Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9158330
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 30 of 35
Found at i:7516609 original size:43 final size:46
Alignment explanation
Indices: 7516507--7516612 Score: 121
Period size: 50 Copynumber: 2.3 Consensus size: 46
7516497 AGGATTATAT
7516507 TTATTATTTTATTAGGAATTAAGGTTGAGTTAAAACATTATTTTTAGTTA
1 TTATTATTTTATTAGGAATTAA-G--GAGTTAAAACATTA-TTTTAGTTA
* *
7516557 TTATTATTTTATTAGGAATT-A-GAGTTAAGACA-TA-TTTAGCTTG
1 TTATTATTTTATTAGGAATTAAGGAGTTAAAACATTATTTTAG-TTA
7516600 TTATTATTTTATT
1 TTATTATTTTATT
7516613 CATTAGTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
42 5 0.09
43 15 0.28
44 2 0.04
45 10 0.19
49 1 0.02
50 20 0.38
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (46 bp):
TTATTATTTTATTAGGAATTAAGGAGTTAAAACATTATTTTAGTTA
Found at i:7520539 original size:66 final size:69
Alignment explanation
Indices: 7520469--7520618 Score: 189
Period size: 66 Copynumber: 2.2 Consensus size: 69
7520459 TTTGTCCGTT
* *
7520469 AATCGAACCGAAATTTAGTTGAAAGTTATTAACCGAATTAAATAAAT-AATT-TT-TTATTTAAC
1 AATCGAACCGAAATTTAGTTGAAAATTATTAACCGAATCAAATAAATCAATTATTGTTATTTAAC
7520531 CATG
66 CATG
* * * * * *
7520535 AATCGAACTGAAATATATTTGAAAATTATTAACCGAATCAAATTATTCAATTATTGTTCTTTAAC
1 AATCGAACCGAAATTTAGTTGAAAATTATTAACCGAATCAAATAAATCAATTATTGTTATTTAAC
*
7520600 CATT
66 CATG
*
7520604 AATTGAACCGAAATT
1 AATCGAACCGAAATT
7520619 ATTTGAACGT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
66 40 0.58
67 4 0.06
68 2 0.03
69 23 0.33
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (69 bp):
AATCGAACCGAAATTTAGTTGAAAATTATTAACCGAATCAAATAAATCAATTATTGTTATTTAAC
CATG
Found at i:7520767 original size:170 final size:167
Alignment explanation
Indices: 7520348--7521095 Score: 712
Period size: 170 Copynumber: 4.6 Consensus size: 167
7520338 TTATTTGTTT
* *
7520348 AAATAAATTATTTTTTCTTTAACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAATCGAAC
1 AAATAAATTATTTTTTC-TTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
** * * *
7520413 TGAATTAA-CAATTTTTTTTCTTTAGCCATTAATCGAACCAAAATTATTTGTCCGTTAATCGAAC
65 CAAATTAACCAATTTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAAC
* *
7520477 CGAAATTTAGTTGAAAGTTATTAACCGAATT---A-AAT-
130 CGAAATTTA-TT-AAAATTATTAACCAAATTAACATAATA
* * ** * *
7520512 AAAT-AATT-TTTTAT-TTAACCATGAATCGAACTGAAATATATTTGAAAATTATTAACCGAATC
1 AAATAAATTATTTTTTCTTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACC
** * * * * *
7520574 AAATTATTCAATTATTGTTCTTTAACCATTAATTGAACCGAAATTATTTGAACGTTAATCAAACC
66 AAATTAACCAATTTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACC
7520639 GAAATTTATTTGAAAATTATTAACCAAATTAACCA-AATA
131 GAAATTTA-TT-AAAATTATTAACCAAATTAA-CATAATA
* *
7520678 AAATAGATTATTTTTTCATTAACCATTAATCTAACCAAAATTTATTTGAAAATTATTAACCGAAC
1 AAATAAATTATTTTTTC-TTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
*
7520743 CAAATTAACCAATTTTTTTTCTTTAACCATTAATC-AACCCGAAATTATTTGACCGTTAATTGAA
65 CAAATTAACCAATTTTTTTTCTTTAACCATTAATCGAA-CCGAAATTATTTGACCGTTAATCGAA
* ** * *
7520807 CTGAAATTTATTAACCGAATGT-TT-TTC--TTTAACCATTAATCG
129 CCGAAATTTATTAA---AAT-TATTAACCAAATTAA-CA-TAAT-A
* * *
7520849 AACTGAAATTA-----T-TTGACCATTAATCGAACCAAAATTTATTTGACAATTATTAACCGAAC
1 AAAT-AAATTATTTTTTCTTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
* * * *
7520908 CAAATTAACCAAATTTTTTTCTTTAACCATTAATCAAACCGAAATTATTTGATCATTAATCGAAC
65 CAAATTAACCAATTTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAAC
*
7520973 C-AAA---A-T----TTATTAACCAAATTAACAGAATA
130 CGAAATTTATTAAAATTATTAACCAAATTAACATAATA
** * * *
7521002 AAATAAATTATTTTTTCTTTAACTGTTAATCGAACCCAAATTTATTTGAGAATTATTAACCGAAT
1 AAATAAATTATTTTTTC-TTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
* *
7521067 CGAATTAACCGAA-TTTTTTTCCTTAACCA
65 CAAATTAACC-AATTTTTTTTCTTTAACCA
7521096 ATGGTTTGGG
Statistics
Matches: 485, Mismatches: 67, Indels: 69
0.78 0.11 0.11
Matches are distributed among these distances:
152 7 0.01
153 6 0.01
154 4 0.01
155 2 0.00
156 4 0.01
157 1 0.00
159 65 0.13
160 48 0.10
161 77 0.16
162 5 0.01
163 4 0.01
164 7 0.01
165 106 0.22
166 6 0.01
167 4 0.01
168 14 0.03
169 4 0.01
170 107 0.22
171 8 0.02
172 6 0.01
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (167 bp):
AAATAAATTATTTTTTCTTAACCATTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACC
AAATTAACCAATTTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACC
GAAATTTATTAAAATTATTAACCAAATTAACATAATA
Found at i:7520838 original size:70 final size:70
Alignment explanation
Indices: 7520758--7520888 Score: 201
Period size: 70 Copynumber: 1.9 Consensus size: 70
7520748 TAACCAATTT
* * **
7520758 TTTTTCTTTAACCATTAATC-AACCCGAAATTATTTGACCGTTAATTGAACTGAAATTTATTAAC
1 TTTTTCTTTAACCATTAATCGAA-CCGAAATTATTTGACCATTAATCGAACCAAAATTTATTAAC
7520822 CGAATG
65 CGAATG
*
7520828 TTTTTCTTTAACCATTAATCGAACTGAAATTATTTGACCATTAATCGAACCAAAATTTATT
1 TTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCATTAATCGAACCAAAATTTATT
7520889 TGACAATTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 53 0.96
71 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (70 bp):
TTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCATTAATCGAACCAAAATTTATTAACC
GAATG
Found at i:7520870 original size:26 final size:27
Alignment explanation
Indices: 7520838--7520897 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
7520828 TTTTTCTTTA
**
7520838 ACCATTAATCGAACTGAAA-TTATTTG
1 ACCATTAATCGAACCAAAATTTATTTG
7520864 ACCATTAATCGAACCAAAATTTATTTG
1 ACCATTAATCGAACCAAAATTTATTTG
*
7520891 ACAATTA
1 ACCATTA
7520898 TTAACCGAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (27 bp):
ACCATTAATCGAACCAAAATTTATTTG
Found at i:7522098 original size:8 final size:8
Alignment explanation
Indices: 7522050--7522099 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
7522040 ATAATTATTT
7522050 TTTATATA
1 TTTATATA
*
7522058 TTAATATA
1 TTTATATA
7522066 -TTATATA
1 TTTATATA
*
7522073 TTTAAATA
1 TTTATATA
**
7522081 TCAATA-A
1 TTTATATA
7522088 TTTATATA
1 TTTATATA
7522096 TTTA
1 TTTA
7522100 AATAAACTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
7 11 0.34
8 21 0.66
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (8 bp):
TTTATATA
Found at i:7522204 original size:16 final size:16
Alignment explanation
Indices: 7522185--7522216 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7522175 TACTATAAGT
*
7522185 TTTATATTTTAAAAAA
1 TTTATAATTTAAAAAA
7522201 TTTATAATTTAAAAAA
1 TTTATAATTTAAAAAA
7522217 GTTAAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTATAATTTAAAAAA
Found at i:7524376 original size:76 final size:79
Alignment explanation
Indices: 7524290--7524441 Score: 195
Period size: 76 Copynumber: 1.9 Consensus size: 79
7524280 TAACTAAATA
*
7524290 TTATTTAATTAATTCAAATTAAATATA-C-ATT-AATGACTTATAATCTAAATTACA-ATCTTTA
1 TTATTTAATTAATTCAAATTAAATATATCAATTAAAAGACTTATAATCTAAATTACATAT-TTTA
*
7524351 ATGTTTACTTAAAAC
65 ATGCTTACTTAAAAC
* * * * *
7524366 TTATTTAATTATTTCGAATTATATATATCAATTAAAAGAGTTGTAATCTAAATTACATTATTTTA
1 TTATTTAATTAATTCAAATTAAATATATCAATTAAAAGACTTATAATCTAAATTACA-TATTTTA
7524431 ATGCTTACTTA
65 ATGCTTACTTA
7524442 CTATATTCGG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
76 24 0.38
77 1 0.02
78 3 0.05
79 20 0.31
80 14 0.22
81 2 0.03
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (79 bp):
TTATTTAATTAATTCAAATTAAATATATCAATTAAAAGACTTATAATCTAAATTACATATTTTAA
TGCTTACTTAAAAC
Found at i:7526990 original size:37 final size:36
Alignment explanation
Indices: 7526915--7526990 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
7526905 TTTTTATATT
*
7526915 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
7526951 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
7526988 TTT
1 TTT
7526991 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:7527172 original size:20 final size:20
Alignment explanation
Indices: 7527136--7527173 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7527126 ATCCTATTCC
**
7527136 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
7527156 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
7527174 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:7538081 original size:16 final size:16
Alignment explanation
Indices: 7538060--7538098 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7538050 ATTTTCCACA
*
7538060 AATCATTCGCACCATC
1 AATCATCCGCACCATC
7538076 AATCATCCGCACCATC
1 AATCATCCGCACCATC
7538092 AATCATC
1 AATCATC
7538099 TTTACCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.38, G:0.05, T:0.23
Consensus pattern (16 bp):
AATCATCCGCACCATC
Found at i:7540915 original size:16 final size:16
Alignment explanation
Indices: 7540894--7540932 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7540884 ATTTTCCACA
*
7540894 AATCATTCGCACCATC
1 AATCATCCGCACCATC
7540910 AATCATCCGCACCATC
1 AATCATCCGCACCATC
7540926 AATCATC
1 AATCATC
7540933 TTTACCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.38, G:0.05, T:0.23
Consensus pattern (16 bp):
AATCATCCGCACCATC
Found at i:7543749 original size:16 final size:16
Alignment explanation
Indices: 7543728--7543766 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7543718 ATTTTCCACA
*
7543728 AATCATTCGCACCATC
1 AATCATCCGCACCATC
7543744 AATCATCCGCACCATC
1 AATCATCCGCACCATC
7543760 AATCATC
1 AATCATC
7543767 TTTACCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.38, G:0.05, T:0.23
Consensus pattern (16 bp):
AATCATCCGCACCATC
Found at i:7572290 original size:45 final size:46
Alignment explanation
Indices: 7572241--7572328 Score: 151
Period size: 45 Copynumber: 1.9 Consensus size: 46
7572231 GAACATCGAA
* *
7572241 TGCATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
7572286 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
7572329 CAGGCTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (46 bp):
TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
Found at i:7582902 original size:234 final size:233
Alignment explanation
Indices: 7582477--7583123 Score: 910
Period size: 233 Copynumber: 2.8 Consensus size: 233
7582467 TTTCACGTGT
* * **
7582477 AGTCTTTCGAGCAAGATGATAAGTACTTCGGGCCATCCATAAGACCTAAAGG-AAGATGTTTTCA
1 AGTCTTTCGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCTTCAGGCAAGATGTTTTCA
* * *
7582541 CGTGTCTTTC-AAAAATTGAGAAAAATTTCTCATTTAAATCT-GAAAATTTAAATTATTGAAAAG
66 CGTGTCTTTCGAAAAA-TGAGAAAAGTTTCTCATTTAAATCTAAAAAAATTAAATT-TTGAAAAG
* * ** *
7582604 TAAGAAAAGTTTCTTACGTATTAAACTATTTCCAAAATTGGTAAATCCTTAAGGACATCAGTAAG
129 TAAGAAAAGTTTCTTACCTATTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGACACCAGTAAG
7582669 TCTTTCGAGCATGATACTTAAATCCAACGAGTCATTTGTA
194 TCTTTCGAGCATGATACTTAAATCCAACGAGTCATTTGTA
* * *
7582709 AGTCTTTCGAGCAAGATGATATGTCCTTTGGGCCATCAATAAGACCTTCAGGCAGGATGTTTTCA
1 AGTCTTTCGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCTTCAGGCAAGATGTTTTCA
* *
7582774 CGTTTCTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAAAATTAAACTTTTGAAAACT
66 CGTGTCTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAAAATTAAA-TTTTGAAAAGT
** * * * *
7582839 AAGAAAAAATTATTACCTAGTAAACTATTTCCAGAATTGGTAAGTCATTCGGGACACCAGTAAGT
130 AAGAAAAGTTTCTTACCTATTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGACACCAGTAAGT
**
7582904 CTTTCGAGCATGATACTTAAATCCTTCGAGTCATTTGTA
195 CTTTCGAGCATGATACTTAAATCCAACGAGTCATTTGTA
* * * * *
7582943 A-TCTTTTGAACAAGATGATAAGTCCTTTGAGCCATCCATACGACCTTCAGGCAAAATGTTTTCA
1 AGTCTTTCGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCTTCAGGCAAGATGTTTTCA
* **
7583007 CATGTCTTTCGAAAAATGAGAAAAGTTTCTCATTTAAA--TATGAAAATTGAAATTTTTGAAAAG
66 CGTGTCTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAAAATT-AAA-TTTTGAAAAG
7583070 TAAGAAAAGTTTCTTACCTATTAAACTATTTCCAAAATTGGTAAGTCCTTCGGG
129 TAAGAAAAGTTTCTTACCTATTAAACTATTTCCAAAATTGGTAAGTCCTTCGGG
7583124 CCATCCATAA
Statistics
Matches: 365, Mismatches: 45, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
231 8 0.02
232 106 0.29
233 135 0.37
234 114 0.31
235 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (233 bp):
AGTCTTTCGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCTTCAGGCAAGATGTTTTCA
CGTGTCTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAAAATTAAATTTTGAAAAGTA
AGAAAAGTTTCTTACCTATTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGACACCAGTAAGTC
TTTCGAGCATGATACTTAAATCCAACGAGTCATTTGTA
Found at i:7583234 original size:151 final size:149
Alignment explanation
Indices: 7582961--7583401 Score: 627
Period size: 151 Copynumber: 2.9 Consensus size: 149
7582951 AACAAGATGA
* * * * *
7582961 TAAGTCCTTTGAGCCATCCATACGACCTTCAGGCAAAATGTTTTCACATGTCTTTCGAAAAATGA
1 TAAGTCCTTCGAGCCATCCATAAGACCTTCAAGCCAGATGTTTTCACATGTCTTTCGAAAAATGA
*
7583026 GAAAAGTTTCTCATTTAAATATGAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTACCTAT
66 GAAAAGTTTCTCATTTAAATATGAAAATTGAAA-TTTTGAAAAGTAAGAAAAGTTTCTTACCTAG
7583091 TAAACTATTTCCAAAATTGG
130 TAAACTATTTCCAAAATTGG
* * * *
7583111 TAAGTCCTTCGGGCCATCCATAAGACCTTCAAACCAGATGATTTCAC-TCG-CATTTCAAAAAAT
1 TAAGTCCTTCGAGCCATCCATAAGACCTTCAAGCCAGATGTTTTCACAT-GTC-TTTCGAAAAAT
* *
7583174 GAGAAAAAGTTTCTCATTTGAATATGAAAATTGAAATTCTTGAAATGTAAGAAAAGTTTCTTACC
64 GAG-AAAAGTTTCTCATTTAAATATGAAAATTGAAATT-TTGAAAAGTAAGAAAAGTTTCTTACC
7583239 TAGTAAACTATTTCCAAAATTGG
127 TAGTAAACTATTTCCAAAATTGG
* * * *
7583262 TAAGTCCTTCGCGCCATTCATAAGACCTT-TAGGCAGGATGTTTTCACATGTCTTTCGAAAAATG
1 TAAGTCCTTCGAGCCATCCATAAGACCTTCAAGCCA-GATGTTTTCACATGTCTTTCGAAAAATG
* *
7583326 AGAAAAGATTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTA
65 AGAAAAGTTTCTCATTTAAATATGAAAATTG-AAATTTTGAAAAGTAAGAAAAGTTTCTTACCTA
*
7583391 GTAAAATATTT
129 GTAAACTATTT
7583402 TTAAAACTAG
Statistics
Matches: 259, Mismatches: 24, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
149 2 0.01
150 121 0.47
151 134 0.52
152 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (149 bp):
TAAGTCCTTCGAGCCATCCATAAGACCTTCAAGCCAGATGTTTTCACATGTCTTTCGAAAAATGA
GAAAAGTTTCTCATTTAAATATGAAAATTGAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTAGT
AAACTATTTCCAAAATTGG
Found at i:7583435 original size:150 final size:147
Alignment explanation
Indices: 7582961--7583435 Score: 578
Period size: 150 Copynumber: 3.1 Consensus size: 147
7582951 AACAAGATGA
* * * * *
7582961 TAAGTCCTTTGAGCCATCCATACGACCTTCAGGCAAAATGTTTTCACATGTCTTTCGAAAAATGA
1 TAAGTCCTTCG-GCAAT-CATAAGACCTTAAGGC-AGATGTTTTCACATGTCTTTCGAAAAATGA
* *
7583026 GAAAAGTTTCTCATTTAAATATGAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTACCTAT
63 GAAAAGTTTCTCATTTAAATATGAAAATTGAAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTAG
7583091 TAAACTATTTCCAAAATTGG
128 TAAACTATTTCCAAAATTGG
* ** * *
7583111 TAAGTCCTTCGGGCCATCCATAAGACCTTCAAACCAGATGATTTCAC-TCG-CATTTCAAAAAAT
1 TAAGTCCTTC-GGCAAT-CATAAGACCTT-AAGGCAGATGTTTTCACAT-GTC-TTTCGAAAAAT
* *
7583174 GAGAAAAAGTTTCTCATTTGAATATGAAAATTG-AAATTCTTGAAATGTAAGAAAAGTTTCTTAC
61 GAG-AAAAGTTTCTCATTTAAATATGAAAATTGAAAATT-TTGAAAAGTAAGAAAAGTTTCTTAC
7583238 CTAGTAAACTATTTCCAAAATTGG
124 CTAGTAAACTATTTCCAAAATTGG
* *
7583262 TAAGTCCTTCGCGCCATTCATAAGACCTTTAGGCAGGATGTTTTCACATGTCTTTCGAAAAATGA
1 TAAGTCCTTCG-G-CAATCATAAGACCTTAAGGCA-GATGTTTTCACATGTCTTTCGAAAAATGA
* *
7583327 GAAAAGATTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTAG
63 GAAAAGTTTCTCATTTAAATATGAAAATTGAAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTAG
* ** * *
7583392 TAAAATATTTTTAAAACTAG
128 TAAACTATTTCCAAAATTGG
*
7583412 TAAGTCTTTCAGGCAATCAATAAG
1 TAAGTCCTTC-GGCAATC-ATAAG
7583436 TCTTTCGAGT
Statistics
Matches: 281, Mismatches: 30, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
149 6 0.02
150 141 0.50
151 130 0.46
152 4 0.01
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (147 bp):
TAAGTCCTTCGGCAATCATAAGACCTTAAGGCAGATGTTTTCACATGTCTTTCGAAAAATGAGAA
AAGTTTCTCATTTAAATATGAAAATTGAAAATTTTGAAAAGTAAGAAAAGTTTCTTACCTAGTAA
ACTATTTCCAAAATTGG
Found at i:7583611 original size:3 final size:3
Alignment explanation
Indices: 7583603--7583637 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
7583593 ATCCCTATGT
7583603 TTA TTA TTA TTA TTA TTA TTA -TA TTTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
7583638 TTCAGGTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 26 0.87
4 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7584464 original size:13 final size:13
Alignment explanation
Indices: 7584442--7584472 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7584432 ATCATAAATC
*
7584442 TATGACACACATT
1 TATGAAACACATT
7584455 TATGAAACACATT
1 TATGAAACACATT
7584468 TATGA
1 TATGA
7584473 CGCGCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (13 bp):
TATGAAACACATT
Found at i:7584480 original size:13 final size:13
Alignment explanation
Indices: 7584464--7584493 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7584454 TTATGAAACA
7584464 CATTTATGACGCG
1 CATTTATGACGCG
*
7584477 CATTTATGACGCT
1 CATTTATGACGCG
7584490 CATT
1 CATT
7584494 GCGCGTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (13 bp):
CATTTATGACGCG
Found at i:7584580 original size:85 final size:85
Alignment explanation
Indices: 7584465--7584625 Score: 252
Period size: 85 Copynumber: 1.9 Consensus size: 85
7584455 TATGAAACAC
* *
7584465 ATTTATGACGCGCATTTATGACGCTCATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
1 ATTTATGACACGCATGTATGACGCTCATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
*
7584530 CACATATTTGTGTGTCATAA
66 CACACATTTGTGTGTCATAA
* * *
7584550 ATTTATGACACGCATGTATGAC-TTATATTGCGTGTCATTGAAGCCCCCGTCATAAATGAAGATG
1 ATTTATGACACGCATGTATGACGCT-CATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATG
7584614 ACACACATTTGT
65 ACACACATTTGT
7584626 ATGACTTACA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 1 0.01
85 68 0.99
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (85 bp):
ATTTATGACACGCATGTATGACGCTCATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
CACACATTTGTGTGTCATAA
Found at i:7584672 original size:2 final size:2
Alignment explanation
Indices: 7584665--7584689 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7584655 TTTCGTAAAT
7584665 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7584690 TGTAGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7602756 original size:22 final size:22
Alignment explanation
Indices: 7602724--7602765 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7602714 CCGAAGTAAC
*
7602724 ATTCATAATAAACATCATATAT
1 ATTCATAATAAAAATCATATAT
*
7602746 ATTCATGATAAAAATCATAT
1 ATTCATAATAAAAATCATAT
7602766 GTATAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (22 bp):
ATTCATAATAAAAATCATATAT
Found at i:7609022 original size:2 final size:2
Alignment explanation
Indices: 7609017--7609053 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7609007 TATATATATA
7609017 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7609054 TTGTTGCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:7612776 original size:26 final size:26
Alignment explanation
Indices: 7612743--7612803 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
7612733 ACTTACTTAT
*
7612743 TCTTTTATTAAATGAGATTTATTACC
1 TCTTTTATTAAACGAGATTTATTACC
*
7612769 TCTTTTATTAAACGATATTTATTACC
1 TCTTTTATTAAACGAGATTTATTACC
* *
7612795 ACTTCTATT
1 TCTTTTATT
7612804 CCAATTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.51
Consensus pattern (26 bp):
TCTTTTATTAAACGAGATTTATTACC
Found at i:7619529 original size:3 final size:3
Alignment explanation
Indices: 7619521--7619602 Score: 146
Period size: 3 Copynumber: 27.3 Consensus size: 3
7619511 TTAGACTATG
7619521 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
7619569 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTC TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7619603 GTTTAATTAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7623696 original size:27 final size:26
Alignment explanation
Indices: 7623644--7623713 Score: 63
Period size: 27 Copynumber: 2.6 Consensus size: 26
7623634 TTTTGCATTG
7623644 TATTCGCATTTGCATATCTACATCTATAA
1 TATT-GCATTTGCAT-TCTACATCTA-AA
* *
7623673 T-TTTCATTTGCATT-TACATCTCTACA
1 TATTGCATTTGCATTCTACA--TCTAAA
7623699 TATTGCATTTGCATT
1 TATTGCATTTGCATT
7623714 GCATGTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
25 4 0.11
26 3 0.09
27 25 0.71
28 2 0.06
29 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.07, T:0.47
Consensus pattern (26 bp):
TATTGCATTTGCATTCTACATCTAAA
Found at i:7631979 original size:16 final size:17
Alignment explanation
Indices: 7631958--7631995 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7631948 TGTTCAAAGT
7631958 AAACAA-AAATAAT-AAA
1 AAACAACAAA-AATGAAA
7631974 AAACAACAAAAATGAAA
1 AAACAACAAAAATGAAA
7631991 AAACA
1 AAACA
7631996 GGAATGCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.79, C:0.11, G:0.03, T:0.08
Consensus pattern (17 bp):
AAACAACAAAAATGAAA
Found at i:7636608 original size:12 final size:13
Alignment explanation
Indices: 7636591--7636623 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7636581 ATATATTTTA
7636591 TAGTTTTAAGA-G
1 TAGTTTTAAGAGG
7636603 TAGTTTTAAGAGG
1 TAGTTTTAAGAGG
7636616 TA-TTTTAA
1 TAGTTTTAA
7636624 AACTTGGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 17 0.85
13 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (13 bp):
TAGTTTTAAGAGG
Found at i:7637963 original size:15 final size:15
Alignment explanation
Indices: 7637943--7637973 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7637933 GAATTCTAAA
7637943 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
7637958 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
7637973 T
1 T
7637974 CTATTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:7639083 original size:28 final size:30
Alignment explanation
Indices: 7639029--7639085 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
7639019 TTTTGATCGT
*
7639029 TTATTTATTTTTAAAGGTATTTATGTTCAC
1 TTATTTATTTTTAAAGGTAATTATGTTCAC
7639059 TTATTT-TTTTT-AAGG-AATTAGTGTTCA
1 TTATTTATTTTTAAAGGTAATTA-TGTTCA
7639086 TTCGTATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 4 0.16
28 10 0.40
29 5 0.20
30 6 0.24
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.56
Consensus pattern (30 bp):
TTATTTATTTTTAAAGGTAATTATGTTCAC
Found at i:7646807 original size:12 final size:12
Alignment explanation
Indices: 7646790--7646814 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7646780 GTTACAGTCG
7646790 GAGGAGATGAAC
1 GAGGAGATGAAC
7646802 GAGGAGATGAAC
1 GAGGAGATGAAC
7646814 G
1 G
7646815 GGGAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.44, T:0.08
Consensus pattern (12 bp):
GAGGAGATGAAC
Found at i:7655721 original size:13 final size:13
Alignment explanation
Indices: 7655687--7655722 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7655677 GAATTAGTTT
7655687 GGGAAGATATCGA
1 GGGAAGATATCGA
*
7655700 GGAAAGATATCGA
1 GGGAAGATATCGA
*
7655713 GGGATGATAT
1 GGGAAGATAT
7655723 GAGTTCTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.36, T:0.19
Consensus pattern (13 bp):
GGGAAGATATCGA
Found at i:7661146 original size:90 final size:90
Alignment explanation
Indices: 7660990--7661153 Score: 283
Period size: 90 Copynumber: 1.8 Consensus size: 90
7660980 AACACACCCC
* * * *
7660990 TTTATAGCCAAGTTACCCTAATTATATTAGGGTTTTTATTATTTCAAATTATTTAAATCTATATT
1 TTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAGATT
7661055 TAATTAATTGGAATTTAATAATCCT
66 TAATTAATTGGAATTTAATAATCCT
*
7661080 TTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAGATT
1 TTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAGATT
7661145 TAATTAATT
66 TAATTAATT
7661154 AAAATTAAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 69 1.00
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (90 bp):
TTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAGATT
TAATTAATTGGAATTTAATAATCCT
Found at i:7662030 original size:22 final size:22
Alignment explanation
Indices: 7662004--7662070 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 22
7661994 AATAATAACA
7662004 ATTATGTCATTATATGGACTTT
1 ATTATGTCATTATATGGACTTT
* * *
7662026 ATTAT-TC-TAATAAT-AAC--A
1 ATTATGTCATTAT-ATGGACTTT
7662044 ATTATGTCATTATATGGACTTT
1 ATTATGTCATTATATGGACTTT
7662066 ATTAT
1 ATTAT
7662071 CTTTTAGTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 5 0.15
19 4 0.12
20 10 0.30
21 4 0.12
22 10 0.30
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (22 bp):
ATTATGTCATTATATGGACTTT
Found at i:7662045 original size:40 final size:40
Alignment explanation
Indices: 7661990--7662070 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7661980 ACTAAGGATC
7661990 TTCTAATAATAACAATTATGTCATTATATGGACTTTATTA
1 TTCTAATAATAACAATTATGTCATTATATGGACTTTATTA
7662030 TTCTAATAATAACAATTATGTCATTATATGGACTTTATTA
1 TTCTAATAATAACAATTATGTCATTATATGGACTTTATTA
7662070 T
1 T
7662071 CTTTTAGTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (40 bp):
TTCTAATAATAACAATTATGTCATTATATGGACTTTATTA
Found at i:7668177 original size:90 final size:90
Alignment explanation
Indices: 7668024--7668201 Score: 293
Period size: 90 Copynumber: 2.0 Consensus size: 90
7668014 CCTAACACAC
* * *
7668024 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAATTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAG
*
7668089 ATTTAATTAATTGAAATTTAATAAT
66 ATTTAATTAATTGAAATTAAATAAT
* * *
7668114 CCTTTTATATCCAAATTACCCTAATCATATTAGGGATTTTATTATTTTAAATTCATTAAATCTAG
1 CCTTTTATAGCCAAATTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAG
7668179 ATTTAATTAATTGAAATTAAATA
66 ATTTAATTAATTGAAATTAAATA
7668202 TTCGAGATTA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (90 bp):
CCTTTTATAGCCAAATTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAG
ATTTAATTAATTGAAATTAAATAAT
Found at i:7671125 original size:2 final size:2
Alignment explanation
Indices: 7671118--7671160 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7671108 TCTAAGCATG
7671118 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7671160 A
1 A
7671161 CATAGCAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7681859 original size:45 final size:46
Alignment explanation
Indices: 7681794--7681892 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 46
7681784 GATGTGTGAC
* * * * *
7681794 AATGTATAACGTTGTGTAAAA-GGAATGAAAGGATGGCATAAATTA
1 AATGTATAACATTGTATAAAAGGGAATGAAAGAATGCCATAAATAA
* * *
7681839 AATGTATAATATTGTATAAAAGGGCATTAAAGAATGCCATAAATAA
1 AATGTATAACATTGTATAAAAGGGAATGAAAGAATGCCATAAATAA
7681885 AATGTATA
1 AATGTATA
7681893 TGGGTGCATT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 18 0.40
46 27 0.60
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.28
Consensus pattern (46 bp):
AATGTATAACATTGTATAAAAGGGAATGAAAGAATGCCATAAATAA
Found at i:7685808 original size:19 final size:19
Alignment explanation
Indices: 7685780--7685820 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7685770 TGAAAAAATG
*
7685780 GTATCAGTACCGTAATAGA
1 GTATCAGTACCATAATAGA
* *
7685799 GTATCGGTACCATAATATA
1 GTATCAGTACCATAATAGA
7685818 GTA
1 GTA
7685821 GTATCGATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (19 bp):
GTATCAGTACCATAATAGA
Found at i:7686671 original size:54 final size:54
Alignment explanation
Indices: 7686140--7686651 Score: 684
Period size: 54 Copynumber: 9.5 Consensus size: 54
7686130 CATATACATT
* * *
7686140 TAAGTGTGCATTTCACGTAATTCATCCTATGTGGATGAATAACTGTTTCGACTC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* * * * *
7686194 TAAGTGTGCATTTCACGGAATTCATCCTATATAGATGAATAACCATTTAGGCAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* * * **
7686248 TAAGTGTTCATTTCACGGAATTCATCATACGTGGATGAATAATTGTTTCGACAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
*
7686302 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* * *
7686356 TAAGTGTGCATTTCATGGAATTCATCCTATGTGGATGAAGAATCGTTTC-AGCAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA-CAC
* * * *
7686410 TAAGTGTGCATTTCATGGAATTCATCTTATGTGGATGAATAACCGTTTTGGCAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* * ** * * * *
7686464 TAAATGTGTATTTCACAAAATTCATCCTATGTGGATTATTAACTGTTTCAACAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* * *
7686518 TAAGTGTGCAGTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTTGACAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
* ***
7686572 TAAATGTGCATTTCAATAAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
1 TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
7686626 TAAGTGTGCATTTCACGGAATTCATC
1 TAAGTGTGCATTTCACGGAATTCATC
7686652 ATGATTTGAT
Statistics
Matches: 392, Mismatches: 64, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
54 392 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (54 bp):
TAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACAC
Found at i:7687280 original size:45 final size:44
Alignment explanation
Indices: 7687126--7687287 Score: 130
Period size: 45 Copynumber: 3.6 Consensus size: 44
7687116 TTGTATAAAA
* * **
7687126 GGCATGAAAGGATGCCATAAATGAAATGTATAATAGCGT--ATAAAAG
1 GGCATGAAA-GATGCCATAAATGAAATGCAT-ATAG-GTGCAT-TATC
* * *
7687172 GGCATGAAATGATGACATAAATAAAATGCATATGGGTGCATTATC
1 GGCATGAAA-GATGCCATAAATGAAATGCATATAGGTGCATTATC
** * * * *
7687217 AACATTAAAGGATACCATAATTGAAATGCATATAGGTGCATTATT
1 GGCATGAAA-GATGCCATAAATGAAATGCATATAGGTGCATTATC
7687262 GGCATGAAAGAATGCCATAAATGAAA
1 GGCATGAAAG-ATGCCATAAATGAAA
7687288 ATGAATAATG
Statistics
Matches: 90, Mismatches: 23, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
44 3 0.03
45 58 0.64
46 29 0.32
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (44 bp):
GGCATGAAAGATGCCATAAATGAAATGCATATAGGTGCATTATC
Found at i:7688689 original size:55 final size:55
Alignment explanation
Indices: 7688312--7688679 Score: 569
Period size: 55 Copynumber: 6.7 Consensus size: 55
7688302 AACAATACGA
* * * * **
7688312 AAATTCATAAACTTATTACGAATTTCTTACTTTTGCACATAAAGTTCCCATGTAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
* *
7688367 AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCGCACAAAGTGCCCATACAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
* *
7688422 AAATTCATAAACTTATTATGCATTTCATAGTTTTGCACACAAAGTGCCCATACAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
*
7688477 AAATTCATAAACTTATTATGAATTTATTAGTTTTGCACACAAAGTGTCCC-TACAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG-CCCATACAG
* * *
7688532 AAATTCATAATCTTATTATGAATTTCTTAGTTTTGCACACAAAGTGTCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
*
7688587 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATA-GG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
7688641 AAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCAC
1 -AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCAC
7688680 GTATAGTGCC
Statistics
Matches: 289, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
54 4 0.01
55 282 0.98
56 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.36
Consensus pattern (55 bp):
AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAG
Found at i:7703251 original size:21 final size:21
Alignment explanation
Indices: 7703227--7703272 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
7703217 AATGCTTTGG
*
7703227 CAAAGCCCACACAATATCGAT
1 CAAAGCCCACAAAATATCGAT
*
7703248 CAAAGCCCATAAAATATCGAT
1 CAAAGCCCACAAAATATCGAT
7703269 CAAA
1 CAAA
7703273 TCCTTAACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.28, G:0.09, T:0.15
Consensus pattern (21 bp):
CAAAGCCCACAAAATATCGAT
Found at i:7704503 original size:90 final size:91
Alignment explanation
Indices: 7704398--7704573 Score: 291
Period size: 91 Copynumber: 1.9 Consensus size: 91
7704388 TAACACACCC
* *
7704398 TTTTATAGCCAAGTTACCCTAATCATATTA-GGATTTTATTATTTTAAATTAATTAAATCTATAT
1 TTTTATAGCAAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
* *
7704462 TTAATTAATTGGAATTTAATAATCCT
66 TTAATTAATTGAAATTAAATAATCCT
* *
7704488 TTTTATATCAAAGTTACCTTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
1 TTTTATAGCAAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
7704553 TTAATTAATTGAAATTAAATA
66 TTAATTAATTGAAATTAAATA
7704574 TTCGACATTA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 27 0.34
91 52 0.66
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.47
Consensus pattern (91 bp):
TTTTATAGCAAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
TTAATTAATTGAAATTAAATAATCCT
Found at i:7710555 original size:55 final size:55
Alignment explanation
Indices: 7710481--7710910 Score: 553
Period size: 55 Copynumber: 7.8 Consensus size: 55
7710471 ACCAATACGA
* * * * *
7710481 AAATGCATAAACTCATTATGAATTTCTTAGTTTTGCACATACAGTACATATACAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
* * *
7710536 AAATTCGTAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
* * * ** *
7710591 AAATTCATAAACCTATTATGAATTTCGTAGTTTTGCACACACAGTTCTGATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
*
7710646 AAA-TCTATAAACTTATTATGAATTTCTTAGTTTTGCACACATAGTGC-CAATACAG
1 AAATTC-ATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCAC-ATACAG
* *
7710701 AAATTCTTAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCA-ATATAG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
* * *
7710755 AAATTCATAAACTTATTATGAATTTCTTAATTTTGCACACAGAGTGCCCATAC-G
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
* * * *
7710809 AAAATTCATAAACTTATCATGAATTTCTTAATTTTGCACACACAGTGCCCATACGG
1 -AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
* * * *
7710865 AAATTCAAAAACTTATTATGAATTTCTTAGTATTGAACACATAGTG
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTG
7710911 TCATTCGGTA
Statistics
Matches: 332, Mismatches: 36, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
54 52 0.16
55 277 0.83
56 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (55 bp):
AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCACATACAG
Found at i:7710818 original size:219 final size:220
Alignment explanation
Indices: 7710488--7710910 Score: 661
Period size: 219 Copynumber: 1.9 Consensus size: 220
7710478 CGAAAATGCA
* *
7710488 TAAACTCATTATGAATTTCTTAGTTTTGCACATACAGTACATATACAGAAATTCGTAAACTTATT
1 TAAACTCATTATGAATTTCTTAGTTTTGCACACACAGTACATATACAGAAATTCATAAACTTATT
* * *
7710553 ATGAATTTCTTAGTTTTGCACACACAGTGCCCATACGGAAATTCATAAACCTATTATGAATTTCG
66 ATGAATTTCTTAATTTTGCACACACAGTGCCCATACGAAAATTCATAAACCTATCATGAATTTCG
* * ** * * *
7710618 TAGTTTTGCACACACAGTTCTGATACGGAAA-TCTATAAACTTATTATGAATTTCTTAGTTTTGC
131 TAATTTTGCACACACAGTGCCCATACGGAAATTC-AAAAACTTATTATGAATTTCTTAGTATTGA
7710682 ACACATAGTGCCAATACAGAAATTCT
195 ACACATAGTGCCAATACAGAAATTCT
* * *
7710708 TAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCA-ATATAGAAATTCATAAACTTATT
1 TAAACTCATTATGAATTTCTTAGTTTTGCACACACAGTACATATACAGAAATTCATAAACTTATT
* * *
7710772 ATGAATTTCTTAATTTTGCACACAGAGTGCCCATACGAAAATTCATAAACTTATCATGAATTTCT
66 ATGAATTTCTTAATTTTGCACACACAGTGCCCATACGAAAATTCATAAACCTATCATGAATTTCG
7710837 TAATTTTGCACACACAGTGCCCATACGGAAATTCAAAAACTTATTATGAATTTCTTAGTATTGAA
131 TAATTTTGCACACACAGTGCCCATACGGAAATTCAAAAACTTATTATGAATTTCTTAGTATTGAA
7710902 CACATAGTG
196 CACATAGTG
7710911 TCATTCGGTA
Statistics
Matches: 184, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
219 144 0.78
220 40 0.22
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (220 bp):
TAAACTCATTATGAATTTCTTAGTTTTGCACACACAGTACATATACAGAAATTCATAAACTTATT
ATGAATTTCTTAATTTTGCACACACAGTGCCCATACGAAAATTCATAAACCTATCATGAATTTCG
TAATTTTGCACACACAGTGCCCATACGGAAATTCAAAAACTTATTATGAATTTCTTAGTATTGAA
CACATAGTGCCAATACAGAAATTCT
Found at i:7711464 original size:18 final size:19
Alignment explanation
Indices: 7711422--7711469 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
7711412 GTAATCAATG
**
7711422 GTATCGATACCTTCCTCATA
1 GTATCGATACCCACCTCA-A
7711442 GTATCGATACCCACCTC-A
1 GTATCGATACCCACCTCAA
7711460 GTATCGATAC
1 GTATCGATAC
7711470 TAATTACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.29
Consensus pattern (19 bp):
GTATCGATACCCACCTCAA
Found at i:7713932 original size:49 final size:49
Alignment explanation
Indices: 7713860--7714184 Score: 391
Period size: 49 Copynumber: 6.6 Consensus size: 49
7713850 TATTATGCCG
* * * * * *
7713860 AAATGCACCGTTATGAATTTAACTTTCATTACTGACACTTTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* * *
7713909 AAATGAACAATTATGCATTTAACTTGCATAAGTGGCACATTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* * * * * * *
7713958 ACATGCACCATTATGGATTTAACTTACATTAGTGTCACCTTTATGCAAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* *
7714007 AAATGCACCACTATGAATTTAACTTGCATTAGTGGCACATTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* * * *
7714056 AAGTTCACCATTATGCATTTAACTTGTATTAGTGGCA-AGTTTCGGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACA-TTTCTGCCAA
* *
7714105 AAATGAACCATTATGCATTTAACTTACATTAGTGGCACATTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* **
7714154 AAATGTACCATTACACATTTAACTTGCATTA
1 AAATGCACCATTATGCATTTAACTTGCATTA
7714185 TAGAGCAGTT
Statistics
Matches: 231, Mismatches: 43, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
48 1 0.00
49 229 0.99
50 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (49 bp):
AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
Found at i:7718846 original size:49 final size:49
Alignment explanation
Indices: 7718791--7718885 Score: 156
Period size: 49 Copynumber: 1.9 Consensus size: 49
7718781 GGTAGCACCT
* *
7718791 TTTATGCCGAAATGCACTGTTATGCATT-TATCTTTCATTAGTGGTACCG
1 TTTATGCCGAAATGCACTGTTAAGCATTAAAT-TTTCATTAGTGGTACCG
7718840 TTTATGCCGAAATGCACTGTTAAGCATTAAATTTTCATTAGTGGTA
1 TTTATGCCGAAATGCACTGTTAAGCATTAAATTTTCATTAGTGGTA
7718886 TCTTTCTACC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
49 41 0.95
50 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (49 bp):
TTTATGCCGAAATGCACTGTTAAGCATTAAATTTTCATTAGTGGTACCG
Found at i:7718939 original size:48 final size:48
Alignment explanation
Indices: 7718810--7719217 Score: 340
Period size: 48 Copynumber: 8.4 Consensus size: 48
7718800 AAATGCACTG
* * * * * * * **
7718810 TTATGCATTTATCTTTCATTAGTGGTACCGTTTATGCCGAAATGCACTG
1 TTATGCATTTAACTTGCATTAGTGGCACC-TTTCTACCAAAAAGCACCA
* * * * * *
7718859 TTAAGCATTAAATTTTCATTAGTGGTATCTTTCTACCAAAACA-CACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAA-AGCACCA
* *
7718907 TTATGCATTTAACTTGTATTAGTGGCACCTTTCTACCAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAAGCACCA
* * *
7718955 TTATGCATTCAACTTGCATTAGTAGCACCTTGCTACCAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAA-GCACCA
* * ** * * * *
7719004 TTATGCATTCAACTCGCATTAGTGATACATTTATGCAAAAAATGGC-CCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAA--GCACCA
* * **
7719053 TTATGCATTTAACTTGAATTAGTGGCACATTTCTGTAAAAAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTC--T-ACCAAAAA-GCACCA
* *
7719105 TTATGCATTTAA-TTGCATTAGTGGCACATTTCTGCCAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAA-GCACCA
*
7719153 TTATGTATTTAACTTGCATTAGTGGCACCTTTCTGA--AAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCT-ACCAAAAA-GCACCA
* *
7719201 TTATACATTTAAGTTGC
1 TTATGCATTTAACTTGC
7719218 CAATTCATGA
Statistics
Matches: 296, Mismatches: 53, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
48 137 0.46
49 114 0.39
50 2 0.01
51 22 0.07
52 21 0.07
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (48 bp):
TTATGCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAAGCACCA
Found at i:7719016 original size:49 final size:49
Alignment explanation
Indices: 7718875--7719217 Score: 369
Period size: 48 Copynumber: 7.0 Consensus size: 49
7718865 ATTAAATTTT
*
7718875 CATTAGTGGTATC-TTTCTACCAAAACA--CACCATTATGCATTTAACTTG
1 CATTAGTGGCA-CATTTCTACCAAAA-ATGCACCATTATGCATTTAACTTG
* * *
7718923 TATTAGTGGCACCTTTCTACC-AAAATGCACCATTATGCATTCAACTTG
1 CATTAGTGGCACATTTCTACCAAAAATGCACCATTATGCATTTAACTTG
* * * * *
7718971 CATTAGTAGCACCTTGCTACCAAAAATGCACCATTATGCATTCAACTCG
1 CATTAGTGGCACATTTCTACCAAAAATGCACCATTATGCATTTAACTTG
** * * *
7719020 CATTAGTGATACATTTATGCAAAAAATGGC-CCATTATGCATTTAACTTG
1 CATTAGTGGCACATTTCTACCAAAAAT-GCACCATTATGCATTTAACTTG
* **
7719069 AATTAGTGGCACATTTCTGTAAAAAAAAATGCACCATTATGCATTTAA-TTG
1 CATTAGTGGCACATTTC--T-ACCAAAAATGCACCATTATGCATTTAACTTG
* *
7719120 CATTAGTGGCACATTTCTGCCAAAAATGCACCATTATGTATTTAACTTG
1 CATTAGTGGCACATTTCTACCAAAAATGCACCATTATGCATTTAACTTG
* * *
7719169 CATTAGTGGCACCTTTCTGA--AAAAATGCACCATTATACATTTAAGTTG
1 CATTAGTGGCACATTTCT-ACCAAAAATGCACCATTATGCATTTAACTTG
7719217 C
1 C
7719218 CAATTCATGA
Statistics
Matches: 251, Mismatches: 33, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
46 1 0.00
47 4 0.02
48 104 0.41
49 96 0.38
50 2 0.01
51 22 0.09
52 22 0.09
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (49 bp):
CATTAGTGGCACATTTCTACCAAAAATGCACCATTATGCATTTAACTTG
Found at i:7719898 original size:17 final size:17
Alignment explanation
Indices: 7719878--7719927 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7719868 TTTAGGGAAG
7719878 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* * *
7719895 TAGTTCATTCATCAAAG
1 TAGTTCATTAATTAAAC
*
7719912 TAGTTCATTTATTAAA
1 TAGTTCATTAATTAAA
7719928 ATAAATCTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:7724370 original size:20 final size:19
Alignment explanation
Indices: 7724325--7724371 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
7724315 TAAGAGCATT
*
7724325 TATTTTCATTAAAGTCATG
1 TATTTTCATTAAAATCATG
* *
7724344 TAGTTTCATTAAAAATTATG
1 TATTTTCATT-AAAATCATG
7724364 TATTTTCA
1 TATTTTCA
7724372 AAGCGATTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (19 bp):
TATTTTCATTAAAATCATG
Found at i:7729456 original size:20 final size:19
Alignment explanation
Indices: 7729416--7729459 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
7729406 GAGCATGTAA
* *
7729416 TTTCATTAAAGTCATGTAT
1 TTTCATTAAAATCATGCAT
7729435 TTTCATTAAAAATCATGCAT
1 TTTCATT-AAAATCATGCAT
7729455 TTTCA
1 TTTCA
7729460 AAGGTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (19 bp):
TTTCATTAAAATCATGCAT
Found at i:7734231 original size:19 final size:19
Alignment explanation
Indices: 7734207--7734252 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
7734197 GCACTCTATG
7734207 GAAGCTCACAAGATTCATA
1 GAAGCTCACAAGATTCATA
*
7734226 GAAGCTCACAAGATTCATG
1 GAAGCTCACAAGATTCATA
7734245 GAAGCTCA
1 GAAGCTCA
7734253 TGGAAGACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (19 bp):
GAAGCTCACAAGATTCATA
Found at i:7736782 original size:16 final size:19
Alignment explanation
Indices: 7736761--7736798 Score: 55
Period size: 16 Copynumber: 2.2 Consensus size: 19
7736751 GTTTATTCAA
7736761 TATTTT-ATA-ATATAT-T
1 TATTTTCATATATATATAT
7736777 TATTTTCATATATATATAT
1 TATTTTCATATATATATAT
7736796 TAT
1 TAT
7736799 ATCTATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 3 0.16
18 6 0.32
19 4 0.21
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTTTCATATATATATAT
Found at i:7737303 original size:15 final size:15
Alignment explanation
Indices: 7737266--7737296 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7737256 CACAATGCTA
7737266 CAACTCACCTATGGC
1 CAACTCACCTATGGC
7737281 CAACTCACCTATGGC
1 CAACTCACCTATGGC
7737296 C
1 C
7737297 GGTTCACACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.42, G:0.13, T:0.19
Consensus pattern (15 bp):
CAACTCACCTATGGC
Found at i:7738416 original size:18 final size:17
Alignment explanation
Indices: 7738389--7738422 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7738379 GCGTGCAAAG
7738389 CAAAAAGAAAAAGAAATT
1 CAAAAAG-AAAAGAAATT
*
7738407 CAAAAGGAAAAGAAAT
1 CAAAAAGAAAAGAAAT
7738423 ACTCATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.71, C:0.06, G:0.15, T:0.09
Consensus pattern (17 bp):
CAAAAAGAAAAGAAATT
Found at i:7738467 original size:6 final size:6
Alignment explanation
Indices: 7738458--7738490 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
7738448 AAAAACAAAC
7738458 AAAAGA AAAA-A AAAAGAA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAG-A AAAAGA AAAAGA AAA
7738491 GAAGAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.20
6 14 0.56
7 6 0.24
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:7738479 original size:18 final size:18
Alignment explanation
Indices: 7738458--7738493 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7738448 AAAAACAAAC
7738458 AAAAGAAAAAAAAAAGAA
1 AAAAGAAAAAAAAAAGAA
*
7738476 AAAAGAAAAAGAAAAGAA
1 AAAAGAAAAAAAAAAGAA
7738494 GAATTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAAAAAAGAA
Found at i:7741339 original size:2 final size:2
Alignment explanation
Indices: 7741328--7741370 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
7741318 TTTCATGTGT
*
7741328 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7741369 TA
1 TA
7741371 GTTATTATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7742722 original size:15 final size:15
Alignment explanation
Indices: 7742691--7742734 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
7742681 TGCAACCATC
7742691 TCATTTCTATCTTTATT
1 TCATTTCT-T-TTTATT
7742708 TCATTTCTTTTTATT
1 TCATTTCTTTTTATT
*
7742723 TCCATTACTTTT
1 T-CATTTCTTTT
7742735 ATTATTATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 10 0.40
17 8 0.32
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (15 bp):
TCATTTCTTTTTATT
Found at i:7743942 original size:19 final size:19
Alignment explanation
Indices: 7743920--7743958 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7743910 TGCTGGAAAT
7743920 TTCTTTATTTT-CGTTTTTC
1 TTCTTT-TTTTGCGTTTTTC
*
7743939 TTCTTTTTTTGTGTTTTTC
1 TTCTTTTTTTGCGTTTTTC
7743958 T
1 T
7743959 CAATTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.03, C:0.13, G:0.08, T:0.77
Consensus pattern (19 bp):
TTCTTTTTTTGCGTTTTTC
Found at i:7744024 original size:13 final size:13
Alignment explanation
Indices: 7744003--7744036 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7743993 CCTTATTATC
7744003 TTATTTTTGGTTT
1 TTATTTTTGGTTT
*
7744016 TT-TTTTTTGTTT
1 TTATTTTTGGTTT
7744028 TTATTTTTG
1 TTATTTTTG
7744037 CACGCCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.06, C:0.00, G:0.12, T:0.82
Consensus pattern (13 bp):
TTATTTTTGGTTT
Found at i:7749510 original size:21 final size:20
Alignment explanation
Indices: 7749464--7749510 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
7749454 AACCATAAAC
*
7749464 TTTTTTTTTTTTTTGAATAT
1 TTTTTTTTTTTTTTCAATAT
* *
7749484 TGTTTTTTTATTTTTCAA-AG
1 T-TTTTTTTTTTTTTCAATAT
7749504 TTTTTTT
1 TTTTTTT
7749511 AGTTGAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 6 0.26
20 3 0.13
21 14 0.61
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (20 bp):
TTTTTTTTTTTTTTCAATAT
Found at i:7750494 original size:20 final size:21
Alignment explanation
Indices: 7750460--7750499 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7750450 TTGAGCTAGT
7750460 GGAGCTAAAGTTGAGCTAAAC
1 GGAGCTAAAGTTGAGCTAAAC
*
7750481 GGAGCTAACG-TGAGCTAAA
1 GGAGCTAAAGTTGAGCTAAA
7750500 TTCAGCTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.38, C:0.15, G:0.30, T:0.17
Consensus pattern (21 bp):
GGAGCTAAAGTTGAGCTAAAC
Found at i:7752074 original size:15 final size:15
Alignment explanation
Indices: 7752032--7752068 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7752022 ATCATATCTC
*
7752032 AACTCATGTTATGTT
1 AACTCATCTTATGTT
*
7752047 TACTCATCTTATGTT
1 AACTCATCTTATGTT
7752062 AACTCAT
1 AACTCAT
7752069 TATATGCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (15 bp):
AACTCATCTTATGTT
Found at i:7755258 original size:20 final size:20
Alignment explanation
Indices: 7755233--7755296 Score: 128
Period size: 20 Copynumber: 3.2 Consensus size: 20
7755223 CTATGGCTAG
7755233 TTCACCTTAGAACAAGCTCA
1 TTCACCTTAGAACAAGCTCA
7755253 TTCACCTTAGAACAAGCTCA
1 TTCACCTTAGAACAAGCTCA
7755273 TTCACCTTAGAACAAGCTCA
1 TTCACCTTAGAACAAGCTCA
7755293 TTCA
1 TTCA
7755297 TGAAAAGTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.27
Consensus pattern (20 bp):
TTCACCTTAGAACAAGCTCA
Found at i:7755919 original size:61 final size:61
Alignment explanation
Indices: 7755808--7755922 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 61
7755798 GTAGTGCTAA
* * *
7755808 ACCTGCACTAAGCTTATGCCATAGTGCTAATCTGGACAATACACATAAGGTCGTGCCAACC
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCTGGACAATACACAGAAGGTCGTGCCAACC
* * * *
7755869 ACCTACACTAAGCTTACGCTATAGTGCTAATTTGTAC-ATGATACAGAAGGTCGT
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCTGGACAAT-ACACAGAAGGTCGT
7755923 ATCCACATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
60 2 0.04
61 44 0.96
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (61 bp):
ACCTACACTAAGCTTACGCCATAGTGCTAATCTGGACAATACACAGAAGGTCGTGCCAACC
Found at i:7760507 original size:19 final size:19
Alignment explanation
Indices: 7760483--7760521 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7760473 CAAGTCAAAG
7760483 GTGTCCTACATGTGGGAGA
1 GTGTCCTACATGTGGGAGA
7760502 GTGTCCTACATGTGGGAGA
1 GTGTCCTACATGTGGGAGA
7760521 G
1 G
7760522 CGCCCTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (19 bp):
GTGTCCTACATGTGGGAGA
Found at i:7760528 original size:19 final size:19
Alignment explanation
Indices: 7760487--7760530 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7760477 TCAAAGGTGT
* *
7760487 CCTACATGTGGGAGAGTGT
1 CCTACATGTGGGAGAGCGC
7760506 CCTACATGTGGGAGAGCGC
1 CCTACATGTGGGAGAGCGC
7760525 CCTACA
1 CCTACA
7760531 AGCATGTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (19 bp):
CCTACATGTGGGAGAGCGC
Found at i:7766918 original size:20 final size:20
Alignment explanation
Indices: 7766881--7766919 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7766871 AGATTGAGTG
* * *
7766881 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
7766901 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
7766920 AGTTTAGGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:7774023 original size:16 final size:15
Alignment explanation
Indices: 7773981--7774021 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
7773971 TAAGGTCTAA
7773981 CAGTCATTTTTACTT
1 CAGTCATTTTTACTT
7773996 CAGTCATTTTTACTT
1 CAGTCATTTTTACTT
7774011 CAGTCATTTTT
1 CAGTCATTTTT
7774022 TATAAACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.54
Consensus pattern (15 bp):
CAGTCATTTTTACTT
Found at i:7780285 original size:19 final size:19
Alignment explanation
Indices: 7780253--7780291 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7780243 CAAGTCAAAG
*
7780253 GTGTCCTACATGTGGCAGA
1 GTGTCATACATGTGGCAGA
* *
7780272 GTGTCATACGTGTGGGAGA
1 GTGTCATACATGTGGCAGA
7780291 G
1 G
7780292 CGCCCTACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (19 bp):
GTGTCATACATGTGGCAGA
Found at i:7780507 original size:94 final size:94
Alignment explanation
Indices: 7780346--7780535 Score: 380
Period size: 94 Copynumber: 2.0 Consensus size: 94
7780336 TCCAAGAGTG
7780346 CACAGAATGTGTGGCATTATGCACATGTGTGGAAATTCAACAATAGGCAGATTTGAATTCAAGCT
1 CACAGAATGTGTGGCATTATGCACATGTGTGGAAATTCAACAATAGGCAGATTTGAATTCAAGCT
7780411 AAAAGCAAATGTGTAATTCTTTTAATTAT
66 AAAAGCAAATGTGTAATTCTTTTAATTAT
7780440 CACAGAATGTGTGGCATTATGCACATGTGTGGAAATTCAACAATAGGCAGATTTGAATTCAAGCT
1 CACAGAATGTGTGGCATTATGCACATGTGTGGAAATTCAACAATAGGCAGATTTGAATTCAAGCT
7780505 AAAAGCAAATGTGTAATTCTTTTAATTAT
66 AAAAGCAAATGTGTAATTCTTTTAATTAT
7780534 CA
1 CA
7780536 ACTACTCCCT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (94 bp):
CACAGAATGTGTGGCATTATGCACATGTGTGGAAATTCAACAATAGGCAGATTTGAATTCAAGCT
AAAAGCAAATGTGTAATTCTTTTAATTAT
Found at i:7797966 original size:12 final size:12
Alignment explanation
Indices: 7797949--7797980 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7797939 CCATTGCAAC
7797949 AATCATGCATAT
1 AATCATGCATAT
*
7797961 AATCATGCGTAT
1 AATCATGCATAT
7797973 AATCATGC
1 AATCATGC
7797981 TTTAATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (12 bp):
AATCATGCATAT
Found at i:7800043 original size:54 final size:54
Alignment explanation
Indices: 7799975--7800550 Score: 782
Period size: 54 Copynumber: 10.7 Consensus size: 54
7799965 TACCAAATAA
* * * *
7799975 GCACTATGTCTGCAACCTAATAAATTCATAATGAGTTCATGAATTTTTGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
* *
7800029 GCACTATGTGTGCAACCTATGAAATTCATTATGAGTTTATGAATTTTCGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
*
7800083 GCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGAA-TTTCTGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTC-GTATTG
* * * *
7800137 GCACTATGTGTGAAACCTAAGAAATTCATAATAAGTTTATAAATTTTCGTATTA
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
* *
7800191 GCACTATGTGTGCAACCTAAGAAATTCGTAATAAGTTTATGAA-TTTCTGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTC-GTATTG
* * * *
7800245 GCACAATATGTGCAACCTAAGAAATTCGTAATAAGTTTATGAATTTTCGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
* * *
7800299 GCATTACGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
*
7800353 GAACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG-ATTTTCCGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT-CGTATTG
* * * * * *
7800407 ACATTATGTGTACAACCTAAGAAATTCATAATTAG-TTGTGAATTTACGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
* * * *
7800460 ACACTATGTATGCAACCAAAGAAATTCATAATGAGTTTATGATTTTTCGTATTG
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
* * * *
7800514 ACAATATGTGTACAACCTAAGAAATTCATAATTAGTT
1 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTT
7800551 GTGAATTACT
Statistics
Matches: 466, Mismatches: 49, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
53 53 0.11
54 405 0.87
55 8 0.02
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (54 bp):
GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTG
Found at i:7806521 original size:17 final size:17
Alignment explanation
Indices: 7806499--7806533 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7806489 TGAAATGTGA
7806499 AAAATCTAGGTAAAAGT
1 AAAATCTAGGTAAAAGT
7806516 AAAATCTAGGTAAAAGT
1 AAAATCTAGGTAAAAGT
7806533 A
1 A
7806534 CCAGTACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (17 bp):
AAAATCTAGGTAAAAGT
Found at i:7813127 original size:65 final size:64
Alignment explanation
Indices: 7812985--7813144 Score: 182
Period size: 65 Copynumber: 2.5 Consensus size: 64
7812975 TGCACTAAGA
* * *
7812985 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCTTGAGTGCATTGATGCATGGCT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCTTAAGTGCATCGATGCATGGAT
* * *
7813048 GCTGTATCGATGCATCAACTGCATTCGATGTTTTCATAAA-A-CTCTAAGTGCATCGATGCATAG
1 G-TGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATAGCT-TAAGTGCATCGATGCAT-G
*
7813111 TAT
62 GAT
* *
7813114 GTGCATCGGTGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
7813145 CAATTTATTC
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
63 1 0.01
64 27 0.33
65 47 0.58
66 6 0.07
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCTTAAGTGCATCGATGCATGGAT
Found at i:7813638 original size:4 final size:4
Alignment explanation
Indices: 7813625--7814081 Score: 765
Period size: 4 Copynumber: 114.8 Consensus size: 4
7813615 ACACAAATAT
* * * * *
7813625 ATAC AAAC ATAC ATAT ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
7813673 ATGC ATAC ATGC ATAC ATGC ATAT ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7813721 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
7813769 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7813817 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
7813865 ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7813913 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7813959 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7814007 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7814055 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
7814082 TATATATATA
Statistics
Matches: 425, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
2 2 0.00
4 423 1.00
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:7817999 original size:2 final size:2
Alignment explanation
Indices: 7817992--7818023 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7817982 AAAATATCAC
7817992 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7818024 ATTGGAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7824084 original size:24 final size:24
Alignment explanation
Indices: 7824057--7824105 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7824047 TGCGTGACAT
7824057 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
7824081 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
7824105 T
1 T
7824106 CAAGAAGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:7824472 original size:40 final size:40
Alignment explanation
Indices: 7824422--7824584 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 40
7824412 AGGACACTAA
*
7824422 GTGTAAATGGTGGGCACAACCTTATGTGTAATGCACTTCG
1 GTGTATATGGTGGGCACAACCTTATGTGTAATGCACTTCG
*
7824462 GTGTGTATGGTGGGCACGAA-CTTATGTGTAATGCACTTCG
1 GTGTATATGGTGGGCAC-AACCTTATGTGTAATGCACTTCG
*** * *
7824502 AAATATATAGTGGGCACGACCTTATGTGTAATGCACTTCG
1 GTGTATATGGTGGGCACAACCTTATGTGTAATGCACTTCG
* * *
7824542 GTGTATATGATGGTCACAACCTTATGTGT-A-GCACTACG
1 GTGTATATGGTGGGCACAACCTTATGTGTAATGCACTTCG
7824580 GTGTA
1 GTGTA
7824585 GATATTACCC
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
38 12 0.11
39 2 0.02
40 89 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (40 bp):
GTGTATATGGTGGGCACAACCTTATGTGTAATGCACTTCG
Found at i:7824652 original size:14 final size:14
Alignment explanation
Indices: 7824633--7824661 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7824623 TTACGCTATC
7824633 GTTTATGGTTTATT
1 GTTTATGGTTTATT
7824647 GTTTATGGTTTATT
1 GTTTATGGTTTATT
7824661 G
1 G
7824662 GTTAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.24, T:0.62
Consensus pattern (14 bp):
GTTTATGGTTTATT
Found at i:7831491 original size:40 final size:40
Alignment explanation
Indices: 7831388--7831480 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
7831378 TGCACTATAG
* *
7831388 TGTGTAAGGACACTA-AGTGTATATGGTGGGCATGACCTTA
1 TGTGTAATG-CACTACAGTATATATGGTGGGCATGACCTTA
* *
7831428 TGTGTAATGCACTTCAGTGTATATGGTGGGCATGACCTTA
1 TGTGTAATGCACTACAGTATATATGGTGGGCATGACCTTA
7831468 TGTGT-A-GCACTAC
1 TGTGTAATGCACTAC
7831481 GGTTCATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
38 6 0.12
39 5 0.10
40 38 0.78
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (40 bp):
TGTGTAATGCACTACAGTATATATGGTGGGCATGACCTTA
Found at i:7837682 original size:15 final size:16
Alignment explanation
Indices: 7837662--7837696 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7837652 CCATGTATGC
7837662 CAAAAAG-AAACAAAA
1 CAAAAAGAAAACAAAA
*
7837677 CAAAAAGAAAATAAAA
1 CAAAAAGAAAACAAAA
7837693 CAAA
1 CAAA
7837697 TAACACGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.80, C:0.11, G:0.06, T:0.03
Consensus pattern (16 bp):
CAAAAAGAAAACAAAA
Found at i:7849893 original size:94 final size:94
Alignment explanation
Indices: 7849732--7849983 Score: 335
Period size: 94 Copynumber: 2.7 Consensus size: 94
7849722 GAATCTTCAA
* * * * * * *
7849732 CTCGACTCCCTCGTGAAGAGGAACTAATCCTTTACTTCCTCATGAAAAGAAGTC-ATTTATTTTT
1 CTCGACTTCCTCATGAAGAGAAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATTT-TTGTT
* * *
7849796 ATTCCTGAAGAGGAGTTAATCTTTGTTGTT
65 ATTCCTGAAGAGGAATCAATATTTGTTGTT
** * *
7849826 CTCGACTTCCTCATGAAGTTAAACCAATCCTTGACTTCCTCGTGAAGAGAAGCCAATTTTTGTTA
1 CTCGACTTCCTCATGAAGAGAAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATTTTTGTTA
7849891 TTCCTGAAGAGGAATCAATATTTGTTGTT
66 TTCCTGAAGAGGAATCAATATTTGTTGTT
* * *
7849920 CTCGACTTCCTCGTGAAGAGGAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATCTTTGTT
1 CTCGACTTCCTCATGAAGAGAAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATTTTTGTT
7849984 GTTCTCGACT
Statistics
Matches: 136, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
94 132 0.97
95 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (94 bp):
CTCGACTTCCTCATGAAGAGAAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATTTTTGTTA
TTCCTGAAGAGGAATCAATATTTGTTGTT
Found at i:7849939 original size:38 final size:38
Alignment explanation
Indices: 7849895--7850008 Score: 113
Period size: 38 Copynumber: 3.2 Consensus size: 38
7849885 TTGTTATTCC
7849895 TGAAGAGGAATCAATATTTGTTGTTCTCGACTTCCTCG
1 TGAAGAGGAATCAATATTTGTTGTTCTCGACTTCCTCG
* **
7849933 TGAAGAGGAA-CCA-A----TCCTT-T--ACTTCCTCG
1 TGAAGAGGAATCAATATTTGTTGTTCTCGACTTCCTCG
*
7849962 TGAAGA-GAAGTCAATCTTTGTTGTTCTCGACTTCCTCG
1 TGAAGAGGAA-TCAATATTTGTTGTTCTCGACTTCCTCG
7850000 TGAAGAGGA
1 TGAAGAGGA
7850009 TCCAATCCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 21
0.67 0.08 0.24
Matches are distributed among these distances:
28 3 0.05
29 15 0.26
30 2 0.03
31 1 0.02
32 3 0.05
35 3 0.05
36 2 0.03
37 2 0.03
38 25 0.43
39 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (38 bp):
TGAAGAGGAATCAATATTTGTTGTTCTCGACTTCCTCG
Found at i:7849987 original size:67 final size:67
Alignment explanation
Indices: 7849895--7850050 Score: 242
Period size: 67 Copynumber: 2.3 Consensus size: 67
7849885 TTGTTATTCC
* * *
7849895 TGAAGAGGAA-TCAATATTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTTACTTCC
1 TGAAGA-GAAGTCAATATTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCATAAATTCC
7849959 TCG
65 TCG
* *
7849962 TGAAGAGAAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGATCCAATCCATAAATTCCT
1 TGAAGAGAAGTCAATATTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCATAAATTCCT
7850027 CG
66 CG
*
7850029 TGAAGAGAAGTCAATTTTTGTT
1 TGAAGAGAAGTCAATATTTGTT
7850051 ATTACTGAAG
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
66 3 0.04
67 79 0.96
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (67 bp):
TGAAGAGAAGTCAATATTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCATAAATTCCT
CG
Found at i:7850060 original size:94 final size:94
Alignment explanation
Indices: 7849962--7850635 Score: 883
Period size: 94 Copynumber: 7.2 Consensus size: 94
7849952 TACTTCCTCG
* * * * *
7849962 TGAAGAGAAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGATCCAATCCATAAATTCCT
1 TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
* *
7850027 CGTGAAGAGAAGTCAATTTTTGTTATTAC
66 CATGAAGAGAAGTCAATTTTTGTTATTCC
* * * *
7850056 TGAAGAGGAGTCAAAC--T-TTGTTCTCGACTTCCTCGTGAAGAGGAACAAATCATTTACTTCCT
1 TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
*
7850118 CATGAAGAGAAGAT-AATTTTTGTAATTCC
66 CATGAAGAGAAG-TCAATTTTTGTTATTCC
* * *
7850147 TGAGGAGGAGTTAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCATTGACTTCCT
1 TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
* * *
7850212 CACGAAGAGAAGTCAGTTTTTTTTATTCC
66 CATGAAGAGAAGTCAATTTTTGTTATTCC
* * *
7850241 TGAAGATGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAAGAACCAATCCTTGATTTCCT
1 TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
*
7850306 CATTAAGAGAAGTCAATTTTTGTTATTCC
66 CATGAAGAGAAGTCAATTTTTGTTATTCC
* * * *
7850335 TAAAGAGGAGTCAACCGTTT-TTGTTCTCGACTTCCTCATGAAGAGTAACCAATCCTTGACTTCC
1 TGAAGAGGAGTCAATC-TTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCC
* * *
7850399 TCCTTAAGAGAATTCAATTTTTGTTATTCC
65 TCATGAAGAGAAGTCAATTTTTGTTATTCC
* * * * *
7850429 TTAAGTGGAGTCAATTTTTGTTGTTCTCGACTTCCTTGTGAAGAGGAACTAATCCTTGACTTCCT
1 TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
*
7850494 CATGAAGAGAATTCAATTTTTGTTATTCC
66 CATGAAGAGAAGTCAATTTTTGTTATTCC
* * * * *
7850523 TGAAGAGGAGTAAAAT-TTTGTTGTTATCAACTTCTTCATGAAGAGGAACCAATCCTTGACTTCC
1 TGAAGAGGAGT-CAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCC
* * *
7850587 TCGTGAAGAGAATTCAATTTTGGTTATTCC
65 TCATGAAGAGAAGTCAATTTTTGTTATTCC
*
7850617 TAAAGAGGAGTCAATCTTT
1 TGAAGAGGAGTCAATCTTT
7850636 CAAATTCAAT
Statistics
Matches: 509, Mismatches: 62, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
91 76 0.15
92 2 0.00
93 8 0.02
94 417 0.82
95 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (94 bp):
TGAAGAGGAGTCAATCTTTGTTGTTCTCGACTTCCTCGTGAAGAGGAACCAATCCTTGACTTCCT
CATGAAGAGAAGTCAATTTTTGTTATTCC
Found at i:7850180 original size:252 final size:254
Alignment explanation
Indices: 7849732--7850226 Score: 672
Period size: 252 Copynumber: 2.0 Consensus size: 254
7849722 GAATCTTCAA
* * * * *
7849732 CTCGACTCCCTCGTGAAGAGGAACTAATCCTTTACTTCCTCATGAAAAGAAGTCATTTATTTTTA
1 CTCGACTCCCTCGTGAAGAGGAACCAATCCATAAATTCCTCATGAAAAGAAGTCATTTATTGTTA
* * * ** * *
7849797 TTCCTGAAGAGGAGTTAATCTTTGTTGTTCTCGACTTCCTCATGAAGTTAAACCAATCCTTGACT
66 TTACTGAAGAGGAGTCAAAC-TTGTTGTTCTCGACTTCCTCATGAAGAGAAACAAATCATTGACT
* * *
7849862 TCCTCGTGAAGAGAAGCCAATTTTTGTTATTCCTGAAGAGGAATCAATATTTGTTGTTCTCGACT
130 TCCTCATGAAGAGAAGACAATTTTTGTAATTCCTGAAGAGGAATCAATATTTGTTGTTCTCGACT
* * **
7849927 TCCTCGTGAAGAGGAACCAATCCTTTACTTCCTCGTGAAGAGAAGTCAATCTTTGTTGTT
195 TCCTCGTGAAGAGGAACCAATCATTGACTTCCTCACGAAGAGAAGTCAATCTTTGTTGTT
* * * *
7849987 CTCGACTTCCTCGTGAAGAGGATCCAATCCATAAATTCCTCGTGAAGAGAAGTCAATTT-TTGTT
1 CTCGACTCCCTCGTGAAGAGGAACCAATCCATAAATTCCTCATGAAAAGAAGTC-ATTTATTGTT
* * *
7850051 ATTACTGAAGAGGAGTCAAAC-T-TTGTTCTCGACTTCCTCGTGAAGAGGAACAAATCATTTACT
65 ATTACTGAAGAGGAGTCAAACTTGTTGTTCTCGACTTCCTCATGAAGAGAAACAAATCATTGACT
* * * * *
7850114 TCCTCATGAAGAGAAGATAATTTTTGTAATTCCTGAGGAGGAGTTAATCTTTGTTGTTCTCGACT
130 TCCTCATGAAGAGAAGACAATTTTTGTAATTCCTGAAGAGGAATCAATATTTGTTGTTCTCGACT
7850179 TCCTCGTGAAGAGGAACCAATCATTGACTTCCTCACGAAGAGAAGTCA
195 TCCTCGTGAAGAGGAACCAATCATTGACTTCCTCACGAAGAGAAGTCA
7850227 GTTTTTTTTA
Statistics
Matches: 208, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
252 135 0.65
253 1 0.00
255 68 0.33
256 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (254 bp):
CTCGACTCCCTCGTGAAGAGGAACCAATCCATAAATTCCTCATGAAAAGAAGTCATTTATTGTTA
TTACTGAAGAGGAGTCAAACTTGTTGTTCTCGACTTCCTCATGAAGAGAAACAAATCATTGACTT
CCTCATGAAGAGAAGACAATTTTTGTAATTCCTGAAGAGGAATCAATATTTGTTGTTCTCGACTT
CCTCGTGAAGAGGAACCAATCATTGACTTCCTCACGAAGAGAAGTCAATCTTTGTTGTT
Found at i:7850780 original size:82 final size:82
Alignment explanation
Indices: 7850677--7850852 Score: 253
Period size: 82 Copynumber: 2.1 Consensus size: 82
7850667 TGGATCAAAG
* * * * *
7850677 ACAGATCAAGTATGATCTCCCCTGAAAGAATAGTGAAACAGACCCGTCTTCGAAAACAAATCTGA
1 ACAGATCAAGTCTAATCTCCCCTGAAAGAAGAGTGAAACAGACCCGTCTTCCAAAACAAATATGA
*
7850742 ATACCCGAAAAAGAGGA
66 ATACCCGAAAAAGAAGA
* * * *
7850759 ATATATCAAGTCTAATCTCCCCTGAAAGAAGAGTGAAGCAGACCCGTCTTCCAAAACAGATATGA
1 ACAGATCAAGTCTAATCTCCCCTGAAAGAAGAGTGAAACAGACCCGTCTTCCAAAACAAATATGA
*
7850824 ATACCTGAAAAAGAAGA
66 ATACCCGAAAAAGAAGA
7850841 ACAGATCAAGTC
1 ACAGATCAAGTC
7850853 CGATTTGCTC
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (82 bp):
ACAGATCAAGTCTAATCTCCCCTGAAAGAAGAGTGAAACAGACCCGTCTTCCAAAACAAATATGA
ATACCCGAAAAAGAAGA
Found at i:7854632 original size:19 final size:21
Alignment explanation
Indices: 7854604--7854646 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
7854594 GAGGGGGAAC
*
7854604 GAAGATGAAAATG-AG-AAAT
1 GAAGAAGAAAATGAAGAAAAT
7854623 GAAGAAGAAAATGAAGAAAAT
1 GAAGAAGAAAATGAAGAAAAT
7854644 GAA
1 GAA
7854647 AAACCTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 2 0.10
21 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.26, T:0.12
Consensus pattern (21 bp):
GAAGAAGAAAATGAAGAAAAT
Found at i:7855959 original size:22 final size:22
Alignment explanation
Indices: 7855911--7855957 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
7855901 AGATATCTGG
* *
7855911 TTTATTATATATAATTTTTTAT
1 TTTATTATATATAAATATTTAT
*
7855933 TTTATTTTATATTAAATATTTAT
1 TTTATTATATA-TAAATATTTAT
7855956 TT
1 TT
7855958 ATAATTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTATTATATATAAATATTTAT
Found at i:7856068 original size:22 final size:22
Alignment explanation
Indices: 7856043--7856098 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
7856033 TTTTAATTTC
7856043 TTAAATTATTTCACATTAACAT
1 TTAAATTATTTCACATTAACAT
7856065 TTAAATTATTTCACATTAACAT
1 TTAAATTATTTCACATTAACAT
7856087 TTAAATTATTTC
1 TTAAATTATTTC
7856099 TTAAAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAAATTATTTCACATTAACAT
Found at i:7856961 original size:21 final size:21
Alignment explanation
Indices: 7856937--7857003 Score: 134
Period size: 21 Copynumber: 3.2 Consensus size: 21
7856927 TACTTCTTTT
7856937 GCATTTGAATGTAATTTTCAA
1 GCATTTGAATGTAATTTTCAA
7856958 GCATTTGAATGTAATTTTCAA
1 GCATTTGAATGTAATTTTCAA
7856979 GCATTTGAATGTAATTTTCAA
1 GCATTTGAATGTAATTTTCAA
7857000 GCAT
1 GCAT
7857004 AAAAAAATGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (21 bp):
GCATTTGAATGTAATTTTCAA
Found at i:7857236 original size:52 final size:52
Alignment explanation
Indices: 7857179--7857288 Score: 193
Period size: 52 Copynumber: 2.1 Consensus size: 52
7857169 AATATTACTT
** *
7857179 TGTAATCATCTTAATTCTCAAGCTATTAAAAAATGTTATGGTTAGTAAATAA
1 TGTAATCATCCCAATTCTCAAGCTATTAAAAAATGTTATGGTTAGTAAAGAA
7857231 TGTAATCATCCCAATTCTCAAGCTATTAAAAAATGTTATGGTTAGTAAAGAA
1 TGTAATCATCCCAATTCTCAAGCTATTAAAAAATGTTATGGTTAGTAAAGAA
7857283 TGTAAT
1 TGTAAT
7857289 AATGACATGC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (52 bp):
TGTAATCATCCCAATTCTCAAGCTATTAAAAAATGTTATGGTTAGTAAAGAA
Found at i:7869441 original size:4 final size:4
Alignment explanation
Indices: 7869432--7869567 Score: 236
Period size: 4 Copynumber: 34.0 Consensus size: 4
7869422 ATGTAAGAAT
7869432 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7869480 TATA TATG TATG TATG TATG TATG TATG TATG TATG TATA TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7869528 TATA TATG TATG TATG TATG TATG TATG TATA TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7869568 AAATGATGTA
Statistics
Matches: 124, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 124 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:7869888 original size:25 final size:25
Alignment explanation
Indices: 7869860--7869909 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7869850 TTAGAGACTA
7869860 TGTTTGTATTCTTTCCCTATAGCGG
1 TGTTTGTATTCTTTCCCTATAGCGG
7869885 TGTTTGTATTCTTTCCCTATAGCGG
1 TGTTTGTATTCTTTCCCTATAGCGG
7869910 GAAATCAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.48
Consensus pattern (25 bp):
TGTTTGTATTCTTTCCCTATAGCGG
Found at i:7872039 original size:7 final size:7
Alignment explanation
Indices: 7872027--7872086 Score: 59
Period size: 8 Copynumber: 8.1 Consensus size: 7
7872017 ATTTATTTTC
7872027 TTTCTCT
1 TTTCTCT
7872034 TTTCTCT
1 TTTCTCT
7872041 TTTCTCTT
1 TTTCTC-T
*
7872049 TTTCCACT
1 TTT-CTCT
7872057 TTT-TCT
1 TTTCTCT
7872063 TTTCCTCT
1 TTT-CTCT
7872071 TTCTCTCT
1 TT-TCTCT
*
7872079 TTTTTCT
1 TTTCTCT
7872086 T
1 T
7872087 CTCTATTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
6 5 0.11
7 18 0.40
8 19 0.42
9 3 0.07
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTCTCT
Found at i:7872082 original size:23 final size:22
Alignment explanation
Indices: 7872029--7872086 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
7872019 TTATTTTCTT
* *
7872029 TCTCTTTTCTCTTTTCTCTTTT
1 TCTCTTTTTTCTTTTCTCTTTC
*
7872051 TC-CACTTTTTCTTTTCCTCTTTC
1 TCTC-TTTTTTCTTTT-CTCTTTC
7872074 TCTCTTTTTTCTT
1 TCTCTTTTTTCTT
7872087 CTCTATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.03
22 11 0.38
23 16 0.55
24 1 0.03
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TCTCTTTTTTCTTTTCTCTTTC
Found at i:7877492 original size:22 final size:23
Alignment explanation
Indices: 7877464--7877535 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 23
7877454 ATTCTCTTCC
*
7877464 TCAGTGC-TATGTCACTTTTGTA
1 TCAGTGCGAATGTCACTTTTGTA
*
7877486 TCAGTGCGAATG-CACTTTAG-A
1 TCAGTGCGAATGTCACTTTTGTA
*
7877507 CTCAGTGCGAATAT-ACTTTTGTA
1 -TCAGTGCGAATGTCACTTTTGTA
7877530 TCAGTG
1 TCAGTG
7877536 TGTAGGCACT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
21 1 0.02
22 37 0.88
23 4 0.10
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (23 bp):
TCAGTGCGAATGTCACTTTTGTA
Found at i:7877546 original size:22 final size:22
Alignment explanation
Indices: 7877521--7877591 Score: 92
Period size: 22 Copynumber: 3.2 Consensus size: 22
7877511 GTGCGAATAT
*
7877521 ACTTTTGTATCAGTGTGT-AGGC
1 ACTTTTGTATTAGTGT-TAAGGC
7877543 ACTTTAT-TATTAGTGTTAAGGC
1 ACTTT-TGTATTAGTGTTAAGGC
*
7877565 ACTTTAGTATTAGTGTTAAGGC
1 ACTTTTGTATTAGTGTTAAGGC
7877587 ACTTT
1 ACTTT
7877592 CGTTATTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
21 1 0.02
22 42 0.95
23 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (22 bp):
ACTTTTGTATTAGTGTTAAGGC
Found at i:7880457 original size:13 final size:13
Alignment explanation
Indices: 7880448--7880492 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
7880438 ATCTATGATG
7880448 CGCATTTATGACA
1 CGCATTTATGACA
**
7880461 TACATTTATGACA
1 CGCATTTATGACA
*
7880474 CGCATTTATGACG
1 CGCATTTATGACA
7880487 CGCATT
1 CGCATT
7880493 GCGCGTCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (13 bp):
CGCATTTATGACA
Found at i:7880462 original size:26 final size:26
Alignment explanation
Indices: 7880414--7880485 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
7880404 TAAATCTCAG
* *
7880414 ATGACACGCAAATTTGTGTCATAAATCT
1 ATGACACGC--ATTTATGACATAAATCT
** * *
7880442 ATGATGCGCATTTATGACATACATTT
1 ATGACACGCATTTATGACATAAATCT
7880468 ATGACACGCATTTATGAC
1 ATGACACGCATTTATGAC
7880486 GCGCATTGCG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
26 29 0.81
28 7 0.19
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (26 bp):
ATGACACGCATTTATGACATAAATCT
Found at i:7882099 original size:3 final size:3
Alignment explanation
Indices: 7882093--7882197 Score: 140
Period size: 3 Copynumber: 34.3 Consensus size: 3
7882083 GTTGTTGTTG
* ** *
7882093 TTA TTA TTA TTA TTA TTAA TTA TAA TTA TT- TTA GGA TCTG TTGA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA T-TA TT-A TTA
7882140 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7882188 TTA TTA TTA T
1 TTA TTA TTA T
7882198 AAGAATTAGT
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.02
3 82 0.91
4 6 0.07
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7887757 original size:18 final size:18
Alignment explanation
Indices: 7887712--7887759 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
7887702 GGTTAGTTAG
*
7887712 ATTAATGAACT-AGTTTA
1 ATTAATGAACTAACTTTA
*
7887729 ATTAATTAACTAACTTT-
1 ATTAATGAACTAACTTTA
7887746 ATTGAATGAACTAA
1 ATT-AATGAACTAA
7887760 GGTGCATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (18 bp):
ATTAATGAACTAACTTTA
Found at i:7888020 original size:24 final size:25
Alignment explanation
Indices: 7887979--7888025 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
7887969 AAATGCAATC
*
7887979 ATGACATATATGTGTATG-ATATGG
1 ATGACATATATGTCTATGTATATGG
7888003 ATGACATGATAT-TCTATGTATAT
1 ATGACAT-ATATGTCTATGTATAT
7888026 AATATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.40
Consensus pattern (25 bp):
ATGACATATATGTCTATGTATATGG
Found at i:7894937 original size:18 final size:18
Alignment explanation
Indices: 7894887--7894938 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
7894877 TTTGAATGGC
*
7894887 GTTGCCGTGGTAAGTGGT
1 GTTGTCGTGGTAAGTGGT
** *
7894905 GTTGTCACGGAAAGTGGT
1 GTTGTCGTGGTAAGTGGT
*
7894923 GTTGTTGTGGTAAGTG
1 GTTGTCGTGGTAAGTG
7894939 TTGTAAGGTT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.08, G:0.42, T:0.35
Consensus pattern (18 bp):
GTTGTCGTGGTAAGTGGT
Found at i:7897050 original size:10 final size:10
Alignment explanation
Indices: 7897035--7897066 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
7897025 GAGATATGGA
7897035 GATCAATTTG
1 GATCAATTTG
7897045 GATCAATTTG
1 GATCAATTTG
7897055 GATCAATTTG
1 GATCAATTTG
7897065 GA
1 GA
7897067 AGTTTGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (10 bp):
GATCAATTTG
Found at i:7899077 original size:31 final size:31
Alignment explanation
Indices: 7899036--7899114 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
7899026 TATGTAGATA
* *
7899036 AATATAAAAGTTATGAAAAAATATGAACATT
1 AATATGAAAGTTATGAAAAAATATGAACATG
* *
7899067 AATATGAAAGTTATGACATAATATGAACATG
1 AATATGAAAGTTATGAAAAAATATGAACATG
7899098 AATATGAAAGTTATGAA
1 AATATGAAAGTTATGAA
7899115 TGACTTCTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.53, C:0.04, G:0.14, T:0.29
Consensus pattern (31 bp):
AATATGAAAGTTATGAAAAAATATGAACATG
Found at i:7902562 original size:22 final size:22
Alignment explanation
Indices: 7902489--7902565 Score: 118
Period size: 22 Copynumber: 3.5 Consensus size: 22
7902479 GTAGGACAAC
* *
7902489 TACATCCTGAAAGACCACTGGA
1 TACATCCCGAAGGACCACTGGA
*
7902511 TACATCCCAAAGGACCACTGGA
1 TACATCCCGAAGGACCACTGGA
7902533 TACATCCCGAAGGACCACTGGA
1 TACATCCCGAAGGACCACTGGA
*
7902555 TACGTCCCGAA
1 TACATCCCGAA
7902566 TGACTAATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.34, C:0.31, G:0.19, T:0.16
Consensus pattern (22 bp):
TACATCCCGAAGGACCACTGGA
Found at i:7909278 original size:22 final size:21
Alignment explanation
Indices: 7909253--7909324 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 21
7909243 GGACTACTAT
*
7909253 GTCCCGAAGGACCACTGTATAT
1 GTCCCGAAGGACCACTG-ATAC
7909275 GTCCC-ATAGGACCAC---TAC
1 GTCCCGA-AGGACCACTGATAC
*
7909293 GTCCTGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACT-GATAC
7909315 GTCCCGAAGG
1 GTCCCGAAGG
7909325 CCTAATATAC
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
18 14 0.34
19 1 0.02
21 1 0.02
22 25 0.61
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (21 bp):
GTCCCGAAGGACCACTGATAC
Found at i:7909286 original size:40 final size:40
Alignment explanation
Indices: 7909242--7909319 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
7909232 TTCGTCCTGA
* * * *
7909242 AGGACTACTATGTCCCGAAGGACCACTGTATATGTCCCAT
1 AGGACCACTACGTCCCGAAGGACCACTGGATACGTCCCAT
*
7909282 AGGACCACTACGTCCTGAAGGACCACTGGATACGTCCC
1 AGGACCACTACGTCCCGAAGGACCACTGGATACGTCCC
7909320 GAAGGCCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
AGGACCACTACGTCCCGAAGGACCACTGGATACGTCCCAT
Found at i:7909980 original size:65 final size:64
Alignment explanation
Indices: 7909834--7909993 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 64
7909824 AATGAAGGTA
* * * * *
7909834 TGCATCGATGCACTACTTGTGCATCGGTGCATAAAAGGCATTCGATATTTATATTTTAAGCATG
1 TGCATCGATGCACTCCTTATGCATCGATGCATAAAAGGCATTCGATATTCATATTTAAAGCATG
* * * *
7909898 TGCATCGATGCACTCCTTTTGCATCTATGCATCAATGGCATTCGATATTCATTAATTTAAATG-A
1 TGCATCGATGCACTCCTTATGCATCGATGCATAAAAGGCATTCGATATTCA-T-ATTTAAA-GCA
7909962 -G
63 TG
7909963 TGCATCGATGCACTCCTTATGCATCGATGCA
1 TGCATCGATGCACTCCTTATGCATCGATGCA
7909994 CCTTCAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 44 0.53
65 31 0.37
66 7 0.08
67 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (64 bp):
TGCATCGATGCACTCCTTATGCATCGATGCATAAAAGGCATTCGATATTCATATTTAAAGCATG
Found at i:7913830 original size:14 final size:14
Alignment explanation
Indices: 7913808--7913847 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7913798 AATGTGAAGT
*
7913808 AATCCCTGCA-AATA
1 AATCTCTGCATAA-A
7913822 AATCTCTGCATAAA
1 AATCTCTGCATAAA
7913836 AATCTCTGCATA
1 AATCTCTGCATA
7913848 TAGACAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 22 0.92
15 2 0.08
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (14 bp):
AATCTCTGCATAAA
Found at i:7920104 original size:17 final size:16
Alignment explanation
Indices: 7920084--7920136 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
7920074 ATTAAAAGGT
*
7920084 TAGTTAGATTAATGAAC
1 TAGTTA-ATTAATAAAC
*
7920101 TAGTTATATGAATAAAC
1 TAGTTA-ATTAATAAAC
7920118 TAGTTTAATTAATAAAC
1 TAG-TTAATTAATAAAC
7920135 TA
1 TA
7920137 ACTTTATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 28 0.90
18 3 0.10
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (16 bp):
TAGTTAATTAATAAAC
Found at i:7923710 original size:23 final size:23
Alignment explanation
Indices: 7923680--7923800 Score: 224
Period size: 23 Copynumber: 5.3 Consensus size: 23
7923670 ATGATCGAAT
7923680 CGTTGACTTTGGTCAAAGTTTAC
1 CGTTGACTTTGGTCAAAGTTTAC
7923703 CGTTGACTTTGGTCAAAGTTTAC
1 CGTTGACTTTGGTCAAAGTTTAC
7923726 CGTTGACTTTGGTCAAAGTTTAC
1 CGTTGACTTTGGTCAAAGTTTAC
*
7923749 CGTTTACTTTGGTCAAAGTTTAC
1 CGTTGACTTTGGTCAAAGTTTAC
*
7923772 CGTTTACTTTGGTCAAAGTTTAC
1 CGTTGACTTTGGTCAAAGTTTAC
7923795 CGTTGA
1 CGTTGA
7923801 ATGGTCAGAC
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 96 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (23 bp):
CGTTGACTTTGGTCAAAGTTTAC
Found at i:7932570 original size:20 final size:20
Alignment explanation
Indices: 7932545--7932585 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7932535 ATTTCGTATG
7932545 TGATAAGTTTAAAAAGAATA
1 TGATAAGTTTAAAAAGAATA
*
7932565 TGATAATTTTAAAAAGAATA
1 TGATAAGTTTAAAAAGAATA
7932585 T
1 T
7932586 ACCCTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.34
Consensus pattern (20 bp):
TGATAAGTTTAAAAAGAATA
Done.