Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9158330
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 35
Found at i:7137014 original size:13 final size:11
Alignment explanation
Indices: 7136992--7137057 Score: 62
Period size: 13 Copynumber: 5.5 Consensus size: 11
7136982 TATCGCGCCT
7136992 ATATCATCACC
1 ATATCATCACC
7137003 ATAGTCCATCACC
1 ATA-T-CATCACC
*
7137016 ATTATCA-CGCC
1 A-TATCATCACC
7137027 TATATCATCACC
1 -ATATCATCACC
7137039 ATATTCCATCACC
1 ATA-T-CATCACC
7137052 ATATCA
1 ATATCA
7137058 CGCCAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
11 16 0.35
12 9 0.20
13 19 0.41
14 2 0.04
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7142710 original size:12 final size:13
Alignment explanation
Indices: 7142686--7142710 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7142676 CTTGAACTTC
7142686 TTTTTGTATTTTT
1 TTTTTGTATTTTT
7142699 TTTTTGTATTTT
1 TTTTTGTATTTT
7142711 CGTTGTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTTGTATTTTT
Found at i:7142837 original size:40 final size:40
Alignment explanation
Indices: 7142782--7142862 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
7142772 GATGTACGGT
*
7142782 GCTTCTTCCAACTAGCTCTGATGCCAAATGACGCGATCAC
1 GCTTCTTCCAACTAGCTCTGATACCAAATGACGCGATCAC
7142822 GCTTCTTCCAACTAGCTCTGATACCAAATGACGCGATCAC
1 GCTTCTTCCAACTAGCTCTGATACCAAATGACGCGATCAC
7142862 G
1 G
7142863 GTCGGACCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (40 bp):
GCTTCTTCCAACTAGCTCTGATACCAAATGACGCGATCAC
Found at i:7147537 original size:36 final size:36
Alignment explanation
Indices: 7147485--7147597 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
7147475 GATACTATTT
*
7147485 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7147521 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
7147557 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
7147592 ACATCA
1 TCATCA
7147598 TCTTTCCAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 17 0.24
36 55 0.76
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:7147540 original size:13 final size:11
Alignment explanation
Indices: 7147485--7147583 Score: 67
Period size: 13 Copynumber: 8.3 Consensus size: 11
7147475 GATACTATTT
7147485 TCATCACCATAA
1 TCATCACCAT-A
*
7147497 TCCATCTCCATTA
1 T-CATCACCA-TA
*
7147510 TCA-CGCCTATA
1 TCATCACC-ATA
7147521 TCATCACCATA
1 TCATCACCATA
7147532 GTCCATCACCATTA
1 -T-CATCACCA-TA
*
7147546 TCA-CGCCTATA
1 TCATCACC-ATA
7147557 TCATCACCATA
1 TCATCACCATA
7147568 TTCCATCACCATA
1 -T-CATCACCATA
7147581 TCA
1 TCA
7147584 CGCCAATAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.34
12 16 0.23
13 28 0.39
14 3 0.04
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:7150378 original size:15 final size:15
Alignment explanation
Indices: 7150358--7150403 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 15
7150348 TTTGATATCA
7150358 TTTCTTTCCATTTCC
1 TTTCTTTCCATTTCC
7150373 TTTCTTAT-CATTTCC
1 TTTCTT-TCCATTTCC
7150388 TTTCTTCTTCCATTTC
1 TTTC-T-TTCCATTTC
7150404 TTATTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 17 0.63
16 3 0.11
17 7 0.26
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTCTTTCCATTTCC
Found at i:7160511 original size:5 final size:5
Alignment explanation
Indices: 7160497--7160538 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
7160487 AGTGCTTCTA
*
7160497 CTTTT C-TTT CTTTT CTTTT CTTTT -TTTT CTTTT -TCTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
7160539 TGAATGCTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 11 0.34
5 21 0.66
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
CTTTT
Found at i:7160511 original size:9 final size:9
Alignment explanation
Indices: 7160497--7160538 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
7160487 AGTGCTTCTA
7160497 CTTTTCTTT
1 CTTTTCTTT
7160506 CTTTTCTTTT
1 CTTTTC-TTT
*
7160516 CTTTTTTTT
1 CTTTTCTTT
7160525 CTTTT-TCTT
1 CTTTTCT-TT
7160534 CTTTT
1 CTTTT
7160539 TGAATGCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 1 0.03
9 21 0.70
10 8 0.27
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
CTTTTCTTT
Found at i:7160516 original size:14 final size:14
Alignment explanation
Indices: 7160497--7160538 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
7160487 AGTGCTTCTA
7160497 CTTTTCTTTCTTTT
1 CTTTTCTTTCTTTT
*
7160511 CTTTTCTTTTTTTT
1 CTTTTCTTTCTTTT
7160525 CTTTT-TCTTCTTTT
1 CTTTTCT-TTCTTTT
7160539 TGAATGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 1 0.04
14 24 0.96
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
CTTTTCTTTCTTTT
Found at i:7160553 original size:24 final size:24
Alignment explanation
Indices: 7160526--7160581 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7160516 CTTTTTTTTC
*
7160526 TTTTTCTTCTTTTTGAATGCTTGA
1 TTTTTCTTCTTTTGGAATGCTTGA
*
7160550 TTTTTCTTCTTTTGGAGTGCTTGA
1 TTTTTCTTCTTTTGGAATGCTTGA
*
7160574 CTTTTCTT
1 TTTTTCTT
7160582 TGCTAATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.62
Consensus pattern (24 bp):
TTTTTCTTCTTTTGGAATGCTTGA
Found at i:7165371 original size:219 final size:219
Alignment explanation
Indices: 7164992--7165432 Score: 882
Period size: 219 Copynumber: 2.0 Consensus size: 219
7164982 ACAAAATAAT
7164992 TGCATTATTTCACTAATTAATGATTGTATTTGTAAGTTCAGTTGACTTGCATTTTCTCTAGGAGG
1 TGCATTATTTCACTAATTAATGATTGTATTTGTAAGTTCAGTTGACTTGCATTTTCTCTAGGAGG
7165057 GCTTTGAGACATTGTTATAAATAATAAATAAAAAATACTTACCAGCACACTCACAAAAGCCTCAC
66 GCTTTGAGACATTGTTATAAATAATAAATAAAAAATACTTACCAGCACACTCACAAAAGCCTCAC
7165122 AATCTTCACTCCAAAGCAAAGTAGATGAGCACTCCACTCACGCTCGTGTTTCCTCTCGGGAATAT
131 AATCTTCACTCCAAAGCAAAGTAGATGAGCACTCCACTCACGCTCGTGTTTCCTCTCGGGAATAT
7165187 ATGCTTGGCTTTTAACAATTCCCC
196 ATGCTTGGCTTTTAACAATTCCCC
7165211 TGCATTATTTCACTAATTAATGATTGTATTTGTAAGTTCAGTTGACTTGCATTTTCTCTAGGAGG
1 TGCATTATTTCACTAATTAATGATTGTATTTGTAAGTTCAGTTGACTTGCATTTTCTCTAGGAGG
7165276 GCTTTGAGACATTGTTATAAATAATAAATAAAAAATACTTACCAGCACACTCACAAAAGCCTCAC
66 GCTTTGAGACATTGTTATAAATAATAAATAAAAAATACTTACCAGCACACTCACAAAAGCCTCAC
7165341 AATCTTCACTCCAAAGCAAAGTAGATGAGCACTCCACTCACGCTCGTGTTTCCTCTCGGGAATAT
131 AATCTTCACTCCAAAGCAAAGTAGATGAGCACTCCACTCACGCTCGTGTTTCCTCTCGGGAATAT
7165406 ATGCTTGGCTTTTAACAATTCCCC
196 ATGCTTGGCTTTTAACAATTCCCC
7165430 TGC
1 TGC
7165433 TAATCTAACT
Statistics
Matches: 222, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 222 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (219 bp):
TGCATTATTTCACTAATTAATGATTGTATTTGTAAGTTCAGTTGACTTGCATTTTCTCTAGGAGG
GCTTTGAGACATTGTTATAAATAATAAATAAAAAATACTTACCAGCACACTCACAAAAGCCTCAC
AATCTTCACTCCAAAGCAAAGTAGATGAGCACTCCACTCACGCTCGTGTTTCCTCTCGGGAATAT
ATGCTTGGCTTTTAACAATTCCCC
Found at i:7179466 original size:13 final size:12
Alignment explanation
Indices: 7179443--7179498 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
7179433 TCTTTTTGAA
7179443 TTCTTTTTTCTT
1 TTCTTTTTTCTT
7179455 TTCTTTTCTTCTT
1 TTCTTTT-TTCTT
*
7179468 TTC-TTCTTCGTT
1 TTCTTTTTTC-TT
*
7179480 TTGTCTTTTTC-T
1 TTCT-TTTTTCTT
7179492 TTCTTTT
1 TTCTTTT
7179499 GCACTCCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
11 6 0.17
12 17 0.47
13 8 0.22
14 5 0.14
ACGTcount: A:0.00, C:0.20, G:0.04, T:0.77
Consensus pattern (12 bp):
TTCTTTTTTCTT
Found at i:7185900 original size:35 final size:37
Alignment explanation
Indices: 7185831--7185910 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
7185821 ATACTATTTC
* *
7185831 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
*
7185868 CATCACCATAGTCCATC-ACCA-TATCACACCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
7185903 CATCACCA
1 CATCACCA
7185911 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 21 0.52
36 3 0.08
37 16 0.40
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACACCTATAT
Found at i:7185904 original size:11 final size:11
Alignment explanation
Indices: 7185864--7185910 Score: 60
Period size: 11 Copynumber: 4.1 Consensus size: 11
7185854 TATCACGCCT
7185864 ATATCATCACC
1 ATATCATCACC
7185875 ATAGTCCATCACC
1 ATA-T-CATCACC
7185888 ATATCA-CACC
1 ATATCATCACC
7185898 TATATCATCACC
1 -ATATCATCACC
7185910 A
1 A
7185911 AATTCTCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 4 0.12
11 12 0.38
12 6 0.19
13 10 0.31
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.26
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7185908 original size:22 final size:24
Alignment explanation
Indices: 7185864--7185910 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7185854 TATCACGCCT
7185864 ATATCATCACCATAGTCCATCACC
1 ATATCATCACCATAGTCCATCACC
7185888 ATATCA-CACCTATA-T-CATCACC
1 ATATCATCACC-ATAGTCCATCACC
7185910 A
1 A
7185911 AATTCTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 9 0.41
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.26
Consensus pattern (24 bp):
ATATCATCACCATAGTCCATCACC
Found at i:7190390 original size:35 final size:37
Alignment explanation
Indices: 7190321--7190400 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
7190311 ATACTATTTC
* *
7190321 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
*
7190358 CATCACCATAGTCCATC-ACCA-TATCACACCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
7190393 CATCACCA
1 CATCACCA
7190401 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 21 0.52
36 3 0.08
37 16 0.40
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACACCTATAT
Found at i:7190394 original size:11 final size:11
Alignment explanation
Indices: 7190354--7190400 Score: 60
Period size: 11 Copynumber: 4.1 Consensus size: 11
7190344 TATCACGCCT
7190354 ATATCATCACC
1 ATATCATCACC
7190365 ATAGTCCATCACC
1 ATA-T-CATCACC
7190378 ATATCA-CACC
1 ATATCATCACC
7190388 TATATCATCACC
1 -ATATCATCACC
7190400 A
1 A
7190401 AATTCTCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 4 0.12
11 12 0.38
12 6 0.19
13 10 0.31
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.26
Consensus pattern (11 bp):
ATATCATCACC
Found at i:7190398 original size:22 final size:24
Alignment explanation
Indices: 7190354--7190400 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7190344 TATCACGCCT
7190354 ATATCATCACCATAGTCCATCACC
1 ATATCATCACCATAGTCCATCACC
7190378 ATATCA-CACCTATA-T-CATCACC
1 ATATCATCACC-ATAGTCCATCACC
7190400 A
1 A
7190401 AATTCTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 9 0.41
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.26
Consensus pattern (24 bp):
ATATCATCACCATAGTCCATCACC
Found at i:7201860 original size:45 final size:45
Alignment explanation
Indices: 7201782--7201867 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
7201772 TCATCTATCC
*
7201782 ATCACCATTCACGCCTATATCATAATTTATCCATCACCATCCTCA
1 ATCACCATTCACGCCTATATCATAATATATCCATCACCATCCTCA
* *
7201827 ATCACCATTCACGCCTATATCATCATCAT-TCCATTACCATC
1 ATCACCATTCACGCCTATATCATAAT-ATATCCATCACCATC
7201868 TCTTCACCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.30, C:0.36, G:0.02, T:0.31
Consensus pattern (45 bp):
ATCACCATTCACGCCTATATCATAATATATCCATCACCATCCTCA
Found at i:7202032 original size:32 final size:31
Alignment explanation
Indices: 7201995--7202066 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 31
7201985 TATCATTTCT
* *
7201995 TTCCATTTCC-TTACTT-ATCATTTCCTTTCTTC
1 TTCCATTTCCATT--TTAATCATTT-CTTTCATA
7202027 TTCCATATTCCATTTTAATCATTTCTTTCATA
1 TTCCAT-TTCCATTTTAATCATTTCTTTCATA
7202059 TTCCATTT
1 TTCCATTT
7202067 TAATCATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 2 0.06
32 20 0.57
33 11 0.31
34 2 0.06
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (31 bp):
TTCCATTTCCATTTTAATCATTTCTTTCATA
Found at i:7202079 original size:25 final size:25
Alignment explanation
Indices: 7202024--7202080 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
7202014 ATTTCCTTTC
*
7202024 TTCTTCCATATTCCATTTTAATCAT
1 TTCTTTCATATTCCATTTTAATCAT
7202049 TTCTTTCATATTCCATTTTAATCAT
1 TTCTTTCATATTCCATTTTAATCAT
7202074 TTCTTTC
1 TTCTTTC
7202081 TTTGAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56
Consensus pattern (25 bp):
TTCTTTCATATTCCATTTTAATCAT
Found at i:7202298 original size:6 final size:6
Alignment explanation
Indices: 7202257--7202300 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
7202247 AAAAGCAACA
*
7202257 AAAAGAG AAAAAG AAAGAAG AAAAAC AAAAAG -AAAAG AAAAAG A
1 AAAA-AG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
7202301 CTCATACATC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
5 5 0.15
6 18 0.55
7 10 0.30
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:7203156 original size:331 final size:331
Alignment explanation
Indices: 7202554--7203209 Score: 1116
Period size: 331 Copynumber: 2.0 Consensus size: 331
7202544 TTTTCTATCA
*
7202554 TACCCTATATCATAACCATTTCTATCCCTAACCATTTCTAAACCGACGCACAAACTAAAGAAACT
1 TACCCTATATCATAACCATTTCTATCCCTAAACATTTCTAAACCGACGCACAAACTAAAGAAACT
* *
7202619 TGCTCAATCTTGAGTTAGTTCTTTAAAAGGACCCACAAGAGATAATCGAGTGGTAAAAGGAAAAC
66 TGCTCAATCTTGAGTTAGTTCTTTAAAAGGACCCACAAGAGAGAATCGAGTGGTAAAAGAAAAAC
*
7202684 GAGAGGGCGAGATCAGAAGGGGGATCAGAAAAAGCCAAGAATATATCCCCGAGTGCAAACACGAG
131 GAGAGGGCGAGATCAGAAGGGGGATCAGAAAAAGCCAAGAATATATCCCCGAGTGCAAACACAAG
* *
7202749 TGTGAGTAGAGTGCAATCTAAAATTTTATTTGGAGTTATCAAGTGAGGGTTTATGAGTGTGCTGG
196 TGTGAGTAGAGTGCAATATAAAATTTTATTTGGAGTGATCAAGTGAGGGTTTATGAGTGTGCTGG
* *
7202814 TAAGGTTTTGATTTGTTTTATTATACTAACCATGTCTCAAATCCCTAGAGAAAATACAGGAGCAC
261 TAAGGTTTTGATTTGTTTTATTACACTAACCATGTCTCAAAGCCCTAGAGAAAATACAGGAGCAC
7202879 CAATCC
326 CAATCC
* * *
7202885 TACCCTATATCATAACCATTTCTAT-CCTAAAACATTTCTATACTGACGTACAAACTAAAGAAAC
1 TACCCTATATCATAACCATTTCTATCCCT-AAACATTTCTAAACCGACGCACAAACTAAAGAAAC
*
7202949 TTGCTCAATCTTGAGTTAGTTCTTTAAAAGGACTCACAAGAGAGAATCGAGTGGTAAAAGAAAAA
65 TTGCTCAATCTTGAGTTAGTTCTTTAAAAGGACCCACAAGAGAGAATCGAGTGGTAAAAGAAAAA
*
7203014 TGAGAGGGCGAGATCAGAAGGGGGATCAGAAAAAGCCAAGAATATATCCCCGAGTGCAAACACAA
130 CGAGAGGGCGAGATCAGAAGGGGGATCAGAAAAAGCCAAGAATATATCCCCGAGTGCAAACACAA
* * * *
7203079 GTGTGAGTAGAGTGCAATATGAAATTTTCTTTGGAGTGATCAAGTGAGGTTTTGTGAGTGTGCTG
195 GTGTGAGTAGAGTGCAATATAAAATTTTATTTGGAGTGATCAAGTGAGGGTTTATGAGTGTGCTG
* * *
7203144 GTAAGGTTTTGATTTGTTTTATTGCACTAACTATGTCTCAAAGCCCTAGAGAAAATGCAGGAGCA
260 GTAAGGTTTTGATTTGTTTTATTACACTAACCATGTCTCAAAGCCCTAGAGAAAATACAGGAGCA
7203209 C
325 C
7203210 AAAACTTACA
Statistics
Matches: 304, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
330 3 0.01
331 301 0.99
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (331 bp):
TACCCTATATCATAACCATTTCTATCCCTAAACATTTCTAAACCGACGCACAAACTAAAGAAACT
TGCTCAATCTTGAGTTAGTTCTTTAAAAGGACCCACAAGAGAGAATCGAGTGGTAAAAGAAAAAC
GAGAGGGCGAGATCAGAAGGGGGATCAGAAAAAGCCAAGAATATATCCCCGAGTGCAAACACAAG
TGTGAGTAGAGTGCAATATAAAATTTTATTTGGAGTGATCAAGTGAGGGTTTATGAGTGTGCTGG
TAAGGTTTTGATTTGTTTTATTACACTAACCATGTCTCAAAGCCCTAGAGAAAATACAGGAGCAC
CAATCC
Found at i:7206792 original size:15 final size:17
Alignment explanation
Indices: 7206755--7206797 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
7206745 TGATAATTAA
*
7206755 GAAATGAAAAGTAATTG
1 GAAATGGAAAGTAATTG
7206772 GAAATGGAAAG-AATT-
1 GAAATGGAAAGTAATTG
7206787 GAAATGGAAAG
1 GAAATGGAAAG
7206798 GAATGTTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 11 0.44
16 4 0.16
17 10 0.40
ACGTcount: A:0.53, C:0.00, G:0.28, T:0.19
Consensus pattern (17 bp):
GAAATGGAAAGTAATTG
Found at i:7216535 original size:15 final size:16
Alignment explanation
Indices: 7216495--7216537 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7216485 AATATTTTAA
*
7216495 TATAGTTATTTTCATC
1 TATAGTTATTATCATC
7216511 TATA-TATATTAT-ATC
1 TATAGT-TATTATCATC
7216526 TATAGTTATTAT
1 TATAGTTATTAT
7216538 GATGATAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (16 bp):
TATAGTTATTATCATC
Found at i:7221041 original size:15 final size:16
Alignment explanation
Indices: 7221001--7221043 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7220991 AATATTTTAA
*
7221001 TATAGTTATTTTCATC
1 TATAGTTATTATCATC
7221017 TATA-TATATTAT-ATC
1 TATAGT-TATTATCATC
7221032 TATAGTTATTAT
1 TATAGTTATTAT
7221044 GATGATAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (16 bp):
TATAGTTATTATCATC
Found at i:7231592 original size:24 final size:23
Alignment explanation
Indices: 7231549--7231601 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
7231539 AAAGGAGTTC
7231549 AAAAAGAAGAAAAGAAAACACAAG
1 AAAAAGAAGAAAAGAAAACA-AAG
* **
7231573 GAAAAGAAGAAAAGGCAACAAAG
1 AAAAAGAAGAAAAGAAAACAAAG
7231596 AAAAAG
1 AAAAAG
7231602 CTAAAGGAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.72, C:0.08, G:0.21, T:0.00
Consensus pattern (23 bp):
AAAAAGAAGAAAAGAAAACAAAG
Found at i:7232759 original size:36 final size:35
Alignment explanation
Indices: 7232667--7232776 Score: 123
Period size: 35 Copynumber: 3.1 Consensus size: 35
7232657 GGTGGTTATA
* ** * * *
7232667 ATAGGCATGAAATGGTGATAGAAGATGGTAATGGT
1 ATAGGCGTGAAATGGCAATGGAAGATGGTGATGTT
* *
7232702 ATAGGCGTGCAATGGTAATGGAAGATGGTGATGTT
1 ATAGGCGTGAAATGGCAATGGAAGATGGTGATGTT
*
7232737 ATAGGCGTGAAAATGGCAATGGATGATGGTGATGTT
1 ATAGGCGTG-AAATGGCAATGGAAGATGGTGATGTT
7232773 -TAGG
1 ATAGG
7232777 TAGTATCTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
35 42 0.65
36 23 0.35
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (35 bp):
ATAGGCGTGAAATGGCAATGGAAGATGGTGATGTT
Found at i:7236414 original size:21 final size:21
Alignment explanation
Indices: 7236375--7236415 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7236365 TAGAAGTCTT
*
7236375 TTCTTTCTCTTTTTGTTTTTC
1 TTCTTTCTCTTTTTCTTTTTC
7236396 TTCTTTCT-TTTTCTCTTTTT
1 TTCTTTCTCTTTT-TCTTTTT
7236416 GTTGTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (21 bp):
TTCTTTCTCTTTTTCTTTTTC
Found at i:7236906 original size:36 final size:35
Alignment explanation
Indices: 7236808--7236917 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
7236798 GATGGTTATA
* * *
7236808 ATAGGCGTGAAATGGTGATAGAAGATGGTAATGAT
1 ATAGGCGTGAAATGGTGATGGAAGATGGTGATGTT
* * *
7236843 ATAGGCATGCAATGGTAATGGAAGATGGTGATGTT
1 ATAGGCGTGAAATGGTGATGGAAGATGGTGATGTT
*
7236878 ATAGGCGTGAAAATAGTGATGGAAGATGGTGATGTT
1 ATAGGCGTG-AAATGGTGATGGAAGATGGTGATGTT
7236914 -TAGG
1 ATAGG
7236918 TAGTATCTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 41 0.64
36 23 0.36
ACGTcount: A:0.34, C:0.04, G:0.35, T:0.27
Consensus pattern (35 bp):
ATAGGCGTGAAATGGTGATGGAAGATGGTGATGTT
Found at i:7237273 original size:17 final size:18
Alignment explanation
Indices: 7237251--7237289 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
7237241 GTTGAAACCA
7237251 TTTTG-AAAATACATGAT
1 TTTTGTAAAATACATGAT
7237268 TTTTGATTAAAATACATGAT
1 TTTTG--TAAAATACATGAT
7237288 TT
1 TT
7237290 AAATGAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
20 14 0.74
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (18 bp):
TTTTGTAAAATACATGAT
Found at i:7245126 original size:22 final size:22
Alignment explanation
Indices: 7245093--7245134 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7245083 AAATATTAAC
*
7245093 TTTAATGTTTTATATTTTATTT
1 TTTAATGTTTTAAATTTTATTT
7245115 TTTATATG-TTTAAATTTTAT
1 TTTA-ATGTTTTAAATTTTAT
7245135 AAAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (22 bp):
TTTAATGTTTTAAATTTTATTT
Found at i:7250418 original size:24 final size:23
Alignment explanation
Indices: 7250369--7250418 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
7250359 AATAAAATGG
* *
7250369 AAAATAAAAAAAGATAAATTAGC
1 AAAATAAAAAAAGATAAATAAAC
7250392 AAAATAACAAAAAG-TAAAATAAAC
1 AAAATAA-AAAAAGAT-AAATAAAC
7250416 AAA
1 AAA
7250419 CAAATGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.14
Consensus pattern (23 bp):
AAAATAAAAAAAGATAAATAAAC
Found at i:7251951 original size:2 final size:2
Alignment explanation
Indices: 7251939--7251997 Score: 63
Period size: 2 Copynumber: 31.5 Consensus size: 2
7251929 TGTAAATAAC
* * *
7251939 AT AT AT A- AT AT AT AT AA AT AC AT AT AA AT -T AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7251978 AT A- AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
7251998 GTTATTTATG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
1 4 0.09
2 43 0.91
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7261368 original size:22 final size:20
Alignment explanation
Indices: 7261326--7261370 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
7261316 ATAAGAATGA
7261326 AAATAAAATGGAAAATAAAC
1 AAATAAAATGGAAAATAAAC
7261346 AAATATAAATGAGCAAAAT-AAC
1 AAATA-AAATG-G-AAAATAAAC
7261368 AAA
1 AAA
7261371 AAGTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 7 0.32
23 5 0.23
ACGTcount: A:0.69, C:0.07, G:0.09, T:0.16
Consensus pattern (20 bp):
AAATAAAATGGAAAATAAAC
Found at i:7261439 original size:13 final size:13
Alignment explanation
Indices: 7261421--7261453 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7261411 TAACATACAC
7261421 ATAAAAATACAAT-
1 ATAAAAATA-AATA
7261434 ATAAAAATAAATA
1 ATAAAAATAAATA
7261447 ATAAAAA
1 ATAAAAA
7261454 AAAGATAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
ATAAAAATAAATA
Found at i:7261723 original size:2 final size:2
Alignment explanation
Indices: 7261660--7261705 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
7261650 GAAATAAAAA
*
7261660 AT AT AT AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7261701 AT AT A
1 AT AT A
7261706 AAAAACGTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7262909 original size:20 final size:22
Alignment explanation
Indices: 7262884--7262923 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7262874 AGAAATAAGG
7262884 ATATGT-T-AATAACATATATA
1 ATATGTATAAATAACATATATA
7262904 ATATGTATAAATAACATATA
1 ATATGTATAAATAACATATA
7262924 AATTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (22 bp):
ATATGTATAAATAACATATATA
Found at i:7262943 original size:2 final size:2
Alignment explanation
Indices: 7262897--7262958 Score: 53
Period size: 2 Copynumber: 33.5 Consensus size: 2
7262887 TGTTAATAAC
* * * *
7262897 AT AT AT A- AT AT GT AT AA AT A- AC AT AT AA AT -T AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7262935 AT A- AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7262959 GTTATTTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
1 5 0.10
2 43 0.90
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7262943 original size:10 final size:12
Alignment explanation
Indices: 7262897--7262958 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 12
7262887 TGTTAATAAC
7262897 ATATATA-ATAT
1 ATATATATATAT
* * *
7262908 GTATAAATA-AC
1 ATATATATATAT
*
7262919 ATATAAAT-TAT
1 ATATATATATAT
7262930 ATAT-TATA-AT
1 ATATATATATAT
7262940 ATATATATATAT
1 ATATATATATAT
7262952 ATATATA
1 ATATATA
7262959 GTTATTTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
10 8 0.20
11 22 0.55
12 10 0.25
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (12 bp):
ATATATATATAT
Found at i:7265629 original size:7 final size:7
Alignment explanation
Indices: 7265617--7265766 Score: 84
Period size: 7 Copynumber: 21.4 Consensus size: 7
7265607 ATTTGTAATG
7265617 AACCCTA
1 AACCCTA
7265624 AACCCTA
1 AACCCTA
*
7265631 ATCCCTA
1 AACCCTA
*
7265638 AATCCTA
1 AACCCTA
* *
7265645 AGCCATA
1 AACCCTA
*
7265652 AACACTA
1 AACCCTA
7265659 AACCCTA
1 AACCCTA
**
7265666 AATTCTA
1 AACCCTA
*
7265673 ATCCCTA
1 AACCCTA
* *
7265680 AGCCATA
1 AACCCTA
*
7265687 AACACTA
1 AACCCTA
* *
7265694 ACCCCTG
1 AACCCTA
*
7265701 AGCCCTA
1 AACCCTA
* *
7265708 AATCATA
1 AACCCTA
* **
7265715 ATCTTTA
1 AACCCTA
7265722 AACCCTA
1 AACCCTA
**
7265729 AACTATA
1 AACCCTA
* *
7265736 AGCACTA
1 AACCCTA
7265743 AACCCTA
1 AACCCTA
*
7265750 AAACCTA
1 AACCCTA
7265757 AACCCTA
1 AACCCTA
7265764 AAC
1 AAC
7265767 TCAGTTATAT
Statistics
Matches: 99, Mismatches: 44, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
7 99 1.00
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:7267196 original size:11 final size:11
Alignment explanation
Indices: 7267176--7267251 Score: 80
Period size: 11 Copynumber: 6.6 Consensus size: 11
7267166 TAACCCATTT
7267176 TCGAGCTTGAA
1 TCGAGCTTGAA
*
7267187 TCGAGTTTGAA
1 TCGAGCTTGAA
**
7267198 TCGAGCTCAAAA
1 TCGAGCT-TGAA
7267210 TCGAGCTTGAA
1 TCGAGCTTGAA
* *
7267221 TCGAGCTCGAGTT
1 TCGAGCTTGA--A
7267234 TCGAGCTTGAA
1 TCGAGCTTGAA
7267245 TCGAGCT
1 TCGAGCT
7267252 CAAAATCGAG
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
11 34 0.65
12 9 0.17
13 9 0.17
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (11 bp):
TCGAGCTTGAA
Found at i:7267242 original size:24 final size:23
Alignment explanation
Indices: 7267185--7267261 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
7267175 TTCGAGCTTG
*
7267185 AATCGAGTTTGAATCGAGCTCAA
1 AATCGAGCTTGAATCGAGCTCAA
*
7267208 AATCGAGCTTGAATCGAGCTCGAG
1 AATCGAGCTTGAATCGAGCTC-AA
**
7267232 TTTCGAGCTTGAATCGAGCTCAA
1 AATCGAGCTTGAATCGAGCTCAA
7267255 AATCGAG
1 AATCGAG
7267262 TTTTAATTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
23 26 0.57
24 20 0.43
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (23 bp):
AATCGAGCTTGAATCGAGCTCAA
Found at i:7268155 original size:24 final size:26
Alignment explanation
Indices: 7268128--7268178 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7268118 AAGATGCTTA
* *
7268128 TTTCATATGT-TATA-ATATATTTAT
1 TTTCATATATATATATATATATATAT
7268152 TTTCATATATATATATATATATATAT
1 TTTCATATATATATATATATATATAT
7268178 T
1 T
7268179 ATATCTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
25 4 0.17
26 10 0.43
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (26 bp):
TTTCATATATATATATATATATATAT
Found at i:7268674 original size:25 final size:23
Alignment explanation
Indices: 7268632--7268679 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
7268622 TTCCATTTCA
*
7268632 TCATCAAGCATCATCAACATCAT
1 TCATCAAGCATCACCAACATCAT
*
7268655 TCATCAAGACCATCACCAACTTCAT
1 TCATCAAG--CATCACCAACATCAT
7268680 ACTTCTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
25 13 0.62
ACGTcount: A:0.38, C:0.33, G:0.04, T:0.25
Consensus pattern (23 bp):
TCATCAAGCATCACCAACATCAT
Found at i:7274277 original size:19 final size:20
Alignment explanation
Indices: 7274253--7274300 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7274243 GCTATTTTTG
* *
7274253 GTATCGATACTC-AGGGTGA
1 GTATCGATACCCAAGGGTCA
7274272 GTATCGATACCCAAGGGTCA
1 GTATCGATACCCAAGGGTCA
7274292 GTATCGATA
1 GTATCGATA
7274301 TTGTTGGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (20 bp):
GTATCGATACCCAAGGGTCA
Found at i:7275090 original size:14 final size:14
Alignment explanation
Indices: 7275071--7275102 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7275061 CGTTCGTGAA
7275071 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
7275085 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
7275099 CGTT
1 CGTT
7275103 TATGTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.28, T:0.50
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:7275119 original size:24 final size:24
Alignment explanation
Indices: 7275072--7275122 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7275062 GTTCGTGAAC
* *
7275072 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
* *
7275096 GTTCGTTTATGTTCATTCATTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
7275120 GTT
1 GTT
7275123 TAACCCAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.55
Consensus pattern (24 bp):
GTTCGGTTATGTTCATTCAGTTAT
Found at i:7275655 original size:23 final size:23
Alignment explanation
Indices: 7275622--7275675 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
7275612 TGGGGAAATG
*
7275622 TCGAGCCTGAATCGAGCTCAGAA
1 TCGAGCCTGAATCGAACTCAGAA
* *
7275645 TCGAGCTTGAATTGAACTCAGAA
1 TCGAGCCTGAATCGAACTCAGAA
*
7275668 TCGGGCCT
1 TCGAGCCT
7275676 TTTCAGTTCG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (23 bp):
TCGAGCCTGAATCGAACTCAGAA
Found at i:7275706 original size:16 final size:16
Alignment explanation
Indices: 7275685--7275715 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7275675 TTTTCAGTTC
7275685 GTGTTCATTTATGTTT
1 GTGTTCATTTATGTTT
*
7275701 GTGTTCGTTTATGTT
1 GTGTTCATTTATGTT
7275716 CGTTTATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.23, T:0.61
Consensus pattern (16 bp):
GTGTTCATTTATGTTT
Found at i:7275810 original size:16 final size:16
Alignment explanation
Indices: 7275786--7275828 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
7275776 CAAAAAAAAA
7275786 TGTTCGTTTATGTTCT
1 TGTTCGTTTATGTTCT
*
7275802 TGTTTGTTTATGTTCT
1 TGTTCGTTTATGTTCT
7275818 TGTTCGTTTAT
1 TGTTCGTTTAT
7275829 TTATTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.07, C:0.09, G:0.19, T:0.65
Consensus pattern (16 bp):
TGTTCGTTTATGTTCT
Found at i:7279473 original size:5 final size:5
Alignment explanation
Indices: 7279424--7279472 Score: 71
Period size: 5 Copynumber: 9.8 Consensus size: 5
7279414 ATATTGTTTA
* * *
7279424 TCCAA TCCAG TCCAG TCCAG TCCAG TCCAG TCCAG TCCAA TCCAA TCCA
1 TCCAG TCCAG TCCAG TCCAG TCCAG TCCAG TCCAG TCCAG TCCAG TCCA
7279473 AACAAAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.27, C:0.41, G:0.12, T:0.20
Consensus pattern (5 bp):
TCCAG
Found at i:7281837 original size:17 final size:16
Alignment explanation
Indices: 7281811--7281842 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7281801 TCGATTTGGG
7281811 TTGACTCGACTTGAAC
1 TTGACTCGACTTGAAC
7281827 TTGAGCTCGACTTGAA
1 TTGA-CTCGACTTGAA
7281843 ACCTTAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (16 bp):
TTGACTCGACTTGAAC
Found at i:7282348 original size:28 final size:29
Alignment explanation
Indices: 7282288--7282349 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
7282278 GTGAGCTTAA
* * *
7282288 CGAGCAATGAGCTTAACGAGTAGCGAGGT
1 CGAGTAATGAGCTTAAAGAGTAACGAGGT
*
7282317 -GAGTAATGAGCTTAAAGAGTAATGA-GT
1 CGAGTAATGAGCTTAAAGAGTAACGAGGT
7282344 CGAGTA
1 CGAGTA
7282350 TCAAATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 2 0.07
28 26 0.93
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.21
Consensus pattern (29 bp):
CGAGTAATGAGCTTAAAGAGTAACGAGGT
Found at i:7283942 original size:16 final size:16
Alignment explanation
Indices: 7283921--7283954 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7283911 GTATACAAAA
7283921 ATAAATTAT-TTTATTT
1 ATAAATTATATTT-TTT
7283937 ATAAATTATATTTTTT
1 ATAAATTATATTTTTT
7283953 AT
1 AT
7283955 TGCACCCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATAAATTATATTTTTT
Found at i:7283987 original size:20 final size:19
Alignment explanation
Indices: 7283962--7284004 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
7283952 TATTGCACCC
7283962 AACAAACTATCTA-ATAAAAA
1 AACAAA-TATC-ACATAAAAA
*
7283982 AACAAATTTCACATAAAAA
1 AACAAATATCACATAAAAA
7284001 AACA
1 AACA
7284005 TCAAGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 14 0.67
20 6 0.29
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (19 bp):
AACAAATATCACATAAAAA
Found at i:7304584 original size:19 final size:20
Alignment explanation
Indices: 7304560--7304607 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7304550 AATGATTTTC
* * *
7304560 TTTTGAAAGCTAAAATG-GA
1 TTTTGAAAACCAAAATGAAA
7304579 TTTTGAAAACCAAAATGAAA
1 TTTTGAAAACCAAAATGAAA
7304599 TTTTGAAAA
1 TTTTGAAAA
7304608 AGGATTTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (20 bp):
TTTTGAAAACCAAAATGAAA
Found at i:7306165 original size:20 final size:20
Alignment explanation
Indices: 7306136--7306190 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
7306126 CTTTGTATAG
*
7306136 TAGTACCGATACCATTGCCA
1 TAGTATCGATACCATTGCCA
7306156 TAGTATCGATACCATTGCCA
1 TAGTATCGATACCATTGCCA
7306176 TAGTATCGATACCAT
1 TAGTATCGATACCAT
7306191 CAGGCCCCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (20 bp):
TAGTATCGATACCATTGCCA
Found at i:7310048 original size:22 final size:23
Alignment explanation
Indices: 7310005--7310055 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
7309995 ATCCCGTTGA
*
7310005 TAATAATATTGAATTTTTTATAAT
1 TAATAATATT-AATTTTATATAAT
*
7310029 TAATAATATT-ATTTTATATATT
1 TAATAATATTAATTTTATATAAT
7310051 TAATA
1 TAATA
7310056 TCGATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.60
24 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TAATAATATTAATTTTATATAAT
Found at i:7314215 original size:23 final size:22
Alignment explanation
Indices: 7314178--7314222 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
7314168 AATTATAAAT
*
7314178 GAAGATGTTGGTGGTCTTGATG
1 GAAGATGTTGATGGTCTTGATG
*
7314200 GAAGATGGTTGATGGTGTTGATG
1 GAAGAT-GTTGATGGTCTTGATG
7314223 TTGATGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.20, C:0.02, G:0.42, T:0.36
Consensus pattern (22 bp):
GAAGATGTTGATGGTCTTGATG
Found at i:7314778 original size:50 final size:50
Alignment explanation
Indices: 7314694--7314790 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 50
7314684 GATGAAGATG
7314694 CATCTCCCTTGGCCGAATGGTGATATGCTTGTTCATCTTGGCGCCAAAGT
1 CATCTCCCTTGGCCGAATGGTGATATGCTTGTTCATCTTGGCGCCAAAGT
* * * * *
7314744 CATCTTCCTTGGCTGAATGGTGTTGTG-TTGGTTCATCTTGGTGCCAA
1 CATCTCCCTTGGCCGAATGGTGATATGCTT-GTTCATCTTGGCGCCAA
7314791 TTTCTTCATG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (50 bp):
CATCTCCCTTGGCCGAATGGTGATATGCTTGTTCATCTTGGCGCCAAAGT
Found at i:7320863 original size:20 final size:19
Alignment explanation
Indices: 7320840--7320878 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7320830 TGGTTTAGTC
7320840 AAGATTAATTGAGTTTGTTA
1 AAGATTAATT-AGTTTGTTA
**
7320860 AAGATTGGTTAGTTTGTTA
1 AAGATTAATTAGTTTGTTA
7320879 GATCAAGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (19 bp):
AAGATTAATTAGTTTGTTA
Found at i:7321905 original size:22 final size:22
Alignment explanation
Indices: 7321880--7321926 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
7321870 GTAGAAAAGA
7321880 GAAAAGAATAATCATTTCAAGT
1 GAAAAGAATAATCATTTCAAGT
*
7321902 GAAAATAATAATCATTTCAAGT
1 GAAAAGAATAATCATTTCAAGT
7321924 GAA
1 GAA
7321927 GGAGACATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.28
Consensus pattern (22 bp):
GAAAAGAATAATCATTTCAAGT
Found at i:7336264 original size:20 final size:21
Alignment explanation
Indices: 7336241--7336322 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
7336231 TTGGTGCAGA
*
7336241 GGGAATCGATACCCCCTGGA-
1 GGGAACCGATACCCCCTGGAG
* *
7336261 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCC--TGGAG
* **
7336284 GGGAACCGATTCCCCC-ACAG
1 GGGAACCGATACCCCCTGGAG
*
7336304 GGGAATCGATACCCCCTGG
1 GGGAACCGATACCCCCTGG
7336323 GGTTCTGGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
20 30 0.61
22 3 0.06
23 16 0.33
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (21 bp):
GGGAACCGATACCCCCTGGAG
Found at i:7338567 original size:16 final size:16
Alignment explanation
Indices: 7338546--7338578 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7338536 GAAGTGGTTT
7338546 TAAGTGTGTTTTAAAA
1 TAAGTGTGTTTTAAAA
7338562 TAAGTGTGTTTTAAAA
1 TAAGTGTGTTTTAAAA
7338578 T
1 T
7338579 GATAAATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (16 bp):
TAAGTGTGTTTTAAAA
Found at i:7342756 original size:17 final size:17
Alignment explanation
Indices: 7342734--7342766 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7342724 TAAGAGTTAA
7342734 TTTAATAAATGAACTAG
1 TTTAATAAATGAACTAG
*
7342751 TTTAATTAATGAACTA
1 TTTAATAAATGAACTA
7342767 CTTCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
TTTAATAAATGAACTAG
Found at i:7347666 original size:19 final size:19
Alignment explanation
Indices: 7347631--7347667 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7347621 TTTTTTTTCC
7347631 TTTTTTTATTTTTTTACTT
1 TTTTTTTATTTTTTTACTT
7347650 TTTTTTTATTTTTTTACT
1 TTTTTTTATTTTTTTACT
7347668 AACTCGAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTATTTTTTTACTT
Found at i:7348988 original size:17 final size:17
Alignment explanation
Indices: 7348966--7348998 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7348956 TAAGAGTTAA
7348966 TTTAATAAATGAACTAG
1 TTTAATAAATGAACTAG
*
7348983 TTTAATTAATGAACTA
1 TTTAATAAATGAACTA
7348999 CTTCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
TTTAATAAATGAACTAG
Found at i:7351599 original size:54 final size:54
Alignment explanation
Indices: 7351536--7352079 Score: 730
Period size: 54 Copynumber: 10.1 Consensus size: 54
7351526 CCAAATAGGA
* * * *
7351536 ACTAAGTGTGTAATTCACGGAATTCATCATATGTTGATGAATAACCATTTCAGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* * * **
7351590 ACTAAGTGTGCAATTCATGGAATTAATCATATGTTGATGAATAATTGTTTCGGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* * * * * *
7351644 ACTAAGTGTGCAATTGACGAAATTCATCATATGTTGATGAATAACCATTTCAGT
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* * ** *
7351698 GCTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATGGTCGTTTCGAC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* *
7351752 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATGACCATTTCGGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* *
7351806 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACTGTTTCGAC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* *
7351860 ACTAAGTGTGAAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTCGGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
7351914 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* * * *
7351968 ACTAAGTGTGCAATTCACGGAATTCATCATGTGTTGATGAATGACTGTTTCAGT
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
* ** * * * * *
7352022 ACTATGTGTGCAAACCACGAAATTCATAATATATTTATTAATGACCGTATT-GGC
1 ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGT-TTCGGC
7352076 ACTA
1 ACTA
7352080 CGGGTGCATT
Statistics
Matches: 429, Mismatches: 60, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
54 427 1.00
55 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (54 bp):
ACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATGACCGTTTCGGC
Found at i:7362432 original size:19 final size:20
Alignment explanation
Indices: 7362408--7362456 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
7362398 CGGCCAAGAG
*
7362408 CATGTATTTTCATT-AAAGT
1 CATGTATTTTCATTAAAAAT
7362427 CATGTATTTTCATTAAAAAT
1 CATGTATTTTCATTAAAAAT
7362447 CATGTATTTT
1 CATGTATTTT
7362457 TAAAGGGATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (20 bp):
CATGTATTTTCATTAAAAAT
Found at i:7363139 original size:23 final size:24
Alignment explanation
Indices: 7363111--7363164 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7363101 AAAATCCGCA
*
7363111 AAGAAAA-TCAAAGTACTC-AAAAG
1 AAGAAAATTCAAA-CACTCAAAAAG
*
7363134 AAGAAAATTCCAACACTCAAAAAG
1 AAGAAAATTCAAACACTCAAAAAG
7363158 AAGAAAA
1 AAGAAAA
7363165 GAAAAGCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.63, C:0.15, G:0.11, T:0.11
Consensus pattern (24 bp):
AAGAAAATTCAAACACTCAAAAAG
Found at i:7363177 original size:18 final size:17
Alignment explanation
Indices: 7363154--7363204 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
7363144 CAACACTCAA
7363154 AAAGAAGAAAAGAAAAGC
1 AAAGAAGAAAAGAAAA-C
7363172 AAAGAAAGAAATA-AAAAC
1 AAAG-AAGAAA-AGAAAAC
7363190 AAAGAA-AGAAAGAAA
1 AAAGAAGA-AAAGAAA
7363205 GTTGAAGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.07
17 7 0.24
18 9 0.31
19 10 0.34
20 1 0.03
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (17 bp):
AAAGAAGAAAAGAAAAC
Found at i:7366308 original size:19 final size:20
Alignment explanation
Indices: 7366284--7366334 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
7366274 CGGCCAAGAG
*
7366284 CATGTATTTTCATT-AAAGT
1 CATGTATTTTCATTAAAAAT
*
7366303 CATGTATTTTTATTAAAAAT
1 CATGTATTTTCATTAAAAAT
7366323 CATGTATTTTCA
1 CATGTATTTTCA
7366335 AAGGGATTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (20 bp):
CATGTATTTTCATTAAAAAT
Found at i:7368829 original size:47 final size:47
Alignment explanation
Indices: 7368763--7368856 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
7368753 GGCACTACAA
* * *
7368763 AAACAACCCATGTGTGTGACCAGCAAGGCAAGATGCTTGTCTCCACT
1 AAACAACCCATGTGAGTGACCAGCAAAGCAAGATGCTTGCCTCCACT
* * *
7368810 AAACAGCCCATGTGAGTGACCAGCAAAGCAAGGTGTTTGCCTCCACT
1 AAACAACCCATGTGAGTGACCAGCAAAGCAAGATGCTTGCCTCCACT
7368857 TAAGCATCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (47 bp):
AAACAACCCATGTGAGTGACCAGCAAAGCAAGATGCTTGCCTCCACT
Found at i:7376781 original size:13 final size:13
Alignment explanation
Indices: 7376763--7376788 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7376753 CCTTGGTGCT
7376763 GATTTAAATGATC
1 GATTTAAATGATC
7376776 GATTTAAATGATC
1 GATTTAAATGATC
7376789 ATGTCCTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
GATTTAAATGATC
Found at i:7378353 original size:13 final size:13
Alignment explanation
Indices: 7378335--7378367 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7378325 TCTTTGCAAT
7378335 TTCTTTTC-TCTTC
1 TTCTTTTCGT-TTC
7378348 TTCTTTTCGTTTC
1 TTCTTTTCGTTTC
7378361 TTCTTTT
1 TTCTTTT
7378368 TGAGTATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 18 0.95
14 1 0.05
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (13 bp):
TTCTTTTCGTTTC
Found at i:7379551 original size:19 final size:19
Alignment explanation
Indices: 7379505--7379552 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
7379495 TTTATCTAGC
*
7379505 CTTGAGCTCCTTCAGCTGA
1 CTTGAGCTTCTTCAGCTGA
7379524 CTTGAGCTTCTTCAGCTGA
1 CTTGAGCTTCTTCAGCTGA
7379543 CTTGAGCTTC
1 CTTGAGCTTC
7379553 CCTTAGTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (19 bp):
CTTGAGCTTCTTCAGCTGA
Found at i:7383832 original size:23 final size:21
Alignment explanation
Indices: 7383780--7383860 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
7383770 CTAGAACCCC
* **
7383780 AGGGGGTATCGATTCCCCTGT
1 AGGGGGAATCGATTCCCCTCA
*
7383801 GGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCGATTCCCC-TC-A
*
7383824 AGGGGGAATCGGTT-CCCTCA
1 AGGGGGAATCGATTCCCCTCA
* *
7383844 TGGGGGTATCGATTCCC
1 AGGGGGAATCGATTCCC
7383861 TCTGCACCAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 12 0.25
21 20 0.42
22 4 0.08
23 12 0.25
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (21 bp):
AGGGGGAATCGATTCCCCTCA
Found at i:7383854 original size:20 final size:20
Alignment explanation
Indices: 7383802--7383862 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
7383792 TTCCCCTGTG
*
7383802 GGGGGAATCGATTCCCCTTCAAA
1 GGGGGAATCGATT-CCC-TC-AT
*
7383825 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
7383845 GGGGGTATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
7383863 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 12 0.35
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:7391774 original size:13 final size:14
Alignment explanation
Indices: 7391751--7391780 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7391741 TGCAATTTCA
7391751 TTTATTTTCTTCTT
1 TTTATTTTCTTCTT
7391765 TTTA-TTTCTTCTT
1 TTTATTTTCTTCTT
7391778 TTT
1 TTT
7391781 GGGTGCTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTTCTTCTT
Found at i:7408143 original size:25 final size:25
Alignment explanation
Indices: 7408115--7408162 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7408105 TTTAAAATTT
7408115 CAAAGTACAAATTTTACAAATCATC
1 CAAAGTACAAATTTTACAAATCATC
** *
7408140 CAAAGTATTAATTTTATAAATCA
1 CAAAGTACAAATTTTACAAATCA
7408163 GACTACATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (25 bp):
CAAAGTACAAATTTTACAAATCATC
Found at i:7411612 original size:61 final size:61
Alignment explanation
Indices: 7411537--7411666 Score: 235
Period size: 61 Copynumber: 2.1 Consensus size: 61
7411527 TTTAACTTGA
*
7411537 CCTTGGAA-CCGAGACATAATACTAATCTAACCATAAACTTCAAATAAAATATTGATATAAC
1 CCTT-GAACCCGAGACATAATACTAATCTAACAATAAACTTCAAATAAAATATTGATATAAC
7411598 CCTTGAACCCGAGACATAATACTAATCTAACAATAAACTTCAAATAAAATATTGATATAAC
1 CCTTGAACCCGAGACATAATACTAATCTAACAATAAACTTCAAATAAAATATTGATATAAC
7411659 CCTTGAAC
1 CCTTGAAC
7411667 TTTAAATAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 3 0.04
61 64 0.96
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (61 bp):
CCTTGAACCCGAGACATAATACTAATCTAACAATAAACTTCAAATAAAATATTGATATAAC
Found at i:7411668 original size:31 final size:31
Alignment explanation
Indices: 7411572--7411677 Score: 90
Period size: 31 Copynumber: 3.5 Consensus size: 31
7411562 TCTAACCATA
7411572 AACTTCAAATAAAATATTGATATAACCCTTG
1 AACTTCAAATAAAATATTGATATAACCCTTG
* * * * * * * ** *
7411603 AAC-CCGAGACATAATACTAATCTAA-CAATA
1 AACTTC-AAATAAAATATTGATATAACCCTTG
7411633 AACTTCAAATAAAATATTGATATAACCCTTG
1 AACTTCAAATAAAATATTGATATAACCCTTG
*
7411664 AACTTTAAATAAAA
1 AACTTCAAATAAAA
7411678 ATATCAATTT
Statistics
Matches: 51, Mismatches: 21, Indels: 6
0.65 0.27 0.08
Matches are distributed among these distances:
30 19 0.37
31 32 0.63
ACGTcount: A:0.49, C:0.17, G:0.06, T:0.28
Consensus pattern (31 bp):
AACTTCAAATAAAATATTGATATAACCCTTG
Found at i:7413891 original size:35 final size:32
Alignment explanation
Indices: 7413852--7413926 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
7413842 TAATGTTGGT
* *
7413852 TATTAGGGGTTCAATTTTTTCTCTCTAATATTTAC
1 TATTAGGGCTT-AACTTTTT-TC-CTAATATTTAC
* *
7413887 TATTATGGGCTTAGCTTTTTTCCTAATATTTAT
1 TATTA-GGGCTTAACTTTTTTCCTAATATTTAC
7413920 TATTAGG
1 TATTAGG
7413927 AACCTACTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 2 0.06
33 15 0.43
34 2 0.06
35 11 0.31
36 5 0.14
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (32 bp):
TATTAGGGCTTAACTTTTTTCCTAATATTTAC
Found at i:7414077 original size:101 final size:101
Alignment explanation
Indices: 7413971--7414152 Score: 239
Period size: 101 Copynumber: 1.8 Consensus size: 101
7413961 ATAAGTGTCT
7413971 AATTTTTTGTC-AATATTTATTA-AAGGCCTAATTTTT-CAATACTTATTATTAG-GGTGTCTAA
1 AATTTTTT-TCTAATATTTATTATAAGGCC-AATTTTTCCAATACTTATTATTAGAGGT-TC-AA
7414032 -TTTTTCAATATTTGTTATTAATGGCATGCTTTAAAATTTA
62 CTTTTT-AATATTTGTTATTAATGGCATGCTTTAAAATTTA
* * ** *
7414072 AATTTTTTTCTAATATTTATTATGAGTCCAATTTTTCCGCTACTTTTTATTAGAGGTTCAACTTT
1 AATTTTTTTCTAATATTTATTATAAGGCCAATTTTTCCAATACTTATTATTAGAGGTTCAACTTT
7414137 TTAATATTTGTTATTA
66 TTAATATTTGTTATTA
7414153 TGAGCATATT
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
100 2 0.03
101 42 0.59
102 24 0.34
103 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (101 bp):
AATTTTTTTCTAATATTTATTATAAGGCCAATTTTTCCAATACTTATTATTAGAGGTTCAACTTT
TTAATATTTGTTATTAATGGCATGCTTTAAAATTTA
Found at i:7414179 original size:101 final size:100
Alignment explanation
Indices: 7413970--7414179 Score: 236
Period size: 101 Copynumber: 2.1 Consensus size: 100
7413960 TATAAGTGTC
7413970 TAATTTTTTGTCAATATTTATTAAAGGCCTAATTTTTCAATACTTATTATTAGGGTGTCTAATTT
1 TAATTTTTTGTCAATATTTATTAAAGGCCTAATTTTTCAATACTTATTATTAGGGTGTCTAATTT
7414035 TTCAATATTTGTTATTAATGGCATGCTTTAAAATT
66 TTCAATATTTGTTATTAATGGCATGCTTTAAAATT
* * ** *
7414070 TAAATTTTTT-TCTAATATTTATTATGAGTCC-AATTTTTCCGCTACTTTTTATTAGAGGT-TC-
1 T-AATTTTTTGTC-AATATTTATTA-AAGGCCTAATTTTT-CAATACTTATTATTAG-GGTGTCT
**
7414131 AACTTTTT-AATATTTGTTATT-ATGAGCATATTTTTAAAATT
61 AA-TTTTTCAATATTTGTTATTAATG-GCAT-GCTTTAAAATT
7414172 T-ATTTTTT
1 TAATTTTTT
7414180 AATATTTGTT
Statistics
Matches: 95, Mismatches: 7, Indels: 16
0.81 0.06 0.14
Matches are distributed among these distances:
100 13 0.14
101 45 0.47
102 34 0.36
103 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.53
Consensus pattern (100 bp):
TAATTTTTTGTCAATATTTATTAAAGGCCTAATTTTTCAATACTTATTATTAGGGTGTCTAATTT
TTCAATATTTGTTATTAATGGCATGCTTTAAAATT
Found at i:7415026 original size:63 final size:64
Alignment explanation
Indices: 7414920--7415047 Score: 224
Period size: 63 Copynumber: 2.0 Consensus size: 64
7414910 TAATTAATAT
7414920 AAATAAATATCTTTCACATTTATCAAAATGTGTTGATGTACTAATGTGAGCGAGTAGACAAGTTC
1 AAATAAATATC-TTCACATTTATCAAAATGTGTTGATGTACTAATGTGAGCGAGTAGACAAGTTC
7414985 AAATAAATATC-TCACATTTATCAAAATGTGTTGAT-TCACTAATGTGAGCGAGTAGACAAGTTC
1 AAATAAATATCTTCACATTTATCAAAATGTGTTGATGT-ACTAATGTGAGCGAGTAGACAAGTTC
7415048 TACGTACTAC
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.81
65 11 0.18
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (64 bp):
AAATAAATATCTTCACATTTATCAAAATGTGTTGATGTACTAATGTGAGCGAGTAGACAAGTTC
Found at i:7418668 original size:29 final size:29
Alignment explanation
Indices: 7418614--7418711 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 29
7418604 TGTATTGATG
* *
7418614 CATTCATGATTCTACATGGGACTTGATCCC
1 CATTCATGATTTTACATGGG-TTTGATCCC
*
7418644 CATTC-TGATTTTACATGAGGTTTGATCCT
1 CATTCATGATTTTACATG-GGTTTGATCCC
* * *
7418673 TA-TCATGATTTTACATGTGATTTGATTCC
1 CATTCATGATTTTACATG-GGTTTGATCCC
*
7418702 C-GTCATGATT
1 CATTCATGATT
7418712 CTGCATGAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 2 0.04
29 47 0.84
30 7 0.12
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.42
Consensus pattern (29 bp):
CATTCATGATTTTACATGGGTTTGATCCC
Found at i:7418711 original size:58 final size:58
Alignment explanation
Indices: 7418617--7418728 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
7418607 ATTGATGCAT
* * *
7418617 TCATGATTCTACATGGGACTTGATCCCCATTCTGATTTTACATGAGGTTTGATCCTTA
1 TCATGATTCTACATGGGACTTGATCCCCAGTCTGATTCTACATGAGATTTGATCCTTA
* * * * *
7418675 TCATGATTTTACATGTGATTTGATTCCC-GTCATGATTCTGCATGAGATTTGATC
1 TCATGATTCTACATGGGACTTGATCCCCAGTC-TGATTCTACATGAGATTTGATC
7418729 ATCTTCCTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 2 0.04
58 43 0.96
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (58 bp):
TCATGATTCTACATGGGACTTGATCCCCAGTCTGATTCTACATGAGATTTGATCCTTA
Found at i:7419018 original size:2 final size:2
Alignment explanation
Indices: 7418928--7419005 Score: 156
Period size: 2 Copynumber: 39.0 Consensus size: 2
7418918 ACATACAAAC
7418928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7418970 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7419006 GATTCACTAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7425675 original size:29 final size:29
Alignment explanation
Indices: 7425643--7425721 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 29
7425633 CCCCATCCTG
7425643 ATTCTGCATGGGATTTGATCTCTGCCCAA
1 ATTCTGCATGGGATTTGATCTCTGCCCAA
* * **
7425672 ATTCTGCATGAGATTT-AGTCT-TGTCCTG
1 ATTCTGCATGGGATTTGA-TCTCTGCCCAA
*
7425700 ATTTTGCATGGGATTTGATCTC
1 ATTCTGCATGGGATTTGATCTC
7425722 CGTCAGGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (29 bp):
ATTCTGCATGGGATTTGATCTCTGCCCAA
Found at i:7425714 original size:28 final size:29
Alignment explanation
Indices: 7425609--7425721 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
7425599 ATTTATGCAT
* * * **
7425609 TCCTGATTCTGTATGGGACTTGATCCCCA
1 TCCTGATTCTGCATGGGATTTGATCTCTG
7425638 TCCTGATTCTGCATGGGATTTGATCTCTG
1 TCCTGATTCTGCATGGGATTTGATCTCTG
* ** *
7425667 CCCAAATTCTGCATGAGATTT-AGTCT-TG
1 TCCTGATTCTGCATGGGATTTGA-TCTCTG
*
7425695 TCCTGATTTTGCATGGGATTTGATCTC
1 TCCTGATTCTGCATGGGATTTGATCTC
7425722 CGTCAGGTTT
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
28 22 0.33
29 45 0.67
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (29 bp):
TCCTGATTCTGCATGGGATTTGATCTCTG
Found at i:7426598 original size:44 final size:44
Alignment explanation
Indices: 7426496--7426660 Score: 224
Period size: 44 Copynumber: 3.8 Consensus size: 44
7426486 CGTTTGTCTA
* *
7426496 ACAAACGCCGCAATATGTGTTGAGATTTAGCGGC-GTTTGTCCT
1 ACAAACGCCGCAATAGGTGTTGAGATTTAGCGGCGGTTTTTCCT
* *
7426539 ACAAACGTCGTAATAGGTGTTGAGATTTAGCGGCGGTTTTTCCT
1 ACAAACGCCGCAATAGGTGTTGAGATTTAGCGGCGGTTTTTCCT
* * * *
7426583 ACAAACGCCGTAATAGGTGTTCAGATTTAGCGGCGCTTTTTCCC
1 ACAAACGCCGCAATAGGTGTTGAGATTTAGCGGCGGTTTTTCCT
* * *
7426627 ACAAACACTGCAATTGGTGTTGAGATTTAGCGGC
1 ACAAACGCCGCAATAGGTGTTGAGATTTAGCGGC
7426661 TTTTTTCTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
43 31 0.29
44 77 0.71
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (44 bp):
ACAAACGCCGCAATAGGTGTTGAGATTTAGCGGCGGTTTTTCCT
Found at i:7426787 original size:44 final size:43
Alignment explanation
Indices: 7426739--7426895 Score: 172
Period size: 44 Copynumber: 3.6 Consensus size: 43
7426729 TATACATCTA
* *
7426739 CATTTTTTGGATATAAACGCCGCTAAAGGTATGGTATATAGCGG
1 CATTTTTT-GATACAAACGCCGCAAAAGGTATGGTATATAGCGG
* * * * * *
7426783 CA-TTTTTCATATAAACGACGCAAAATGTCTGGTATATAGTGG
1 CATTTTTTGATACAAACGCCGCAAAAGGTATGGTATATAGCGG
* *
7426825 CGTTTTTATGATACAAACGCCGCAAAATGTATGGTATATAGCGG
1 CATTTTT-TGATACAAACGCCGCAAAAGGTATGGTATATAGCGG
* * *
7426869 CGTTTTTTGTTACAAACGCCGCTAAAG
1 CATTTTTTGATACAAACGCCGCAAAAG
7426896 AACACATAAT
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 30 0.31
43 26 0.27
44 40 0.42
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32
Consensus pattern (43 bp):
CATTTTTTGATACAAACGCCGCAAAAGGTATGGTATATAGCGG
Found at i:7426816 original size:42 final size:41
Alignment explanation
Indices: 7426749--7426875 Score: 164
Period size: 42 Copynumber: 3.0 Consensus size: 41
7426739 CATTTTTTGG
* * *
7426749 ATATAAACGCCGCTAAAGGTATGGTATATAGCGGCATTTTT
1 ATATAAACGCCGCAAAATGTATGGTATATAGCGGCGTTTTT
* * *
7426790 CATATAAACGACGCAAAATGTCTGGTATATAGTGGCGTTTTT
1 -ATATAAACGCCGCAAAATGTATGGTATATAGCGGCGTTTTT
7426832 ATGATACAAACGCCGCAAAATGTATGGTATATAGCGGCGTTTTT
1 AT-AT--AAACGCCGCAAAATGTATGGTATATAGCGGCGTTTTT
7426876 TGTTACAAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.03
42 37 0.51
44 34 0.47
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (41 bp):
ATATAAACGCCGCAAAATGTATGGTATATAGCGGCGTTTTT
Found at i:7427236 original size:21 final size:21
Alignment explanation
Indices: 7427212--7427271 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
7427202 CTACTGATAT
7427212 GCTGCTTCTCTCTGTGCTACC
1 GCTGCTTCTCTCTGTGCTACC
* * * *
7427233 GCTGCTTCTCTATGTGTTGCT
1 GCTGCTTCTCTCTGTGCTACC
*
7427254 GTTGCTTCTCTCTGTGCT
1 GCTGCTTCTCTCTGTGCT
7427272 TCCACTGATG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.03, C:0.30, G:0.22, T:0.45
Consensus pattern (21 bp):
GCTGCTTCTCTCTGTGCTACC
Found at i:7436051 original size:41 final size:41
Alignment explanation
Indices: 7436008--7436145 Score: 159
Period size: 41 Copynumber: 3.4 Consensus size: 41
7435998 ACATTTTTTT
* * * * *
7436008 ACAAACGCCGCTAAAGTACATGAATATTACGGCGTTTGGTT
1 ACAAACGCCACTAAAGTACAAGGATATTACGGCGTTTTGTC
* * *
7436049 ACAAACGCCACTAAAGTACAAGGCTATGACGGCGTTTTCTC
1 ACAAACGCCACTAAAGTACAAGGATATTACGGCGTTTTGTC
* * * *
7436090 ACAAACACCACTAAAGTACAGGGTTATTATGGCGTTTTGTC
1 ACAAACGCCACTAAAGTACAAGGATATTACGGCGTTTTGTC
*
7436131 ACAAACTCCACTAAA
1 ACAAACGCCACTAAA
7436146 TTAAGAGTAT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (41 bp):
ACAAACGCCACTAAAGTACAAGGATATTACGGCGTTTTGTC
Found at i:7436164 original size:41 final size:41
Alignment explanation
Indices: 7436008--7436167 Score: 119
Period size: 41 Copynumber: 3.9 Consensus size: 41
7435998 ACATTTTTTT
* * * * ** *
7436008 ACAAACGCCGCTAAAGTACATGA-ATATTACGGCGTTTGGTT
1 ACAAACACCACTAAAGTACA-GAGTTATTATGGCGTTTTCTC
* * * *
7436049 ACAAACGCCACTAAAGTACA-AGGCTATGACGGCGTTTTCTC
1 ACAAACACCACTAAAGTACAGA-GTTATTATGGCGTTTTCTC
* *
7436090 ACAAACACCACTAAAGTACAGGGTTATTATGGCGTTTTGTC
1 ACAAACACCACTAAAGTACAGAGTTATTATGGCGTTTTCTC
* * * *
7436131 ACAAACTCCACTAAATTA-AGAGTATTTTGTGGCGTTT
1 ACAAACACCACTAAAGTACAGAGT-TATTATGGCGTTT
7436168 AATCAAAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 4 0.04
41 93 0.95
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (41 bp):
ACAAACACCACTAAAGTACAGAGTTATTATGGCGTTTTCTC
Found at i:7437454 original size:22 final size:22
Alignment explanation
Indices: 7437426--7437492 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
7437416 CACGTTTTCA
*
7437426 AAAGCTATTATTTTTCTATTTG
1 AAAGCTATTATTTTTCTATTCG
*
7437448 AAAGCTATTATTTTCCTATTCG
1 AAAGCTATTATTTTTCTATTCG
*
7437470 AAAACTATTATTTTTCTATTCG
1 AAAGCTATTATTTTTCTATTCG
7437492 A
1 A
7437493 TAGAAGAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.49
Consensus pattern (22 bp):
AAAGCTATTATTTTTCTATTCG
Found at i:7438132 original size:120 final size:123
Alignment explanation
Indices: 7437935--7438155 Score: 286
Period size: 120 Copynumber: 1.8 Consensus size: 123
7437925 TATTTGCATA
* * * *
7437935 AAAATGCCACTATAAACAACCCTATTACGACATTTCTCCTAAAAATGCTGCTAAAGTACAACTCT
1 AAAATGCCACTATAAACAACCCTATTACAACATTTATCCTAAAAACGCCGCTAAAGTACAACTCT
*
7438000 ATTACGACGTTTG-TT-AAAA-TGTCACTATAAACAACCCTATTGTAGCATTTGTTGG
66 ATTACGACGTTTGTTTGAAAATTGCCACTATAAACAACCCTATTGTAGCATTTGTTGG
* * * * * * *
7438055 AAAATGCCACTATAAACAACCCTATTTCAATATTTATGCTATAAACGCCGCTACATTACCACTCT
1 AAAATGCCACTATAAACAACCCTATTACAACATTTATCCTAAAAACGCCGCTAAAGTACAACTCT
* **
7438120 ATTGCGGTGTTTGTTTGAAAATTGCCACTATAAACA
66 ATTACGACGTTTGTTTGAAAATTGCCACTATAAACA
7438156 GCTCTATTCT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
120 64 0.77
121 2 0.02
122 4 0.05
123 13 0.16
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.31
Consensus pattern (123 bp):
AAAATGCCACTATAAACAACCCTATTACAACATTTATCCTAAAAACGCCGCTAAAGTACAACTCT
ATTACGACGTTTGTTTGAAAATTGCCACTATAAACAACCCTATTGTAGCATTTGTTGG
Found at i:7438178 original size:83 final size:82
Alignment explanation
Indices: 7438047--7438228 Score: 213
Period size: 83 Copynumber: 2.2 Consensus size: 82
7438037 TATTGTAGCA
* * *
7438047 TTTGTTGGAAAATGCCACTATAAACAACCCTATTTCAATATTTATGCTATAAACGCCGCTACATT
1 TTTGTTGGAAAATGCCACTATAAACAACCCTATTTCAACATTTATGCTATAAAAGCCGCTAAATT
*
7438112 ACCACTCTATTGCGGTG
66 ACCACTCTATTGCGGCG
* * * ** *
7438129 TTTGTTTGAAAATTGCCACTATAAACAGCTCTA-TTCTGGCATTTCTGCTATAAAAGCCGCTAAA
1 TTTGTTGGAAAA-TGCCACTATAAACAACCCTATTTC-AACATTTATGCTATAAAAGCCGCTAAA
* **
7438193 TTACTACTCTATTTTGGCG
64 TTACCACTCTATTGCGGCG
7438212 TTTGTTGGAAAAATGCC
1 TTTGTTGG-AAAATGCC
7438229 GCTAAAGTAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
82 14 0.17
83 65 0.78
84 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (82 bp):
TTTGTTGGAAAATGCCACTATAAACAACCCTATTTCAACATTTATGCTATAAAAGCCGCTAAATT
ACCACTCTATTGCGGCG
Found at i:7438854 original size:17 final size:17
Alignment explanation
Indices: 7438832--7438866 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7438822 CCTAATAAAT
7438832 ATATTTTAATCTTCAAC
1 ATATTTTAATCTTCAAC
7438849 ATATTTTAATCTTCAAC
1 ATATTTTAATCTTCAAC
7438866 A
1 A
7438867 ACCATCTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATTTTAATCTTCAAC
Found at i:7442146 original size:20 final size:21
Alignment explanation
Indices: 7442108--7442147 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7442098 ATTAATTGAA
*
7442108 TTTTAAATTCAATTATATTAG
1 TTTTAAATTCAAGTATATTAG
*
7442129 TTTT-AATTCAAGTGTATTA
1 TTTTAAATTCAAGTATATTA
7442148 TGAGAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTTAAATTCAAGTATATTAG
Found at i:7449148 original size:16 final size:16
Alignment explanation
Indices: 7449127--7449161 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7449117 TCGAGAACTC
7449127 TATCATATAGAGCACA
1 TATCATATAGAGCACA
7449143 TATCATATAGAGCACA
1 TATCATATAGAGCACA
7449159 TAT
1 TAT
7449162 TGTTAATGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (16 bp):
TATCATATAGAGCACA
Found at i:7452568 original size:21 final size:20
Alignment explanation
Indices: 7452515--7452568 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
7452505 TGTGGGTTAG
**
7452515 GGATTTGGGTTTTAATTTGG
1 GGATTTGGGTTTTAATTTAA
***
7452535 GGATTTACATTTTCAATTTAA
1 GGATTTGGGTTTT-AATTTAA
7452556 GGATTTGGGTTTT
1 GGATTTGGGTTTT
7452569 TTATCCTCGG
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.20, C:0.04, G:0.26, T:0.50
Consensus pattern (20 bp):
GGATTTGGGTTTTAATTTAA
Found at i:7454589 original size:17 final size:17
Alignment explanation
Indices: 7454557--7454606 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7454547 TAAGAGTTAA
* *
7454557 TTTAATAAACGAACTAG
1 TTTAATGAATGAACTAG
*
7454574 TTTGATGAATGAACTAG
1 TTTAATGAATGAACTAG
*
7454591 TTTAATTAATGAACTA
1 TTTAATGAATGAACTA
7454607 CTTCCCTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (17 bp):
TTTAATGAATGAACTAG
Found at i:7464367 original size:303 final size:303
Alignment explanation
Indices: 7463820--7464428 Score: 1031
Period size: 303 Copynumber: 2.0 Consensus size: 303
7463810 TATAATAACC
* *
7463820 AAAATGCAAATTTTGAAAGTTTGATGGTCAAAGAATAAAACTTGGAAAATTGTAGGGAATTAAGT
1 AAAATGCAAAATTTGAAAGTTTGATGGTAAAAGAATAAAACTTGGAAAATTGTAGGGAATTAAGT
*
7463885 GAGAAATTTCCTAAAAAGAATTTCATTCTATAAATAAATGGTTTACTCTTGAGAGTGGAGTTTTA
66 GAGAAATTTCCTAAAAAGAATTTCATTCTATAAATAAATAGTTTACTCTTGAGAGTGGAGTTTTA
*
7463950 TAGAAATCATATTTTTGGATTTGGAATTTTAGTAAAGAAAAATTAGAAAAGGTTAAAGCCGATAA
131 TAGAAATCATATTTTTGGATTTAGAATTTTAGTAAAGAAAAATTAGAAAAGGTTAAAGCCGATAA
* * *
7464015 GGAATCAGTAATTTCAGATCGAATTGGAATTTAACAAAAATTTGAAGGATGTTATAAAATGGTT-
196 GAAATCAGTAATTTCAGATCGAAATGGAATTTAACAAAAATTTGAAGGATGTTATAAAATGATTG
*
7464079 AAAATATTATTTTTAATATTTTGAATCAAAGAAATTTGGTTTGG
261 AAAATATTA-TTTTAATATTTTGAATCAAAGAAATTTGGTTTAG
*
7464123 AAAATGCAAAATTTGAAAGTTTGATGGTAAAAGTATAAAACTTGGAAAATTGTAGGGAATTAAGT
1 AAAATGCAAAATTTGAAAGTTTGATGGTAAAAGAATAAAACTTGGAAAATTGTAGGGAATTAAGT
*
7464188 GAGAAATTTCCTAAAAATAATTTCATTCTATAAATAAATAGTTTACTCTTGAGAGTGGAGTTTTA
66 GAGAAATTTCCTAAAAAGAATTTCATTCTATAAATAAATAGTTTACTCTTGAGAGTGGAGTTTTA
* * *
7464253 TAGAAATCATATTTTTGGATTTAGAATTTTAGTAAAGAAAAATTGGAAATGGTTAAAGCCGGTAA
131 TAGAAATCATATTTTTGGATTTAGAATTTTAGTAAAGAAAAATTAGAAAAGGTTAAAGCCGATAA
* * * *
7464318 GAAATCTGTAATTTCATATCGAAATGGAATTTTACAAAATTTTGAAGGATGTTATAAAATGATTG
196 GAAATCAGTAATTTCAGATCGAAATGGAATTTAACAAAAATTTGAAGGATGTTATAAAATGATTG
* *
7464383 GAAATATTATTTTAATATTTTGAATCAGAGAAATTTGGTTTAG
261 AAAATATTATTTTAATATTTTGAATCAAAGAAATTTGGTTTAG
7464426 AAA
1 AAA
7464429 TGTGCAATTT
Statistics
Matches: 286, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
303 278 0.97
304 8 0.03
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.35
Consensus pattern (303 bp):
AAAATGCAAAATTTGAAAGTTTGATGGTAAAAGAATAAAACTTGGAAAATTGTAGGGAATTAAGT
GAGAAATTTCCTAAAAAGAATTTCATTCTATAAATAAATAGTTTACTCTTGAGAGTGGAGTTTTA
TAGAAATCATATTTTTGGATTTAGAATTTTAGTAAAGAAAAATTAGAAAAGGTTAAAGCCGATAA
GAAATCAGTAATTTCAGATCGAAATGGAATTTAACAAAAATTTGAAGGATGTTATAAAATGATTG
AAAATATTATTTTAATATTTTGAATCAAAGAAATTTGGTTTAG
Found at i:7466326 original size:45 final size:44
Alignment explanation
Indices: 7466276--7466395 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 44
7466266 ATAAACTGGC
*
7466276 AAATAAGAATACGGGCTTATGGG-TTAAAT-TATGAGTATATTAGTA
1 AAATAAGAATACGAGCTTATGGGATT-AATGTA-G-GTATATTAGTA
** *
7466321 AAATAAGCTTACGAGCTTATGGGATTAATGGTAGGTATATTGGTA
1 AAATAAGAATACGAGCTTATGGGATTAAT-GTAGGTATATTAGTA
** * *
7466366 AAATAAGCTTAAGAGCTTATGGGATAAATG
1 AAATAAGAATACGAGCTTATGGGATTAATG
7466396 GTAATTGATT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 1 0.02
45 60 0.91
46 3 0.05
47 2 0.03
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (44 bp):
AAATAAGAATACGAGCTTATGGGATTAATGTAGGTATATTAGTA
Found at i:7466396 original size:45 final size:45
Alignment explanation
Indices: 7466310--7466398 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7466300 TAAATTATGA
* *
7466310 GTATATTAGTAAAATAAGCTTACGAGCTTATGGGATTAATGGTAG
1 GTATATTAGTAAAATAAGCTTAAGAGCTTATGGGATAAATGGTAG
*
7466355 GTATATTGGTAAAATAAGCTTAAGAGCTTATGGGATAAATGGTA
1 GTATATTAGTAAAATAAGCTTAAGAGCTTATGGGATAAATGGTA
7466399 ATTGATTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.33
Consensus pattern (45 bp):
GTATATTAGTAAAATAAGCTTAAGAGCTTATGGGATAAATGGTAG
Found at i:7470449 original size:21 final size:21
Alignment explanation
Indices: 7470424--7470478 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7470414 TGGGGGTTAA
*
7470424 GGATTTGGGTTTTCCATTTAG
1 GGATTTGGGTTTTCAATTTAG
** *
7470445 GGATTTTTGCTTTCAATTTAG
1 GGATTTGGGTTTTCAATTTAG
*
7470466 GGATTTGGTTTTT
1 GGATTTGGGTTTT
7470479 TTAATCTCGG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.15, C:0.07, G:0.25, T:0.53
Consensus pattern (21 bp):
GGATTTGGGTTTTCAATTTAG
Found at i:7472412 original size:167 final size:170
Alignment explanation
Indices: 7472229--7472565 Score: 653
Period size: 167 Copynumber: 2.0 Consensus size: 170
7472219 TTATATGTCT
7472229 TTTTTTATAAAAAAAAATTAAGTTAAATTATGGTTGAAACTTATTACATACTTGAATGAATATGA
1 TTTTTTATAAAAAAAAATTAAGTTAAATTATGGTTGAAACTTATTACATACTTGAATGAATATGA
7472294 GAATGAAATTAGAAGATTAAAAAGTTTCGAAATC-TTAAAATGATGG-TATATTTT-GGGATAAA
66 GAATGAAATTAGAAGATTAAAAAGTTTCGAAATCTTTAAAATGATGGTTATATTTTGGGGATAAA
7472356 TTTGGAATGTTAAAAATTTTAAGGGCTAATTTAGAATGAG
131 TTTGGAATGTTAAAAATTTTAAGGGCTAATTTAGAATGAG
7472396 TTTTTTATAAAAAAAAATTAAGTTAAATTATGGTTGAAACTTATTACATACTTGAATGAATATGA
1 TTTTTTATAAAAAAAAATTAAGTTAAATTATGGTTGAAACTTATTACATACTTGAATGAATATGA
7472461 GAATGAAATTAGAAGATTAAAAAGTTTCGAAATCTTTAAAATGATGGTTATATTTTGGGGATAAA
66 GAATGAAATTAGAAGATTAAAAAGTTTCGAAATCTTTAAAATGATGGTTATATTTTGGGGATAAA
7472526 TTTGGAATGTTAAAAATTTTAAGGGCTAATTTAGAATGAG
131 TTTGGAATGTTAAAAATTTTAAGGGCTAATTTAGAATGAG
7472566 AGTCATATGT
Statistics
Matches: 167, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
167 99 0.59
168 12 0.07
169 8 0.05
170 48 0.29
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.37
Consensus pattern (170 bp):
TTTTTTATAAAAAAAAATTAAGTTAAATTATGGTTGAAACTTATTACATACTTGAATGAATATGA
GAATGAAATTAGAAGATTAAAAAGTTTCGAAATCTTTAAAATGATGGTTATATTTTGGGGATAAA
TTTGGAATGTTAAAAATTTTAAGGGCTAATTTAGAATGAG
Found at i:7484461 original size:67 final size:67
Alignment explanation
Indices: 7484353--7484486 Score: 268
Period size: 67 Copynumber: 2.0 Consensus size: 67
7484343 ATTAGAGGTG
7484353 TTAGCACTGACTGAGAAATATTAAATAAAATAATCAATCAAAACGATAATCCTGTTATGGTAATC
1 TTAGCACTGACTGAGAAATATTAAATAAAATAATCAATCAAAACGATAATCCTGTTATGGTAATC
7484418 CA
66 CA
7484420 TTAGCACTGACTGAGAAATATTAAATAAAATAATCAATCAAAACGATAATCCTGTTATGGTAATC
1 TTAGCACTGACTGAGAAATATTAAATAAAATAATCAATCAAAACGATAATCCTGTTATGGTAATC
7484485 CA
66 CA
7484487 CTGCCTTAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (67 bp):
TTAGCACTGACTGAGAAATATTAAATAAAATAATCAATCAAAACGATAATCCTGTTATGGTAATC
CA
Found at i:7487363 original size:22 final size:23
Alignment explanation
Indices: 7487338--7487382 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
7487328 AAACACCGAC
7487338 ATTTATATAGCTAT-TAACAAAT
1 ATTTATATAGCTATGTAACAAAT
*
7487360 ATTTATATAGCTATGTAATAAAT
1 ATTTATATAGCTATGTAACAAAT
7487383 CGTTCAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (23 bp):
ATTTATATAGCTATGTAACAAAT
Found at i:7496161 original size:16 final size:16
Alignment explanation
Indices: 7496140--7496173 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7496130 ACAGACCCTT
7496140 ATAAAATTTGACTACC
1 ATAAAATTTGACTACC
7496156 ATAAAATTTGACTACC
1 ATAAAATTTGACTACC
7496172 AT
1 AT
7496174 GGATCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (16 bp):
ATAAAATTTGACTACC
Found at i:7501764 original size:32 final size:32
Alignment explanation
Indices: 7501726--7501795 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
7501716 GTTGTGCACA
* * *
7501726 TCATCTTCAATCTCTTACACAACACACTCTTT
1 TCATCTTCAATCTATTACACAACAAACTCCTT
*
7501758 TGATCTTCAATCTATTACACAACAAACTCCTT
1 TCATCTTCAATCTATTACACAACAAACTCCTT
7501790 TCATCT
1 TCATCT
7501796 AACCAAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.31, G:0.01, T:0.37
Consensus pattern (32 bp):
TCATCTTCAATCTATTACACAACAAACTCCTT
Found at i:7504553 original size:78 final size:78
Alignment explanation
Indices: 7504462--7504610 Score: 273
Period size: 78 Copynumber: 1.9 Consensus size: 78
7504452 TTTTTTTTCG
*
7504462 AATTTGTTAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTCGGAA-TTTTAAAAATTTTAAT
1 AATTTGATAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTC-GAACTTTTAAAAATTTTAAT
7504526 ATTTTTTAAATTCA
65 ATTTTTTAAATTCA
7504540 AATTTGATAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTCGAACTTTTAAAAATTTTAATA
1 AATTTGATAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTCGAACTTTTAAAAATTTTAATA
7504605 TTTTTT
66 TTTTTT
7504611 TATTTTATTA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
77 3 0.04
78 66 0.96
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (78 bp):
AATTTGATAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTCGAACTTTTAAAAATTTTAATA
TTTTTTAAATTCA
Found at i:7505709 original size:68 final size:68
Alignment explanation
Indices: 7505577--7505708 Score: 212
Period size: 68 Copynumber: 2.0 Consensus size: 68
7505567 GTCGTTTTTT
* * *
7505577 TTCAAATTTGTTAAAAAATTCTAAAAGTTTGATATTATTTTTAATTTCGAAATTTTAATATTTTT
1 TTCAAATTTGTTAAAAAATTATAAAAGTTTGATATTAATTTTAACTTCGAAATTTTAATATTTTT
7505642 AAA
66 AAA
* *
7505645 TTCAAATTTGTTAAAAATTTATAAAAGTTTGATATTAATTTTAACTTCGAAA-TTTAATTTTTTT
1 TTCAAATTTGTTAAAAAATTATAAAAGTTTGATATTAATTTTAACTTCGAAATTTTAATATTTTT
7505709 TTATTTTATT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
67 11 0.19
68 48 0.81
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.51
Consensus pattern (68 bp):
TTCAAATTTGTTAAAAAATTATAAAAGTTTGATATTAATTTTAACTTCGAAATTTTAATATTTTT
AAA
Found at i:7509589 original size:18 final size:18
Alignment explanation
Indices: 7509566--7509601 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7509556 ACATAAAAAC
*
7509566 TCATCTTTAATTCTATGT
1 TCATCTTCAATTCTATGT
7509584 TCATCTTCAATTCTATGT
1 TCATCTTCAATTCTATGT
7509602 GGCGGAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (18 bp):
TCATCTTCAATTCTATGT
Found at i:7511472 original size:14 final size:14
Alignment explanation
Indices: 7511453--7511483 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7511443 TTTGGTACTG
7511453 TAACTATGTCTTTT
1 TAACTATGTCTTTT
*
7511467 TAACTATGTTTTTT
1 TAACTATGTCTTTT
7511481 TAA
1 TAA
7511484 GTTGTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.58
Consensus pattern (14 bp):
TAACTATGTCTTTT
Found at i:7511644 original size:20 final size:20
Alignment explanation
Indices: 7511613--7511665 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
7511603 TTCACGTATG
* *
7511613 AAGTACCGATACTATTATGAC
1 AAGTATCGATACTA-TATGAA
7511634 AA-TATCGATACTATATGAA
1 AAGTATCGATACTATATGAA
*
7511653 AAGTATTGATACT
1 AAGTATCGATACT
7511666 GTTCATGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.25
20 19 0.68
21 2 0.07
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (20 bp):
AAGTATCGATACTATATGAA
Done.