Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9158330
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 28 of 35
Found at i:6749327 original size:18 final size:19
Alignment explanation
Indices: 6749288--6749343 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
6749278 GAAACCCCTT
6749288 TGAAAATACATGATTTTTTAA
1 TGAAAATACATGA--TTTTAA
6749309 TGAAAATACATGA-TTTAA
1 TGAAAATACATGATTTTAA
* *
6749327 TGAAAGTACATGCTTTT
1 TGAAAATACATGATTTT
6749344 GGCCGAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 16 0.50
19 3 0.09
21 13 0.41
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (19 bp):
TGAAAATACATGATTTTAA
Found at i:6751088 original size:23 final size:26
Alignment explanation
Indices: 6751031--6751090 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 26
6751021 TTCTTTTTCT
6751031 TTTC-ATTTTCTTCCTTTTTGAGTCC
1 TTTCAATTTTCTTCCTTTTTGAGTCC
*
6751056 TTTCAA-TTTCTT-C-TTTTGAGTGC
1 TTTCAATTTTCTTCCTTTTTGAGTCC
6751079 TTT-AATTTTCTT
1 TTTCAATTTTCTT
6751091 TGCTGGATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 2 0.06
23 18 0.56
24 1 0.03
25 10 0.31
26 1 0.03
ACGTcount: A:0.12, C:0.18, G:0.08, T:0.62
Consensus pattern (26 bp):
TTTCAATTTTCTTCCTTTTTGAGTCC
Found at i:6751732 original size:14 final size:11
Alignment explanation
Indices: 6751699--6751731 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
6751689 AAAGTAGTAT
6751699 CTCAAAGAAGA
1 CTCAAAGAAGA
6751710 CTCAAAGAAGA
1 CTCAAAGAAGA
6751721 CTCAAAGAAGA
1 CTCAAAGAAGA
6751732 ACCAATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.18, T:0.09
Consensus pattern (11 bp):
CTCAAAGAAGA
Found at i:6771538 original size:28 final size:27
Alignment explanation
Indices: 6771484--6771541 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
6771474 TTTCCTTACA
* * *
6771484 TTTCTTCTTTTTGAGTGCTGGATTTTC
1 TTTCTTCTTTTGGAGTGCTGCAATTTC
*
6771511 TTTCTGTCTTTTGGAGTGCTTCAATTTC
1 TTTCT-TCTTTTGGAGTGCTGCAATTTC
6771539 TTT
1 TTT
6771542 TCTGAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.09, C:0.16, G:0.17, T:0.59
Consensus pattern (27 bp):
TTTCTTCTTTTGGAGTGCTGCAATTTC
Found at i:6773305 original size:23 final size:23
Alignment explanation
Indices: 6773279--6773343 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
6773269 AGATGATTGA
6773279 AAAATCATTACTTTTGGAGAACT
1 AAAATCATTACTTTTGGAGAACT
* *
6773302 AAAA-GATGTAACTTTTGAAGAACT
1 AAAATCAT-T-ACTTTTGGAGAACT
* *
6773326 AATAGTCATGACTTTTGG
1 AA-AATCATTACTTTTGG
6773344 TGATCGACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
22 2 0.06
23 5 0.16
24 22 0.69
25 1 0.03
26 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (23 bp):
AAAATCATTACTTTTGGAGAACT
Found at i:6774467 original size:311 final size:302
Alignment explanation
Indices: 6773915--6774529 Score: 1117
Period size: 311 Copynumber: 2.0 Consensus size: 302
6773905 AGTGTAAAGG
6773915 CTCAAGTTCAACCCTTAACATCCTCTATATCTCACAAATAATGGTATGCATTTGCAGGTTTGGTG
1 CTCAAGTTCAACCCTTAACATCCTCTATATCTCACAAATAATGGTATGCATTTGCAGGTTTGGTG
6773980 GTCACCCGATTACTATCACTAGAACCTGTCATATTAATAAAAACAAGACAACAGAAAAATAATTA
66 GTCACCCGATTACTATCACTAGAACCTGTCATATTAATAAAAACAAGACAACAGAAAAATAATTA
6774045 ATGTATAGGACTCACAACACACACATAAAGATTCTAACATATCGCTCTAAAGAAATCAAAATTGG
131 ATGTATAGGACTCACAACACACACATAAAGATTCTAACATATCGCTCTAAAGAAATCAAAATTGG
6774110 CACTCAATCACTCAACACACGTGTTTCAATTGGGAGAAACTTTTAATGGCTCTTTTCTGTCTCCC
196 CACTCAATCACTCAACACACGTGTTTCAATTGGGAGAAACTTTTAATGGCTCTTTTCTGTCTCCC
6774175 C-T-TGATCTCACACGCTCAATATGCCTTTTCCACTCATTCC
261 CTTCTGATCTCACACGCTCAATATGCCTTTTCCACTCATTCC
6774215 CTCAAGTTCAACCCTTAACATCCTCTATATCTCACAAATAATGGTATGCATTTGCAGGTTTGGTG
1 CTCAAGTTCAACCCTTAACATCCTCTATATCTCACAAATAATGGTATGCATTTGCAGG-TT--TG
6774280 GTTGGTCACCCGGATTACTATCACTAGAACCTGTCATATTAATAAAAAAACAAGACAACAGAAAA
63 G-TGGTCACCC-GATTACTATCACTAGAACCTGTCATATTAAT--AAAAACAAGACAACAGAAAA
6774345 ATAATTAATGTATATAGGACCTCACAACACACACATAAAGATTCTAACAATATCGCTCTAAAGAA
124 ATAATTAATG--TATAGGA-CTCACAACACACACATAAAGATTCTAAC-ATATCGCTCTAAAGAA
6774410 ATCAAAATTGGCACTCAATCACTCAACACACGTGTTTCAATTGGGAGAAACTTTTAATGGCTCTT
185 ATCAAAATTGGCACTCAATCACTCAACACACGTGTTTCAATTGGGAGAAACTTTTAATGGCTCTT
6774475 TTCTGTCTCCCCTTCTGATCTCACACGCTCAATATGCCTTTTCCACTCATTCC
250 TTCTGTCTCCCCTTCTGATCTCACACGCTCAATATGCCTTTTCCACTCATTCC
6774528 CT
1 CT
6774530 TGTAATCAGA
Statistics
Matches: 302, Mismatches: 0, Indels: 13
0.96 0.00 0.04
Matches are distributed among these distances:
300 58 0.19
301 2 0.01
303 3 0.01
304 9 0.03
305 31 0.10
307 30 0.10
309 7 0.02
310 28 0.09
311 93 0.31
312 1 0.00
313 40 0.13
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (302 bp):
CTCAAGTTCAACCCTTAACATCCTCTATATCTCACAAATAATGGTATGCATTTGCAGGTTTGGTG
GTCACCCGATTACTATCACTAGAACCTGTCATATTAATAAAAACAAGACAACAGAAAAATAATTA
ATGTATAGGACTCACAACACACACATAAAGATTCTAACATATCGCTCTAAAGAAATCAAAATTGG
CACTCAATCACTCAACACACGTGTTTCAATTGGGAGAAACTTTTAATGGCTCTTTTCTGTCTCCC
CTTCTGATCTCACACGCTCAATATGCCTTTTCCACTCATTCC
Found at i:6775755 original size:20 final size:18
Alignment explanation
Indices: 6775713--6775759 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 18
6775703 TCGCCAAGAG
*
6775713 CATGTATCTCATTAAAAT
1 CATGTATTTCATTAAAAT
6775731 CATGTATTTCATTTAAAAGT
1 CATGTATTTCA-TTAAAA-T
6775751 CATGTATTT
1 CATGTATTT
6775760 TCAAAGGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.38
19 6 0.23
20 10 0.38
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (18 bp):
CATGTATTTCATTAAAAT
Found at i:6777463 original size:15 final size:16
Alignment explanation
Indices: 6777443--6777484 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
6777433 GATTAGAATA
6777443 AAATAAATAAAAGAT-
1 AAATAAATAAAAGATG
*
6777458 AAATAAATGAAAGATG
1 AAATAAATAAAAGATG
6777474 AAATAAGATAA
1 AAATAA-ATAA
6777485 TAAAAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 14 0.61
16 6 0.26
17 3 0.13
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (16 bp):
AAATAAATAAAAGATG
Found at i:6779742 original size:36 final size:36
Alignment explanation
Indices: 6779656--6779784 Score: 147
Period size: 36 Copynumber: 3.7 Consensus size: 36
6779646 ATGGTGATGA
* * * *
6779656 AATGGTAATGGAA-A-GATGATGTTATTGGCGTGAT
1 AATGGTGATGGAATATGGTGATGATATAGGCGTGAT
* *
6779690 -ATGGTGATGTAATATGGTGATGATATAGGCATGAT
1 AATGGTGATGGAATATGGTGATGATATAGGCGTGAT
* *
6779725 AATGGTGATGGACTATGGTGATGATATAGGCGCGAT
1 AATGGTGATGGAATATGGTGATGATATAGGCGTGAT
* *
6779761 AATGGAGATGGATTATGGTGATGA
1 AATGGTGATGGAATATGGTGATGA
6779785 AAATAGTATC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
33 10 0.12
34 1 0.01
35 16 0.20
36 53 0.66
ACGTcount: A:0.31, C:0.04, G:0.34, T:0.31
Consensus pattern (36 bp):
AATGGTGATGGAATATGGTGATGATATAGGCGTGAT
Found at i:6784409 original size:22 final size:22
Alignment explanation
Indices: 6784382--6784423 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6784372 TCCATTTTAA
6784382 CATCAACACCATCAACATCCTC
1 CATCAACACCATCAACATCCTC
* *
6784404 CATCAAGACCATCATCATCC
1 CATCAACACCATCAACATCC
6784424 ACTTAATTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.43, G:0.02, T:0.19
Consensus pattern (22 bp):
CATCAACACCATCAACATCCTC
Found at i:6787715 original size:140 final size:140
Alignment explanation
Indices: 6787536--6787819 Score: 559
Period size: 140 Copynumber: 2.0 Consensus size: 140
6787526 AATACCTTGG
6787536 TTAGCAAAGGATATGTTAATCATAGATAACTTCAAAGGATACTTCTTATTCATCTCTTTATGTGA
1 TTAGCAAAGGATATGTTAATCATAGATAACTTCAAAGGATACTTCTTATTCATCTCTTTATGTGA
*
6787601 AAAGACATCTATCCATTTGACTTCTTCCTGGTGTTAATTTGAAGCATCGCATCAATTGGAGTAGG
66 AAAGACATCTATCCATTTGACTTCTTCCTGGTGTTAATTTGAAGCACCGCATCAATTGGAGTAGG
6787666 AATATATCTT
131 AATATATCTT
6787676 TTAGCAAAGGATATGTTAATCATAGATAACTTCAAAGGATACTTCTTATTCATCTCTTTATGTGA
1 TTAGCAAAGGATATGTTAATCATAGATAACTTCAAAGGATACTTCTTATTCATCTCTTTATGTGA
6787741 AAAGACATCTATCCATTTGACTTCTTCCTGGTGTTAATTTGAAGCACCGCATCAATTGGAGTAGG
66 AAAGACATCTATCCATTTGACTTCTTCCTGGTGTTAATTTGAAGCACCGCATCAATTGGAGTAGG
6787806 AATATATCTT
131 AATATATCTT
6787816 TTAG
1 TTAG
6787820 TTCAAAACAC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 143 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (140 bp):
TTAGCAAAGGATATGTTAATCATAGATAACTTCAAAGGATACTTCTTATTCATCTCTTTATGTGA
AAAGACATCTATCCATTTGACTTCTTCCTGGTGTTAATTTGAAGCACCGCATCAATTGGAGTAGG
AATATATCTT
Found at i:6788144 original size:256 final size:258
Alignment explanation
Indices: 6787643--6788156 Score: 1005
Period size: 256 Copynumber: 2.0 Consensus size: 258
6787633 GTTAATTTGA
6787643 AGCATCGCATCAATTGGAGTAGGAATATATCTTTTAGCAAAGGATATGTTAATCATAGATAACTT
1 AGCATCGCATCAATTGGAGTAGGAATATATCTTTTAGCAAAGGATATGTTAATCATAGATAACTT
6787708 CAAAGGATACTTCTTATTCATCTCTTTATGTGAAAAGACATCTATCCATTTGACTTCTTCCTGGT
66 CAAAGGATACTTCTTATTCATCTCTTTATGTGAAAAGACATCTATCCATTTGACTTCTTCCTGGT
6787773 GTTAATTTGAAGCACCGCATCAATTGGAGTAGGAATATATCTTTTAGTTCAAAACACCATGTTCT
131 GTTAATTTGAAGCACCGCATCAATTGGAGTAGGAATATATCTTTTAGTTCAAAACACCATGTTCT
*
6787838 TTGGAAAAGGTACGTAACTCTTTATCTCTACTCCTCGAACCATCATGGTGGTTTGTGAGGAGT
196 TTGGAAAAGGTACGTAACTCTTTATCTCTACTCCTCAAACCATCATGGTGGTTTGTGAGGAGT
6787901 AGCATCGCATCAATTGGAGTAGGAATATATCTTTTAGCAAAGGATATGTTAATCATAGATAACTT
1 AGCATCGCATCAATTGGAGTAGGAATATATCTTTTAGCAAAGGATATGTTAATCATAGATAACTT
6787966 CAAAGGATACTTCTTATTCATCTCTTTATGTGAAAAGACATCTATCCATTTGAC-TCTT-CTGGT
66 CAAAGGATACTTCTTATTCATCTCTTTATGTGAAAAGACATCTATCCATTTGACTTCTTCCTGGT
6788029 GTTAATTTGAAGCACCGCATCAATTGGAGTAGGAATATATCTTTTAGTTCAAAACACCATGTTCT
131 GTTAATTTGAAGCACCGCATCAATTGGAGTAGGAATATATCTTTTAGTTCAAAACACCATGTTCT
6788094 TTGGAAAAGGTACGTAACTCTTTATCTCTACTCCTCAAACCATCATGGTGGTTTGTGAGGAGT
196 TTGGAAAAGGTACGTAACTCTTTATCTCTACTCCTCAAACCATCATGGTGGTTTGTGAGGAGT
6788157 CTTAACCTTT
Statistics
Matches: 255, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
256 132 0.52
257 4 0.02
258 119 0.47
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (258 bp):
AGCATCGCATCAATTGGAGTAGGAATATATCTTTTAGCAAAGGATATGTTAATCATAGATAACTT
CAAAGGATACTTCTTATTCATCTCTTTATGTGAAAAGACATCTATCCATTTGACTTCTTCCTGGT
GTTAATTTGAAGCACCGCATCAATTGGAGTAGGAATATATCTTTTAGTTCAAAACACCATGTTCT
TTGGAAAAGGTACGTAACTCTTTATCTCTACTCCTCAAACCATCATGGTGGTTTGTGAGGAGT
Found at i:6792703 original size:14 final size:14
Alignment explanation
Indices: 6792674--6792712 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
6792664 ATAGGCGTGA
*
6792674 ATGGTTATGG-AAG
1 ATGGTGATGGAAAG
6792687 ATGGTGATGGAAAG
1 ATGGTGATGGAAAG
6792701 ATGGTGATGGAA
1 ATGGTGATGGAA
6792713 TGATAGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.33, C:0.00, G:0.41, T:0.26
Consensus pattern (14 bp):
ATGGTGATGGAAAG
Found at i:6793968 original size:30 final size:31
Alignment explanation
Indices: 6793916--6793975 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
6793906 CTTAGCTTTA
**
6793916 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACATATCATTTAGATATCATT
* *
6793946 TATTATGTTTGCATTTCATTTAGATATCAT
1 TATTATGTTTACATATCATTTAGATATCAT
6793976 GGCAGCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.55
Consensus pattern (31 bp):
TATTATGTTTACATATCATTTAGATATCATT
Found at i:6794493 original size:10 final size:10
Alignment explanation
Indices: 6794480--6794518 Score: 60
Period size: 10 Copynumber: 3.7 Consensus size: 10
6794470 TGGACTAAAG
6794480 GTAGCTGGAA
1 GTAGCTGGAA
6794490 GTAGCTGGAA
1 GTAGCTGGAA
6794500 GTAGCTGGGAGA
1 GTAGCT-GGA-A
6794512 GTAGCTG
1 GTAGCTG
6794519 AGGAGCTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 16 0.59
11 4 0.15
12 7 0.26
ACGTcount: A:0.26, C:0.10, G:0.44, T:0.21
Consensus pattern (10 bp):
GTAGCTGGAA
Found at i:6794920 original size:18 final size:19
Alignment explanation
Indices: 6794885--6794920 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6794875 CGGCCAAGAG
*
6794885 CATGTATCTTCATTAAAAT
1 CATGTATCTTCATCAAAAT
6794904 CATGTAT-TTCATCAAAA
1 CATGTATCTTCATCAAAA
6794921 AAATCATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (19 bp):
CATGTATCTTCATCAAAAT
Found at i:6794937 original size:19 final size:19
Alignment explanation
Indices: 6794885--6794938 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
6794875 CGGCCAAGAG
* **
6794885 CATGTATCTTCATTAAAAT
1 CATGTATTTTCAAAAAAAT
6794904 CATGTATTTCATCAAAAAAAT
1 CATGTATTT--TCAAAAAAAT
6794925 CATGTATTTTCAAA
1 CATGTATTTTCAAA
6794939 GGGGTTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.43
21 17 0.57
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (19 bp):
CATGTATTTTCAAAAAAAT
Found at i:6802149 original size:12 final size:12
Alignment explanation
Indices: 6802134--6802171 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
6802124 TGAATTCTTT
6802134 TTCTTTCTTTTC
1 TTCTTTCTTTTC
6802146 TTCTTTCTTTTC
1 TTCTTTCTTTTC
*
6802158 TTTTCTTCTTTTC
1 TTCT-TTCTTTTC
6802171 T
1 T
6802172 GATTTTTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTCTTTCTTTTC
Found at i:6802151 original size:8 final size:8
Alignment explanation
Indices: 6802132--6802171 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
6802122 TTTGAATTCT
6802132 TTTTCTTTC
1 TTTTC-TTC
6802141 TTTTCTTC
1 TTTTCTTC
*
6802149 TTTCTTTTC
1 TTT-TCTTC
6802158 TTTTCTTC
1 TTTTCTTC
6802166 TTTTCT
1 TTTTCT
6802172 GATTTTTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 16 0.57
9 12 0.43
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTCTTC
Found at i:6802157 original size:17 final size:16
Alignment explanation
Indices: 6802128--6802168 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
6802118 TCTTTTTGAA
6802128 TTCTT-TTTCTTTCTT
1 TTCTTCTTTCTTTCTT
6802143 TTCTTCTTTCTTTTCTT
1 TTCTTCTTTC-TTTCTT
6802160 TTCTTCTTT
1 TTCTTCTTT
6802169 TCTGATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 5 0.21
16 4 0.17
17 15 0.62
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTCTTCTTTCTTTCTT
Found at i:6803125 original size:9 final size:10
Alignment explanation
Indices: 6803099--6803129 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
6803089 CTTTTTTGAA
6803099 TTCTTTTTCT
1 TTCTTTTTCT
6803109 TTCTTTTTCT
1 TTCTTTTTCT
6803119 TTC-TTTTCT
1 TTCTTTTTCT
6803128 TT
1 TT
6803130 TCTTCTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TTCTTTTTCT
Found at i:6803137 original size:13 final size:14
Alignment explanation
Indices: 6803104--6803140 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
6803094 TTGAATTCTT
6803104 TTTC-TTTCTTTTTC
1 TTTCTTTTC-TTTTC
6803118 TTTCTTTTCTTTTC
1 TTTCTTTTCTTTTC
6803132 -TTCTTTTCT
1 TTTCTTTTCT
6803141 GATTTTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.41
14 9 0.41
15 4 0.18
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTCTTTTCTTTTC
Found at i:6803630 original size:968 final size:968
Alignment explanation
Indices: 6801699--6803636 Score: 3625
Period size: 968 Copynumber: 2.0 Consensus size: 968
6801689 AAAAGATAAG
6801699 ATCACTCCACTCAACACTCGTATTTACTCTCCGGGAATATATATTTGGCTTTTAACAATTCCCCT
1 ATCACTCCACTCAACACTCGTATTTACTCTCCGGGAATATATATTTGGCTTTTAACAATTCCCCT
6801764 TCTGATCACTATCTCAATAGCCTTTTTCCACTCAAATTTCTCTGCTAAGTCCTTCGAAGAACTTA
66 TCTGATCACTATCTCAATAGCCTTTTTCCACTCAAATTTCTCTGCTAAGTCCTTCGAAGAACTTA
6801829 CTCAAGATTATAACAAGTTAATTCCTTCCTTTGTGTGCGTCGGCTGCAAATAGGTTAGGATAGAA
131 CTCAAGATTATAACAAGTTAATTCCTTCCTTTGTGTGCGTCGGCTGCAAATAGGTTAGGATAGAA
6801894 AAGGAAGAAATGGAAAAGTAGAAGAAAGGATTCAAAGGTATTTTAAAGAAAGAAATGGTTGAAGA
196 AAGGAAGAAATGGAAAAGTAGAAGAAAGGATTCAAAGGTATTTTAAAGAAAGAAATGGTTGAAGA
6801959 CAAGGAAAATGAAAGGATAGAAAAGGAAGAGGTGACTTACAATTCAAGAAACAACACTTACTGCA
261 CAAGGAAAATGAAAGGATAGAAAAGGAAGAGGTGACTTACAATTCAAGAAACAACACTTACTGCA
6802024 ACCTTTCTCAAGAACAATAAGGTTATCTTCTCTAAATGTAGATGGGCCTCTTTGATGTACTTTGC
326 ACCTTTCTCAAGAACAATAAGGTTATCTTCTCTAAATGTAGATGGGCCTCTTTGATGTACTTTGC
6802089 AATGATAGAGCACTTCCTTGGCTTTGCTTTCTTTTTGAATTCTTTTTCTTTCTTTTCTTCTTTCT
391 AATGATAGAGCACTTCCTTGGCTTTGC-TTCTTTTTGAATTCTTTTTCTTTCTTTTCTTCTTTCT
6802154 TTTCTTTTCTTCTTTTCTGATTTTTCTCTTCTTTTTGCACCCCAATTTGTTGAAGGAGTCTTTTT
455 TTTCTTTTCTTCTTTTCTGATTTTTCTCTTCTTTTTGCACCCCAATTTGTTGAAGGAGTCTTTTT
6802219 CTCTTTGAATTTCTTTTTGCTTTGTACGCCAATGACACTTTTGTTGTCAATCCAATTATGCTCTG
520 CTCTTTGAATTTCTTTTTGCTTTGTACGCCAATGACACTTTTGTTGTCAATCCAATTATGCTCTG
6802284 ATACGCTTGACGTAAGGCGAATCTACACACTTTGGTGAGAAGAGTAGATAGCCTTATTGTGTCCC
585 ATACGCTTGACGTAAGGCGAATCTACACACTTTGGTGAGAAGAGTAGATAGCCTTATTGTGTCCC
6802349 GATCTAGGATTGACAAGTACTGATGTCCTTGATTAATAAGCTTGGGCTGCCAAATAATAAGACAG
650 GATCTAGGATTGACAAGTACTGATGTCCTTGATTAATAAGCTTGGGCTGCCAAATAATAAGACAG
6802414 AAATATGATTAATAATGGGTTTAAGAATGAATAATATAAGTATGGAATGAAAGAATAAGAATAGA
715 AAATATGATTAATAATGGGTTTAAGAATGAATAATATAAGTATGGAATGAAAGAATAAGAATAGA
6802479 GATGGCTGCGGAATTGATGGATTGATGGGTGTTGTTGATGATGGAAATGACGAAAATGGAGATGG
780 GATGGCTGCGGAATTGATGGATTGATGGGTGTTGTTGATGATGGAAATGACGAAAATGGAGATGG
6802544 TGGTGATAGTATCCCAAACACGCCAAAGAGGAAACTATGCTATGAAGCACAATCCCGGTCTTTAC
845 TGGTGATAGTATCCCAAACACGCCAAAGAGGAAACTATGCTATGAAGCACAATCCCGGTCTTTAC
6802609 AAACTGCTTGAGGGGTGGTGATCGTGTCTTCAACCCACTAGATAACAATCTAGGAATTT
910 AAACTGCTTGAGGGGTGGTGATCGTGTCTTCAACCCACTAGATAACAATCTAGGAATTT
6802668 ATCACTCCACTCAACACTCGTATTTACTCT-CGGGAATATATATTTGGCTTTTAACAATTCCCCT
1 ATCACTCCACTCAACACTCGTATTTACTCTCCGGGAATATATATTTGGCTTTTAACAATTCCCCT
6802732 TCTGATCTCACTATCTCAATAGCCTTTTTCCACTCAAATTTCTCTTGCTAAGTCCTTCGAAGAAC
66 TCTGA--TCACTATCTCAATAGCCTTTTTCCACTCAAATTTCTC-TGCTAAGTCCTTCGAAGAAC
6802797 -TACTCAAGATTATAACAAGTTAATTCCTTCCTTTGTGTGCGTCGGCTGCAAATAGGTTAGGATA
128 TTACTCAAGATTATAACAAGTTAATTCCTTCCTTTGTGTGCGTCGGCTGCAAATAGGTTAGGATA
6802861 GAAAAAGGAATAGAAATGGAAAAGTAGAAGAAAGGATTCAAAGGTATTTTAAAGAAAGAAATGGT
193 G-AAAAGG-A-AGAAATGGAAAAGTAGAAGAAAGGATTCAAAGGTATTTTAAAGAAAGAAATGGT
6802926 TGAAGACAAGGAAAATGAAAGGATAGAAAAGGAAGAGGTGACTTACAATTCAAGAAACAACACTT
255 TGAAGACAAGGAAAATGAAAGGATAGAAAAGGAAGAGGTGACTTACAATTCAAGAAACAACACTT
6802991 ACTGCAACCTTTCTCAAGAACAATAAGGTTATCTTCTCTAAATGTAGATGGGCCTCTTTGATGTA
320 ACTGCAACCTTTCTCAAGAACAATAAGGTTATCTTCTCTAAATGTAGATGGGCCTCTTTGATGTA
6803056 CTTTGCAATGATAGAGCACTTTCCTTGGCTTTGC-T-TTTTTGAATTCTTTTTCTTTC-TTT-TT
385 CTTTGCAATGATAGAGCAC-TTCCTTGGCTTTGCTTCTTTTTGAATTCTTTTTCTTTCTTTTCTT
6803117 CTTTCTTTTCTTTTCTTCTTTTCTGATTTTTCTC-TCTTTTTGCACCCCAATTTGTTGAAGGAGT
449 CTTTCTTTTCTTTTCTTCTTTTCTGATTTTTCTCTTCTTTTTGCACCCCAATTTGTTGAAGGAGT
6803181 CTTTTTCTCTTTTGAATTTCTTTTTGCTTTGTACGCCAATGACACTTTTGTTGTCAAT-CAATTA
514 CTTTTTCTC-TTTGAATTTCTTTTTGCTTTGTACGCCAATGACACTTTTGTTGTCAATCCAATTA
6803245 TGCTCTGATAACGCTTGACGTAAGGCGAATCTACACAC-TTGGTGAGAAGAGTAGATAGCCTTAT
578 TGCTCTGAT-ACGCTTGACGTAAGGCGAATCTACACACTTTGGTGAGAAGAGTAGATAGCCTTAT
6803309 TGTGTCCCGATCTAGGA-TGACAAGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCCAAATA
642 TGTGTCCCGATCTAGGATTGACAAGTACTGATGTCCTTG-ATTAATAAGCTTGGGCTGCCAAATA
6803373 ATAAGACAGAAATATGATTAATAATGGGTTTAAGAAATGAATATAATATAAGTAATGGAATGAAA
706 ATAAGACAGAAATATGATTAATAATGGGTTTAAG-AATG-A-ATAATATAAGT-ATGGAATGAAA
6803438 GAATAAGAATAGAGATGGCTGCGGAATTGATGGATTGATGGGTG-TGTTGATGATGGAAATGACG
767 GAATAAGAATAGAGATGGCTGCGGAATTGATGGATTGATGGGTGTTGTTGATGATGGAAATGACG
**
6803502 -AAATGGAGATGGTGGTGATAGTATCCCCCACACGCCAAAGAGGAAACTATGCTATGAAGCACAA
832 AAAATGGAGATGGTGGTGATAGTATCCCAAACACGCCAAAGAGGAAACTATGCTATGAAGCACAA
6803566 TCCCGGTCTTTACAAACTGCTTGA-GGGTGGTGATCGTGTCTTCAACCCACTAGATAAC-ATCTA
897 TCCCGGTCTTTACAAACTGCTTGAGGGGTGGTGATCGTGTCTTCAACCCACTAGATAACAATCTA
6803629 GGAATTT
962 GGAATTT
6803636 A
1 A
6803637 GGAATCAAAA
Statistics
Matches: 953, Mismatches: 2, Indels: 29
0.97 0.00 0.03
Matches are distributed among these distances:
967 21 0.02
968 208 0.22
969 180 0.19
970 192 0.20
971 78 0.08
972 57 0.06
973 203 0.21
974 14 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (968 bp):
ATCACTCCACTCAACACTCGTATTTACTCTCCGGGAATATATATTTGGCTTTTAACAATTCCCCT
TCTGATCACTATCTCAATAGCCTTTTTCCACTCAAATTTCTCTGCTAAGTCCTTCGAAGAACTTA
CTCAAGATTATAACAAGTTAATTCCTTCCTTTGTGTGCGTCGGCTGCAAATAGGTTAGGATAGAA
AAGGAAGAAATGGAAAAGTAGAAGAAAGGATTCAAAGGTATTTTAAAGAAAGAAATGGTTGAAGA
CAAGGAAAATGAAAGGATAGAAAAGGAAGAGGTGACTTACAATTCAAGAAACAACACTTACTGCA
ACCTTTCTCAAGAACAATAAGGTTATCTTCTCTAAATGTAGATGGGCCTCTTTGATGTACTTTGC
AATGATAGAGCACTTCCTTGGCTTTGCTTCTTTTTGAATTCTTTTTCTTTCTTTTCTTCTTTCTT
TTCTTTTCTTCTTTTCTGATTTTTCTCTTCTTTTTGCACCCCAATTTGTTGAAGGAGTCTTTTTC
TCTTTGAATTTCTTTTTGCTTTGTACGCCAATGACACTTTTGTTGTCAATCCAATTATGCTCTGA
TACGCTTGACGTAAGGCGAATCTACACACTTTGGTGAGAAGAGTAGATAGCCTTATTGTGTCCCG
ATCTAGGATTGACAAGTACTGATGTCCTTGATTAATAAGCTTGGGCTGCCAAATAATAAGACAGA
AATATGATTAATAATGGGTTTAAGAATGAATAATATAAGTATGGAATGAAAGAATAAGAATAGAG
ATGGCTGCGGAATTGATGGATTGATGGGTGTTGTTGATGATGGAAATGACGAAAATGGAGATGGT
GGTGATAGTATCCCAAACACGCCAAAGAGGAAACTATGCTATGAAGCACAATCCCGGTCTTTACA
AACTGCTTGAGGGGTGGTGATCGTGTCTTCAACCCACTAGATAACAATCTAGGAATTT
Found at i:6806596 original size:13 final size:13
Alignment explanation
Indices: 6806578--6806617 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
6806568 TGAATTCTTT
6806578 TTCTTTTCTTTTC
1 TTCTTTTCTTTTC
6806591 TTCTTTTCTTTTC
1 TTCTTTTCTTTTC
6806604 TT-TTCTTCTTTTC
1 TTCTT-TTCTTTTC
6806617 T
1 T
6806618 GATTTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 2 0.08
13 24 0.92
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (13 bp):
TTCTTTTCTTTTC
Found at i:6806599 original size:18 final size:18
Alignment explanation
Indices: 6806576--6806617 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
6806566 TTTGAATTCT
6806576 TTTTCTTTTCTTTTCTTC
1 TTTTCTTTTCTTTTCTTC
6806594 TTTTCTTTTCTTTTCTTC
1 TTTTCTTTTCTTTTCTTC
6806612 TTTTCT
1 TTTTCT
6806618 GATTTTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTCTTTTCTTC
Found at i:6806631 original size:5 final size:5
Alignment explanation
Indices: 6806576--6806610 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
6806566 TTTGAATTCT
6806576 TTTTC TTTTC TTTTC --TTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT
6806611 CTTTTCTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
5 25 0.89
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:6808766 original size:20 final size:20
Alignment explanation
Indices: 6808720--6808769 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
6808710 TTCATTCATT
*
6808720 CATTAACTCATGTCATGTTA
1 CATTAGCTCATGTCATGTTA
* *
6808740 -TTCTAGCTCATGTTATGTTA
1 CAT-TAGCTCATGTCATGTTA
6808760 CATTAGCTCA
1 CATTAGCTCA
6808770 CTAGCTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 22 0.92
21 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (20 bp):
CATTAGCTCATGTCATGTTA
Found at i:6809212 original size:10 final size:10
Alignment explanation
Indices: 6809199--6809237 Score: 60
Period size: 10 Copynumber: 3.7 Consensus size: 10
6809189 TGGACTAAAG
6809199 GTAGCTGGAA
1 GTAGCTGGAA
6809209 GTAGCTGGAA
1 GTAGCTGGAA
6809219 GTAGCTGGGAGA
1 GTAGCT-GGA-A
6809231 GTAGCTG
1 GTAGCTG
6809238 AGGAGCTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 16 0.59
11 4 0.15
12 7 0.26
ACGTcount: A:0.26, C:0.10, G:0.44, T:0.21
Consensus pattern (10 bp):
GTAGCTGGAA
Found at i:6809591 original size:19 final size:19
Alignment explanation
Indices: 6809567--6809603 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6809557 TTCGGCCAAG
*
6809567 CATGTATCTTCATTAAAAT
1 CATGTATCTTCATCAAAAT
*
6809586 CATGTATTTTCATCAAAA
1 CATGTATCTTCATCAAAA
6809604 AAATCATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (19 bp):
CATGTATCTTCATCAAAAT
Found at i:6809620 original size:19 final size:19
Alignment explanation
Indices: 6809567--6809621 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
6809557 TTCGGCCAAG
* **
6809567 CATGTATCTTCATTAAAAT
1 CATGTATTTTCAAAAAAAT
6809586 CATGTATTTTCATCAAAAAAAT
1 CATGTA-TTT--TCAAAAAAAT
6809608 CATGTATTTTCAAA
1 CATGTATTTTCAAA
6809622 GGGGTTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 3 0.10
22 14 0.47
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (19 bp):
CATGTATTTTCAAAAAAAT
Found at i:6811082 original size:14 final size:14
Alignment explanation
Indices: 6811063--6811133 Score: 117
Period size: 14 Copynumber: 5.1 Consensus size: 14
6811053 ATAAGATACT
6811063 ATCTTTCCATCACC
1 ATCTTTCCATCACC
*
6811077 ATCTTTGCATCACC
1 ATCTTTCCATCACC
6811091 ATCTTTCCATCACC
1 ATCTTTCCATCACC
6811105 ATCTTTCCATCACC
1 ATCTTTCCATCACC
*
6811119 ATC-TTCCATAACC
1 ATCTTTCCATCACC
6811132 AT
1 AT
6811134 TCACGCCTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
13 11 0.20
14 43 0.80
ACGTcount: A:0.24, C:0.39, G:0.01, T:0.35
Consensus pattern (14 bp):
ATCTTTCCATCACC
Found at i:6814503 original size:63 final size:62
Alignment explanation
Indices: 6814421--6814624 Score: 243
Period size: 63 Copynumber: 3.3 Consensus size: 62
6814411 CAAGAGTTTT
*
6814421 GGGACATATGGA-ATATATACCTATGTTCTACGGAACATATGAACACAATTACCTATGTCTTTC
1 GGGACATATGGACA-GTATACCTATGTTCTACGGAACATATGAACA-AATTACCTATGTCTTTC
* *
6814484 GGGACATATGGACAGTATACCTATGTTCTACGGAATATAT-AGACATAATTACCTATGTCTTTT
1 GGGACATATGGACAGTATACCTATGTTCTACGGAACATATGA-ACA-AATTACCTATGTCTTTC
* * * * ** *
6814547 GAGACATATGGACATTATACCTATGTTCTAAGGAACATATGGACAGTTTACCTAGGT-TCTTC
1 GGGACATATGGACAGTATACCTATGTTCTACGGAACATATGAACAAATTACCTATGTCT-TTC
*
6814609 GGGACCTATGGACAGT
1 GGGACATATGGACAGT
6814625 TGTCGAGGTT
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
61 1 0.01
62 25 0.21
63 94 0.78
64 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (62 bp):
GGGACATATGGACAGTATACCTATGTTCTACGGAACATATGAACAAATTACCTATGTCTTTC
Found at i:6814508 original size:31 final size:31
Alignment explanation
Indices: 6814421--6814624 Score: 155
Period size: 31 Copynumber: 6.5 Consensus size: 31
6814411 CAAGAGTTTT
*
6814421 GGGACATATGGA-ATATATACCTATGTTCTAC
1 GGGACATATGGACA-GTATACCTATGTTCTAC
* * ** *
6814452 GGAACATATGAACACAATTACCTATG-TCTTTC
1 GGGACATATGGACAGTA-TACCTATGTTC-TAC
6814484 GGGACATATGGACAGTATACCTATGTTCTAC
1 GGGACATATGGACAGTATACCTATGTTCTAC
* * * **
6814515 GGAATATATAGACA-TAATTACCTATG-TCTTTT
1 GGGACATATGGACAGT-A-TACCTATGTTC-TAC
* * *
6814547 GAGACATATGGACATTATACCTATGTTCTAA
1 GGGACATATGGACAGTATACCTATGTTCTAC
* * * *
6814578 GGAACATATGGACAGTTTACCTAGGTTCTTC
1 GGGACATATGGACAGTATACCTATGTTCTAC
*
6814609 GGGACCTATGGACAGT
1 GGGACATATGGACAGT
6814625 TGTCGAGGTT
Statistics
Matches: 134, Mismatches: 30, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
30 1 0.01
31 84 0.63
32 48 0.36
33 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (31 bp):
GGGACATATGGACAGTATACCTATGTTCTAC
Found at i:6819219 original size:27 final size:27
Alignment explanation
Indices: 6819185--6819241 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
6819175 TTTCATTGTT
* *
6819185 TTTCTTCTTTTTGAATGC-TGAATTTC
1 TTTCTTCTTTTGGAATGCTTCAATTTC
*
6819211 TTTCTTTCTTTTGGAGTGCTTCAATTTC
1 TTTC-TTCTTTTGGAATGCTTCAATTTC
6819239 TTT
1 TTT
6819242 TCTGATTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.15
27 12 0.46
28 10 0.38
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.60
Consensus pattern (27 bp):
TTTCTTCTTTTGGAATGCTTCAATTTC
Found at i:6822007 original size:91 final size:91
Alignment explanation
Indices: 6821852--6822034 Score: 303
Period size: 91 Copynumber: 2.0 Consensus size: 91
6821842 CCTAGAACAC
*
6821852 CCATGTGCCTTGCATATGACCAGCCCCCATGTTCCTTGCATGTGGATCATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATG
*
6821917 AAGAGTTCTCTCCCTATTCGGCCAAG
66 AAGAGTTCTCTCCCTATTCAGCCAAG
** * * *
6821943 CCATGTGTTTTGCATGTGATCAGCCCCCATGTGCCTTGCATGTGGTTCATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATG
6822008 AAGAGTTCTCTCCCTATTCAGCCAAG
66 AAGAGTTCTCTCCCTATTCAGCCAAG
6822034 C
1 C
6822035 ATCAACTACC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.29
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATG
AAGAGTTCTCTCCCTATTCAGCCAAG
Found at i:6822868 original size:15 final size:15
Alignment explanation
Indices: 6822857--6822885 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6822847 ACTCAAAAAG
6822857 AAGAAAAGCAAAGAA
1 AAGAAAAGCAAAGAA
6822872 AAGAAAAG-AAAGAA
1 AAGAAAAGCAAAGAA
6822886 GTTGAAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAAAGCAAAGAA
Found at i:6826375 original size:91 final size:91
Alignment explanation
Indices: 6826220--6826400 Score: 263
Period size: 91 Copynumber: 2.0 Consensus size: 91
6826210 TCTAGAACAC
*
6826220 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTACATGTGGATCATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTACATGTGGATCATTTAGGCACCAAGATG
*
6826285 AAGAGTTTTCTCCCTATTCGGCCAAG
66 AAGAGTTCTCTCCCTATTCGGCCAAG
** * * * * * * *
6826311 CCATGTGTTTTGCATGTGATCAGCCCCTATGTGCCTTGCATTTGGTTCATTTAGGTACCAAGATG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTACATGTGGATCATTTAGGCACCAAGATG
6826376 AAGAGTTCTCTCCCTATTCGGCCAA
66 AAGAGTTCTCTCCCTATTCGGCCAA
6826401 ACATCAACTA
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 79 1.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.31
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTACATGTGGATCATTTAGGCACCAAGATG
AAGAGTTCTCTCCCTATTCGGCCAAG
Found at i:6832335 original size:2 final size:2
Alignment explanation
Indices: 6832328--6832383 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
6832318 AAACTGAACC
6832328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6832370 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
6832384 GATGAGAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6832441 original size:20 final size:20
Alignment explanation
Indices: 6832416--6832453 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
6832406 GTGACATGAA
6832416 ATACATGATAAGAAGATATG
1 ATACATGATAAGAAGATATG
6832436 ATACATGATAAGAAGATA
1 ATACATGATAAGAAGATA
6832454 CAAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.05, G:0.18, T:0.24
Consensus pattern (20 bp):
ATACATGATAAGAAGATATG
Found at i:6832727 original size:32 final size:32
Alignment explanation
Indices: 6832687--6832781 Score: 122
Period size: 32 Copynumber: 3.0 Consensus size: 32
6832677 TTATGTTCTA
6832687 CGGAACATATAGACACAATTACCTATGTCTTT
1 CGGAACATATAGACACAATTACCTATGTCTTT
* * *
6832719 CGGGACATATAGACACTA-TACCTATGT-TATA
1 CGGAACATATAGACACAATTACCTATGTCT-TT
* *
6832750 CGGAACATATGGACAAAATTACCTATGTCTTT
1 CGGAACATATAGACACAATTACCTATGTCTTT
6832782 TAAGACATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
30 1 0.02
31 24 0.46
32 26 0.50
33 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (32 bp):
CGGAACATATAGACACAATTACCTATGTCTTT
Found at i:6832744 original size:31 final size:31
Alignment explanation
Indices: 6832643--6832808 Score: 120
Period size: 31 Copynumber: 5.3 Consensus size: 31
6832633 GTCGAGGAAT
* * *
6832643 TACCTATGTCTTTTGGGACATATGGATAGTA
1 TACCTATGTCTTTCGGGACATATGGACACTA
* * * * *
6832674 TACTTATGT-TCTACGGAACATATAGACACAA
1 TACCTATGTCT-TTCGGGACATATGGACACTA
*
6832705 TTACCTATGTCTTTCGGGACATATAGACACTA
1 -TACCTATGTCTTTCGGGACATATGGACACTA
* * **
6832737 TACCTATGT-TATACGGAACATATGGACAAAA
1 TACCTATGTCT-TTCGGGACATATGGACACTA
*** * *
6832768 TTACCTATGTCTTTTAAGACATATGGGCAGTA
1 -TACCTATGTCTTTCGGGACATATGGACACTA
6832800 TACCTATGT
1 TACCTATGT
6832809 TCTAAGGAAC
Statistics
Matches: 104, Mismatches: 25, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
30 2 0.02
31 54 0.52
32 46 0.44
33 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (31 bp):
TACCTATGTCTTTCGGGACATATGGACACTA
Found at i:6832823 original size:63 final size:63
Alignment explanation
Indices: 6832640--6832824 Score: 262
Period size: 63 Copynumber: 2.9 Consensus size: 63
6832630 AGAGTCGAGG
* * * *
6832640 AATTACCTATGTCTTTTGGGACATATGGATAGTATACTTATGTTCTACGGAACATATAGACAC
1 AATTACCTATGTCTTTTGGGACATATGGACAGTATACCTATGTTCTACGGAACATATGGACAA
* * * *
6832703 AATTACCTATGTCTTTCGGGACATATAGACACTATACCTATGTTATACGGAACATATGGACAA
1 AATTACCTATGTCTTTTGGGACATATGGACAGTATACCTATGTTCTACGGAACATATGGACAA
** * *
6832766 AATTACCTATGTCTTTTAAGACATATGGGCAGTATACCTATGTTCTAAGGAACATATGG
1 AATTACCTATGTCTTTTGGGACATATGGACAGTATACCTATGTTCTACGGAACATATGG
6832825 TTATTTACCT
Statistics
Matches: 106, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 106 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (63 bp):
AATTACCTATGTCTTTTGGGACATATGGACAGTATACCTATGTTCTACGGAACATATGGACAA
Found at i:6834376 original size:36 final size:35
Alignment explanation
Indices: 6834321--6834412 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 35
6834311 GAACCAATGC
* ** *
6834321 TATAAGCGTGATATGGTGATGGACTATGGTGATGA
1 TATAGGCGTGATATGGTGATGGAAGATGGTGAAGA
6834356 TATAGGCGTGATAATGGTGATGGAAGATGGTGAAGA
1 TATAGGCGTGAT-ATGGTGATGGAAGATGGTGAAGA
6834392 TATAGGCGTGATGATGGTGAT
1 TATAGGCGTGAT-ATGGTGAT
6834413 AGACAGATTG
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 11 0.22
36 40 0.78
ACGTcount: A:0.29, C:0.04, G:0.37, T:0.29
Consensus pattern (35 bp):
TATAGGCGTGATATGGTGATGGAAGATGGTGAAGA
Found at i:6838287 original size:20 final size:20
Alignment explanation
Indices: 6838262--6838301 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6838252 AATGAAAATG
6838262 AAATGGAAAAAGGAAAGAAT
1 AAATGGAAAAAGGAAAGAAT
6838282 AAATGGAAAAAGGAAAGAAT
1 AAATGGAAAAAGGAAAGAAT
6838302 TGAAATGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (20 bp):
AAATGGAAAAAGGAAAGAAT
Found at i:6838497 original size:35 final size:36
Alignment explanation
Indices: 6838458--6838558 Score: 159
Period size: 36 Copynumber: 2.8 Consensus size: 36
6838448 AAATGGAATT
**
6838458 TGGTGATGATATAGGCGTGAT-ATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
6838493 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
* *
6838529 TGGTGAAGATATAGGCGTGATGATGGTGAT
1 TGGTGATGATATAGGCGTGATAATGGTGAT
6838559 AGACAGATTG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
35 21 0.34
36 40 0.66
ACGTcount: A:0.28, C:0.04, G:0.39, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
Found at i:6845254 original size:13 final size:13
Alignment explanation
Indices: 6845200--6845254 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
6845190 ACTATCTGTT
*
6845200 CATCACCATCTTC
1 CATCACCATATTC
*
6845213 CATCACCAT-TTT
1 CATCACCATATTC
**
6845225 C-TCACC-TATAA
1 CATCACCATATTC
6845236 CATCACCATATTC
1 CATCACCATATTC
6845249 CATCAC
1 CATCAC
6845255 TATTGCACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 1 0.03
11 7 0.21
12 8 0.24
13 18 0.53
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (13 bp):
CATCACCATATTC
Found at i:6845275 original size:35 final size:35
Alignment explanation
Indices: 6845199--6845349 Score: 203
Period size: 35 Copynumber: 4.3 Consensus size: 35
6845189 TACTATCTGT
* * *
6845199 TCATCACCATCTTCCATCACCATTTTCTCACCTATA
1 TCATCACCATCTTCCATCACCA-TTGCACGCCTATA
* * * *
6845235 ACATCACCATATTCCATCACTATTGCACTCCTATA
1 TCATCACCATCTTCCATCACCATTGCACGCCTATA
*
6845270 TCATCACCATCTTCTATCACCATTGCACGCCTATA
1 TCATCACCATCTTCCATCACCATTGCACGCCTATA
* *
6845305 TCATCACCATCTTCTATCACCATTTCACGCCTATA
1 TCATCACCATCTTCCATCACCATTGCACGCCTATA
6845340 TCATCACCAT
1 TCATCACCAT
6845350 TCCCTTATCA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
35 84 0.82
36 19 0.18
ACGTcount: A:0.27, C:0.37, G:0.03, T:0.33
Consensus pattern (35 bp):
TCATCACCATCTTCCATCACCATTGCACGCCTATA
Found at i:6849133 original size:17 final size:17
Alignment explanation
Indices: 6849098--6849133 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6849088 TTGTTTATGT
* *
6849098 TATAGAAATGGTTAGGG
1 TATAGAAATGGTAAAGG
6849115 TATAGAAATGGTAAAGG
1 TATAGAAATGGTAAAGG
6849132 TA
1 TA
6849134 GGATAAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28
Consensus pattern (17 bp):
TATAGAAATGGTAAAGG
Found at i:6849447 original size:19 final size:19
Alignment explanation
Indices: 6849422--6849481 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
6849412 TGTATGAGTC
6849422 TTTTCTT-TTTCTTTTTAT
1 TTTTCTTCTTTCTTTTTAT
*
6849440 TCTTTCTTCTTTCTTTTTGT
1 T-TTTCTTCTTTCTTTTTAT
*
6849460 TTTTCTTCTTTCTTTTTCT
1 TTTTCTTCTTTCTTTTTAT
6849479 TTT
1 TTT
6849482 GTTGTAGCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 1 0.03
19 26 0.68
20 11 0.29
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTCTTCTTTCTTTTTAT
Found at i:6849449 original size:7 final size:6
Alignment explanation
Indices: 6849422--6849481 Score: 75
Period size: 6 Copynumber: 9.5 Consensus size: 6
6849412 TGTATGAGTC
* *
6849422 TTTTCT TTTTCT TTTTAT TCTTTCT TCTTTCT TTTTGT TTTTCT TCTTTCT
1 TTTTCT TTTTCT TTTTCT T-TTTCT T-TTTCT TTTTCT TTTTCT T-TTTCT
6849473 TTTTCT TTT
1 TTTTCT TTT
6849482 GTTGTAGCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
6 30 0.62
7 18 0.38
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:6849453 original size:26 final size:25
Alignment explanation
Indices: 6849422--6849481 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
6849412 TGTATGAGTC
6849422 TTTTCTTTTTCTTTTTATTCTTTCT
1 TTTTCTTTTTCTTTTTATTCTTTCT
* *
6849447 TCTTTCTTTTTGTTTTTCTTCTTTCT
1 T-TTTCTTTTTCTTTTTATTCTTTCT
6849473 TTTTCTTTT
1 TTTTCTTTT
6849482 GTTGTAGCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 9 0.28
26 23 0.72
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTTCTTTTTCTTTTTATTCTTTCT
Found at i:6851178 original size:17 final size:17
Alignment explanation
Indices: 6851156--6851188 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6851146 AAATGTATGC
6851156 TCAT-AATAATATATAAT
1 TCATAAATAA-ATATAAT
6851173 TCATAAATAAATATAA
1 TCATAAATAAATATAA
6851189 GATAAAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TCATAAATAAATATAAT
Found at i:6856726 original size:8 final size:8
Alignment explanation
Indices: 6856715--6856739 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
6856705 TCTTTTTCTT
6856715 TTCTTTTC
1 TTCTTTTC
6856723 TTCTTTTC
1 TTCTTTTC
6856731 TTCTTTTC
1 TTCTTTTC
6856739 T
1 T
6856740 GATTTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (8 bp):
TTCTTTTC
Found at i:6856764 original size:27 final size:26
Alignment explanation
Indices: 6856702--6856764 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
6856692 CATTTTGAAC
*
6856702 TTCTCTTTTTCTTTTCTTTTCTTCTT
1 TTCTCTTTTTCTTTTCTTCTCTTCTT
6856728 TTCT-TCTTTTCTGATTT-TTCTCTTCTT
1 TTCTCT-TTTTCT--TTTCTTCTCTTCTT
*
6856755 TTGTCTTTTT
1 TTCTCTTTTT
6856765 TTCCTTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
25 1 0.03
26 10 0.32
27 16 0.52
28 4 0.13
ACGTcount: A:0.02, C:0.21, G:0.03, T:0.75
Consensus pattern (26 bp):
TTCTCTTTTTCTTTTCTTCTCTTCTT
Found at i:6857734 original size:20 final size:20
Alignment explanation
Indices: 6857709--6857754 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
6857699 TCATGTTCAT
*
6857709 GGCATGTGTGTGGCTGAATA
1 GGCATGTGTGTGGCCGAATA
6857729 GGCATGTGTGTGGCCGAATA
1 GGCATGTGTGTGGCCGAATA
6857749 GGCATG
1 GGCATG
6857755 GAGCTCTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.13, G:0.41, T:0.26
Consensus pattern (20 bp):
GGCATGTGTGTGGCCGAATA
Found at i:6860289 original size:19 final size:19
Alignment explanation
Indices: 6860261--6860309 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
6860251 AGGCCAAGAG
*
6860261 CATGTATTTTCATTAAAGT
1 CATGTATTTTCATTAAAAT
*
6860280 CATGTTTTTTCATTAAAAT
1 CATGTATTTTCATTAAAAT
6860299 CATGTCATTTT
1 CATGT-ATTTT
6860310 GAGAAGGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:6862373 original size:24 final size:25
Alignment explanation
Indices: 6862327--6862381 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
6862317 ACAGTTATGC
*
6862327 CACTTGAAGTTCAAAAAGATGTG-T
1 CACTTGAAGTGCAAAAAGATGTGAT
* * *
6862351 CACTTGAAGTGCCACAAGTTGTGAT
1 CACTTGAAGTGCAAAAAGATGTGAT
6862376 CA-TTGA
1 CACTTGA
6862382 GGCTCCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (25 bp):
CACTTGAAGTGCAAAAAGATGTGAT
Found at i:6864352 original size:19 final size:19
Alignment explanation
Indices: 6864324--6864372 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
6864314 AGGCCAGGAG
*
6864324 CATGTATTTTCATTAAAGT
1 CATGTATTTTCATTAAAAT
*
6864343 CATGTTTTTTCATTAAAAT
1 CATGTATTTTCATTAAAAT
6864362 CATGTCATTTT
1 CATGT-ATTTT
6864373 AAGAAGGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:6866437 original size:24 final size:25
Alignment explanation
Indices: 6866391--6866445 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
6866381 ACAGTTATGC
*
6866391 CACTTGAAGTTCAAAAAGATGTG-T
1 CACTTGAAGTGCAAAAAGATGTGAT
* * *
6866415 CACTTGAAGTGCCACAAGTTGTGAT
1 CACTTGAAGTGCAAAAAGATGTGAT
6866440 CA-TTGA
1 CACTTGA
6866446 GGCTCCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (25 bp):
CACTTGAAGTGCAAAAAGATGTGAT
Found at i:6870840 original size:64 final size:64
Alignment explanation
Indices: 6870767--6870895 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
6870757 GTGATGTGGT
*
6870767 GCCAATGAGTGCAAGTCACATTATTCTCGGATGTCCTTGGCAATTTGATAAAAAGGCTACTCAC
1 GCCAATGAGTGCAAGTCACATTATTCTCGGACGTCCTTGGCAATTTGATAAAAAGGCTACTCAC
6870831 GCCAATGAGTGCAAGTCACATTATTCTCGGACGTCCTTGGCAATTTGATAAAAAGGCTACTCAC
1 GCCAATGAGTGCAAGTCACATTATTCTCGGACGTCCTTGGCAATTTGATAAAAAGGCTACTCAC
6870895 G
1 G
6870896 ATTGATTTTC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (64 bp):
GCCAATGAGTGCAAGTCACATTATTCTCGGACGTCCTTGGCAATTTGATAAAAAGGCTACTCAC
Found at i:6875464 original size:11 final size:11
Alignment explanation
Indices: 6875450--6875505 Score: 51
Period size: 13 Copynumber: 4.7 Consensus size: 11
6875440 TCTTTTTGAA
6875450 TTCTTTTTCTT
1 TTCTTTTTCTT
6875461 TTCTTTTCTTCTT
1 TTC-TTT-TTCTT
*
6875474 TTCTTCTTCGTTT
1 TTCTTTTTC--TT
6875487 TGTCTTTTTC-T
1 T-TCTTTTTCTT
6875498 TTCTTTTT
1 TTCTTTTT
6875506 GCACTCCAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
10 7 0.18
11 8 0.21
12 5 0.13
13 11 0.29
14 7 0.18
ACGTcount: A:0.00, C:0.20, G:0.04, T:0.77
Consensus pattern (11 bp):
TTCTTTTTCTT
Found at i:6882130 original size:17 final size:18
Alignment explanation
Indices: 6882102--6882136 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
6882092 AGTAATATGA
6882102 TAATTAAGAAATGAAAAG
1 TAATTAAGAAATGAAAAG
*
6882120 TAATT-AGAAATGGAAAG
1 TAATTAAGAAATGAAAAG
6882137 ATTTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
TAATTAAGAAATGAAAAG
Found at i:6882298 original size:33 final size:33
Alignment explanation
Indices: 6882256--6882324 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
6882246 GTTGATGACT
*
6882256 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
6882289 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
6882322 GAA
1 GAA
6882325 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:6887971 original size:33 final size:33
Alignment explanation
Indices: 6887929--6887997 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
6887919 GCTGATGAAT
*
6887929 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
6887962 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
6887995 GAA
1 GAA
6887998 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:6901872 original size:16 final size:16
Alignment explanation
Indices: 6901830--6901871 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
6901820 GTGCTTCAAC
6901830 TTTCTT-TC-TTTCTT
1 TTTCTTCTCTTTTCTT
*
6901844 TTTCTTTTCTTTTCTT
1 TTTCTTCTCTTTTCTT
6901860 TTTCTTC-CTTTT
1 TTTCTTCTCTTTT
6901872 TGAGTGCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 6 0.24
15 7 0.28
16 12 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTTCTCTTTTCTT
Found at i:6901899 original size:23 final size:25
Alignment explanation
Indices: 6901860--6901913 Score: 76
Period size: 23 Copynumber: 2.2 Consensus size: 25
6901850 TTCTTTTCTT
6901860 TTTCTTCCTTTTTGAGTGCTTTCAC
1 TTTCTTCCTTTTTGAGTGCTTTCAC
* *
6901885 TTTCTT-C-TTTTGAGTGCTTTGAT
1 TTTCTTCCTTTTTGAGTGCTTTCAC
6901908 TTTCTT
1 TTTCTT
6901914 TAATGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 20 0.74
24 1 0.04
25 6 0.22
ACGTcount: A:0.07, C:0.19, G:0.13, T:0.61
Consensus pattern (25 bp):
TTTCTTCCTTTTTGAGTGCTTTCAC
Found at i:6905441 original size:21 final size:21
Alignment explanation
Indices: 6905402--6905441 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6905392 ATGCATGATT
* * *
6905402 ATGATATAATACAATGTAAAA
1 ATGACATAATAAAAGGTAAAA
6905423 ATGACATAATAAAAGGTAA
1 ATGACATAATAAAAGGTAA
6905442 GGTAAGAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.12, T:0.25
Consensus pattern (21 bp):
ATGACATAATAAAAGGTAAAA
Found at i:6913769 original size:21 final size:21
Alignment explanation
Indices: 6913745--6913784 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
6913735 CTCACTTTCA
6913745 CTCTCAAT-TCTCTTTTCAATG
1 CTCTCAATGTCT-TTTTCAATG
6913766 CTCTCAATGTCTTTTTCAA
1 CTCTCAATGTCTTTTTCAA
6913785 CTCTCGTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.20, C:0.28, G:0.05, T:0.47
Consensus pattern (21 bp):
CTCTCAATGTCTTTTTCAATG
Found at i:6916300 original size:33 final size:33
Alignment explanation
Indices: 6916250--6916326 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
6916240 TATGCCTTGT
*
6916250 TGGTGAAT-GAAGGATGAT-TTAATGGTGATGAAA
1 TGGT-AATGGAAGGATGATGTTAATGGCG-TGAAA
* *
6916283 TGGTAATGGAAGGATGATGTTATTGGCGTGATA
1 TGGTAATGGAAGGATGATGTTAATGGCGTGAAA
*
6916316 TGGTGATGGAA
1 TGGTAATGGAA
6916327 TATGGTGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 3 0.08
33 28 0.74
34 7 0.18
ACGTcount: A:0.31, C:0.01, G:0.36, T:0.31
Consensus pattern (33 bp):
TGGTAATGGAAGGATGATGTTAATGGCGTGAAA
Found at i:6926466 original size:33 final size:33
Alignment explanation
Indices: 6926424--6926492 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
6926414 GTTGATGAAT
*
6926424 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
6926457 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
6926490 GAA
1 GAA
6926493 TATGGAGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:6929354 original size:21 final size:21
Alignment explanation
Indices: 6929330--6929369 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
6929320 CTCATTTTCA
6929330 CTCTCAAT-TCTCTTTTCAATG
1 CTCTCAATGTCT-TTTTCAATG
6929351 CTCTCAATGTCTTTTTCAA
1 CTCTCAATGTCTTTTTCAA
6929370 CTCTCGTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.20, C:0.28, G:0.05, T:0.47
Consensus pattern (21 bp):
CTCTCAATGTCTTTTTCAATG
Found at i:6934020 original size:15 final size:15
Alignment explanation
Indices: 6934009--6934037 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6933999 ACTCAAAAAG
6934009 AAGAAAAGCAAAGAA
1 AAGAAAAGCAAAGAA
6934024 AAGAAAAG-AAAGAA
1 AAGAAAAGCAAAGAA
6934038 GCTGAAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAAAGCAAAGAA
Found at i:6935362 original size:24 final size:23
Alignment explanation
Indices: 6935323--6935380 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
6935313 GGTGATCCAC
*
6935323 AAGACATGT-CCTTTGACATTTCAA
1 AAGA-ATGTACCTTTGA-AATTCAA
6935347 AAG-ATGTACCTCTTGAAATTCAA
1 AAGAATGTACCT-TTGAAATTCAA
6935370 AAGAATGTACC
1 AAGAATGTACC
6935381 AATTGAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.13
23 12 0.40
24 14 0.47
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (23 bp):
AAGAATGTACCTTTGAAATTCAA
Found at i:6935386 original size:24 final size:23
Alignment explanation
Indices: 6935342--6935387 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
6935332 CCTTTGACAT
**
6935342 TTCAAAAGATGTACCTCTTGAAA
1 TTCAAAAGATGTACCAATTGAAA
6935365 TTCAAAAGAATGTACCAATTGAA
1 TTCAAAAG-ATGTACCAATTGAA
6935388 GTGCCACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.28
Consensus pattern (23 bp):
TTCAAAAGATGTACCAATTGAAA
Found at i:6939842 original size:13 final size:13
Alignment explanation
Indices: 6939826--6939858 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
6939816 TCGTCAACCA
6939826 TCATCAACATCCT
1 TCATCAACATCCT
6939839 TCATCAACATCCT
1 TCATCAACATCCT
6939852 TCATCAA
1 TCATCAA
6939859 GACCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.30
Consensus pattern (13 bp):
TCATCAACATCCT
Found at i:6945984 original size:24 final size:24
Alignment explanation
Indices: 6945952--6946007 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
6945942 CTATTCTTTC
6945952 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
6945976 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
6946000 GCTTCAAT
1 GCTTCAAT
6946008 CGAACTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (24 bp):
GCTTCAATTGAGCTCAAATTTTAG
Found at i:6946274 original size:21 final size:21
Alignment explanation
Indices: 6946250--6946290 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
6946240 CAGTTTTGCC
6946250 GGTTTTCAGCCGGTTCACCCT
1 GGTTTTCAGCCGGTTCACCCT
6946271 GGTTTTCAGCCGGTTCACCC
1 GGTTTTCAGCCGGTTCACCC
6946291 CGATTTTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.34, G:0.24, T:0.32
Consensus pattern (21 bp):
GGTTTTCAGCCGGTTCACCCT
Found at i:6946297 original size:21 final size:21
Alignment explanation
Indices: 6946252--6946298 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6946242 GTTTTGCCGG
* *
6946252 TTTTCAGCCGGTTCACCCTGG
1 TTTTCAGCCGGTTCACCCCGA
6946273 TTTTCAGCCGGTTCACCCCGA
1 TTTTCAGCCGGTTCACCCCGA
6946294 TTTTC
1 TTTTC
6946299 CCGGTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.11, C:0.34, G:0.19, T:0.36
Consensus pattern (21 bp):
TTTTCAGCCGGTTCACCCCGA
Found at i:6952107 original size:15 final size:16
Alignment explanation
Indices: 6952067--6952107 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
6952057 AAAGTTTTAA
*
6952067 TATAGTTATTTTCATC
1 TATAGTTATTATCATC
6952083 TATA-TATATTAT-ATC
1 TATAGT-TATTATCATC
6952098 TATAGTTATT
1 TATAGTTATT
6952108 GATACGATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (16 bp):
TATAGTTATTATCATC
Found at i:6970843 original size:16 final size:16
Alignment explanation
Indices: 6970824--6970872 Score: 80
Period size: 16 Copynumber: 2.9 Consensus size: 16
6970814 TCTTTTTGAA
6970824 TTCTTTTTCTTTTCTT
1 TTCTTTTTCTTTTCTT
6970840 TTCTTTTTCTTTTCTT
1 TTCTTTTTCTTTTCTT
6970856 TTCTTTTCTTCTTTTCT
1 TTC-TTT-TTCTTTTCT
6970873 GATTTTTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 19 0.61
17 3 0.10
18 9 0.29
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTCTTTTTCTTTTCTT
Found at i:6970872 original size:5 final size:5
Alignment explanation
Indices: 6970828--6970865 Score: 67
Period size: 5 Copynumber: 7.4 Consensus size: 5
6970818 TTTGAATTCT
6970828 TTTTC TTTTC TTTTC TTTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC TT
6970866 CTTTTCTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:6981244 original size:14 final size:13
Alignment explanation
Indices: 6981227--6981262 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
6981217 TTGGCTCTTT
6981227 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
*
6981240 CTTTTTTTTTTTTG
1 -TTTTGTTTTTTTG
6981254 TTTTGTTTT
1 TTTTGTTTT
6981263 GAAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (13 bp):
TTTTGTTTTTTTG
Found at i:6981246 original size:19 final size:19
Alignment explanation
Indices: 6981206--6981262 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
6981196 TTTTTTGAAA
* *
6981206 TTTTGGTTTTTTTGGCTCTT
1 TTTTTGTTTTTTT-GCTTTT
6981226 TTTTTGTTTTTTTGCTTTT
1 TTTTTGTTTTTTTGCTTTT
6981245 TTTTT-TTTGTTTTG-TTTT
1 TTTTTGTTT-TTTTGCTTTT
6981263 GAAAAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.21
19 15 0.44
20 12 0.35
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.81
Consensus pattern (19 bp):
TTTTTGTTTTTTTGCTTTT
Found at i:6981248 original size:20 final size:20
Alignment explanation
Indices: 6981206--6981262 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
6981196 TTTTTTGAAA
* *
6981206 TTTTGGTTTTTTTGGC-TCTT
1 TTTTTGTTTTTTT-GCTTTTT
6981226 TTTTTGTTTTTTTGCTTTTT
1 TTTTTGTTTTTTTGCTTTTT
*
6981246 TTTTT-TTGTTTTG-TTTT
1 TTTTTGTTTTTTTGCTTTT
6981263 GAAAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 4 0.12
19 9 0.27
20 20 0.61
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.81
Consensus pattern (20 bp):
TTTTTGTTTTTTTGCTTTTT
Found at i:6982539 original size:24 final size:24
Alignment explanation
Indices: 6982512--6982583 Score: 135
Period size: 24 Copynumber: 3.0 Consensus size: 24
6982502 CATGTATCAA
6982512 GAAAGAACTGAAATTATAAGAAAT
1 GAAAGAACTGAAATTATAAGAAAT
6982536 GAAAGAACTGAAATTATAAGAAAT
1 GAAAGAACTGAAATTATAAGAAAT
*
6982560 GGAAGAACTGAAATTATAAGAAAT
1 GAAAGAACTGAAATTATAAGAAAT
6982584 TAAGAAATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.57, C:0.04, G:0.18, T:0.21
Consensus pattern (24 bp):
GAAAGAACTGAAATTATAAGAAAT
Found at i:6989752 original size:21 final size:19
Alignment explanation
Indices: 6989710--6989761 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
6989700 CGGCCAAGAG
* *
6989710 CATGTATCTTCATTACAAT
1 CATGTATTTTCATTAAAAT
6989729 CATGTATTTTCATTAAAAAAT
1 CATGTATTTTCATT--AAAAT
6989750 CATGTATTTTCA
1 CATGTATTTTCA
6989762 AAGGGGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
21 16 0.55
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:6993883 original size:20 final size:19
Alignment explanation
Indices: 6993835--6993884 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
6993825 GACCACGAGT
* *
6993835 ATGTATCTTCATTAAAATC
1 ATGTATTTTCATTAAAACC
* *
6993854 ATATAGTTTCATTAAAAACC
1 ATGTATTTTCATT-AAAACC
6993874 ATGTATTTTCA
1 ATGTATTTTCA
6993885 AAGGGTTTTC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (19 bp):
ATGTATTTTCATTAAAACC
Found at i:6998852 original size:15 final size:15
Alignment explanation
Indices: 6998832--6998878 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
6998822 TTATCTTTAT
6998832 TTTCTCTTTATTTCA
1 TTTCTCTTTATTTCA
6998847 TTTCTCTTTATTTCA
1 TTTCTCTTTATTTCA
*
6998862 TTTCTTTTTATTTCA
1 TTTCTCTTTATTTCA
6998877 TT
1 TT
6998879 CTTGCTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTCTCTTTATTTCA
Found at i:6998887 original size:15 final size:15
Alignment explanation
Indices: 6998839--6998888 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
6998829 TATTTTCTCT
6998839 TTATTTCATTTC-TC
1 TTATTTCATTTCTTC
*
6998853 TTTATTTCATTTCTTT
1 -TTATTTCATTTCTTC
6998869 TTATTTCA-TTCTTGC
1 TTATTTCATTTCTT-C
6998884 TTATT
1 TTATT
6998889 ATTACCTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 5 0.16
15 25 0.81
16 1 0.03
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (15 bp):
TTATTTCATTTCTTC
Found at i:7012524 original size:986 final size:986
Alignment explanation
Indices: 7010360--7013295 Score: 5320
Period size: 986 Copynumber: 3.0 Consensus size: 986
7010350 CGATAAAGAT
** *
7010360 GATTGATGGTGCAAATGGATTTGTGG-ATAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
1 GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
**
7010424 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCATGATGAAAAGGCAA
66 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAA
7010489 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
131 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
* * *
7010554 AGGCACAAGGCAATCAGCACTTGCAAAAACAAACTCTCGTTGTATTATTGATCAAAGAAATCTTA
196 AGGCACAAGGCAATCAGCACTTGAAAAAACAAACTCTCGTTGTATTATTAATCAAAGAAATCTGA
*
7010619 TTTACTAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
261 TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
*
7010684 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATCCCTAATAAAATAATAATAACTAAA
326 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
7010749 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
391 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
7010814 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
456 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
*
7010879 AATAATGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGACCATATCTT
521 AATAACGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGACCATATCTT
* * *
7010944 GAGTTCCCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGACAGACGG-GGAA
586 GAGTTACCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGACAGACGGTTGTA
* * *
7011008 TGCT--TG-A-AC---T-G--C-GAT------TTGA--CCCTTCAAAAAGTTTTTGCAAATCTGC
651 T-CTACAGAAGACATGTCGACCGGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGC
*
7011054 TGCTATTAGACCCTTCCGGATGAATACTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGG
715 TGCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGG
7011119 TCCGGCCTCGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTG
780 TCCGGCCTCGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTG
*
7011184 GTGCATGTATCATCTCCCCCTTCCTTAAAAGTATTCGTCCTCGAATCTGAAATATCAAAAGGAGA
845 GTGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCGAATCTGAAATATCAAAAGGAGA
* *
7011249 TAAGTCAAAAACATTAAAGGATGCACTCACGTTATACTCACTGGGAAGATCAATGCGGTAGGCGT
910 TAAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGGCGT
7011314 TGTCATTGATGC
975 TGTCATTGATGC
*
7011326 GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATTGATAAGTGTCCTATCGAGCCCTCCTAGT
1 GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
*
7011391 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGTGATGAAAAGGCAA
66 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAA
7011456 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
131 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
* * *
7011521 AGGCACAAGGCAATCAGCACTTGCAAAAACAAACTCTTGTTGTATTATTGATCAAAGAAATCTGA
196 AGGCACAAGGCAATCAGCACTTGAAAAAACAAACTCTCGTTGTATTATTAATCAAAGAAATCTGA
7011586 TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
261 TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
7011651 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
326 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
7011716 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
391 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
7011781 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
456 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
* *
7011846 AATAACGTATTAATCCCGTATAGGATTTCCTGTATGCACCGTCTTCAGTAAAATTACCATATCTT
521 AATAACGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGACCATATCTT
*
7011911 GAGTTACCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGATAGACGGTTGTA
586 GAGTTACCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGACAGACGGTTGTA
7011976 TCTACAGAAGACATGTCGACCGGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGCT
651 TCTACAGAAGACATGTCGACCGGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGCT
7012041 GCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGGT
716 GCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGGT
* *
7012106 CCGGCCTCGTTTGATAGGGCCAAGTGGTATAGTAAATTTATCATCCTTAGCTTTAGGGCATGTGG
781 CCGGCCTCGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTGG
* *
7012171 TGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCAAATATGAAATATCAAAAGGAGAT
846 TGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCGAATCTGAAATATCAAAAGGAGAT
7012236 AAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGGCGTT
911 AAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGGCGTT
7012301 GTCATTGATGC
976 GTCATTGATGC
7012312 GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
1 GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
7012377 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAA
66 CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAA
7012442 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
131 ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
*
7012507 AGGCACAAGGCAATCAGCACTTGAAAAAACGAACTCTCGTTGTATTATTAATCAAAGAAATCTGA
196 AGGCACAAGGCAATCAGCACTTGAAAAAACAAACTCTCGTTGTATTATTAATCAAAGAAATCTGA
7012572 TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
261 TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
7012637 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
326 GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
7012702 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
391 AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
7012767 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
456 TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
*
7012832 AATAACGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGATCATATCTT
521 AATAACGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGACCATATCTT
* * *
7012897 GAGTTCCCGATATCGGATTGATGCGATTCAATAACCGTTGGAAAGATAAGAGACATACGGTTGTA
586 GAGTTACCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGACAGACGGTTGTA
* * *
7012962 TCTCCAGAAGATATGTCGACCTGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGCT
651 TCTACAGAAGACATGTCGACCGGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGCT
*
7013027 GCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTAGT
716 GCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGGT
*
7013092 CCGGCCTTGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTGG
781 CCGGCCTCGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTGG
7013157 TGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCGAATCTGAAATATCAAAAGGAGAT
846 TGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCGAATCTGAAATATCAAAAGGAGAT
*
7013222 AAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGACGTT
911 AAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGGCGTT
7013287 GTCATTGAT
976 GTCATTGAT
7013296 TCGTTCAAGA
Statistics
Matches: 1899, Mismatches: 50, Indels: 22
0.96 0.03 0.01
Matches are distributed among these distances:
966 24 0.01
967 608 0.32
968 3 0.00
969 1 0.00
970 1 0.00
971 2 0.00
974 1 0.00
975 1 0.00
977 1 0.00
978 3 0.00
984 3 0.00
986 1251 0.66
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (986 bp):
GATTGATGGTGCGGATGGATTTGTGGAAAAATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGT
CGCAATGAAAAGGCAAACACGATAAATGGCTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAA
ATTGGAGTGTGAAGATTAATCTCCCTCACAAGAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGA
AGGCACAAGGCAATCAGCACTTGAAAAAACAAACTCTCGTTGTATTATTAATCAAAGAAATCTGA
TTTACAAAGTTGAATGAAGCCTCCTTTATATAGGGGCTGAATTCTAAAGGTCCTAAATAACTAAA
GAATAAAATATTAATAAACTAAACATGTTTTAACTCTAATTCCTAATAAAATAATAATAACTAAA
AATATTGTTTTAACCCAACCTTAATTCCTAATAAAATAATAAATCTGATCCTAAAAGATAATTAA
TCATCCTATATTAAATTATATTACAAATAATCAATATAAATATTGAAAATTCGTAATATTTACAA
AATAACGTATTAATCCCGTATAGGATTTCCTGCATGCACCGTCTTCAGTAAAATGACCATATCTT
GAGTTACCGATATCGGATTGATGCGATTCAAGAACCGTTGGAAAGATAAGAGACAGACGGTTGTA
TCTACAGAAGACATGTCGACCGGATAACAACTGGATCCCCTTCAAAAAGTTGTTGCAAATCTGCT
GCTATTAGACCCTTCCGGATGAATGCTTGAACTGCGATTTGAAGCTTGTCTTTAAGAAGTTTGGT
CCGGCCTCGTGTGATAGGGCCAAGTGGTATAGTAAATTCATCATCCTTAGCTTTAGGGCATGTGG
TGCATGTATCATCTCCCCCTTCCTTAAAAGGATTCGTCCTCGAATCTGAAATATCAAAAGGAGAT
AAGTCAGAAACATTAAAGGATGCACTCACGTTATACTCACCGGGAAGATCAATGCGGTAGGCGTT
GTCATTGATGC
Found at i:7018500 original size:11 final size:11
Alignment explanation
Indices: 7018486--7018553 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 11
7018476 AAATTTTGGC
7018486 TTTTTTTGCTT
1 TTTTTTTGCTT
7018497 TTTTTTATGCCTT
1 TTTTTT-TG-CTT
**
7018510 TTTTTTACCTT
1 TTTTTTTGCTT
*
7018521 TTTTTTTACCTTT
1 TTTTTTT-GC-TT
*
7018534 TTTTTTTGTTT
1 TTTTTTTGCTT
7018545 TTTGTTTTG
1 TTT-TTTTG
7018554 AAAAAAATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
11 20 0.43
12 9 0.19
13 18 0.38
ACGTcount: A:0.04, C:0.10, G:0.07, T:0.78
Consensus pattern (11 bp):
TTTTTTTGCTT
Found at i:7018501 original size:12 final size:12
Alignment explanation
Indices: 7018486--7018553 Score: 66
Period size: 12 Copynumber: 5.7 Consensus size: 12
7018476 AAATTTTGGC
7018486 TTTTTTTGCTTT
1 TTTTTTTGCTTT
* *
7018498 TTTTTATGCCTT
1 TTTTTTTGCTTT
**
7018510 TTTTTTACCTTT
1 TTTTTTTGCTTT
**
7018522 TTTTTTACCTTT
1 TTTTTTTGCTTT
7018534 TTTTTTTG-TTT
1 TTTTTTTGCTTT
7018545 TTTGTTTTG
1 TTT-TTTTG
7018554 AAAAAAATAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
11 6 0.13
12 41 0.87
ACGTcount: A:0.04, C:0.10, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTTTTTGCTTT
Found at i:7018540 original size:13 final size:12
Alignment explanation
Indices: 7018494--7018539 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
7018484 GCTTTTTTTG
*
7018494 CTTTTTTTTATGC
1 CTTTTTTTT-TAC
7018507 C-TTTTTTTTAC
1 CTTTTTTTTTAC
7018518 CTTTTTTTTTAC
1 CTTTTTTTTTAC
7018530 CTTTTTTTTT
1 CTTTTTTTTT
7018540 TGTTTTTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 3 0.10
12 27 0.87
13 1 0.03
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.76
Consensus pattern (12 bp):
CTTTTTTTTTAC
Found at i:7022133 original size:11 final size:11
Alignment explanation
Indices: 7022119--7022178 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
7022109 AAATTTTGGC
7022119 TTTTTTTGCTT
1 TTTTTTTGCTT
*
7022130 TTTTTGTGC-T
1 TTTTTTTGCTT
**
7022140 TTTTTTACCTTT
1 TTTTTTTGC-TT
*
7022152 TTTTTTTGCCT
1 TTTTTTTGCTT
7022163 TTTTTTTG-TT
1 TTTTTTTGCTT
7022173 TTTTTT
1 TTTTTT
7022179 GAAAAAAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
10 14 0.36
11 17 0.44
12 8 0.21
ACGTcount: A:0.02, C:0.10, G:0.08, T:0.80
Consensus pattern (11 bp):
TTTTTTTGCTT
Found at i:7022155 original size:13 final size:13
Alignment explanation
Indices: 7022139--7022169 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7022129 TTTTTTGTGC
7022139 TTTTTTTACCTTT
1 TTTTTTTACCTTT
*
7022152 TTTTTTTGCCTTT
1 TTTTTTTACCTTT
7022165 TTTTT
1 TTTTT
7022170 GTTTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTTACCTTT
Found at i:7022168 original size:10 final size:10
Alignment explanation
Indices: 7022112--7022155 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
7022102 TTTTTTGAAA
7022112 TTTTGGCTTT
1 TTTTGGCTTT
7022122 TTTT-GCTTT
1 TTTTGGCTTT
7022131 TTTTGTGCTTT
1 TTTTG-GCTTT
**
7022142 TTTTACCTTT
1 TTTTGGCTTT
7022152 TTTT
1 TTTT
7022156 TTTGCCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 9 0.30
10 12 0.40
11 9 0.30
ACGTcount: A:0.02, C:0.11, G:0.11, T:0.75
Consensus pattern (10 bp):
TTTTGGCTTT
Found at i:7025770 original size:12 final size:12
Alignment explanation
Indices: 7025755--7025820 Score: 84
Period size: 11 Copynumber: 5.7 Consensus size: 12
7025745 AAATTTTGGC
7025755 TTTTTTTG-CTT
1 TTTTTTTGCCTT
7025766 TTTTTTGTGCCTT
1 TTTTTT-TGCCTT
*
7025779 TTTTTTTACCTT
1 TTTTTTTGCCTT
7025791 TTTTTTTGCC-T
1 TTTTTTTGCCTT
*
7025802 TTTTTTTG-TTT
1 TTTTTTTGCCTT
7025813 TTTTTTTG
1 TTTTTTTG
7025821 AAAAAAATAG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
11 24 0.49
12 16 0.33
13 9 0.18
ACGTcount: A:0.02, C:0.11, G:0.09, T:0.79
Consensus pattern (12 bp):
TTTTTTTGCCTT
Found at i:7025782 original size:24 final size:22
Alignment explanation
Indices: 7025755--7025820 Score: 87
Period size: 24 Copynumber: 2.9 Consensus size: 22
7025745 AAATTTTGGC
7025755 TTTTTTTGCTTTTTTTTGTGCCTT
1 TTTTTTTGCTTTTTTTT-TGCC-T
*
7025779 TTTTTTTACCTTTTTTTTTGCCT
1 TTTTTTT-GCTTTTTTTTTGCCT
*
7025802 TTTTTTTGTTTTTTTTTTG
1 TTTTTTTGCTTTTTTTTTG
7025821 AAAAAAATAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 10 0.26
23 8 0.21
24 11 0.29
25 9 0.24
ACGTcount: A:0.02, C:0.11, G:0.09, T:0.79
Consensus pattern (22 bp):
TTTTTTTGCTTTTTTTTTGCCT
Found at i:7029457 original size:23 final size:23
Alignment explanation
Indices: 7029396--7029446 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
7029386 AAATTTTGGC
7029396 TTTTTTTA-CTTTTTTTGTGCCT
1 TTTTTTTACCTTTTTTTGTGCCT
*
7029418 TTTTTTTACCTTTTTTTTTGCCT
1 TTTTTTTACCTTTTTTTGTGCCT
7029441 TTTTTT
1 TTTTTT
7029447 GTTTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (23 bp):
TTTTTTTACCTTTTTTTGTGCCT
Found at i:7034856 original size:6 final size:6
Alignment explanation
Indices: 7034847--7034894 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
7034837 AGAAGAAGAC
** *
7034847 AAAAAG -AAAAG AAAAAG -AAAAG AAAAAG AAAATT ACAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
7034893 AA
1 AA
7034895 GTTGAAAGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 10 0.29
6 24 0.71
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:7034861 original size:11 final size:11
Alignment explanation
Indices: 7034847--7034878 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
7034837 AGAAGAAGAC
7034847 AAAAAGAAAAG
1 AAAAAGAAAAG
7034858 AAAAAGAAAAG
1 AAAAAGAAAAG
7034869 AAAAAGAAAA
1 AAAAAGAAAA
7034879 TTACAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:7048087 original size:19 final size:21
Alignment explanation
Indices: 7048044--7048095 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
7048034 GAAACCCCTT
7048044 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
7048065 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
7048084 TGAAGATACATG
1 TGAAAATACATG
7048096 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:7052294 original size:19 final size:20
Alignment explanation
Indices: 7052252--7052294 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7052242 GAAACCCCTT
7052252 TGAAAATACATGACTTTAAA
1 TGAAAATACATGACTTTAAA
*
7052272 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGACTTTAAA
7052291 TGAA
1 TGAA
7052295 GATATGCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGACTTTAAA
Found at i:7053795 original size:13 final size:13
Alignment explanation
Indices: 7053777--7053829 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
7053767 ATCTCTATCC
7053777 ATTTCATTTCTTT
1 ATTTCATTTCTTT
*
7053790 ATTTCATTTC-AT
1 ATTTCATTTCTTT
* *
7053802 ATTTCAATTTCATC
1 ATTTC-ATTTCTTT
7053816 ATTTC-TTTCTTT
1 ATTTCATTTCTTT
7053828 AT
1 AT
7053830 ATTGTCCAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 13 0.39
13 15 0.45
14 5 0.15
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTCATTTCTTT
Found at i:7054268 original size:16 final size:16
Alignment explanation
Indices: 7054224--7054267 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
7054214 GAGTTGTAAG
7054224 TTATCTTCATTTTCTAT
1 TTAT-TTCATTTTCTAT
7054241 TTATTTCATTTTCT-T
1 TTATTTCATTTTCTAT
*
7054256 TTCTTTCATTTT
1 TTATTTCATTTT
7054268 TTTCTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 12 0.46
16 10 0.38
17 4 0.15
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTCATTTTCTAT
Found at i:7054636 original size:30 final size:30
Alignment explanation
Indices: 7054600--7054692 Score: 186
Period size: 30 Copynumber: 3.1 Consensus size: 30
7054590 ACCATGTCAC
7054600 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
1 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
7054630 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
1 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
7054660 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
1 AAGACAAGTTCTTGTCATTAAAAAGGCTTT
7054690 AAG
1 AAG
7054693 CACTCAAATC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (30 bp):
AAGACAAGTTCTTGTCATTAAAAAGGCTTT
Found at i:7057788 original size:25 final size:25
Alignment explanation
Indices: 7057754--7057806 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
7057744 TCTTCATCTT
7057754 GGCGCCTAAATGAGACCACATGCAA
1 GGCGCCTAAATGAGACCACATGCAA
7057779 GGCGCCTAAATGAGACCACATGCAA
1 GGCGCCTAAATGAGACCACATGCAA
7057804 GGC
1 GGC
7057807 ACATAGGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.11
Consensus pattern (25 bp):
GGCGCCTAAATGAGACCACATGCAA
Found at i:7061636 original size:24 final size:24
Alignment explanation
Indices: 7061585--7061642 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 24
7061575 CTTTTCTTTG
*
7061585 CTTTTTCTTCTTTTGAGTGCTGGA
1 CTTTTTCTTCTTTTGAGTGCTGCA
* *
7061609 -TTTTTCTTTTTTTGAGTGCTTCA
1 CTTTTTCTTCTTTTGAGTGCTGCA
*
7061632 CTTTTTTTTCT
1 CTTTTTCTTCT
7061643 GATTTTTCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.07, C:0.16, G:0.14, T:0.64
Consensus pattern (24 bp):
CTTTTTCTTCTTTTGAGTGCTGCA
Found at i:7063477 original size:15 final size:16
Alignment explanation
Indices: 7063459--7063492 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7063449 CTATTATACC
*
7063459 TCTAC-CATTACCATT
1 TCTACACATAACCATT
7063474 TCTACACATAACCATT
1 TCTACACATAACCATT
7063490 TCT
1 TCT
7063493 TTTATGCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (16 bp):
TCTACACATAACCATT
Found at i:7081528 original size:20 final size:18
Alignment explanation
Indices: 7081506--7081558 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
7081496 TTGAATTTTT
*
7081506 TTTTTCTTTTCTTTTCTTC
1 TTTTTCTTTTCTTTT-GTC
7081525 TTTTTCTTCTTCGTTTTGTC
1 TTTTTCTT-TTC-TTTTGTC
7081545 TTTTTC-TTTCTTTT
1 TTTTTCTTTTCTTTT
7081559 TGCACTCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 4 0.13
18 3 0.10
19 9 0.29
20 11 0.35
21 4 0.13
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTCTTTTGTC
Found at i:7104472 original size:13 final size:12
Alignment explanation
Indices: 7104449--7104505 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
7104439 TCTTTTTGAA
7104449 TTCTTTTTTCTT
1 TTCTTTTTTCTT
7104461 TTCTTTTCTTCTT
1 TTCTTTT-TTCTT
*
7104474 TTC-TTCTTCGTT
1 TTCTTTTTTC-TT
*
7104486 TTGTCTTTTTC-T
1 TTCT-TTTTTCTT
7104498 TTCTTTTT
1 TTCTTTTT
7104506 GCACTCCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
11 7 0.19
12 17 0.46
13 8 0.22
14 5 0.14
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.77
Consensus pattern (12 bp):
TTCTTTTTTCTT
Found at i:7118730 original size:19 final size:19
Alignment explanation
Indices: 7118691--7118726 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7118681 TTACAACAAA
7118691 ACAAAAAGAAAGAAGAAAG
1 ACAAAAAGAAAGAAGAAAG
7118710 ACAAAAAGAAA-AAGAAA
1 ACAAAAAGAAAGAAGAAA
7118727 AGACTCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00
Consensus pattern (19 bp):
ACAAAAAGAAAGAAGAAAG
Found at i:7122715 original size:677 final size:683
Alignment explanation
Indices: 7121412--7122773 Score: 1820
Period size: 677 Copynumber: 2.0 Consensus size: 683
7121402 AAAGAAGGGG
* *
7121412 TGATGTGATCCAAATCAGCAACATAAATGTCATTGCATCTCCAACCTTTCGAAATAATCAAAGGG
1 TGATGTGATCCAAATCAGCAACAAAAATGACATTGCATCTCCAACCTTTCGAAATAATCAAAGGG
*
7121477 GGATTTTCTCTAACTTATTCTTTCTTTATACCATAGTTATAATAATAGTTTAAATACATTATATT
66 GGATTTTCTCTAACTTATTCTTTCTTTATACCATAGTTATAATAATAGCTTAAATACATTATATT
* *
7121542 TATAGTTATGATGATGATGTTATGTAATGTATAAAGTTACTATTATGAACCATATATTTATACAT
131 TATAGTTATGATGATGATATTATGTAATGTATAAAGTTACTATTATGAACC--A-A-TCATA-AT
* *
7121607 TTATATCTTATATTAGTTAGCTTATAATATGCTTTCTTTTGTAGGTGCATAATCGGCCACATAAT
191 TTATATCTTATATTACTTAGCTTATAATATGCTTTCTTTTGTAGGTACATAATCGGCCACATAAT
*
7121672 GAGAGCTAACTTAAAGCTAGCATTCGAGTCCAAGAGCTATGGAAACTTGACTAGGACAACTTCGG
256 GAGAGCTAACTTAAAGCTAGAATTCGAGTCCAAGAGCTATGGAAACTTGACTAGGACAACTTCGG
** * * *
7121737 GACAACTCAAGAACATTTTGGGACAAAGTTGCCAGCTGACCCCCTAGCTCATAGGTGACTTGAGA
321 GACAACTCAAGAACATAATGGGACAAAGTTGCCAGCTGACCCCCGAGCTCATAGCTCACTTGAGA
* *
7121802 TAGACTTTTGAGCTAGCTAGATACCTCATTTCAGCTAGAGAGTTGCTCCATCATCACCACCACAC
386 TAGACTTTTGAGCTAGCTAGAGACCTCATTTCAGCTAGAGAGTTGCACCATCATCACCACCACAC
* * * *
7121867 AGAGTACTTCAAATATGGTCTAGGTCAATTTTTGTGGATTCGTACCTTTTCGCGAAGAGTTACCA
451 AGAGCACTACAAATATGGTCTAGGTCAAATTTTGTGAATTCGTACCTTTTCGCGAAGAGTTACCA
* * * *
7121932 TTCCAAGAGGTGCCTTTTCATAAGGAGCTATCCTAAGACTCACCTACATGTCCTTCATCTATGGC
516 ATCCAAGAAGTGCCTTTTCACAAGGAGCTATCCTAAGACTCACCTACATGTCATTCATCTATGGC
* * *
7121997 CAGCTCATCTTTAGCTCAAACACATGGAAAGTTGCTCAAATGATGAAAGGTTACCTTCCACAAAT
581 CAGCTCATCTTCAGCTCAAACACATGGAAAGTAGCTCAAATGATGAAAGGTTACCTTACACAAAT
7122062 GTGACCTTTCATAACAAGTTACTACCCCATTGATGACA
646 GTGACCTTTCATAACAAGTTACTACCCCATTGATGACA
* * * ** **
7122100 TGATGTGATCCGATTCAGCATCAAAAATGGAC-TTGCATCTCCAACCTTTCTCAATGTTCAAAGG
1 TGATGTGATCCAAATCAGCAACAAAAAT-GACATTGCATCTCCAACCTTTCGAAATAATCAAAGG
* * * *
7122164 GGGATTTTCTTTAACTTAATT-TTTCTTTATACCATAGTTATGATAATGGCTTACATACATTATA
65 GGGATTTTCTCTAACTT-ATTCTTTCTTTATACCATAGTTATAATAATAGCTTAAATACATTATA
* *
7122228 TTTATAGTTATGATGATGATATTATG-AATGTATGAAGTTATTATTATGAACC-A-CAT-ATTTA
129 TTTATAGTTATGATGATGATATTATGTAATGTATAAAGTTACTATTATGAACCAATCATAATTTA
** * *
7122289 TATCTTATATTACTTAGCTTATAA-ATGCTTTCTTTTGTAGGTACATGTTCGGCCACATCATGGG
194 TATCTTATATTACTTAGCTTATAATATGCTTTCTTTTGTAGGTACATAATCGGCCACATAATGAG
* * **
7122353 AGCTGATTTAAAGCTAGAATT-GAAGT-CAATGAGCTA-GGAAACCTT-ACATAGGATGACTT-G
259 AGCTAACTTAAAGCTAGAATTCG-AGTCCAA-GAGCTATGGAAA-CTTGAC-TAGGACAACTTCG
* * * * *
7122413 GGAGATCATGAAGAACA-AATGGTGA-AAAGTTGTCAGCTGACCCTCGAGCTCATAGCTCACTTG
320 GGACAAC-TCAAGAACATAATGG-GACAAAGTTGCCAGCTGACCCCCGAGCTCATAGCTCACTTG
* * * * **
7122476 AGCTGGACTTTTGAGCTAGCTAGAGACTTCATTTCAGCTGGAGAGTTGCACCATCATCTTCACCA
383 AGATAGACTTTTGAGCTAGCTAGAGACCTCATTTCAGCTAGAGAGTTGCACCATCATCACCACCA
*
7122541 CACAGAGCACTACAAATATGGTCTAGGTCAAATTTTGTGAATTCGTACCTTTTCGCGAAGAGTTG
448 CACAGAGCACTACAAATATGGTCTAGGTCAAATTTTGTGAATTCGTACCTTTTCGCGAAGAGTTA
* * * * *
7122606 CCAATCCGAGAAGTGACC-TTTCACAAGGAGCTGTCCTATGACTCATCTTCATG-CAATTCATCT
513 CCAATCCAAGAAGTG-CCTTTTCACAAGGAGCTATCCTAAGACTCACCTACATGTC-ATTCATCT
* * ***
7122669 ATGGCCAGCTCATCTTCAGCTCAAACTCATGGGAAGTAGCTCAAATGATGAAAGGTTGTTTTACA
576 ATGGCCAGCTCATCTTCAGCTCAAACACATGGAAAGTAGCTCAAATGATGAAAGGTTACCTTACA
** * *
7122734 CAAATGTGACCTTTCATAATTAGTTGCTGCCCCATTGATG
641 CAAATGTGACCTTTCATAACAAGTTACTACCCCATTGATG
7122774 CCAAGTCACC
Statistics
Matches: 591, Mismatches: 73, Indels: 31
0.85 0.11 0.04
Matches are distributed among these distances:
676 1 0.00
677 312 0.53
678 86 0.15
679 28 0.05
681 2 0.00
683 1 0.00
687 24 0.04
688 132 0.22
689 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (683 bp):
TGATGTGATCCAAATCAGCAACAAAAATGACATTGCATCTCCAACCTTTCGAAATAATCAAAGGG
GGATTTTCTCTAACTTATTCTTTCTTTATACCATAGTTATAATAATAGCTTAAATACATTATATT
TATAGTTATGATGATGATATTATGTAATGTATAAAGTTACTATTATGAACCAATCATAATTTATA
TCTTATATTACTTAGCTTATAATATGCTTTCTTTTGTAGGTACATAATCGGCCACATAATGAGAG
CTAACTTAAAGCTAGAATTCGAGTCCAAGAGCTATGGAAACTTGACTAGGACAACTTCGGGACAA
CTCAAGAACATAATGGGACAAAGTTGCCAGCTGACCCCCGAGCTCATAGCTCACTTGAGATAGAC
TTTTGAGCTAGCTAGAGACCTCATTTCAGCTAGAGAGTTGCACCATCATCACCACCACACAGAGC
ACTACAAATATGGTCTAGGTCAAATTTTGTGAATTCGTACCTTTTCGCGAAGAGTTACCAATCCA
AGAAGTGCCTTTTCACAAGGAGCTATCCTAAGACTCACCTACATGTCATTCATCTATGGCCAGCT
CATCTTCAGCTCAAACACATGGAAAGTAGCTCAAATGATGAAAGGTTACCTTACACAAATGTGAC
CTTTCATAACAAGTTACTACCCCATTGATGACA
Found at i:7123448 original size:36 final size:36
Alignment explanation
Indices: 7123396--7123508 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
7123386 GATACTATTT
* *
7123396 TCATCACCATAATCCATCTCCATTATCGCGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7123432 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
7123468 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7123503 ACATCA
1 TCATCA
7123509 TCTTTCCATT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 17 0.24
36 54 0.76
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:7123451 original size:13 final size:11
Alignment explanation
Indices: 7123429--7123494 Score: 62
Period size: 13 Copynumber: 5.5 Consensus size: 11
7123419 TATCGCGCCT
7123429 ATATCATCACC
1 ATATCATCACC
7123440 ATAGTCCATCACC
1 ATA-T-CATCACC
*
7123453 ATTATCA-CGCC
1 A-TATCATCACC
7123464 TATATCATCACC
1 -ATATCATCACC
7123476 ATATTCCATCACC
1 ATA-T-CATCACC
7123489 ATATCA
1 ATATCA
7123495 CGCCAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
11 16 0.35
12 9 0.20
13 19 0.41
14 2 0.04
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7127969 original size:36 final size:36
Alignment explanation
Indices: 7127917--7128029 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
7127907 GATACTATTT
* *
7127917 TCATCACCATAATCCATCTCCATTATCGCGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7127953 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
7127989 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7128024 ACATCA
1 TCATCA
7128030 TCTTTCCATT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 17 0.24
36 54 0.76
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:7127972 original size:13 final size:11
Alignment explanation
Indices: 7127950--7128015 Score: 62
Period size: 13 Copynumber: 5.5 Consensus size: 11
7127940 TATCGCGCCT
7127950 ATATCATCACC
1 ATATCATCACC
7127961 ATAGTCCATCACC
1 ATA-T-CATCACC
*
7127974 ATTATCA-CGCC
1 A-TATCATCACC
7127985 TATATCATCACC
1 -ATATCATCACC
7127997 ATATTCCATCACC
1 ATA-T-CATCACC
7128010 ATATCA
1 ATATCA
7128016 CGCCAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
11 16 0.35
12 9 0.20
13 19 0.41
14 2 0.04
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7132490 original size:36 final size:36
Alignment explanation
Indices: 7132438--7132550 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
7132428 GATACTATTT
* *
7132438 TCATCACCATAATCCATCTCCATTATCGCGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7132474 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
7132510 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7132545 ACATCA
1 TCATCA
7132551 TCTTTCCATT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 17 0.24
36 54 0.76
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:7132493 original size:13 final size:11
Alignment explanation
Indices: 7132471--7132536 Score: 62
Period size: 13 Copynumber: 5.5 Consensus size: 11
7132461 TATCGCGCCT
7132471 ATATCATCACC
1 ATATCATCACC
7132482 ATAGTCCATCACC
1 ATA-T-CATCACC
*
7132495 ATTATCA-CGCC
1 A-TATCATCACC
7132506 TATATCATCACC
1 -ATATCATCACC
7132518 ATATTCCATCACC
1 ATA-T-CATCACC
7132531 ATATCA
1 ATATCA
7132537 CGCCAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
11 16 0.35
12 9 0.20
13 19 0.41
14 2 0.04
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7137011 original size:36 final size:36
Alignment explanation
Indices: 7136959--7137071 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
7136949 GATACTATTT
* *
7136959 TCATCACCATAATCCATCTCCATTATCGCGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7136995 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
7137031 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7137066 ACATCA
1 TCATCA
7137072 TCTTTCCATT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 17 0.24
36 54 0.76
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Done.