATATCACTTGAGATTT
150008 TCAAAGCTGATTTTGTCTCGCACGAGACAGTTTCCCCTTTAAACAAATCCTGAAATTGTTTCATT
131 TCAAAGCTGATTTTGTCTCGCACGAGAC-GTTTCCCCTTTAAACAAATCCTGAAATTGTTTCA-T
150073 TG-AAACAAAATAAACACTTTTGAAAACACCTTTGAGATTATTTCCATATAAACAAAATCGACAA
194 TGAAAACAAAATAAAC-CTTTTGAAAACACCTTTGAGATTATTTCCATATAAACAAAATCGACAA
150137 TCTTTGAATC-TTT
258 TCTTTGAATCTTTT
150150 T-AAAACAAAGTTTTGTCTC-TCTTGAGACA
1 TAAAAACAAA-TTTTGTCTCAT-TTGAGACA
150179 ATTTTGTGAA
Statistics
Matches: 291, Mismatches: 1, Indels: 15
0.95 0.00 0.05
Matches are distributed among these distances:
268 74 0.25
269 67 0.23
270 61 0.21
271 61 0.21
273 28 0.10
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (271 bp):
TAAAAACAAATTTTGTCTCATTTGAGACATATCTTAAAGCAAATTTTGTCTCGCTTGAGACATCA
TTTTCTCTCATAATACAAATTTCAAGGTGTTGTACTTAAAGCAAAATTAATATCACTTGAGATTT
TCAAAGCTGATTTTGTCTCGCACGAGACGTTTCCCCTTTAAACAAATCCTGAAATTGTTTCATTG
AAAACAAAATAAACCTTTTGAAAACACCTTTGAGATTATTTCCATATAAACAAAATCGACAATCT
TTGAATCTTTT
Found at i:150221 original size:27 final size:27
Alignment explanation
Indices: 150185--150271 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
150175 GACAATTTTG
150185 TGAAAAAATCTTTGAGAT-TGTTTCTTT
1 TGAAAAAATCTTTGAG-TCTGTTTCTTT
*
150212 TGAAAAAATCTTTGAGTCTATTTCTTT
1 TGAAAAAATCTTTGAGTCTGTTTCTTT
**
150239 TGAAACAAAAATTTGAGTCTGTTTCTTT
1 TGAAA-AAATCTTTGAGTCTGTTTCTTT
*
150267 GGAAA
1 TGAAA
150272 CAAAATTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.02
27 29 0.55
28 23 0.43
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (27 bp):
TGAAAAAATCTTTGAGTCTGTTTCTTT
Found at i:150263 original size:28 final size:28
Alignment explanation
Indices: 150195--150281 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
150185 TGAAAAAATC
**
150195 TTTGAGAT-TGTTTCTTTTGAAA-AAATC
1 TTTGAG-TCTGTTTCTTTTGAAACAAAAA
*
150222 TTTGAGTCTATTTCTTTTGAAACAAAAA
1 TTTGAGTCTGTTTCTTTTGAAACAAAAA
* *
150250 TTTGAGTCTGTTTCTTTGGAAACAAAAT
1 TTTGAGTCTGTTTCTTTTGAAACAAAAA
150278 TTTG
1 TTTG
150282 TCTCTCTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.02
27 19 0.37
28 32 0.62
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (28 bp):
TTTGAGTCTGTTTCTTTTGAAACAAAAA
Found at i:150301 original size:37 final size:37
Alignment explanation
Indices: 150260--150380 Score: 105
Period size: 37 Copynumber: 3.5 Consensus size: 37
150250 TTTGAGTCTG
150260 TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAA
1 TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAA
* * * * *
150297 TTTCTTTTGAAACAAAA------ATCT-TT-GGGTATG
1 TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA-A
*
150327 TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAT
1 TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAA
* *
150364 TTTCTTTTGAAAAAAAA
1 TTTCTTTGGAAACAAAA
150381 AAATCTTTGA
Statistics
Matches: 63, Mismatches: 12, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
29 3 0.05
30 18 0.29
31 3 0.05
36 3 0.05
37 33 0.52
38 3 0.05
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (37 bp):
TTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAA
Found at i:150301 original size:65 final size:66
Alignment explanation
Indices: 150231--150381 Score: 250
Period size: 67 Copynumber: 2.3 Consensus size: 66
150221 CTTTGAGTCT
*
150231 ATTTCTTTTGAAACAAAAA-TTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGAT
1 ATTTCTTTTGAAACAAAAACTTTGAGTATGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGAT
150295 A
66 A
*
150296 ATTTCTTTTGAAACAAAAATCTTTGGGTATGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGA
1 ATTTCTTTTGAAACAAAAA-CTTTGAGTATGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGA
150361 TA
65 TA
* *
150363 TTTTCTTTTGAAAAAAAAA
1 ATTTCTTTTGAAACAAAAA
150382 AATCTTTGAA
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
65 19 0.24
67 61 0.76
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (66 bp):
ATTTCTTTTGAAACAAAAACTTTGAGTATGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGAT
A
Found at i:151308 original size:64 final size:64
Alignment explanation
Indices: 151176--151315 Score: 176
Period size: 64 Copynumber: 2.2 Consensus size: 64
151166 ACAAAACAAA
*
151176 CATCTTTGAGATCAATTCCCTATAAACGAATTTTGTCTCATTTGAGACAGTTTCCCTTTAAACGT
1 CATCTTTGAG-TCAATTCCCTATAAACGAATTTTGTCTCATTTGAGACAGTTTCCCTTTAAACAT
** * * * *
151241 CATCTTTGAGTCGTTTCCCT-TAAAACGAATTTTGTCTCTTTTGAGACAG-TTGCTTTTAAAATA
1 CATCTTTGAGTCAATTCCCTAT-AAACGAATTTTGTCTCATTTGAGACAGTTTCCCTTT-AAACA
151304 T
64 T
151305 CATCTTTGAGT
1 CATCTTTGAGT
151316 TTATTTTTCT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
63 7 0.11
64 49 0.74
65 10 0.15
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (64 bp):
CATCTTTGAGTCAATTCCCTATAAACGAATTTTGTCTCATTTGAGACAGTTTCCCTTTAAACAT
Found at i:151377 original size:28 final size:28
Alignment explanation
Indices: 151306--151387 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
151296 TTAAAATATC
* * *
151306 ATCTTTGAGTTTATTTTTCTTGAAACAA
1 ATCTTTGAATTTGTTTCTCTTGAAACAA
** *
151334 ATCTTTGGGTTTGTTTCTTTTGAAACAA
1 ATCTTTGAATTTGTTTCTCTTGAAACAA
151362 ATCTTT-AATTTGGTTTCTCTTGAAAC
1 ATCTTTGAATTT-GTTTCTCTTGAAAC
151388 CATAACTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
27 3 0.07
28 43 0.93
ACGTcount: A:0.24, C:0.12, G:0.13, T:0.50
Consensus pattern (28 bp):
ATCTTTGAATTTGTTTCTCTTGAAACAA
Found at i:151639 original size:43 final size:42
Alignment explanation
Indices: 151406--151640 Score: 127
Period size: 40 Copynumber: 5.7 Consensus size: 42
151396 CTAAAGATGG
* * **
151406 CCAGCCGTCCTCATCATGTAGGAACCGTGTCATCCCCAG--A
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTCAACCATAGATA
* * * *
151446 CCAGATC-TCTTCATCACGTATGAGCCGTGTCAACCATAGATAA
1 CCAG-CCGTCCTCATCACGTAGGAACCGTGTCAACCATAGAT-A
* * *
151489 CCAGCCGT-C-C-TCACGTAGGAACCGTGTTATCACCTTTAGATGG
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTCA--ACC-ATAGAT-A
* * **
151532 CCAGCCG----CATCATGTAGGAACCGTGTCATCCCCAG--A
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTCAACCATAGATA
* * * * *
151568 CCAGATC-TCTTCATCACTTATGAGCCGTGTCAACCATAGATAA
1 CCAG-CCGTCCTCATCACGTAGGAACCGTGTCAACCATAGAT-A
151611 CCAGCCGTCCTCATCACGTAGGAACCGTGT
1 CCAGCCGTCCTCATCACGTAGGAACCGTGT
151641 TATCACCTTT
Statistics
Matches: 142, Mismatches: 35, Indels: 33
0.68 0.17 0.16
Matches are distributed among these distances:
36 4 0.03
37 1 0.01
39 2 0.01
40 68 0.48
41 3 0.02
42 22 0.15
43 42 0.30
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (42 bp):
CCAGCCGTCCTCATCACGTAGGAACCGTGTCAACCATAGATA
Found at i:151733 original size:125 final size:126
Alignment explanation
Indices: 151416--151769 Score: 501
Period size: 122 Copynumber: 2.8 Consensus size: 126
151406 CCAGCCGTCC
*
151416 TCATCATGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCAACC
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCAT-ACGTATGAGCCGTGTCAACC
*
151481 ATAGATAACCAGCCGT-C-C-TCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAG--CC
65 ATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGATCT
* * *
151538 GCATCATGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACTTATGAGCCGTGTCAACC
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCAT-ACGTATGAGCCGTGTCAACC
151603 ATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAATCT
65 ATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAG-ATCT
* * *
151666 TCATCACGTATGAGCCGTGTCATTCCCC-GACCAGATCTCTTCAT-CGTATGAGTCGTGTC-ACC
1 TCATCACGTAGGAACCGTGTCA-TCCCCAGACCAGATCTCTTCATACGTATGAGCCGTGTCAACC
* * * *
151728 CTAGATAACCAGTCG-CCTCATCACGTAGGAACTGAGTTATCA
65 ATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCA
151770 TCCACCCTTA
Statistics
Matches: 212, Mismatches: 13, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
122 79 0.37
123 1 0.00
124 26 0.12
125 53 0.25
126 13 0.06
128 35 0.17
129 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (126 bp):
TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATACGTATGAGCCGTGTCAACCA
TAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGATCT
Found at i:151821 original size:128 final size:125
Alignment explanation
Indices: 151400--151822 Score: 491
Period size: 122 Copynumber: 3.3 Consensus size: 125
151390 TAACTCCTAA
* * * * *
151400 AGATGGCCAGCCGTCCTCATCATGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGT
1 AGATGGCCAGAC-TCTTCATCACGTATGAGCCGTGTCATCCCCAGACCAGATCTCTTCAT-ACGT
* *
151465 ATGAGCCGTGTCAACCATAGATAACCAGC-CGTCCTCACGTAGGAACCGTGTTATCACCTTT
64 ATGAGCCGTGTCAACCATAGATAACCAGCGCCTCATCACGTAGGAACCGTGTTATCACCTTT
* * * * *
151526 AGATGGCCAG-C-C-GCATCATGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACTTA
1 AGATGGCCAGACTCTTCATCACGTATGAGCCGTGTCATCCCCAGACCAGATCTCTTCAT-ACGTA
151588 TGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTT
65 TGAGCCGTGTCAACCATAGATAACCAG-CG-CCTCATCACGTAGGAACCGTGTTATCACCTTT
*
151651 AGATGGCCAGAATCTTCATCACGTATGAGCCGTGTCATTCCCC-GACCAGATCTCTTCAT-CGTA
1 AGATGGCCAGACTCTTCATCACGTATGAGCCGTGTCA-TCCCCAGACCAGATCTCTTCATACGTA
* * * * *
151714 TGAGTCGTGTC-ACCCTAGATAACCAGTCGCCTCATCACGTAGGAACTGAGTTATCATCCACCCT
65 TGAGCCGTGTCAACCATAGATAACCAG-CGCCTCATCACGTAGGAACCGTG-T-T-AT-CACCTT
151778 T
125 T
* * * *
151779 AGACGACCAGACCTCTTCATCACGTATGAGCAGTGTCGTCCCCA
1 AGATGGCCAGA-CTCTTCATCACGTATGAGCCGTGTCATCCCCA
151823 CCAACACGCA
Statistics
Matches: 263, Mismatches: 21, Indels: 23
0.86 0.07 0.07
Matches are distributed among these distances:
122 75 0.29
123 2 0.01
124 19 0.07
125 58 0.22
126 24 0.09
127 3 0.01
128 54 0.21
129 28 0.11
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (125 bp):
AGATGGCCAGACTCTTCATCACGTATGAGCCGTGTCATCCCCAGACCAGATCTCTTCATACGTAT
GAGCCGTGTCAACCATAGATAACCAGCGCCTCATCACGTAGGAACCGTGTTATCACCTTT
Found at i:151974 original size:3 final size:3
Alignment explanation
Indices: 151961--152022 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
151951 CGGGTCTTTT
** **
151961 TTA TATA TTA TTA TTA TCG TTA TT- TTAA TTA TTA TTA TTA GCA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
152007 TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TT
152023 TACATATTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
2 4 0.09
3 38 0.81
4 5 0.11
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:152543 original size:8 final size:8
Alignment explanation
Indices: 152529--152562 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
152519 GTTACAGAAA
152529 AAAAAAAG
1 AAAAAAAG
*
152537 GAAAAAAG
1 AAAAAAAG
152545 AAAAAAAG
1 AAAAAAAG
152553 AAAAAAAG
1 AAAAAAAG
152561 AA
1 AA
152563 GAAGAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:152550 original size:15 final size:14
Alignment explanation
Indices: 152526--152571 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
152516 GGAGTTACAG
*
152526 AAAAAAAAAAGGAA
1 AAAAAAAAAAAGAA
152540 AAAAGAAAAAAAGAA
1 AAAA-AAAAAAAGAA
* *
152555 AAAAAGAAGAAGAA
1 AAAAAAAAAAAGAA
152569 AAA
1 AAA
152572 TCAGAGAGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:152564 original size:19 final size:18
Alignment explanation
Indices: 152524--152571 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 18
152514 AGGGAGTTAC
152524 AGAAAAAAAAAAGGAAAAA
1 AGAAAAAAAAAA-GAAAAA
152543 AGAAAAAAAGAAA-AAAAGA
1 AGAAAAAAA-AAAGAAAA-A
152562 AGAAGAAAAA
1 AGAA-AAAAA
152572 TCAGAGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 4 0.15
19 14 0.54
20 8 0.31
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAGAAAAA
Found at i:169586 original size:149 final size:148
Alignment explanation
Indices: 169300--169600 Score: 406
Period size: 149 Copynumber: 2.0 Consensus size: 148
169290 TAGATCGAGT
* * * * *
169300 AGCTAGAGGGAGCTATCTACCAAGGAGACGATCCAGATATTTGCCTACTGAGGTAACAAGTTGGA
1 AGCTAGAGGGAGCTACCTACCAAGAAGACAATCCAAACATTTGCCTACTGAGGTAACAAGTTGGA
* ** * *
169365 CTCGAGACAATTCAACGCTGAAGCCAACAGTTGAAGATCACGAACCAGCTTGAAATTTTTTTTGA
66 CTCGAGACAATTCAACGCTGAAGCCAACAGTTGAAGATCACGAACCAGCTCGAAAGATTTCTGGA
* *
169430 AGTAGGAGATGAAGTAGG
131 AGCAGGAGATGAAGTAGA
* *
169448 AGCTAGAGGGAGTTTACCTACCAAGAAGACAATCTAAACATTTGCCTACTGAGGTAACAAGTTGG
1 AGCTAGAGGGAG-CTACCTACCAAGAAGACAATCCAAACATTTGCCTACTGAGGTAACAAGTTGG
** * * *
169513 ACTCGAGATGATTCGACG-TCGAAGCCAACAGTTGAAGATTACGAGCCAGCTCGAAAGATTTCTG
65 ACTCGAGACAATTCAACGCT-GAAGCCAACAGTTGAAGATCACGAACCAGCTCGAAAGATTTCTG
169577 GAAGCAGGAGATGAAGTAGA
129 GAAGCAGGAGATGAAGTAGA
169597 AGCT
1 AGCT
169601 TTGAAGATGA
Statistics
Matches: 132, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
148 13 0.10
149 119 0.90
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (148 bp):
AGCTAGAGGGAGCTACCTACCAAGAAGACAATCCAAACATTTGCCTACTGAGGTAACAAGTTGGA
CTCGAGACAATTCAACGCTGAAGCCAACAGTTGAAGATCACGAACCAGCTCGAAAGATTTCTGGA
AGCAGGAGATGAAGTAGA
Found at i:170241 original size:27 final size:27
Alignment explanation
Indices: 170211--170273 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 27
170201 ATTATCAAAT
170211 GAGTTAAGGATTCTTTTAATTCTTTAA
1 GAGTTAAGGATTCTTTTAATTCTTTAA
*
170238 GAGTTAATAATGATTCTTTTAATTCTTTAA
1 GAG-T--TAAGGATTCTTTTAATTCTTTAA
170268 GAGTTA
1 GAGTTA
170274 TAGATTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 5 0.16
28 1 0.03
29 1 0.03
30 25 0.78
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (27 bp):
GAGTTAAGGATTCTTTTAATTCTTTAA
Found at i:171276 original size:48 final size:46
Alignment explanation
Indices: 171192--171350 Score: 202
Period size: 47 Copynumber: 3.5 Consensus size: 46
171182 TACCATTTTC
*
171192 CCATAAGC-CGTAAGCTTATTTTACCAAAATACTTACCATTTAAATT
1 CCATAAGCTCGTAAGCTTATTTTAACAAAATACTTACCATTT-AATT
*
171238 CCATAAGCTCATAAGCTTATTTTATACAAAATACTTACCATTTAA-T
1 CCATAAGCTCGTAAGCTTATTTTA-ACAAAATACTTACCATTTAATT
* *
171284 CTCATAAGCTCGTAAGCTTATTTT-ACACATATACTTGCCA-TT-ATT
1 C-CATAAGCTCGTAAGCTTATTTTAACA-AAATACTTACCATTTAATT
*
171329 CCAAAAGCTCGTAAGCTTATTT
1 CCATAAGCTCGTAAGCTTATTT
171351 GTATGCTTAC
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
44 21 0.21
45 7 0.07
46 20 0.20
47 37 0.36
48 17 0.17
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (46 bp):
CCATAAGCTCGTAAGCTTATTTTAACAAAATACTTACCATTTAATT
Found at i:171345 original size:91 final size:90
Alignment explanation
Indices: 171181--171350 Score: 229
Period size: 91 Copynumber: 1.9 Consensus size: 90
171171 ATAAAATCTT
*
171181 TTACCATTTTCCCATAAGCCGTAAGCTTATTTTACCAAAATACTTACCATTTAAATTCCATAAGC
1 TTACCATTTTCCCATAAGCCGTAAGCTTATTTTACCAAAATACTTACCATTT-AATTCCAAAAGC
171246 TCATAAGCTTATTTTATACAAAATAC
65 TCATAAGCTTATTTTATACAAAATAC
* * *
171272 TTACCATTTAATCTCATAAGCTCGTAAGCTTATTTTA-CACATATACTTGCCA-TT-ATTCCAAA
1 TTACCATTT--TCCCATAAGC-CGTAAGCTTATTTTACCA-AAATACTTACCATTTAATTCCAAA
*
171334 AGCTCGTAAGCTTATTT
62 AGCTCATAAGCTTATTT
171351 GTATGCTTAC
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
91 32 0.46
93 13 0.19
94 25 0.36
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.38
Consensus pattern (90 bp):
TTACCATTTTCCCATAAGCCGTAAGCTTATTTTACCAAAATACTTACCATTTAATTCCAAAAGCT
CATAAGCTTATTTTATACAAAATAC
Found at i:174184 original size:12 final size:13
Alignment explanation
Indices: 174167--174215 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
174157 CAAGGATAAA
174167 AGCAAA-AAAAAG
1 AGCAAAGAAAAAG
*
174179 AGCAAAGAAAAAA
1 AGCAAAGAAAAAG
*
174192 ATCAAAG-AAAA-
1 AGCAAAGAAAAAG
174203 A-CAAAGAAAAAG
1 AGCAAAGAAAAAG
174215 A
1 A
174216 ACAAGAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 5 0.16
11 5 0.16
12 11 0.34
13 11 0.34
ACGTcount: A:0.76, C:0.08, G:0.14, T:0.02
Consensus pattern (13 bp):
AGCAAAGAAAAAG
Found at i:174191 original size:14 final size:13
Alignment explanation
Indices: 174164--174203 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
174154 AACCAAGGAT
174164 AAAAGCAAA-AAA
1 AAAAGCAAAGAAA
*
174176 AAGAGCAAAGAAA
1 AAAAGCAAAGAAA
*
174189 AAAATCAAAGAAA
1 AAAAGCAAAGAAA
174202 AA
1 AA
174204 CAAAGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 8 0.33
13 16 0.67
ACGTcount: A:0.78, C:0.07, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAAGCAAAGAAA
Found at i:175205 original size:32 final size:32
Alignment explanation
Indices: 175163--175226 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
175153 AAGAAACGAT
*
175163 GAATGATGGGGCATCTTCGGAGATTCAACATC
1 GAATGATGGGGAATCTTCGGAGATTCAACATC
* * *
175195 GAATGTTGGGGAATCTTTGGGGATTCAACATC
1 GAATGATGGGGAATCTTCGGAGATTCAACATC
175227 CTGATATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (32 bp):
GAATGATGGGGAATCTTCGGAGATTCAACATC
Found at i:175414 original size:36 final size:36
Alignment explanation
Indices: 175374--175472 Score: 144
Period size: 37 Copynumber: 2.7 Consensus size: 36
175364 GTTTTACTCA
** *
175374 AGATAGTTTTTCTTAAAATAGATTTTATCTCCCTTG
1 AGATAGTTTCACTTAAAACAGATTTTATCTCCCTTG
* *
175410 AGATAGTTTCACTTAAAACATGTTTTTATCTCTCTTG
1 AGATAGTTTCACTTAAAACA-GATTTTATCTCCCTTG
175447 AGATAGTTTCACTTAAAACAGATTTT
1 AGATAGTTTCACTTAAAACAGATTTT
175473 TAAGGGTTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 22 0.39
37 34 0.61
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.44
Consensus pattern (36 bp):
AGATAGTTTCACTTAAAACAGATTTTATCTCCCTTG
Found at i:175580 original size:98 final size:98
Alignment explanation
Indices: 175467--175684 Score: 314
Period size: 98 Copynumber: 2.2 Consensus size: 98
175457 ACTTAAAACA
* * * * *
175467 GATTTTTAAGGGTTTCTTGATGAAGATTTTCAATGAATTTTTTAAATG-AAGTTAAGCCTAATTT
1 GATTTTCAAGGGTTTCTTGATGAAGATTTTCAAAG-AGTTTTTAAAAGAAAGCTAAGCCTAATTT
* * *
175531 TTAGGAGTTTCTTGACAACTAAGAAACTAAGCTT
65 TTAGGAGCTCCTTGACAAATAAGAAACTAAGCTT
* *
175565 GATTTTCAGGGGTTTCTTGATGATGATTTTCAAAGAGTTTTTAAAAGAAAGCTAAGCCTAATTTT
1 GATTTTCAAGGGTTTCTTGATGAAGATTTTCAAAGAGTTTTTAAAAGAAAGCTAAGCCTAATTTT
*
175630 TAGGGGCTCCTTGACAAATAAGAAACTAAGCTT
66 TAGGAGCTCCTTGACAAATAAGAAACTAAGCTT
175663 GATTTTCAAGGG-TTCTTGATGA
1 GATTTTCAAGGGTTTCTTGATGA
175685 GTAAGTCCTT
Statistics
Matches: 107, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
97 20 0.19
98 87 0.81
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (98 bp):
GATTTTCAAGGGTTTCTTGATGAAGATTTTCAAAGAGTTTTTAAAAGAAAGCTAAGCCTAATTTT
TAGGAGCTCCTTGACAAATAAGAAACTAAGCTT
Found at i:175792 original size:41 final size:41
Alignment explanation
Indices: 175679--175792 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 41
175669 CAAGGGTTCT
* *
175679 TGATGAGTAAGTCCTTTGGGTCAT-CAGTAAGTCTTTCGAACG
1 TGATGA-TAAGTCCTTTGGGCCATCCA-TAAGTCTTTCGAACA
* * * * *
175721 TGATGCGTAAATCCTTCGGGCCATCTATAAGTCTTTCGAGCA
1 TGATG-ATAAGTCCTTTGGGCCATCCATAAGTCTTTCGAACA
175763 TGATGATAAGTCCTTTGGGCCATCCATAAG
1 TGATGATAAGTCCTTTGGGCCATCCATAAG
175793 ACCCTCGGGC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
41 21 0.36
42 37 0.63
43 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (41 bp):
TGATGATAAGTCCTTTGGGCCATCCATAAGTCTTTCGAACA
Found at i:175925 original size:20 final size:20
Alignment explanation
Indices: 175900--175977 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
175890 TTTCTTGATG
*
175900 AGTAAGTCCTTCGGGCCATC
1 AGTAAGACCTTCGGGCCATC
* * ** *
175920 AGTAAGTCTTTCGAGCGTGATG
1 AGTAAGACCTTCG-G-GCCATC
*
175942 TGTAAGACCTTCGGGCCATC
1 AGTAAGACCTTCGGGCCATC
*
175962 AATAAGACCTTCGGGC
1 AGTAAGACCTTCGGGC
175978 AGGGATTTTT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 29 0.66
21 2 0.05
22 13 0.30
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (20 bp):
AGTAAGACCTTCGGGCCATC
Found at i:176337 original size:17 final size:18
Alignment explanation
Indices: 176282--176337 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
176272 TTGAGACAAC
176282 TTCTCTTGAAACAAAGTT
1 TTCTCTTGAAACAAAGTT
*
176300 TGTCTCTCTTAAGAC--AGTT
1 T-TCTCT-TGAA-ACAAAGTT
176319 TT-TCTTGAAACAAAGTT
1 TTCTCTTGAAACAAAGTT
176336 TT
1 TT
176338 GTTCCTCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
15 2 0.06
16 3 0.10
17 9 0.29
18 2 0.06
19 10 0.32
20 3 0.10
21 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (18 bp):
TTCTCTTGAAACAAAGTT
Found at i:176352 original size:37 final size:36
Alignment explanation
Indices: 176247--176369 Score: 151
Period size: 36 Copynumber: 3.4 Consensus size: 36
176237 CCCGAGTCTG
* **
176247 TTTCTTTGAAAC-AAGTTTGTCTCACTTGAGACAACT
1 TTTC-TTGAAACAAAGTTTGTCTCTCTTGAGACAGTT
* *
176283 TCTCTTGAAACAAAGTTTGTCTCTCTTAAGACAGTT
1 TTTCTTGAAACAAAGTTTGTCTCTCTTGAGACAGTT
176319 TTTCTTGAAACAAAGTTTTGT-TCCTCTTGAGACAGTT
1 TTTCTTGAAACAAAG-TTTGTCT-CTCTTGAGACAGTT
*
176356 TTCCTTGAAACAAA
1 TTTCTTGAAACAAA
176370 ATCTTTGAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
35 7 0.09
36 38 0.50
37 31 0.41
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (36 bp):
TTTCTTGAAACAAAGTTTGTCTCTCTTGAGACAGTT
Found at i:176461 original size:66 final size:65
Alignment explanation
Indices: 176322--176499 Score: 220
Period size: 66 Copynumber: 2.7 Consensus size: 65
176312 GACAGTTTTT
* * *
176322 CTTGAAACAAAGTTTTGT-TCCTCTTGAGACAGTTTTCCTTGAAACAAAATCTTTGAATCTGTTT
1 CTTGAAAC-AAGTTTTGTCT-CTCTTGAGACAGTTTTCCTTGAAACAAAACCGTTGAATCTATTT
176386 CC
64 CC
* * *
176388 CTTGAAACATGTTTTGTCTCTCTTGAGACAG-CTTCCTTTGAAACACCAACCGTTGAGATC-ATT
1 CTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTTCC-TTGAAACA-AAACCGTTGA-ATCTATT
176451 TCC
63 TCC
176454 CTTGAAACGAA-TTTTGTCTCTCTTGAGACAGTTTTCCTTGAAACAA
1 CTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTTCCTTGAAACAA
176500 GAAATTTTAT
Statistics
Matches: 97, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
64 4 0.04
65 28 0.29
66 57 0.59
67 8 0.08
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (65 bp):
CTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTTCCTTGAAACAAAACCGTTGAATCTATTTCC
Found at i:176713 original size:150 final size:150
Alignment explanation
Indices: 176469--176745 Score: 416
Period size: 150 Copynumber: 1.8 Consensus size: 150
176459 AACGAATTTT
* *
176469 GTCTCTCTTGAGACAGTTTTCCTTGAAACAAGAAATTTTATCTTACTTGAGATGGTTTTTCTTAA
1 GTCTCGCTTAAGACAGTTTTCCTTGAAACAAGAAATTTTATCTTACTTGAGATGGTTTTTCTTAA
* **
176534 AATCAGTTTCGTCTCAGTAGAGACAGTTT-CCTCTGAAATAAGAAATTTTATCTCACTCGAGATG
66 AACCAACTTCGTCTCAGTAGAGACAGTTTCCCT-TGAAATAAGAAATTTTATCTCACTCGAGATG
176598 GTTTTTCTTAAAACCAACTTC
130 GTTTTTCTTAAAACCAACTTC
* *
176619 GTCTCGCTTAAGACAG-TTTCTGTTGAAACAATAAATTTTATCTTACTTGAGATGGTTTTTCTTA
1 GTCTCGCTTAAGACAGTTTTC-CTTGAAACAAGAAATTTTATCTTACTTGAGATGGTTTTTCTTA
* * *
176683 AAACCAACTTCGTCTC-GCTTGAGATAGTTTCCCTTGAAATAAGAAATTTTATCTCACTTGAGA
65 AAACCAACTTCGTCTCAG-TAGAGACAGTTTCCCTTGAAATAAGAAATTTTATCTCACTCGAGA
176746 GAGCTTATCT
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
149 5 0.04
150 106 0.93
151 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (150 bp):
GTCTCGCTTAAGACAGTTTTCCTTGAAACAAGAAATTTTATCTTACTTGAGATGGTTTTTCTTAA
AACCAACTTCGTCTCAGTAGAGACAGTTTCCCTTGAAATAAGAAATTTTATCTCACTCGAGATGG
TTTTTCTTAAAACCAACTTC
Found at i:176761 original size:75 final size:75
Alignment explanation
Indices: 176469--176745 Score: 378
Period size: 75 Copynumber: 3.7 Consensus size: 75
176459 AACGAATTTT
* * *
176469 GTCTCTCTTGAGACAGTTTTCCTTGAAACAAGAAATTTTATCTTACTTGAGATGGTTTTTCTTAA
1 GTCTCGCTTGAGACAGTTTCCCTTGAAACAAGAAATTTTATCTCACTTGAGATGGTTTTTCTTAA
* **
176534 AATCAGTTTC
66 AACCAACTTC
* * *
176544 GTCTCAG-TAGAGACAGTTT-CCTCTGAAATAAGAAATTTTATCTCACTCGAGATGGTTTTTCTT
1 GTCTC-GCTTGAGACAGTTTCCCT-TGAAACAAGAAATTTTATCTCACTTGAGATGGTTTTTCTT
176607 AAAACCAACTTC
64 AAAACCAACTTC
* ** * *
176619 GTCTCGCTTAAGACAGTTTCTGTTGAAACAATAAATTTTATCTTACTTGAGATGGTTTTTCTTAA
1 GTCTCGCTTGAGACAGTTTCCCTTGAAACAAGAAATTTTATCTCACTTGAGATGGTTTTTCTTAA
176684 AACCAACTTC
66 AACCAACTTC
* *
176694 GTCTCGCTTGAGATAGTTTCCCTTGAAATAAGAAATTTTATCTCACTTGAGA
1 GTCTCGCTTGAGACAGTTTCCCTTGAAACAAGAAATTTTATCTCACTTGAGA
176746 GAGCTTATCT
Statistics
Matches: 175, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
74 4 0.02
75 170 0.97
76 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (75 bp):
GTCTCGCTTGAGACAGTTTCCCTTGAAACAAGAAATTTTATCTCACTTGAGATGGTTTTTCTTAA
AACCAACTTC
Found at i:177273 original size:134 final size:133
Alignment explanation
Indices: 177031--177289 Score: 369
Period size: 134 Copynumber: 1.9 Consensus size: 133
177021 CAACATTTCT
*
177031 AATGGAGAGTTCATAATGAGAAAAACTCATCCGACAGAGAGAGAAGTTCATAATGAAAAGAACTT
1 AATGGAGAGTTCATAATGAGAAAAACTCATCCGAAAGAGAGAGAAGTTCATAATGAAAAGAACTT
* * * *
177096 GTTGGACCTATCGCTCGATTCACAACATTTCAAATCAGCGATGCCTTG-TTGAGGGATTAACACT
66 GTTCGACCTATCACTCGATTCACAACATGTCAAATCAGCGATGCCTCGCTTGAGGGATTAACACT
177160 TTA
131 TTA
* * *
177163 AATGGAGAGTTCATAATGAGAAGAACTCATCC-AAAGAGGGAGAAGAAGTTCATAATGAGAAGAG
1 AATGGAGAGTTCATAATGAGAAAAACTCATCCGAAAGA--GAG-AGAAGTTCATAATGAAAAGAA
* * * *
177227 CTTGTTCGACCTATTACTCGATTCACGACATGTCGAATCAGTGATGCCTCGCTTGAGGGATTA
63 CTTGTTCGACCTATCACTCGATTCACAACATGTCAAATCAGCGATGCCTCGCTTGAGGGATTA
177290 TCATGGAGAG
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.04
132 31 0.28
133 3 0.03
134 62 0.56
135 11 0.10
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (133 bp):
AATGGAGAGTTCATAATGAGAAAAACTCATCCGAAAGAGAGAGAAGTTCATAATGAAAAGAACTT
GTTCGACCTATCACTCGATTCACAACATGTCAAATCAGCGATGCCTCGCTTGAGGGATTAACACT
TTA
Found at i:177470 original size:89 final size:88
Alignment explanation
Indices: 177293--177532 Score: 297
Period size: 89 Copynumber: 2.7 Consensus size: 88
177283 GGGATTATCA
* * * * *
177293 TGGAGAGTTCATATTGAGAATAAATCATCAAACAAGGAAG--AAGTTCATAATGAGAATAACTTG
1 TGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGAAGAAAAGTTCATAATGAGAAGAAC-TG
* *
177356 TTTAACCTTGCATCAACATTTCAG
65 TTTAACCCTGCATCAACATTCCAG
*
177380 TGGAGAGTTCATAATGAGAA-AACTCATCCAACGAGGAAGAAAAAGTTCATAATGAGAAGAACTG
1 TGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGAAG-AAAAGTTCATAATGAGAAGAACTG
* * ** *
177444 TTTGACCCTGCCTTGACGTTACCAG
65 TTTAACCCTGCATCAACATT-CCAG
*
177469 TGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGAAGAAGAAGATCATAATGAGAAGAACT
1 TGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGAAGAA-AAGTTCATAATGAGAAGAACT
177533 TGCTCGACTT
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
86 16 0.12
87 19 0.14
88 16 0.12
89 44 0.33
90 38 0.29
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (88 bp):
TGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGAAGAAAAGTTCATAATGAGAAGAACTGT
TTAACCCTGCATCAACATTCCAG
Found at i:178878 original size:17 final size:16
Alignment explanation
Indices: 178844--178904 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
178834 AAGTCCATGA
178844 ATGTTTTAATT-TTCTTT
1 ATGTTTT-ATTATT-TTT
178861 ATGTTTTAGTTATTTTT
1 ATGTTTTA-TTATTTTT
*
178878 ATTATTTTATTATATTTT
1 A-TGTTTTATTAT-TTTT
178896 AT-TTTTATT
1 ATGTTTTATT
178905 TAGTTTATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
16 8 0.21
17 18 0.46
18 13 0.33
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (16 bp):
ATGTTTTATTATTTTT
Found at i:178895 original size:18 final size:18
Alignment explanation
Indices: 178864--178898 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
178854 TTTCTTTATG
178864 TTTTAGTTATTTTTATTA
1 TTTTAGTTATTTTTATTA
178882 TTTTA-TTATATTTTATT
1 TTTTAGTTAT-TTTTATT
178899 TTTATTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTAGTTATTTTTATTA
Found at i:180111 original size:16 final size:15
Alignment explanation
Indices: 180087--180160 Score: 68
Period size: 16 Copynumber: 5.0 Consensus size: 15
180077 CTAGTTTGCA
180087 TATTATTATTATTAC
1 TATTATTATTATTAC
180102 TATATATTA-TAGTATAC
1 TAT-TATTATTA-T-TAC
180119 TATTATTTATTATTAC
1 TATTA-TTATTATTAC
*
180135 AATTATTA-TA-TA-
1 TATTATTATTATTAC
180147 TATT-TTATTATTAC
1 TATTATTATTATTAC
180161 AAATAACAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
11 3 0.06
12 5 0.10
13 4 0.08
14 2 0.04
15 8 0.16
16 15 0.31
17 10 0.20
18 2 0.04
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.57
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:180132 original size:10 final size:10
Alignment explanation
Indices: 180086--180159 Score: 61
Period size: 9 Copynumber: 7.9 Consensus size: 10
180076 CCTAGTTTGC
180086 ATATTATTAT
1 ATATTATTAT
*
180096 -TATTACTAT
1 ATATTATTAT
180105 ATATTA-TAGT
1 ATATTATTA-T
*
180115 ATACTATTAT
1 ATATTATTAT
* *
180125 TTATTATTAC
1 ATATTATTAT
180135 A-ATTATTAT
1 ATATTATTAT
180144 ATA-TATT-T
1 ATATTATTAT
180152 -TATTATTA
1 ATATTATTA
180160 CAAATAACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
7 2 0.04
8 5 0.10
9 22 0.43
10 20 0.39
11 2 0.04
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (10 bp):
ATATTATTAT
Found at i:185962 original size:20 final size:20
Alignment explanation
Indices: 185929--186001 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
185919 GCAGCCTTCG
*
185929 TGCATGGATGCACAACAGGA
1 TGCATCGATGCACAACAGGA
*
185949 TGCATCGATACACAACAGGA
1 TGCATCGATGCACAACAGGA
* *
185969 TGCATCAATGCACATCAGGA
1 TGCATCGATGCACAACAGGA
185989 TGCATCGATGCAC
1 TGCATCGATGCAC
186002 TAAGTGCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (20 bp):
TGCATCGATGCACAACAGGA
Found at i:187086 original size:1 final size:1
Alignment explanation
Indices: 187080--187154 Score: 51
Period size: 1 Copynumber: 75.0 Consensus size: 1
187070 TCCATCAGAG
* * * * * * * * *
187080 AAAAAAAGAAAAAGAGAAAAAAGAGAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
187145 GAAAAGAAAA
1 AAAAAAAAAA
187155 GAAATTGAAT
Statistics
Matches: 52, Mismatches: 22, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (1 bp):
A
Done.