Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9158330
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 35
Found at i:7937094 original size:6 final size:6
Alignment explanation
Indices: 7937083--7937107 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7937073 TTACACGGGA
7937083 GTTGGG GTTGGG GTTGGG GTTGGG G
1 GTTGGG GTTGGG GTTGGG GTTGGG G
7937108 AAGGACGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (6 bp):
GTTGGG
Found at i:7937603 original size:26 final size:27
Alignment explanation
Indices: 7937574--7937629 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
7937564 TATTTTATTA
* *
7937574 TTATA-TATTGATGTAGTTATAAAATT
1 TTATATTAGTGATGAAGTTATAAAATT
*
7937600 TTATATTAGTGATGAATTTATAAAATT
1 TTATATTAGTGATGAAGTTATAAAATT
7937627 TTA
1 TTA
7937630 CGTGATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (27 bp):
TTATATTAGTGATGAAGTTATAAAATT
Found at i:7940701 original size:42 final size:42
Alignment explanation
Indices: 7940639--7940758 Score: 222
Period size: 42 Copynumber: 2.9 Consensus size: 42
7940629 TTTCCCCGAA
*
7940639 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
*
7940681 TTTCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
7940723 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
7940759 TGTAATTCAT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.16, C:0.20, G:0.19, T:0.45
Consensus pattern (42 bp):
TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
Found at i:7940973 original size:21 final size:20
Alignment explanation
Indices: 7940947--7940993 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7940937 TAATTATTAA
* *
7940947 AATATTTAAAATATATTTATT
1 AATATTTAAAATA-ATATAAT
*
7940968 AATATTTATAATAATATAAT
1 AATATTTAAAATAATATAAT
7940988 AATATT
1 AATATT
7940994 ATATTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATTTAAAATAATATAAT
Found at i:7941086 original size:54 final size:55
Alignment explanation
Indices: 7940972--7941109 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 55
7940962 TTTATTAATA
*
7940972 TTTATAATAATATAATAATATTATATTTTTAATATTATATAAAATAATCAATTAT
1 TTTATAATAATATAATAATATTATATTTTTAATATTATATAAAATAATAAATTAT
* * * *
7941027 ATTATAATAATATAA-GATATTATATTTTT-ATTTTA-ATAATATATAATAAATTTT
1 TTTATAATAATATAATAATATTATATTTTTAATATTATATAA-A-ATAATAAATTAT
7941081 TTTATATATTTAATAATGAATAATATTAT
1 TTTATA-A--TAAT-AT-AATAATATTAT
7941110 TTATATATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
52 4 0.06
53 6 0.09
54 28 0.41
55 15 0.22
57 4 0.06
58 2 0.03
59 2 0.03
60 7 0.10
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (55 bp):
TTTATAATAATATAATAATATTATATTTTTAATATTATATAAAATAATAAATTAT
Found at i:7941319 original size:20 final size:20
Alignment explanation
Indices: 7941294--7941363 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
7941284 TTTTCAGATG
7941294 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
7941314 TTTTCCAGAAATATAATTCA
1 TTTTCCAGAAATGTAATTCA
*
7941334 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
7941354 TTTTCCAGAA
1 TTTTCCAGAA
7941364 TTCAAATTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:7941382 original size:15 final size:15
Alignment explanation
Indices: 7941346--7941427 Score: 103
Period size: 15 Copynumber: 5.5 Consensus size: 15
7941336 TTACAGAAAT
**
7941346 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
7941361 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
**
7941375 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
*
7941390 ATAATTCAAATTCCA
1 GTAATTCAAATTCCA
*
7941405 ATAATTCAAATTCCA
1 GTAATTCAAATTCCA
7941420 GTAATTCA
1 GTAATTCA
7941428 TTTTCTGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
14 12 0.21
15 46 0.79
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:7942566 original size:93 final size:94
Alignment explanation
Indices: 7942359--7942666 Score: 514
Period size: 94 Copynumber: 3.3 Consensus size: 94
7942349 GAAAATTATT
* * *
7942359 AACCGAAATTTATTTGAAAATTATTAACTGAACTAAATTAATCGA--TTTTTTCTTTAACATTAA
1 AACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGATTTTTTTTCTTTAACATTAA
*
7942422 TCGAACCGAAATTATTTGACCGTTAATTG
66 TCGAACCGAAATTATTTGACCGTTAATCG
7942451 AACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGATTTTTTTTCTTTAACATTAA
1 AACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGATTTTTTTTCTTTAACATTAA
*
7942516 TCTAACCGAAATTATTT-ACCGTTAATCG
66 TCGAACCGAAATTATTTGACCGTTAATCG
* *
7942544 AATCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACTGATTATTTTTTCTTTAACATTA
1 AACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGATT-TTTTTTCTTTAACATTA
*
7942609 ATCGAACCGAAATTATTTGATCGTTAATCG
65 ATCGAACCGAAATTATTTGACCGTTAATCG
7942639 AACCGAAATTTATTTGAAAATTATTAAC
1 AACCGAAATTTATTTGAAAATTATTAAC
7942667 TGAATTTTTT
Statistics
Matches: 202, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
92 42 0.21
93 55 0.27
94 68 0.34
95 37 0.18
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (94 bp):
AACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGATTTTTTTTCTTTAACATTAA
TCGAACCGAAATTATTTGACCGTTAATCG
Found at i:7942715 original size:81 final size:81
Alignment explanation
Indices: 7942580--7942847 Score: 349
Period size: 81 Copynumber: 3.1 Consensus size: 81
7942570 ACCGAACCAA
* *
7942580 ATTAACTGATTATTTTTTCTTTAACATTAATCGAACCGAAATTATTTGATCGTTAATCGAACCGA
1 ATTAACTGAATATTTTTTCTTTAACATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCGA
7942645 AATTTATTTGAAAATT
66 AATTTATTTGAAAATT
*
7942661 ATTAACTGAAT-TTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCT
1 ATTAACTGAATATTTTTTCTTTAA-CATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCG
7942725 AAATTTATTTGAAAATT
65 AAATTTATTTGAAAATT
*
7942742 ATTAACCGAACCAAATCAACCGATTATTTTCTTTAACTATTAATCGAACCGAAATTATTTGACCG
1 ATTAACTG-----AAT------ATT-TTTTCTTTAAC-ATTAATCGAACCGAAATTATTTGACCG
*
7942807 TTAATCGAATCGAAATTTATTTGAAAATT
53 TTAATCGAACCGAAATTTATTTGAAAATT
*
7942836 ATTAACCGAATA
1 ATTAACTGAATA
7942848 AAATAAATTA
Statistics
Matches: 166, Mismatches: 6, Indels: 28
0.83 0.03 0.14
Matches are distributed among these distances:
80 12 0.07
81 72 0.43
83 1 0.01
86 3 0.02
89 3 0.02
93 3 0.02
94 72 0.43
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (81 bp):
ATTAACTGAATATTTTTTCTTTAACATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCGA
AATTTATTTGAAAATT
Found at i:7942797 original size:175 final size:173
Alignment explanation
Indices: 7942487--7942846 Score: 596
Period size: 175 Copynumber: 2.1 Consensus size: 173
7942477 ACCGAACCAA
* * *
7942487 ATTAACCGATTTTTTTTCTTTAACATTAATCTAACCGAAATTATTTACCGTTAATCGAATCGAAA
1 ATTAACCGAATTTTTTTCTTTAACATTAATCGAACCGAAATTATTTACCGTTAATCGAACCGAAA
* *
7942552 TTTATTTGAAAATTATTAACCGAACCAAATTAACTGATTATTTTTTCTTTAACATTAATCGAACC
66 TTTATTTGAAAATTATTAACCGAACCAAATCAACCGATTA-TTTTTCTTTAACATTAATCGAACC
*
7942617 GAAATTATTTGATCGTTAATCGAACCGAAATTTATTTGAAAATT
130 GAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAAATT
* *
7942661 ATTAACTGAATTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCTA
1 ATTAACCGAATTTTTTTCTTTAA-CATTAATCGAACCGAAATTATTT-ACCGTTAATCGAACCGA
7942726 AATTTATTTGAAAATTATTAACCGAACCAAATCAACCGATTA-TTTTCTTTAACTATTAATCGAA
64 AATTTATTTGAAAATTATTAACCGAACCAAATCAACCGATTATTTTTCTTTAAC-ATTAATCGAA
*
7942790 CCGAAATTATTTGACCGTTAATCGAATCGAAATTTATTTGAAAATT
128 CCGAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAAATT
7942836 ATTAACCGAAT
1 ATTAACCGAAT
7942847 AAAATAAATT
Statistics
Matches: 173, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
174 32 0.18
175 86 0.50
176 55 0.32
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (173 bp):
ATTAACCGAATTTTTTTCTTTAACATTAATCGAACCGAAATTATTTACCGTTAATCGAACCGAAA
TTTATTTGAAAATTATTAACCGAACCAAATCAACCGATTATTTTTCTTTAACATTAATCGAACCG
AAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAAATT
Found at i:7942835 original size:94 final size:94
Alignment explanation
Indices: 7942674--7942845 Score: 317
Period size: 94 Copynumber: 1.8 Consensus size: 94
7942664 AACTGAATTT
*
7942674 TTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCTAAATTTATTTGAAA
1 TTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAA
7942739 ATTATTAACCGAACCAAATCAACCGATTA
66 ATTATTAACCGAACCAAATCAACCGATTA
* *
7942768 TTTTCTTTAACTATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCGAAATTTATTTGAAA
1 TTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAA
7942833 ATTATTAACCGAA
66 ATTATTAACCGAA
7942846 TAAAATAAAT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (94 bp):
TTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAA
ATTATTAACCGAACCAAATCAACCGATTA
Found at i:7942907 original size:37 final size:36
Alignment explanation
Indices: 7942793--7942909 Score: 88
Period size: 37 Copynumber: 3.4 Consensus size: 36
7942783 AATCGAACCG
* * *
7942793 AAATTATTTGACCGTTAATCGAATCGAAATTTATTTGA
1 AAATTA-TTAACCGTTAATC-AAACAAAATTTATTTGA
7942831 AAATTATTAACCG--AAT-AAA-ATAAA-TTATTT--
1 AAATTATTAACCGTTAATCAAACA-AAATTTATTTGA
** *
7942861 -TTTTCTTAACCGTTAATCAAACCAAAATTTATTTGA
1 AAATTATTAACCGTTAATCAAA-CAAAATTTATTTGA
7942897 AAATTATTAACCG
1 AAATTATTAACCG
7942910 AATCGAATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 21
0.67 0.10 0.23
Matches are distributed among these distances:
29 9 0.15
31 3 0.05
32 9 0.15
33 8 0.13
34 7 0.12
35 3 0.05
37 15 0.25
38 6 0.10
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (36 bp):
AAATTATTAACCGTTAATCAAACAAAATTTATTTGA
Found at i:7943708 original size:3 final size:3
Alignment explanation
Indices: 7943700--7943746 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
7943690 CAACATCAAC
*
7943700 TCT TCT TCT TCT TCT T-T TCT TCTT TCT TCT T-T ATCT TTT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT -TCT TCT TCT TCT
7943745 TC
1 TC
7943747 CAACTTCTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 3 0.08
3 31 0.82
4 4 0.11
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:7943726 original size:21 final size:22
Alignment explanation
Indices: 7943702--7943745 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
7943692 ACATCAACTC
7943702 TTCTTCTTCT-TC-TTTTCTTCT
1 TTCTTCTT-TATCTTTTTCTTCT
7943723 TTCTTCTTTATCTTTTTCTTCT
1 TTCTTCTTTATCTTTTTCTTCT
7943745 T
1 T
7943746 CCAACTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 10 0.48
22 10 0.48
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (22 bp):
TTCTTCTTTATCTTTTTCTTCT
Found at i:7943728 original size:15 final size:15
Alignment explanation
Indices: 7943702--7943745 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
7943692 ACATCAACTC
7943702 TTCTTC-TTCTTCTT
1 TTCTTCTTTCTTCTT
7943716 TTCTTCTTTCTTCTT
1 TTCTTCTTTCTTCTT
7943731 TATCTT-TTTCTTCTT
1 T-TCTTCTTTCTTCTT
7943746 CCAACTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.21
15 18 0.64
16 4 0.14
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTTCTTTCTTCTT
Found at i:7946076 original size:25 final size:25
Alignment explanation
Indices: 7946022--7946076 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7946012 TAGGTAATTT
*
7946022 ATTTTTTTTCTATAAAATTCTTTAA
1 ATTTATTTTCTATAAAATTCTTTAA
* *
7946047 GTTTATTTTCTCTAAAATT-TTATAA
1 ATTTATTTTCTATAAAATTCTT-TAA
7946072 ATTTA
1 ATTTA
7946077 AAATTAAGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTTATTTTCTATAAAATTCTTTAA
Found at i:7946329 original size:11 final size:9
Alignment explanation
Indices: 7946298--7946323 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7946288 ACGTGACACA
7946298 TGTTTTTTT
1 TGTTTTTTT
7946307 TGTTTTTTT
1 TGTTTTTTT
7946316 TGTTTTTT
1 TGTTTTTT
7946324 AATTGTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (9 bp):
TGTTTTTTT
Found at i:7951543 original size:44 final size:45
Alignment explanation
Indices: 7951447--7951577 Score: 228
Period size: 44 Copynumber: 2.9 Consensus size: 45
7951437 AATTTCTTAT
*
7951447 CAATATATTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
*
7951492 CAGTATACTTACCATTTATCCCATAAGCTCG-AAGCTTATTTTAC
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
*
7951536 TAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTT
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTT
7951578 GCATGGTTAC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 42 0.52
45 39 0.48
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (45 bp):
CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
Found at i:7955030 original size:24 final size:24
Alignment explanation
Indices: 7955003--7955075 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 24
7954993 TATACTTACC
7955003 ATTTATCCCATAAGCTCGAAGCTT
1 ATTTATCCCATAAGCTCGAAGCTT
* *
7955027 ATTT-TACCAATATA-CT--TA-C-T
1 ATTTAT-CCCATA-AGCTCGAAGCTT
7955047 ATTTATCCCATAAGCTCGTAAGCTT
1 ATTTATCCCATAAGCTCG-AAGCTT
7955072 ATTT
1 ATTT
7955076 GCATGGTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 17
0.63 0.07 0.30
Matches are distributed among these distances:
19 1 0.03
20 12 0.33
21 2 0.06
22 1 0.03
23 2 0.06
24 12 0.33
25 6 0.17
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (24 bp):
ATTTATCCCATAAGCTCGAAGCTT
Found at i:7955041 original size:44 final size:45
Alignment explanation
Indices: 7954945--7955075 Score: 228
Period size: 44 Copynumber: 2.9 Consensus size: 45
7954935 AATTTCTTAT
*
7954945 CAATATATTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
*
7954990 CAGTATACTTACCATTTATCCCATAAGCTCG-AAGCTTATTTTAC
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
*
7955034 CAATATACTTACTATTTATCCCATAAGCTCGTAAGCTTATTT
1 CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTT
7955076 GCATGGTTAC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 42 0.52
45 39 0.48
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (45 bp):
CAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTAC
Found at i:7955289 original size:59 final size:59
Alignment explanation
Indices: 7955197--7955311 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
7955187 CGAGTATGAC
* * **
7955197 ACATAAGGTCGTGTCCACCATCTGTACTAGGTATCCTTAAGTATAGTCCCGAATATAAA
1 ACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTATAGTCCCGAATATAAA
* * *
7955256 ACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTATTCCCGAATAT
1 ACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTATAGTCCCGAATAT
7955312 GCAGCCTGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (59 bp):
ACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTATAGTCCCGAATATAAA
Found at i:7957193 original size:30 final size:29
Alignment explanation
Indices: 7957139--7957229 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
7957129 ACCCATATGT
* * * *
7957139 AACTTTTTAAAATTACATTTTGGTCCCTA
1 AACTTTATAAATTTATAATTTGGTCCCTA
*
7957168 AACTTT-TCAAAGTTTATACTTTGGTCACC-A
1 AACTTTAT-AAA-TTTATAATTTGGTC-CCTA
*
7957198 AACTTTAATAAATTTATAATTTGGTCACTA
1 AACTTT-ATAAATTTATAATTTGGTCCCTA
7957228 AA
1 AA
7957230 TAAATCCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
28 1 0.02
29 10 0.20
30 34 0.67
31 5 0.10
32 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (29 bp):
AACTTTATAAATTTATAATTTGGTCCCTA
Found at i:7958462 original size:36 final size:36
Alignment explanation
Indices: 7958411--7959358 Score: 1136
Period size: 36 Copynumber: 26.0 Consensus size: 36
7958401 ATCAGACTCG
*
7958411 AGATTGATTTTCTTCACTACTCTTCTGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958447 AGATTGATTTGCTTCACTACTATTCTGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958483 CGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
7958519 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGC-TA
* *
7958556 A-TTTGATTTGCTTCACTACTCTTATGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * *
7958591 AGATTGATTTTCTTCATTACTCTTCTATGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958627 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGATA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958663 AGATTGATTTGCTTCATTACTCTTCTGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* *
7958699 AGATTGATTTGCTTCACTACTCTTCTATGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * * *
7958735 AGATTGATTTGTTTCACTACTTTTTTGTGAAGTCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* *
7958771 AAATTGATTTGCTTTACTACTCTTCTGTGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958807 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * *
7958843 ATATTGATTTGCTTCACTACTCTTCTGTGAAGACTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7958879 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * *
7958915 ATATTGATTTGCTTCACTACTCTTCTGTGAAGACTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* *
7958951 AGATTGATTTGCTTCACTACTCTTCTATGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * **
7958987 TGATTGATTTGCTTCACTACTCTTCT-TTACTACTCTTCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGA--A---GGCTA
* * * * * * * ***
7959027 TGACGGCTAAGA-TTGACTT-GCTTCACTACTCT-TCTG-TGA
1 --A--GAT-TGATTTG-CTTCACTACTCTTCTGTGAAGGCT-A
* *
7959066 AGGCTTAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
1 A-GATT-G----ATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * *
7959108 AGATTGATTTTCTTCACTACTTTTCTATGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* * *
7959144 AGATTGATTTTCTTTACTACTCTTCTATGAAGGCTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* *
7959180 AGATTGATTTGCTTCACAACTCTTCTGTGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
* *
7959216 AGATTGATTTGCTTCACTACTCTTCTATGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
*
7959252 AGATTGATTTGCTTCACTACTCTTAC-GTGAAGGCTT
1 AGATTGATTTGCTTCACTACTCTT-CTGTGAAGGCTA
* * * *
7959288 AGATTGATTTGCTTTACTACTTTTATGTGAAGGATA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
7959324 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCT
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCT
7959359 TAGTAAGAAG
Statistics
Matches: 792, Mismatches: 94, Indels: 52
0.84 0.10 0.06
Matches are distributed among these distances:
35 5 0.01
36 736 0.93
37 6 0.01
38 1 0.00
39 2 0.00
40 7 0.01
41 14 0.02
42 2 0.00
43 1 0.00
44 12 0.02
45 6 0.01
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.42
Consensus pattern (36 bp):
AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
Found at i:7958600 original size:108 final size:107
Alignment explanation
Indices: 7958411--7959358 Score: 1277
Period size: 108 Copynumber: 8.7 Consensus size: 107
7958401 ATCAGACTCG
* * *
7958411 AGATTGATTTTCTTCACTACTCTTCTGTGAAGGCTAAGATTGATTTGCTTCACTACTATTCTGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
* *
7958476 AAGGCTACGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTA
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
*
7958519 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTAATTTGATTTGCTTCACTACTCTTATGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTAA-TTGATTTGCTTCACTACTCTTCTGTG
* * * *
7958584 AAGGCTAAGATTGATTTTCTTCATTACTCTTCTATGAAGGCTA
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* * *
7958627 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGATAAGATTGATTTGCTTCATTACTCTTCTGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
*
7958692 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTATGAAGGCTT
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* * * * * *
7958735 AGATTGATTTGTTTCACTACTTTTTTGTGAAGTCTAAAATTGATTTGCTTTACTACTCTTCTGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCT-TAATTGATTTGCTTCACTACTCTTCTGTG
7958800 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* *
7958843 ATATTGATTTGCTTCACTACTCTTCTGTGAAGACTTAGATTGATTTGCTTCACTACTCTTCTGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
* * *
7958908 AAGGCTTATATTGATTTGCTTCACTACTCTTCTGTGAAGACTT
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* *
7958951 AGATTGATTTGCTTCACTACTCTTCTATGAAGGCTTTGATTGATTTGCTTCACTACTCTTCTTTA
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGC-TTAATTGATTTG----------CTTC---A
* * *
7959016 CTACTCTTCTATGACGGCTAAGATTGACTTGCTTCACTACTCTTCTGTGAAGGCTT
52 CTACTCTTCTGTGAAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* * *
7959072 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTAGATTGATTTTCTTCACTACTTTTCTATG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
* * * *
7959137 AAGGCTAAGATTGATTTTCTTTACTACTCTTCTATGAAGGCTA
65 AAGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
* *
7959180 AGATTGATTTGCTTCACAACTCTTCTGTGAAGGCTTAGATTGATTTGCTTCACTACTCTTCTATG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
*
7959245 AAGGCTTAGATTGATTTGCTTCACTACTCTTAC-GTGAAGGCTT
65 AAGGCTAAGATTGATTTGCTTCACTACTCTT-CTGTGAAGGCTT
* * * * *
7959288 AGATTGATTTGCTTTACTACTTTTATGTGAAGGATAAGATTGATTTGCTTCACTACTCTTCTGTG
1 AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-ATTGATTTGCTTCACTACTCTTCTGTG
7959353 AAGGCT
65 AAGGCT
7959359 TAGTAAGAAG
Statistics
Matches: 752, Mismatches: 68, Indels: 40
0.87 0.08 0.05
Matches are distributed among these distances:
107 2 0.00
108 642 0.85
109 6 0.01
111 4 0.01
118 4 0.01
120 2 0.00
121 92 0.12
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.42
Consensus pattern (107 bp):
AGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTTAATTGATTTGCTTCACTACTCTTCTGTGA
AGGCTAAGATTGATTTGCTTCACTACTCTTCTGTGAAGGCTT
Found at i:7959041 original size:49 final size:49
Alignment explanation
Indices: 7958966--7959061 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
7958956 GATTTGCTTC
** *
7958966 ACTACTCTTCTATGAAGGCTTTGATTGATTTGCTTCACTACTCTTCTTT
1 ACTACTCTTCTATGAAGGCTAAGATTGACTTGCTTCACTACTCTTCTTT
*
7959015 ACTACTCTTCTATGACGGCTAAGATTGACTTGCTTCACTACTCTTCT
1 ACTACTCTTCTATGAAGGCTAAGATTGACTTGCTTCACTACTCTTCT
7959062 GTGAAGGCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (49 bp):
ACTACTCTTCTATGAAGGCTAAGATTGACTTGCTTCACTACTCTTCTTT
Found at i:7959077 original size:85 final size:85
Alignment explanation
Indices: 7958930--7959097 Score: 273
Period size: 85 Copynumber: 2.0 Consensus size: 85
7958920 GATTTGCTTC
* * * *
7958930 ACTACTCTTCTGTGAAGACTTAGATTGATTTGCTTCACTACTCTTCTATGAAGGCTTTGATTGAT
1 ACTACTCTTCTATGAAGACTAAGATTGACTTGCTTCACTACTCTTCTATGAAGGCTTAGATTGAT
7958995 TTGCTTCACTACTCTTCTTT
66 TTGCTTCACTACTCTTCTTT
* * *
7959015 ACTACTCTTCTATGACGGCTAAGATTGACTTGCTTCACTACTCTTCTGTGAAGGCTTAGATTGAT
1 ACTACTCTTCTATGAAGACTAAGATTGACTTGCTTCACTACTCTTCTATGAAGGCTTAGATTGAT
7959080 TTGCTTCACTACTCTTCT
66 TTGCTTCACTACTCTTCT
7959098 GTGAAGGCTT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (85 bp):
ACTACTCTTCTATGAAGACTAAGATTGACTTGCTTCACTACTCTTCTATGAAGGCTTAGATTGAT
TTGCTTCACTACTCTTCTTT
Found at i:7971023 original size:64 final size:64
Alignment explanation
Indices: 7970903--7971061 Score: 232
Period size: 64 Copynumber: 2.5 Consensus size: 64
7970893 ATGCACACCC
*
7970903 AACATCGAA-GCTATTTTGTGTACCGATGCACAGCCATGCATCGATACACTCATGGCTTTATTAA
1 AACATCGAATGC-ATTTTGTGTACCGATACACAGCCATGCATCGATACACTCATGGCTTTATTAA
* *
7970967 AACATCGAATGCATTTTGTGTACCGATACACATCCTATGCATTGATACACTC-TGGCTTTATTAA
1 AACATCGAATGCATTTTGTGTACCGATACACAGCC-ATGCATCGATACACTCATGGCTTTATTAA
* * *
7971031 AACATCAAATGCAATTAGTGTACCGATACAC
1 AACATCGAATGCATTTTGTGTACCGATACAC
7971062 CCCAAGTGTA
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
64 70 0.80
65 17 0.20
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (64 bp):
AACATCGAATGCATTTTGTGTACCGATACACAGCCATGCATCGATACACTCATGGCTTTATTAA
Found at i:7971078 original size:64 final size:65
Alignment explanation
Indices: 7970920--7971081 Score: 213
Period size: 64 Copynumber: 2.5 Consensus size: 65
7970910 AAGCTATTTT
* * * * *
7970920 GTGTACCGATGCACAGCC-ATGCATCGATACACTCATGGCTTTATTAAAACATCGAATGCATTTT
1 GTGTACCGATACACACCCAATGCATCGATACACTCATGGCTTTATTAAAACATCAAATGCAATTA
* * *
7970984 GTGTACCGATACACATCCTATGCATTGATACACTC-TGGCTTTATTAAAACATCAAATGCAATTA
1 GTGTACCGATACACACCCAATGCATCGATACACTCATGGCTTTATTAAAACATCAAATGCAATTA
*
7971048 GTGTACCGATACAC-CCCAAGTGTATCGATACACT
1 GTGTACCGATACACACCCAA-TGCATCGATACACT
7971082 AAGTCATATA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
63 3 0.03
64 68 0.79
65 15 0.17
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (65 bp):
GTGTACCGATACACACCCAATGCATCGATACACTCATGGCTTTATTAAAACATCAAATGCAATTA
Found at i:7976927 original size:44 final size:44
Alignment explanation
Indices: 7976851--7976953 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 44
7976841 TTTGTGCAAA
* *
7976851 GTGCATCGATACACTGAGGAAGTATACCGATGCATTCCTTGAAT
1 GTGCATCGATACACTGAGAAAGTACACCGATGCATTCCTTGAAT
* * *
7976895 GTGCATCGATACACT-ATGAAAGTGCACTGATGCATTCCTTGATT
1 GTGCATCGATACACTGA-GAAAGTACACCGATGCATTCCTTGAAT
*
7976939 GTGTATCGATACACT
1 GTGCATCGATACACT
7976954 CAAGACTGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 1 0.02
44 51 0.98
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (44 bp):
GTGCATCGATACACTGAGAAAGTACACCGATGCATTCCTTGAAT
Found at i:7977458 original size:13 final size:12
Alignment explanation
Indices: 7977435--7977477 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
7977425 AAAACTACAT
7977435 ATTGATTTTCAAA
1 ATTG-TTTTCAAA
7977448 CATTGTTTTCAAA
1 -ATTGTTTTCAAA
*
7977461 ATTATTTTCAAA
1 ATTGTTTTCAAA
7977473 TATTG
1 -ATTG
7977478 CCCATTAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 11 0.42
13 11 0.42
14 4 0.15
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (12 bp):
ATTGTTTTCAAA
Found at i:7977470 original size:12 final size:13
Alignment explanation
Indices: 7977439--7977472 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7977429 CTACATATTG
7977439 ATTTTCAAACATT
1 ATTTTCAAACATT
*
7977452 GTTTTCAAA-ATT
1 ATTTTCAAACATT
7977464 ATTTTCAAA
1 ATTTTCAAA
7977473 TATTGCCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (13 bp):
ATTTTCAAACATT
Found at i:7979622 original size:64 final size:64
Alignment explanation
Indices: 7979540--7979697 Score: 203
Period size: 64 Copynumber: 2.5 Consensus size: 64
7979530 ATGCATACCC
* *
7979540 AACATCGAA-GCTATTTTGTGTACCAATTCATAACC-ATACATTGATACACTCCTGACTTTATTA
1 AACATCGAATGC-ATTTTGTGTACCAATACATAACCTATACATCGATACACT-CTGACTTTATTA
7979603 A
64 A
* * * *
7979604 AACATCGAATGCATTTTGTGTACCGATACATATCCTATGCATCGATACACTCTGGCTTTATTAA
1 AACATCGAATGCATTTTGTGTACCAATACATAACCTATACATCGATACACTCTGACTTTATTAA
* * *
7979668 AACATCGAATGCAATTAGTGTACCGATACA
1 AACATCGAATGCATTTTGTGTACCAATACA
7979698 CCCCAAGTGT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
64 69 0.82
65 15 0.18
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.32
Consensus pattern (64 bp):
AACATCGAATGCATTTTGTGTACCAATACATAACCTATACATCGATACACTCTGACTTTATTAA
Found at i:7979715 original size:64 final size:65
Alignment explanation
Indices: 7979578--7979718 Score: 187
Period size: 64 Copynumber: 2.2 Consensus size: 65
7979568 CATAACCATA
* * * *
7979578 CATTGATACACTCCTGACTTTATTAAAACATCGAATGCATTTTGTGTACCGATACATATCCTATG
1 CATTGATACACTCCTGACTTTATTAAAACATCGAATGCAATTAGTGTACCGATACATACCCAATG
* * *
7979643 CATCGATACACT-CTGGCTTTATTAAAACATCGAATGCAATTAGTGTACCGATACA-CCCCAAGT
1 CATTGATACACTCCTGACTTTATTAAAACATCGAATGCAATTAGTGTACCGATACATACCCAA-T
7979706 G
65 G
*
7979707 TATTGATACACT
1 CATTGATACACT
7979719 AAGTCATATA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
63 3 0.05
64 52 0.79
65 11 0.17
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (65 bp):
CATTGATACACTCCTGACTTTATTAAAACATCGAATGCAATTAGTGTACCGATACATACCCAATG
Found at i:7983571 original size:13 final size:13
Alignment explanation
Indices: 7983553--7983594 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
7983543 AACGGTCAAC
7983553 GGTCAACGGGTCG
1 GGTCAACGGGTCG
7983566 GGTCAAC-GGTCG
1 GGTCAACGGGTCG
*
7983578 GGTAAACGGGTCG
1 GGTCAACGGGTCG
7983591 GGTC
1 GGTC
7983595 GGGTAAACGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:7983576 original size:7 final size:7
Alignment explanation
Indices: 7983533--7983561 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
7983523 AATAGCACCA
7983533 GTCAACG
1 GTCAACG
7983540 GTCAACG
1 GTCAACG
7983547 GTCAACG
1 GTCAACG
7983554 GTCAACG
1 GTCAACG
7983561 G
1 G
7983562 GTCGGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.31, T:0.14
Consensus pattern (7 bp):
GTCAACG
Found at i:7983596 original size:18 final size:18
Alignment explanation
Indices: 7983573--7983608 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7983563 TCGGGTCAAC
7983573 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
7983591 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
7983609 TGACCGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (18 bp):
GGTCGGGTAAACGGGTCG
Found at i:7983608 original size:13 final size:13
Alignment explanation
Indices: 7983557--7983593 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
7983547 GTCAACGGTC
*
7983557 AACGGGTCGGGTC
1 AACGGGTCGGGTA
7983570 AAC-GGTCGGGTA
1 AACGGGTCGGGTA
7983582 AACGGGTCGGGT
1 AACGGGTCGGGT
7983594 CGGGTAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.19, C:0.19, G:0.46, T:0.16
Consensus pattern (13 bp):
AACGGGTCGGGTA
Found at i:7983642 original size:10 final size:9
Alignment explanation
Indices: 7983611--7983644 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7983601 ACGGGTCGTG
7983611 ACCGGTCAA
1 ACCGGTCAA
*
7983620 ACCGGTTAA
1 ACCGGTCAA
7983629 ACCGGTCAAA
1 ACCGGTC-AA
7983639 ACCGGT
1 ACCGGT
7983645 TTCCAGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:7989746 original size:11 final size:13
Alignment explanation
Indices: 7989714--7989743 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7989704 TGGCCAAAGA
7989714 TGAAAAGGTATGT
1 TGAAAAGGTATGT
7989727 TGAAAAGGTATG-
1 TGAAAAGGTATGT
7989739 TGAAA
1 TGAAA
7989744 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:7993170 original size:21 final size:21
Alignment explanation
Indices: 7993144--7993239 Score: 183
Period size: 21 Copynumber: 4.6 Consensus size: 21
7993134 TTAGGCTAGA
7993144 AGTATCGATACTCCTTCATTG
1 AGTATCGATACTCCTTCATTG
7993165 AGTATCGATACTCCTTCATTG
1 AGTATCGATACTCCTTCATTG
7993186 AGTATCGATACTCCTTCATTG
1 AGTATCGATACTCCTTCATTG
*
7993207 AGTATCGATACTCCTTCATTT
1 AGTATCGATACTCCTTCATTG
7993228 AGTATCGATACT
1 AGTATCGATACT
7993240 GGGGGTATCG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
21 74 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
AGTATCGATACTCCTTCATTG
Found at i:8008134 original size:22 final size:22
Alignment explanation
Indices: 8008056--8008135 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
8008046 TCTCCCTAAT
8008056 TGCTAAGGCACTTTAGTATCAG
1 TGCTAAGGCACTTTAGTATCAG
* * *
8008078 TGC-ATATGCACTTTTGTATCAT
1 TGCTA-AGGCACTTTAGTATCAG
* * *
8008100 TGTTGAGGAACTTTAGTATCAG
1 TGCTAAGGCACTTTAGTATCAG
*
8008122 TGCTAAGTCACTTT
1 TGCTAAGGCACTTT
8008136 CGTGATTAAA
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
21 1 0.02
22 42 0.98
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (22 bp):
TGCTAAGGCACTTTAGTATCAG
Found at i:8009091 original size:54 final size:53
Alignment explanation
Indices: 8009009--8009115 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 53
8008999 CTATGACTGT
8009009 GTGATAGATTACCATCCGGGTAAAGCCAATGTAGTATAAATACACCTTGAGTAG
1 GTGATAGATTACCATCCGGGTAAAGCCAATGTAGTAT-AATACACCTTGAGTAG
8009063 GTGATAGATTACCATCCGGGTAAAGCCAATGTAGTATAATACACCTTGAGTAG
1 GTGATAGATTACCATCCGGGTAAAGCCAATGTAGTATAATACACCTTGAGTAG
8009116 AAAGTCGATG
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 16 0.30
54 37 0.70
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (53 bp):
GTGATAGATTACCATCCGGGTAAAGCCAATGTAGTATAATACACCTTGAGTAG
Found at i:8013252 original size:10 final size:10
Alignment explanation
Indices: 8013227--8013298 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
8013217 ACATATAAGT
8013227 ATATATATAC
1 ATATATATAC
*
8013237 ACATATATAC
1 ATATATATAC
*
8013247 -T-TATATGC
1 ATATATATAC
8013255 ATA-AGTATAC
1 ATATA-TATAC
* *
8013265 TTATATATAT
1 ATATATATAC
*
8013275 ATATATACAC
1 ATATATATAC
*
8013285 TTATATATATC
1 ATATATATA-C
8013296 ATA
1 ATA
8013299 ATTTATTTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 9
0.68 0.18 0.14
Matches are distributed among these distances:
8 6 0.13
9 2 0.04
10 33 0.73
11 4 0.09
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (10 bp):
ATATATATAC
Found at i:8013281 original size:18 final size:18
Alignment explanation
Indices: 8013239--8013294 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 18
8013229 ATATATACAC
**
8013239 ATATATACTTATATGCAT
1 ATATATACTTATATATAT
8013257 A-AGTATACTTATATATAT
1 ATA-TATACTTATATATAT
8013275 ATATATACACTTATATATAT
1 ATATAT--ACTTATATATAT
8013295 CATAATTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 1 0.03
18 18 0.56
19 1 0.03
20 12 0.38
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (18 bp):
ATATATACTTATATATAT
Found at i:8013379 original size:8 final size:8
Alignment explanation
Indices: 8013366--8013763 Score: 616
Period size: 8 Copynumber: 51.6 Consensus size: 8
8013356 AACATGCATG
8013366 TATATTTA
1 TATATTTA
8013374 TATATTTA
1 TATATTTA
8013382 TATATTTA
1 TATATTTA
8013390 TATATTTA
1 TATATTTA
8013398 TATATTTA
1 TATATTTA
8013406 TATATTTA
1 TATATTTA
8013414 TATATTTA
1 TATATTTA
8013422 TATATTTA
1 TATATTTA
8013430 TATATTTA
1 TATATTTA
8013438 TATA--TA
1 TATATTTA
8013444 TATATTTA
1 TATATTTA
8013452 TATA-TTA
1 TATATTTA
8013459 TATA--TA
1 TATATTTA
8013465 T-TATTTA
1 TATATTTA
8013472 TATA-TT-
1 TATATTTA
8013478 TATA-TT-
1 TATATTTA
8013484 TATATTTA
1 TATATTTA
8013492 TATATTTA
1 TATATTTA
8013500 TAT-TTATA
1 TATATT-TA
8013508 TTTATATTT-
1 --TATATTTA
8013517 TATA-TTA
1 TATATTTA
8013524 TATATTTA
1 TATATTTA
8013532 TATA-TTA
1 TATATTTA
8013539 TATATTTA
1 TATATTTA
*
8013547 TATATATA
1 TATATTTA
*
8013555 T-TATATA
1 TATATTTA
*
8013562 TTTA-TTA
1 TATATTTA
8013569 TATATTTA
1 TATATTTA
8013577 TATATTTA
1 TATATTTA
8013585 TATATTTA
1 TATATTTA
8013593 TATATTTA
1 TATATTTA
8013601 TATATTTA
1 TATATTTA
8013609 TATATTTA
1 TATATTTA
8013617 TATATTTA
1 TATATTTA
8013625 TATATTTA
1 TATATTTA
8013633 TATATTTA
1 TATATTTA
8013641 TATATTTA
1 TATATTTA
8013649 TATA-TTA
1 TATATTTA
8013656 TATATTTA
1 TATATTTA
8013664 TATATTTA
1 TATATTTA
8013672 TATATTTA
1 TATATTTA
8013680 TATA-TTA
1 TATATTTA
8013687 TATATTTA
1 TATATTTA
8013695 TATATTTA
1 TATATTTA
8013703 TATATTTA
1 TATATTTA
8013711 TATATTTA
1 TATATTTA
8013719 TATATTTA
1 TATATTTA
8013727 TATATTTA
1 TATATTTA
8013735 TATATTTA
1 TATATTTA
8013743 TATATTTA
1 TATATTTA
8013751 TATATTTA
1 TATATTTA
8013759 TATAT
1 TATAT
8013764 AAGCAACTTG
Statistics
Matches: 369, Mismatches: 3, Indels: 36
0.90 0.01 0.09
Matches are distributed among these distances:
5 2 0.01
6 21 0.06
7 57 0.15
8 283 0.77
10 4 0.01
11 2 0.01
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTTA
Found at i:8015461 original size:22 final size:22
Alignment explanation
Indices: 8015436--8015493 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
8015426 AAGTGCTAAG
8015436 GCACTTTAGTATCAGTGCATAT
1 GCACTTTAGTATCAGTGCATAT
*
8015458 GCACTTTAGTATCAGTGCATTT
1 GCACTTTAGTATCAGTGCATAT
*
8015480 GCACTTTTGTATCA
1 GCACTTTAGTATCA
8015494 TTCTTGAGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (22 bp):
GCACTTTAGTATCAGTGCATAT
Found at i:8020675 original size:14 final size:14
Alignment explanation
Indices: 8020656--8020920 Score: 80
Period size: 14 Copynumber: 18.9 Consensus size: 14
8020646 TGCATCCATT
8020656 ATATATATATATTA
1 ATATATATATATTA
8020670 ATATATATA-A--A
1 ATATATATATATTA
* *
8020681 AGTATGT-TAATTTTA
1 A-TATATAT-ATATTA
* *
8020696 TTATATATATACATAA
1 --ATATATATATATTA
8020712 ATATATACTTATATTA
1 ATATATA--TATATTA
* *
8020728 ACT-TATGTCTTAT-A
1 A-TATATAT-ATATTA
8020742 ATATATATA-ATATA
1 ATATATATATAT-TA
*
8020756 ATAATATATAACATATA
1 AT-ATATAT-ATAT-TA
*
8020773 ATATA-ACATATATA
1 ATATATATATAT-TA
*
8020787 GTATATATATATT-
1 ATATATATATATTA
8020800 ATATATATATA-T-
1 ATATATATATATTA
8020812 ATATATATATATATA
1 ATATATATATAT-TA
8020827 ATATATATAATATTTA
1 ATATATAT-ATA-TTA
8020843 A-ATA-A-A-ATTAA
1 ATATATATATATT-A
* * *
8020854 AAAAATTATATATAA
1 ATATA-TATATATTA
* **
8020869 ATATACATGCATGT-
1 ATATATATATAT-TA
8020883 ATATATATATA-T-
1 ATATATATATATTA
*
8020895 ATATATATATATTT
1 ATATATATATATTA
*
8020909 ATATATTTATAT
1 ATATATATATAT
8020921 ATAAGCAACT
Statistics
Matches: 189, Mismatches: 29, Indels: 66
0.67 0.10 0.23
Matches are distributed among these distances:
10 2 0.01
11 6 0.03
12 34 0.18
13 13 0.07
14 63 0.33
15 32 0.17
16 28 0.15
17 11 0.06
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.45
Consensus pattern (14 bp):
ATATATATATATTA
Found at i:8020749 original size:2 final size:2
Alignment explanation
Indices: 8020738--8020923 Score: 137
Period size: 2 Copynumber: 99.0 Consensus size: 2
8020728 ACTTATGTCT
*
8020738 TA TA -A TA TA TA TA -A TA TA -A TA -A TA TA TA -A CA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8020774 TA TA -A CA TA TA TA GTA TA TA TA TA T- TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
8020815 TA TA TA TA TA TA -A TA TA TA TA -A TA TT TA AA TA -A AA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * *
8020853 AA AA AA T- TA TA TA TA AA TA TA CA TG CA TG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
8020894 TA TA TA TA TA TA TT TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8020924 AGCAACTTGA
Statistics
Matches: 147, Mismatches: 23, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
1 13 0.09
2 132 0.90
3 2 0.01
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
TA
Found at i:8020793 original size:47 final size:49
Alignment explanation
Indices: 8020742--8020921 Score: 140
Period size: 47 Copynumber: 3.8 Consensus size: 49
8020732 ATGTCTTATA
8020742 ATATATATAATATA-ATA-ATATATAACATATA-ATATAACATATATAGT
1 ATATATATAATATATATATATATAT-ACATATATATATAACATATATAGT
* * * *
8020789 ATATATATATTATATATATATATATATATATATATATAATATATATAAT
1 ATATATATAATATATATATATATATACATATATATATAACATATATAGT
* * * * * * * * **
8020838 ATTTAAATAAAAT-TAAAAAAAT-TATATATAAATAT-ACATGCAT-GT
1 ATATATATAATATATATATATATATACATATATATATAACATATATAGT
* * *
8020883 ATATATATATATATATATATATATTTATATATTTATATA
1 ATATATATA-ATATATATATATATATACATATATATATA
8020922 TAAGCAACTT
Statistics
Matches: 102, Mismatches: 24, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
45 8 0.08
46 8 0.08
47 31 0.30
48 26 0.25
49 29 0.28
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (49 bp):
ATATATATAATATATATATATATATACATATATATATAACATATATAGT
Found at i:8020795 original size:49 final size:49
Alignment explanation
Indices: 8020742--8020921 Score: 129
Period size: 49 Copynumber: 3.7 Consensus size: 49
8020732 ATGTCTTATA
*
8020742 ATATATATAATATA-ATAATATATA-ACATATAATATAACATATATAGTAT
1 ATATATATAATATATAT-ATATATACATATAT-ATATAACATATATAGTAT
* * * *
8020791 ATATATATTATATATATATATATATATATATATATAATATATATAATAT
1 ATATATATAATATATATATATATACATATATATATAACATATATAGTAT
* * * * * * * * **
8020840 TTAAATAAAAT-TAAAAAAAT-TATATATAAATAT-ACATGCAT-GTAT
1 ATATATATAATATATATATATATACATATATATATAACATATATAGTAT
* * *
8020885 ATATATATATATATATATATATTTATATATTTATATA
1 ATATATATA-ATATATATATATATACATATATATATA
8020922 TAAGCAACTT
Statistics
Matches: 101, Mismatches: 24, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
45 9 0.09
46 7 0.07
47 18 0.18
48 17 0.17
49 43 0.43
50 7 0.07
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (49 bp):
ATATATATAATATATATATATATACATATATATATAACATATATAGTAT
Found at i:8021179 original size:117 final size:111
Alignment explanation
Indices: 8020951--8021184 Score: 337
Period size: 117 Copynumber: 2.0 Consensus size: 111
8020941 TGCACACGGA
8020951 TTGAAGTTGGCAATCCTGAAAATCACAACACCATTAATGAATAAAAGGCAAGGGCCCAACCCATT
1 TTGAAGTTGGCAATCCTGAAAATCACAACACCATTAATGAATAAAAGGCAAGGGCCCAACCCATT
8021016 TTTCTTCCAAATCGGTGGTAACATATCTTGGGTTTTTTTTTCTTTTTCTTT
66 TTTCTTCCAAATCGGTGGTAACATATCTTGGG----TTTTTCTTTTT-TTT
8021067 TTGAAGTTGGCAATCCTTGAAAATCACAACACCATTAATGAA-ATAAAGGCAAGGGCCCAACCCA
1 TTGAAGTTGGCAATCC-TGAAAATCACAACACCATTAATGAATA-AAAGGCAAGGGCCCAACCCA
8021131 TTTTTCTTCTTCAAATCCGGTGGTAACATATAATCTTGGGTTTTT-TTTTTTTT
64 TTTTTCTTC--CAAAT-CGGTGGTAAC--AT-ATCTTGGGTTTTTCTTTTTTTT
8021184 T
1 T
8021185 CTTTAATTCG
Statistics
Matches: 110, Mismatches: 0, Indels: 15
0.88 0.00 0.12
Matches are distributed among these distances:
116 17 0.15
117 58 0.53
118 5 0.05
119 10 0.09
120 10 0.09
122 2 0.02
123 8 0.07
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (111 bp):
TTGAAGTTGGCAATCCTGAAAATCACAACACCATTAATGAATAAAAGGCAAGGGCCCAACCCATT
TTTCTTCCAAATCGGTGGTAACATATCTTGGGTTTTTCTTTTTTTT
Found at i:8021320 original size:53 final size:54
Alignment explanation
Indices: 8021231--8021336 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 54
8021221 CGTTTTAACT
8021231 GGGTTTTATATATTTATTTTTATTATTATAATTCAATATATATATATATATATG
1 GGGTTTTATATATTTATTTTTATTATTATAATTCAATATATATATATATATATG
8021285 GGGTTTTATATATTTA-TTTTATTATTATAATTCAATATATATATATATATAT
1 GGGTTTTATATATTTATTTTTATTATTATAATTCAATATATATATATATATAT
8021337 ATTGTTTATA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 36 0.69
54 16 0.31
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (54 bp):
GGGTTTTATATATTTATTTTTATTATTATAATTCAATATATATATATATATATG
Found at i:8023464 original size:20 final size:20
Alignment explanation
Indices: 8023441--8023481 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8023431 TATTTATTAA
*
8023441 TTTTTGACTATTTTTATTTT
1 TTTTTGACTAATTTTATTTT
**
8023461 TTTTTGTTTAATTTTATTTT
1 TTTTTGACTAATTTTATTTT
8023481 T
1 T
8023482 CCCTTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTTGACTAATTTTATTTT
Found at i:8024529 original size:16 final size:17
Alignment explanation
Indices: 8024500--8024538 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
8024490 AAGCATGTTC
8024500 GGGTAGATTATCATGTG
1 GGGTAGATTATCATGTG
8024517 GGGTAGA-TATCATGTG
1 GGGTAGATTATCATGTG
8024533 GGGTAG
1 GGGTAG
8024539 GACTTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.23, C:0.05, G:0.41, T:0.31
Consensus pattern (17 bp):
GGGTAGATTATCATGTG
Found at i:8027226 original size:106 final size:106
Alignment explanation
Indices: 8027041--8028340 Score: 2305
Period size: 106 Copynumber: 12.3 Consensus size: 106
8027031 TACAGCCTTT
* *
8027041 AGAGCCAATTTCAACTTCACAACGAAAGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
8027106 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* * *
8027147 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027212 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* * * *
8027253 GGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027318 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8027359 GGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
8027424 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* * *
8027465 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027530 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* * * *
8027571 GGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027636 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8027677 GGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027742 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8027783 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTAAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027848 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8027889 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8027954 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8027995 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTAAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8028060 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8028101 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
* *
8028166 CGAAGGGATCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8028207 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
*
8028272 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8028313 AGAGCCAATTTCAACTTCAC-GACGAAGG
1 AGAGCCAATTTCAACTTCACAG-CGAAGG
8028341 GACCGCTGGT
Statistics
Matches: 1166, Mismatches: 27, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
105 1 0.00
106 1165 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (106 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
Found at i:8030977 original size:19 final size:19
Alignment explanation
Indices: 8030955--8030994 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8030945 TATTTATTAA
*
8030955 TTTTTGACTATTTTTATTT
1 TTTTTGACTAATTTTATTT
**
8030974 TTTTTGTTTAATTTTATTT
1 TTTTTGACTAATTTTATTT
8030993 TT
1 TT
8030995 CCCTTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.78
Consensus pattern (19 bp):
TTTTTGACTAATTTTATTT
Found at i:8031415 original size:2 final size:2
Alignment explanation
Indices: 8031410--8031449 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
8031400 AAAAAAGTAA
* * *
8031410 AT AT AT AT GT AT AT GT AT AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8031450 TAAATGAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8031611 original size:2 final size:2
Alignment explanation
Indices: 8031604--8031635 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8031594 ATTAATCTTT
8031604 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8031636 AAATTTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8032444 original size:6 final size:6
Alignment explanation
Indices: 8032435--8032472 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
8032425 ATTTATTACT
*
8032435 ATTCAA ATTCAA ATTCAA ATTCAA ATTCGA ATT-AA ATT
1 ATTCAA ATTCAA ATTCAA ATTCAA ATTCAA ATTCAA ATT
8032473 TTATTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (6 bp):
ATTCAA
Found at i:8032955 original size:2 final size:2
Alignment explanation
Indices: 8032948--8032977 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8032938 TCTAACCATA
8032948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8032978 CTTTCATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8034132 original size:20 final size:20
Alignment explanation
Indices: 8034107--8034156 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
8034097 AAAGAAGTAA
8034107 GGATTTTAGGATTAAATTAG
1 GGATTTTAGGATTAAATTAG
8034127 GGATTTTAGGATTAAATTAG
1 GGATTTTAGGATTAAATTAG
8034147 GGATTTTAGG
1 GGATTTTAGG
8034157 GTTTCTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (20 bp):
GGATTTTAGGATTAAATTAG
Found at i:8035840 original size:20 final size:19
Alignment explanation
Indices: 8035803--8035851 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
8035793 GAAAAAACAA
*
8035803 AATAAT-AATGAAATATTAAT
1 AATAATAAAT-AAAAATT-AT
8035823 AATAATAAATAAAAATTAT
1 AATAATAAATAAAAATTAT
8035842 -A-AATAAATAA
1 AATAATAAATAA
8035852 TATAAATCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 9 0.33
18 1 0.04
19 2 0.07
20 12 0.44
21 3 0.11
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
AATAATAAATAAAAATTAT
Found at i:8035845 original size:13 final size:13
Alignment explanation
Indices: 8035820--8035858 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
8035810 ATGAAATATT
8035820 AATAATAATAAATA
1 AATAAT-ATAAATA
8035834 AA-AATTATAAATA
1 AATAA-TATAAATA
8035847 AATAATATAAAT
1 AATAATATAAAT
8035859 CCTGACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAATATAAATA
Found at i:8036713 original size:42 final size:42
Alignment explanation
Indices: 8036654--8036739 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
8036644 TTGGTATAAG
*
8036654 ATGCTTCAATCATGAGTTCGTTGTCACTGTTATGATATATAT
1 ATGCTTCAATCATGAGTTCGTTGTCACTGTTATAATATATAT
* *
8036696 ATGCTTTAATCATGAGTTCGTTGTTACTGTTATAATATATAT
1 ATGCTTCAATCATGAGTTCGTTGTCACTGTTATAATATATAT
8036738 AT
1 AT
8036740 ATATATAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (42 bp):
ATGCTTCAATCATGAGTTCGTTGTCACTGTTATAATATATAT
Found at i:8040636 original size:31 final size:31
Alignment explanation
Indices: 8040599--8040757 Score: 84
Period size: 31 Copynumber: 5.3 Consensus size: 31
8040589 GGAAATTCAT
8040599 ACACTTAGTGTGATTTCCCTATCATTTTAGC
1 ACACTTAGTGTGATTTCCCTATCATTTTAGC
* * * * ** *
8040630 ACACTTA--GTG--CTCCATATGGAAATCCA-T
1 ACACTTAGTGTGATTTCCCTAT--CATTTTAGC
* *
8040658 ACACTTAGTATGATTTCCTTATCATTTTAGC
1 ACACTTAGTGTGATTTCCCTATCATTTTAGC
* ** * * *
8040689 ACACTTAGTGCT-ATAT--CTAGAAATTCA-T
1 ACACTTAGTG-TGATTTCCCTATCATTTTAGC
*
8040717 ACACTTAGTATGATTTCCCTATCATTTTAGC
1 ACACTTAGTGTGATTTCCCTATCATTTTAGC
8040748 ACACTTAGTG
1 ACACTTAGTG
8040758 CTATTTTGGT
Statistics
Matches: 85, Mismatches: 31, Indels: 24
0.61 0.22 0.17
Matches are distributed among these distances:
27 7 0.08
28 19 0.22
29 12 0.14
30 12 0.14
31 28 0.33
32 7 0.08
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (31 bp):
ACACTTAGTGTGATTTCCCTATCATTTTAGC
Found at i:8040682 original size:177 final size:171
Alignment explanation
Indices: 8040294--8040759 Score: 593
Period size: 177 Copynumber: 2.7 Consensus size: 171
8040284 TCTATAAATT
* * * ** * *
8040294 CTATA-GGAAATTCATACAATTAGTACGATTTGGTTA-CAATTTTATTACACTTAGTGCTCTATA
1 CTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-ATTTTAGTACACTTAGTGCTCTATC
* * * *
8040357 TGGAAATTAATACACTTAGTATGATTTCGCC-ATCATTTTAG-CACGTGAAGTGCCCTATCTTGA
65 TGGAAATTCATACACTTAGTATGATTTC-CCTATCATTTTAGACAC-T-TAGTGCTCTATCTGGA
8040420 AATCCATACACTTAGTTTCCCTATCATTTTAGCACACGAAGTGCC
127 AATCCATACACTTAGTTTCCCTATCATTTTAGCACACGAAGTGCC
* *
8040465 CTCTTTGGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGTACACTTAGTGCTCTATCT
1 CTATATGGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGTACACTTAGTGCTCTATCT
*
8040530 GGAAATTCATACGA-ATAGTATGATTTCCCTATCATTTTAAGACACTTAGTGCTCTATCTGGAAA
66 GGAAATTCATAC-ACTTAGTATGATTTCCCTATCATTTT-AGACACTTAGTGCTCTATCTGGAAA
* **
8040594 TTCATACACTTAGTGTGATTTCCCTATCATTTTAGCACACTTAGTGCTC
129 TCCATACACTTA----G-TTTCCCTATCATTTTAGCACACGAAGTGC-C
* *
8040643 C-ATATGGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGCACACTTAGTGCTATATCT
1 CTATATGGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGTACACTTAGTGCTCTATCT
*
8040707 AGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCT
66 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAG-ACACTTAGTGCT
8040760 ATTTTGGTAA
Statistics
Matches: 258, Mismatches: 23, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
171 5 0.02
172 107 0.41
173 5 0.02
174 3 0.01
176 4 0.02
177 132 0.51
178 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (171 bp):
CTATATGGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGTACACTTAGTGCTCTATCT
GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGACACTTAGTGCTCTATCTGGAAATC
CATACACTTAGTTTCCCTATCATTTTAGCACACGAAGTGCC
Found at i:8040761 original size:59 final size:59
Alignment explanation
Indices: 8040299--8040759 Score: 537
Period size: 59 Copynumber: 7.9 Consensus size: 59
8040289 AAATTCTATA
* * *** ** *
8040299 GGAAATTCATACAATTAGTACGATTTGGTTA-CAATTTTATTACACTTAGTGCTCTATAT
1 GGAAATTCATACACTTAGTATGATTTCCCTATC-ATTTTAGCACACTTAGTGCTCTATCT
* * * *
8040358 GGAAATTAATACACTTAGTATGATTTCGCC-ATCATTTTAGCAC-GTGAAGTGCCCTATCT
1 GGAAATTCATACACTTAGTATGATTTC-CCTATCATTTTAGCACACT-TAGTGCTCTATCT
* * ** * * *
8040417 TGAAATCCATACAC-T--TA-G-TTTCCCTATCATTTTAGCACACGAAGTGCCCTCTTT
1 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCTCTATCT
* * *
8040471 GGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGTACACTTAGTGCTCTATCT
1 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCTCTATCT
*
8040530 GGAAATTCATACGA-ATAGTATGATTTCCCTATCATTTTAAG-ACACTTAGTGCTCTATCT
1 GGAAATTCATAC-ACTTAGTATGATTTCCCTATCATTTT-AGCACACTTAGTGCTCTATCT
* * *
8040589 GGAAATTCATACACTTAGTGTGATTTCCCTATCATTTTAGCACACTTAGTGCTCCATAT
1 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCTCTATCT
* * *
8040648 GGAAATCCATACACTTAGTATGATTTCCTTATCATTTTAGCACACTTAGTGCTATATCT
1 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCTCTATCT
*
8040707 AGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCT
1 GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCT
8040760 ATTTTGGTAA
Statistics
Matches: 345, Mismatches: 43, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
53 2 0.01
54 41 0.12
55 2 0.01
56 2 0.01
57 2 0.01
58 6 0.02
59 286 0.83
60 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (59 bp):
GGAAATTCATACACTTAGTATGATTTCCCTATCATTTTAGCACACTTAGTGCTCTATCT
Found at i:8041111 original size:22 final size:23
Alignment explanation
Indices: 8041078--8041122 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
8041068 TCAGTATTGA
8041078 TACCTCTACTATGGTATCGATAC
1 TACCTCTACTATGGTATCGATAC
8041101 TACC-CTACTATGGTATCGATAC
1 TACCTCTACTATGGTATCGATAC
8041123 CCCCTTCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (23 bp):
TACCTCTACTATGGTATCGATAC
Found at i:8041271 original size:93 final size:95
Alignment explanation
Indices: 8041071--8041288 Score: 262
Period size: 93 Copynumber: 2.3 Consensus size: 95
8041061 TGGCCCTTCA
* * * * * *
8041071 GTATTGATA-CCTCTACTATGGTATCGATACTACCCTACTATGGTATCGATACCCCCTTCTTGTA
1 GTATCGATACCCTC-ACTATGGTATCGATACTACCATACTATGGTACCAATACCCCCTACTGGTA
*
8041135 TCGATACCAAAATTAGCTTCGATGTAACATG
65 TCGATACCAAAATTAGCTTCAATGTAACATG
* * *
8041166 GTATCGATACCCTCACTATGGTATTGATACTACTATGCTATGGTACCAATACCCCC-AC-GGTAT
1 GTATCGATACCCTCACTATGGTATCGATACTACCATACTATGGTACCAATACCCCCTACTGGTAT
* * **
8041229 CGATACCAAAATTTGGTTCAATGTTTCATG
66 CGATACCAAAATTAGCTTCAATGTAACATG
* *
8041259 GTATCGATACCCTTACCATGGTATCGATAC
1 GTATCGATACCCTCACTATGGTATCGATAC
8041289 CCTTACCATG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
93 56 0.53
94 1 0.01
95 44 0.42
96 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (95 bp):
GTATCGATACCCTCACTATGGTATCGATACTACCATACTATGGTACCAATACCCCCTACTGGTAT
CGATACCAAAATTAGCTTCAATGTAACATG
Found at i:8041280 original size:20 final size:20
Alignment explanation
Indices: 8041255--8041328 Score: 148
Period size: 20 Copynumber: 3.7 Consensus size: 20
8041245 TTCAATGTTT
8041255 CATGGTATCGATACCCTTAC
1 CATGGTATCGATACCCTTAC
8041275 CATGGTATCGATACCCTTAC
1 CATGGTATCGATACCCTTAC
8041295 CATGGTATCGATACCCTTAC
1 CATGGTATCGATACCCTTAC
8041315 CATGGTATCGATAC
1 CATGGTATCGATAC
8041329 TACATCGTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (20 bp):
CATGGTATCGATACCCTTAC
Found at i:8044482 original size:13 final size:13
Alignment explanation
Indices: 8044464--8044498 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8044454 TAAGGAGTAC
8044464 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
8044477 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
8044490 AAAAAGAAA
1 AAAAAGAAA
8044499 GAATTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:8059010 original size:18 final size:18
Alignment explanation
Indices: 8058987--8059051 Score: 103
Period size: 18 Copynumber: 3.6 Consensus size: 18
8058977 TCCCAACTTC
*
8058987 TAGTGTTTATGTTGACAT
1 TAGTGTTTATGTTCACAT
*
8059005 TAGTGTTTATGTTCATAT
1 TAGTGTTTATGTTCACAT
8059023 TAGTGTTTATGTTCACAT
1 TAGTGTTTATGTTCACAT
*
8059041 TAGGGTTTATG
1 TAGTGTTTATG
8059052 GAATTGATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.22, C:0.06, G:0.22, T:0.51
Consensus pattern (18 bp):
TAGTGTTTATGTTCACAT
Found at i:8061460 original size:61 final size:61
Alignment explanation
Indices: 8061351--8061479 Score: 159
Period size: 61 Copynumber: 2.1 Consensus size: 61
8061341 GATGACACTA
*** * *
8061351 AGTGCAGGCGGTGAGAACAACCTTATGTGTCATATTTGGATCAACACTATAGTGTAAACCT
1 AGTGCAGGCGGTGAGAACAACCTTATGTGTCATATCCAGATCAACACTAGAGCGTAAACCT
* * * * * *
8061412 AGTGTAGGTGGTGGGAACAACCTTATGTGTCATATCCAGATTAGCACTAGAGCGTAAACTT
1 AGTGCAGGCGGTGAGAACAACCTTATGTGTCATATCCAGATCAACACTAGAGCGTAAACCT
8061473 AGTGCAG
1 AGTGCAG
8061480 ATTTAACACT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (61 bp):
AGTGCAGGCGGTGAGAACAACCTTATGTGTCATATCCAGATCAACACTAGAGCGTAAACCT
Found at i:8066349 original size:229 final size:233
Alignment explanation
Indices: 8065942--8066406 Score: 884
Period size: 229 Copynumber: 2.0 Consensus size: 233
8065932 AAGAGTACAA
8065942 TATCAACTTTCTTGCCTCTCGTTGTGTTACATTTTTGTAGTGATTTGTGAGGTTTTTTATTGTTT
1 TATCAACTTTCTTGCCTCTCGTTGTGTTACATTTTTGTAGTGATTTGTGAGG--TTTTATTGTTT
8066007 TCTTTTATCTTTTCCACTTTAAATTTTATTTTGAGTGTTGCGATTCTCAGAATGGATAACAAAGG
64 TCTTTTATCTTTTCCACTTTAAATTTTATTTTGAGTGTTGCGATTCTCAGAATGGATAACAAAGG
8066072 AAACATCAATTAAACCCTTGATATTCTTTTGGCAACAATGAACAAACTTTCACAACAATTTACTG
129 AAACATCAATTAAACCCTTGATATTCTTTTGGCAACAATGAACAAACTTTCACAACAATTTACTG
8066137 AACTCAACACCATATTGAGACAACATCAACAACCACATAT
194 AACTCAACACCATATTGAGACAACATCAACAACCACATAT
8066177 TATCAACTTTCTTGCCTCTCGTTGTGTTACATTTTTGTAGTGATTTGTGAGG-TTT-TT-TTTTC
1 TATCAACTTTCTTGCCTCTCGTTGTGTTACATTTTTGTAGTGATTTGTGAGGTTTTATTGTTTTC
8066239 TTTTATCTTTTCCACTTTAAATTTTA-TTTGAGTGTTGCGATTCTCAGAATGGATAACAAAGGAA
66 TTTTATCTTTTCCACTTTAAATTTTATTTTGAGTGTTGCGATTCTCAGAATGGATAACAAAGGAA
8066303 ACATCAATTAAACCCTTGATATTCTTTTGGCAACAATGAACAAACTTTCACAACAATTTACTGAA
131 ACATCAATTAAACCCTTGATATTCTTTTGGCAACAATGAACAAACTTTCACAACAATTTACTGAA
8066368 CTCAACACCATATTGAGACAACATCAACAACCACATAT
196 CTCAACACCATATTGAGACAACATCAACAACCACATAT
8066406 T
1 T
8066407 GATTAACCGA
Statistics
Matches: 230, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
229 142 0.62
230 31 0.13
231 2 0.01
232 3 0.01
235 52 0.23
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (233 bp):
TATCAACTTTCTTGCCTCTCGTTGTGTTACATTTTTGTAGTGATTTGTGAGGTTTTATTGTTTTC
TTTTATCTTTTCCACTTTAAATTTTATTTTGAGTGTTGCGATTCTCAGAATGGATAACAAAGGAA
ACATCAATTAAACCCTTGATATTCTTTTGGCAACAATGAACAAACTTTCACAACAATTTACTGAA
CTCAACACCATATTGAGACAACATCAACAACCACATAT
Found at i:8070036 original size:24 final size:25
Alignment explanation
Indices: 8070009--8070068 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
8069999 ATGGATCACA
* *
8070009 AAAAGTCATGA-CTATTGGTTTTTC
1 AAAAGTCATGATCTATTAGTTTTCC
* *
8070033 AAAAGTCA-CATCTTTTAGTTTTCC
1 AAAAGTCATGATCTATTAGTTTTCC
8070057 AAAAGTCATGAT
1 AAAAGTCATGAT
8070069 TCTTGAATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.03
24 26 0.90
25 2 0.07
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (25 bp):
AAAAGTCATGATCTATTAGTTTTCC
Found at i:8073402 original size:32 final size:32
Alignment explanation
Indices: 8073366--8073432 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
8073356 ACGGTGCATT
* *
8073366 ATAGGCATTAAAGGATGCCATAAATG-AGATGC
1 ATAGGCATGAAAGGATACCATAAATGTA-ATGC
*
8073398 ATAGGCATGAAAGGATACCATATATGTAATGC
1 ATAGGCATGAAAGGATACCATAAATGTAATGC
8073430 ATA
1 ATA
8073433 ATGGTGCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 30 0.97
33 1 0.03
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (32 bp):
ATAGGCATGAAAGGATACCATAAATGTAATGC
Found at i:8073510 original size:77 final size:75
Alignment explanation
Indices: 8073349--8073588 Score: 187
Period size: 77 Copynumber: 3.0 Consensus size: 75
8073339 AATATATGAG
* * * * **
8073349 ATGCATAACGGTGCATTATAGGCATTAAAGGATGCCATAAATGAGATGCATAGGCA-TGAAAGGA
1 ATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAGATGCATA-ACAGTG-CATTA
* *
8073413 TA-CCATATATGT
64 TAGGCATA-AAGT
8073425 AATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAGATGCATAACAGTGCATTAT
1 -ATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAGATGCATAACAGTGCATTAT
8073490 AGGCATGAAAGT
65 AGGCAT-AAAGT
* *
8073502 ATGTCATAAATGTGATGCATAACGGTGCATTATTGGCATGAAAGGATACCATAAATGAAATGCAT
1 ATG-CAT-AATG-G-TGCAT-----T--A-TA--GGCATGAAAGGATGCCATAAATGAGATGCAT
* *
8073567 AACGGTGCATTATTGGCATAAA
52 AACAGTGCATTATAGGCATAAA
8073589 AGGATGCCAT
Statistics
Matches: 134, Mismatches: 12, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
76 9 0.07
77 61 0.46
78 5 0.04
79 1 0.01
80 5 0.04
85 1 0.01
87 1 0.01
88 2 0.01
89 3 0.02
90 46 0.34
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (75 bp):
ATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAGATGCATAACAGTGCATTATA
GGCATAAAGT
Found at i:8073548 original size:135 final size:136
Alignment explanation
Indices: 8073401--8073649 Score: 385
Period size: 135 Copynumber: 1.8 Consensus size: 136
8073391 GAGATGCATA
* * * *
8073401 GGCATGAAAGGATACCATATATGTAATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAA
1 GGCATGAAAGGATACCATAAATGAAATGCATAACGGTGCATTATAGGCATAAAAGGATGCCATAA
* * *
8073466 ATG-AGATGCATAACAGTGCATTATAGGCATGAAAGTATG-TCATAAATGTGATGCATAACGGTG
66 ATGAAAATACATAACAGTGCATTATAAGCATGAAAGTATGCT-ATAAATGTGATGCATAACGGTG
8073529 CATTATT
130 CATTATT
*
8073536 GGCATGAAAGGATACCATAAATGAAATGCATAACGGTGCATTATTGGCATAAAAGGATGCCATAA
1 GGCATGAAAGGATACCATAAATGAAATGCATAACGGTGCATTATAGGCATAAAAGGATGCCATAA
* *
8073601 ATGAAAATACATAACGGTGCATTATAAGCATGAAATTATGCTATAAATG
66 ATGAAAATACATAACAGTGCATTATAAGCATGAAAGTATGCTATAAATG
8073650 AAAATAAAGT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
135 63 0.62
136 38 0.37
137 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (136 bp):
GGCATGAAAGGATACCATAAATGAAATGCATAACGGTGCATTATAGGCATAAAAGGATGCCATAA
ATGAAAATACATAACAGTGCATTATAAGCATGAAAGTATGCTATAAATGTGATGCATAACGGTGC
ATTATT
Found at i:8073604 original size:45 final size:45
Alignment explanation
Indices: 8073398--8073652 Score: 330
Period size: 45 Copynumber: 5.6 Consensus size: 45
8073388 AATGAGATGC
* * * *
8073398 ATAGGCATGAAAGGATACCATATATGTAATGCATAATGGTGCATT
1 ATAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATT
* *
8073443 ATAGGCATGAAAGGATGCCATAAATGAGATGCATAACAGTGCATT
1 ATAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATT
* * **
8073488 ATAGGCATGAAAGTATGTCATAAATGTGATGCATAACGGTGCATT
1 ATAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATT
* *
8073533 ATTGGCATGAAAGGATACCATAAATGAAATGCATAACGGTGCATT
1 ATAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATT
* * *
8073578 ATTGGCATAAAAGGATGCCATAAATGAAAATACATAACGGTGCATT
1 ATAGGCATGAAAGGATGCCATAAATG-AAATGCATAACGGTGCATT
* ** *
8073624 ATAAGCATGAAATTATGCTATAAATGAAA
1 ATAGGCATGAAAGGATGCCATAAATGAAA
8073653 ATAAAGTATA
Statistics
Matches: 184, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 146 0.79
46 38 0.21
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.26
Consensus pattern (45 bp):
ATAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATT
Found at i:8079914 original size:97 final size:95
Alignment explanation
Indices: 8079797--8079998 Score: 228
Period size: 97 Copynumber: 2.1 Consensus size: 95
8079787 ACTACTATAG
* * * * *
8079797 GTATCAATATTAAGACAAAGGTATCGATAACATAGATT-CTAGAATATA-ACAATGGTATCGATA
1 GTATCGATACTAAGACAAAGGTAGCGATAACATAGATTAC-AGAATATAGA-AATAGTATCAATA
*
8079860 CTGAAAGGGAGTATCGATACCATAATATATAGAA
64 CTGAAAGGGAATATCGATACCAT-A-ATATAGAA
* * * * *
8079894 GTATCGATACTAAGAGAAAGGTAGCGATACCATGGATTACATAATTTAGAAATAGTATCAATACT
1 GTATCGATACTAAGACAAAGGTAGCGATAACATAGATTACAGAATATAGAAATAGTATCAATACT
* * *
8079959 GAAAGGTAATATCGGTACCATAGTATAGAA
66 GAAAGGGAATATCGATACCATAATATAGAA
8079989 GTATCGATAC
1 GTATCGATAC
8079999 CATGGTAGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
95 17 0.19
96 1 0.01
97 69 0.78
98 2 0.02
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.27
Consensus pattern (95 bp):
GTATCGATACTAAGACAAAGGTAGCGATAACATAGATTACAGAATATAGAAATAGTATCAATACT
GAAAGGGAATATCGATACCATAATATAGAA
Found at i:8080541 original size:24 final size:23
Alignment explanation
Indices: 8080472--8080541 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
8080462 GATGCCATAA
*
8080472 ATGAGATGCATAATGATGCATTAT
1 ATGA-ATGCATAACGATGCATTAT
* *
8080496 ATGCATG-A-AAGGATGCCA-TAT
1 ATGAATGCATAACGATG-CATTAT
8080517 ATGTAATGCATAACGATGCATTAT
1 ATG-AATGCATAACGATGCATTAT
8080541 A
1 A
8080542 GGCATGAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
21 12 0.32
22 6 0.16
23 6 0.16
24 13 0.35
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (23 bp):
ATGAATGCATAACGATGCATTAT
Found at i:8080702 original size:45 final size:45
Alignment explanation
Indices: 8080427--8080700 Score: 361
Period size: 45 Copynumber: 6.1 Consensus size: 45
8080417 GGACGAATAT
* * * *
8080427 ATGAGATGCATAATGGTACATTATAGGCATAAAAGGATGCCATAA
1 ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
* * *
8080472 ATGAGATGCATAATGATGCATTATATGCATGAAAGGATGCCATAT
1 ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
8080517 ATGTA-ATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
1 ATG-AGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
* * * *
8080562 ATGAGATGCATAACGTTTCATTATAGGCATGAATGGATGACATAA
1 ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
* * *
8080607 ATGAGATGCATAACGTTGCATTATCGGCATGAAATGATGCCATAA
1 ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
* * * **
8080652 ATGAAATGCATAACGGTGCATTATAAGCATGAAAGGATGTTATAA
1 ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
8080697 ATGA
1 ATGA
8080701 AAATAAAGTA
Statistics
Matches: 203, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
44 1 0.00
45 201 0.99
46 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (45 bp):
ATGAGATGCATAACGATGCATTATAGGCATGAAAGGATGCCATAA
Found at i:8084370 original size:2 final size:2
Alignment explanation
Indices: 8084363--8084403 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8084353 ATTTACTTTG
8084363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8084404 CATGTTGTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8086445 original size:17 final size:17
Alignment explanation
Indices: 8086405--8086447 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8086395 ACTAAACATC
* *
8086405 TAGTTCATTTAGCTATG
1 TAGTTCATTTAACTAAG
* *
8086422 AACTTCATTTAACTAAG
1 TAGTTCATTTAACTAAG
8086439 TAGTTCATT
1 TAGTTCATT
8086448 GATTAAACTG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (17 bp):
TAGTTCATTTAACTAAG
Found at i:8086461 original size:17 final size:17
Alignment explanation
Indices: 8086439--8086578 Score: 90
Period size: 17 Copynumber: 8.1 Consensus size: 17
8086429 TTTAACTAAG
* *
8086439 TAGTTCATTGATTAAAC
1 TAGTTCATTCATCAAAC
*
8086456 TGGTTCATTCATCAAAC
1 TAGTTCATTCATCAAAC
*
8086473 TAGTTCATTCCTCAAAC
1 TAGTTCATTCATCAAAC
*
8086490 TAATTCATTCA--AAGTTAC
1 TAGTTCATTCATCAA---AC
* * *
8086508 AAGTTCATTGAAT-AAAGT
1 TAGTTCATT-CATCAAA-C
* *
8086526 TAGGTT-ATTAATTAAAC
1 TA-GTTCATTCATCAAAC
8086543 TAGTTCATTCATCAAAC
1 TAGTTCATTCATCAAAC
* *
8086560 TAGTTCATTTATTAAAC
1 TAGTTCATTCATCAAAC
8086577 TA
1 TA
8086579 ACTCTTAATT
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
15 2 0.02
16 3 0.03
17 70 0.72
18 16 0.16
19 4 0.04
20 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (17 bp):
TAGTTCATTCATCAAAC
Found at i:8089557 original size:17 final size:17
Alignment explanation
Indices: 8089470--8089586 Score: 76
Period size: 17 Copynumber: 6.8 Consensus size: 17
8089460 AACTGAGTAC
*
8089470 TTCATTGATTAAACTAG
1 TTCATTAATTAAACTAG
* * *
8089487 TTTATTCATCAAACTAG
1 TTCATTAATTAAACTAG
* * *
8089504 TTCAGTCAATATTAA-GAG
1 TTCA-TTAAT-TAAACTAG
* *
8089522 ATCATTTAA-TAAAGTTAG
1 TTCA-TTAATTAAA-CTAG
8089540 TTCATTAATTAAACTAG
1 TTCATTAATTAAACTAG
* *
8089557 TTCATTCATCAAACTAG
1 TTCATTAATTAAACTAG
*
8089574 TTCATTTATTAAA
1 TTCATTAATTAAA
8089587 TTAACTCTTA
Statistics
Matches: 75, Mismatches: 20, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
16 3 0.04
17 50 0.67
18 20 0.27
19 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (17 bp):
TTCATTAATTAAACTAG
Found at i:8090297 original size:12 final size:13
Alignment explanation
Indices: 8090280--8090318 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
8090270 ACGTACATAT
8090280 TTATAT-ATATTA
1 TTATATAATATTA
*
8090292 TTATATAATAATA
1 TTATATAATATTA
8090305 TTAT-TAATATTA
1 TTATATAATATTA
8090317 TT
1 TT
8090319 TTTACTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATATAATATTA
Found at i:8102010 original size:2 final size:2
Alignment explanation
Indices: 8102003--8102063 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
8101993 AGTGACGTAC
8102003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8102045 AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT
8102064 TATTAATATT
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8104959 original size:22 final size:22
Alignment explanation
Indices: 8104934--8104983 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
8104924 AAACATTCAA
*
8104934 AAGTAAGGTTACCATTTATCAT
1 AAGTAAGGTTACCATTGATCAT
8104956 AAGTAAGGTTACCATTGATCAT
1 AAGTAAGGTTACCATTGATCAT
8104978 AAGTAA
1 AAGTAA
8104984 ATTAAAGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (22 bp):
AAGTAAGGTTACCATTGATCAT
Found at i:8105967 original size:24 final size:24
Alignment explanation
Indices: 8105936--8105991 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
8105926 GTGGATCACA
*
8105936 AAAAGTCACGA-CTATTGGTTCTTC
1 AAAAGTCAC-ATCTATTAGTTCTTC
*
8105960 AAAAGTCACATCTTTTAGTTCTTC
1 AAAAGTCACATCTATTAGTTCTTC
8105984 AAAAGTCA
1 AAAAGTCA
8105992 TAATTCTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (24 bp):
AAAAGTCACATCTATTAGTTCTTC
Found at i:8111437 original size:118 final size:118
Alignment explanation
Indices: 8111229--8111468 Score: 401
Period size: 118 Copynumber: 2.0 Consensus size: 118
8111219 GAATGGTCAA
*
8111229 TTGGAAATGTTAAGGTTAGCATTTATGTTGTAACATGAAAATTGTATCGAATAAGCATCAGAAAA
1 TTGGAAATGTTAAGGTCAGCATTTATGTTGTAACATGAAAATTGTATCGAATAAGCATCAGAAAA
*
8111294 TTTGTTAGGAATTTTTTTTCCAAAGTATGCCCATGTTAGTAAGATTCTAGCAT
66 TTTGTTAGGAATTTATTTTCCAAAGTATGCCCATGTTAGTAAGATTCTAGCAT
* *
8111347 TTGGAAGTGTTAAGGTCAGCATTTATGTTGTAACATGGAAATTGTATCGAATAAGCATC-GTAAA
1 TTGGAAATGTTAAGGTCAGCATTTATGTTGTAACATGAAAATTGTATCGAATAAGCATCAG-AAA
* * *
8111411 TTTTGTTAGGAATTTATTTTCCAAAGTATTCCTATGTTAGTAAGATTCTAGCAT
65 ATTTGTTAGGAATTTATTTTCCAAAGTATGCCCATGTTAGTAAGATTCTAGCAT
8111465 TTGG
1 TTGG
8111469 TTTGAATTTG
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
117 1 0.01
118 113 0.99
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (118 bp):
TTGGAAATGTTAAGGTCAGCATTTATGTTGTAACATGAAAATTGTATCGAATAAGCATCAGAAAA
TTTGTTAGGAATTTATTTTCCAAAGTATGCCCATGTTAGTAAGATTCTAGCAT
Found at i:8112680 original size:56 final size:56
Alignment explanation
Indices: 8112587--8112818 Score: 277
Period size: 56 Copynumber: 4.1 Consensus size: 56
8112577 TAGCAAGCTG
* *
8112587 CATATTCGGGATTGCACTAAAGTATTGGTACATATGGTGGGCACGACCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTATTAGTGCATATGGTGGGCACGACCTTATGTGT
* * * *
8112643 CATATTCGGTATTGCACTAAAGTATTAGTGCAGATGGTGGGCATGACCTTATGTGC
1 CATATTCGGGATTGCACTAAAGTATTAGTGCATATGGTGGGCACGACCTTATGTGT
* * **
8112699 CATACTT-GGGATTACACTAAAAGTATAAGTGCATATGGTGGGCATAACCTTATGTGT
1 CATA-TTCGGGATTGCACT-AAAGTATTAGTGCATATGGTGGGCACGACCTTATGTGT
* * * * *
8112756 CATATTCAGGACTGCACAAAAGTATAACTAGTGAAAATGGTGGGCACGACCTTATGTGT
1 CATATTCGGGATTGCACTAAAGTAT---TAGTGCATATGGTGGGCACGACCTTATGTGT
8112815 CATA
1 CATA
8112819 CTGGGGTTAG
Statistics
Matches: 149, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
56 72 0.48
57 47 0.32
59 30 0.20
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (56 bp):
CATATTCGGGATTGCACTAAAGTATTAGTGCATATGGTGGGCACGACCTTATGTGT
Found at i:8140355 original size:22 final size:23
Alignment explanation
Indices: 8140313--8140362 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
8140303 GATGCACTGT
* * *
8140313 TCACTGTTCATGGGTATTGTTCA
1 TCACTGTTCATCGGTACTGTTAA
8140336 TCACTGTTCA-CGGTACTGTTAA
1 TCACTGTTCATCGGTACTGTTAA
8140358 TCACT
1 TCACT
8140363 AATAATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (23 bp):
TCACTGTTCATCGGTACTGTTAA
Found at i:8156871 original size:35 final size:35
Alignment explanation
Indices: 8156825--8156982 Score: 153
Period size: 35 Copynumber: 4.6 Consensus size: 35
8156815 AGTTTATAAA
**
8156825 AACTCAAAAGATACGTATACGTTGCATTACGTAAC
1 AACTCAAAAGATACGTATAAATTGCATTACGTAAC
* * ***
8156860 AACTCAAAAGATAAGTATAAATTGCATCAAACAAC
1 AACTCAAAAGATACGTATAAATTGCATTACGTAAC
* * * **
8156895 AACCCAAAAGAAACGTATATATTGTGTTACGTAAC
1 AACTCAAAAGATACGTATAAATTGCATTACGTAAC
*
8156930 AACTCAAAA-ATACGTATAAATTGCGTTA---AAC
1 AACTCAAAAGATACGTATAAATTGCATTACGTAAC
* *
8156961 AACTCAAAAAATACGTGTAAAT
1 AACTCAAAAGATACGTATAAAT
8156983 ATTAAATAGC
Statistics
Matches: 100, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
31 12 0.12
32 11 0.11
34 16 0.16
35 61 0.61
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.24
Consensus pattern (35 bp):
AACTCAAAAGATACGTATAAATTGCATTACGTAAC
Found at i:8157048 original size:35 final size:35
Alignment explanation
Indices: 8157005--8157091 Score: 113
Period size: 35 Copynumber: 2.5 Consensus size: 35
8156995 TAAAATAACT
*
8157005 CAAA-AAATTGCATTAAATAACAACTTAAAAGGAA
1 CAAATAAATTGCATTAAATAACAACTTAAAAGAAA
* *
8157039 CAAATAAATTGAATTGAATAACAACTTAAAAGAAA
1 CAAATAAATTGCATTAAATAACAACTTAAAAGAAA
** *
8157074 CGTATAAATTCCATTAAA
1 CAAATAAATTGCATTAAA
8157092 ACTATAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 4 0.09
35 40 0.91
ACGTcount: A:0.56, C:0.11, G:0.08, T:0.24
Consensus pattern (35 bp):
CAAATAAATTGCATTAAATAACAACTTAAAAGAAA
Found at i:8165626 original size:20 final size:21
Alignment explanation
Indices: 8165601--8165639 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8165591 CTTTCTCGTG
8165601 TTTCAA-TCCCTAAATCCCCT
1 TTTCAATTCCCTAAATCCCCT
*
8165621 TTTCAATTCCCTCAATCCC
1 TTTCAATTCCCTAAATCCC
8165640 TAACCCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36
Consensus pattern (21 bp):
TTTCAATTCCCTAAATCCCCT
Found at i:8169210 original size:20 final size:21
Alignment explanation
Indices: 8169185--8169223 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8169175 CTTTCTCGTG
8169185 TTTCAA-TCCCTAAATCCCCT
1 TTTCAATTCCCTAAATCCCCT
*
8169205 TTTCAATTCCCTCAATCCC
1 TTTCAATTCCCTAAATCCC
8169224 TAACCCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36
Consensus pattern (21 bp):
TTTCAATTCCCTAAATCCCCT
Found at i:8171668 original size:132 final size:132
Alignment explanation
Indices: 8171431--8171682 Score: 405
Period size: 132 Copynumber: 1.9 Consensus size: 132
8171421 GAAGTGTTAC
* * *
8171431 GTATTGAGTAACACTCATATTGGCTTACTTGAGATCGGAAGCTTTACTCTCGATCCCAAACAACT
1 GTATTGAGTAACACTCAGATCGGCTTACTTGAGATCGGAAGCTTTACTCTAGATCCCAAACAACT
* *
8171496 CAGAAATATTATCTGCGCTTGAATACGTTTCTTTGACAGCACACCAGATTTCATGTGATGTTTCA
66 CAGAAATATTATATGCGCTTGAATACGTTTCTTTAACAGCACACCAGATTTCATGTGATGTTTCA
8171561 TA
131 TA
* ** *
8171563 GTATTGAGTAACACTCAGATCGTCTTACTTGAGATCGGAAGCTTTACTCTAGATCTGAAACAAGT
1 GTATTGAGTAACACTCAGATCGGCTTACTTGAGATCGGAAGCTTTACTCTAGATCCCAAACAACT
* *
8171628 TAGAAATATTATATGCGCTTGAATGCGTTTCTTTAACAGCACACCAGATTTCATG
66 CAGAAATATTATATGCGCTTGAATACGTTTCTTTAACAGCACACCAGATTTCATG
8171683 GAGTTAGAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 109 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (132 bp):
GTATTGAGTAACACTCAGATCGGCTTACTTGAGATCGGAAGCTTTACTCTAGATCCCAAACAACT
CAGAAATATTATATGCGCTTGAATACGTTTCTTTAACAGCACACCAGATTTCATGTGATGTTTCA
TA
Found at i:8172241 original size:2 final size:2
Alignment explanation
Indices: 8172234--8172283 Score: 59
Period size: 2 Copynumber: 26.0 Consensus size: 2
8172224 AATTTTAAGA
* *
8172234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AA AT A- AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8172274 AT TT AT AT AT
1 AT AT AT AT AT
8172284 TTAGAAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
1 2 0.05
2 39 0.95
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8172379 original size:2 final size:2
Alignment explanation
Indices: 8172372--8172401 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8172362 ATTTGAACAA
8172372 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8172402 GACTAATATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8173839 original size:9 final size:9
Alignment explanation
Indices: 8173827--8173871 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
8173817 AAAAAATATA
*
8173827 ATAATTATT
1 ATAATAATT
8173836 ATAATAATATT
1 ATAAT-A-ATT
*
8173847 ATAACAATT
1 ATAATAATT
8173856 ATAATAATT
1 ATAATAATT
8173865 ATAATAA
1 ATAATAA
8173872 AAATAAAACG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
9 23 0.74
10 1 0.03
11 7 0.23
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
ATAATAATT
Found at i:8173863 original size:32 final size:27
Alignment explanation
Indices: 8173796--8173879 Score: 87
Period size: 32 Copynumber: 2.9 Consensus size: 27
8173786 ATATGTAATA
*
8173796 ATAATATTTATTATTAATAATAAAAAAT
1 ATAATAATTATTA-TAATAATAAAAAAT
8173824 ATAATAATTATTATAATAATATTATAACAATT
1 ATAATAATTATTATAATAATA--A-AA-AA-T
* *
8173856 ATAATAATTATAATAAAAATAAAA
1 ATAATAATTATTATAATAATAAAA
8173880 CGGGCAAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
27 8 0.17
28 12 0.25
29 3 0.06
30 3 0.06
31 2 0.04
32 20 0.42
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (27 bp):
ATAATAATTATTATAATAATAAAAAAT
Found at i:8174258 original size:138 final size:139
Alignment explanation
Indices: 8174094--8174452 Score: 431
Period size: 139 Copynumber: 2.6 Consensus size: 139
8174084 ATCAAAAAAT
* * *
8174094 TTGAACAAGTTTTTCTTATTATGAACTTCTTCTTCATCTTCAGATGAG-TCATTCTCAATATGAA
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTC-TTCTCATTATGAA
* * * * *
8174158 CTCCT-TCTGGAAATGTTGATCCTCAAAAGAGG-GGTT-GTTAATTCAGCTTCATATGTGATGAA
65 CT-TTATCTGGAAATGTTGATCCTCAAAAGAGGTGCTTCGTTAATTCAACTCCATAGGTGATGAA
*
8174220 TTTAAGAC-AAGG
129 -TAAAG-CTAAGG
* * *
8174232 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTATTCAGATGAGTTCTTCTCATTACGAAC
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
* ** * * * *
8174297 TTTCTCTAAAAATGTTGATCCTCAAGAGAGGTTCTTCTTTCATTCAACTCCATAGGTGATGAATA
66 TTTATCTGGAAATGTTGATCCTCAAAAGAGGTGCTTCGTTAATTCAACTCCATAGGTGATGAATA
*
8174362 AAGCTATGG
131 AAGCTAAGG
** * *
8174371 TCAAACAAGTTCTTATTATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
8174436 TTTATCTGGAAATGTTG
66 TTTATCTGGAAATGTTG
8174453 GTGTTGATCT
Statistics
Matches: 187, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
137 1 0.01
138 82 0.44
139 83 0.44
140 21 0.11
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (139 bp):
TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
TTTATCTGGAAATGTTGATCCTCAAAAGAGGTGCTTCGTTAATTCAACTCCATAGGTGATGAATA
AAGCTAAGG
Found at i:8174701 original size:113 final size:113
Alignment explanation
Indices: 8174482--8174803 Score: 483
Period size: 113 Copynumber: 2.9 Consensus size: 113
8174472 TGTGATAGAG
* *
8174482 TCAAGCAAAAGGTTGAACAATTTCTTCTCATTATGAACTTT-TTCTT-CATCTTCAGATGAGTTC
1 TCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTC
* * * *
8174545 TTCTCATTATGAACT-T-CCTCTAGAAAAGTTGATCCATCGAGTGATGAAT
65 TTCTCATTATGAACTCTACC-C-GGCAATGTTGATCCATCAAGTGATGAAT
*
8174594 TCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
8174659 TCTCATTATGAACTCTACCCGGCAATGTTGATCCATCAAGTGATGAAT
66 TCTCATTATGAACTCTACCCGGCAATGTTGATCCATCAAGTGATGAAT
* *
8174707 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
* *
8174772 TCTCATTATGAACTCTACCTGAC-ATGTTGATC
66 TCTCATTATGAACTCTACCCGGCAATGTTGATC
8174804 TATTGAGTGA
Statistics
Matches: 194, Mismatches: 12, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
111 3 0.02
112 49 0.25
113 138 0.71
114 2 0.01
115 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
TCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTCTACCCGGCAATGTTGATCCATCAAGTGATGAAT
Found at i:8175198 original size:22 final size:23
Alignment explanation
Indices: 8175173--8175229 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
8175163 AAATCTTTCT
8175173 TCTTTGAAAATG-GAATATATCA
1 TCTTTGAAAATGAGAATATATCA
*
8175195 TCTTT-AAAGA-GAGAATCTATCA
1 TCTTTGAAA-ATGAGAATATATCA
8175217 TCTTTGAAGAATG
1 TCTTTGAA-AATG
8175230 TAGATGTAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
21 4 0.14
22 20 0.69
23 3 0.10
24 2 0.07
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (23 bp):
TCTTTGAAAATGAGAATATATCA
Found at i:8176660 original size:75 final size:74
Alignment explanation
Indices: 8176490--8176736 Score: 300
Period size: 75 Copynumber: 3.3 Consensus size: 74
8176480 GATATGGGTC
* * * * * * * *
8176490 TTCAACATGCCCTAACATTTGCTAATACAGACGTTCAAAATGCACCAACATTCCTAATTCTGATT
1 TTCAGCATGCCCCAGCATTTGCTGATACAAATGTTCAAAATGCATCAATATT-CTAATTCTGATT
8176555 -AAAAGGGCT
65 GAAAAGGGCT
*
8176564 TTCAGCATGCCCCAGCATTTGCTGATACAAATGTTCAAAATG-AGTCAATATTCTTGATTCTGAT
1 TTCAGCATGCCCCAGCATTTGCTGATACAAATGTTCAAAATGCA-TCAATATTC-TAATTCTGAT
8176628 TGAAAAGGGCT
64 TGAAAAGGGCT
* * * *
8176639 TTCAGCCTGCCCCAGTATTTGCTGATACAAATGTTCAAAATGCATTAATATTCCAACTTCTGATT
1 TTCAGCATGCCCCAGCATTTGCTGATACAAATGTTCAAAATGCATCAATATTCTAA-TTCTGATT
* *
8176704 GAAATGAGCT
65 GAAAAGGGCT
*
8176714 TTCAGCATGCCTCAGCATTTGCT
1 TTCAGCATGCCCCAGCATTTGCT
8176737 TCTTGTTGAT
Statistics
Matches: 149, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
73 2 0.01
74 53 0.36
75 93 0.62
76 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (74 bp):
TTCAGCATGCCCCAGCATTTGCTGATACAAATGTTCAAAATGCATCAATATTCTAATTCTGATTG
AAAAGGGCT
Found at i:8180050 original size:9 final size:9
Alignment explanation
Indices: 8180036--8180073 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
8180026 CTTGATTCAA
8180036 TTTTTCCTT
1 TTTTTCCTT
8180045 TTTTT-CTT
1 TTTTTCCTT
* *
8180053 TCTTTCTTT
1 TTTTTCCTT
8180062 TTTTTCCTT
1 TTTTTCCTT
8180071 TTT
1 TTT
8180074 CCTTATCCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTCCTT
Found at i:8180082 original size:13 final size:12
Alignment explanation
Indices: 8180036--8180099 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
8180026 CTTGATTCAA
*
8180036 TTTTTCCTTT-T
1 TTTTTCCTTTCC
*
8180047 TTTCTTTCTTT-C
1 TTT-TTCCTTTCC
8180059 TTTTT--TTTCC
1 TTTTTCCTTTCC
8180069 TTTTTCCTTATCC
1 TTTTTCCTT-TCC
8180082 TTTTTTCCTTTCC
1 -TTTTTCCTTTCC
8180095 TTTTT
1 TTTTT
8180100 TTTGATGATG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
9 3 0.07
10 6 0.13
11 5 0.11
12 16 0.36
13 6 0.13
14 9 0.20
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTCCTTTCC
Found at i:8180100 original size:13 final size:13
Alignment explanation
Indices: 8180038--8180100 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
8180028 TGATTCAATT
*
8180038 TTTCCTTTTTTTC
1 TTTCCTTTTTTCC
**
8180051 TTT-CTTTCTTTTT
1 TTTCCTTT-TTTCC
8180064 TTTCC-TTTTTCC
1 TTTCCTTTTTTCC
8180076 TTATCCTTTTTTCC
1 TT-TCCTTTTTTCC
8180090 TTTCCTTTTTT
1 TTTCCTTTTTT
8180101 TTGATGATGA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
12 9 0.21
13 24 0.56
14 10 0.23
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTCCTTTTTTCC
Found at i:8180459 original size:2 final size:2
Alignment explanation
Indices: 8180398--8180450 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8180388 ACAACAAGGG
8180398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8180440 AT AT AT AT AT A
1 AT AT AT AT AT A
8180451 CACATATATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8183516 original size:43 final size:44
Alignment explanation
Indices: 8183444--8183530 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
8183434 TCGTGCATCA
*
8183444 AACAAAACTTTTACATATAAGGGACAACTTTCAGTCCTAACTTC
1 AACAAAACTTTTACATATAAGGGACAACTTTCACTCCTAACTTC
* * * *
8183488 AACAAAGC-TTTACATATAGGGGATAACTTTCCCTCCTAACTTC
1 AACAAAACTTTTACATATAAGGGACAACTTTCACTCCTAACTTC
8183531 TCTAAAGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 31 0.82
44 7 0.18
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (44 bp):
AACAAAACTTTTACATATAAGGGACAACTTTCACTCCTAACTTC
Found at i:8184825 original size:28 final size:26
Alignment explanation
Indices: 8184777--8184842 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
8184767 TAAAATAAAG
8184777 ATATTAAT-AAAAAATAATATATATAA
1 ATATT-ATGAAAAAATAATATATATAA
8184803 ATATTATGAAAATAATAAGTATATATAA
1 ATATTATGAAAA-AATAA-TATATATAA
* *
8184831 AAATTTTGAAAA
1 ATATTATGAAAA
8184843 GAAAGGATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 2 0.06
26 9 0.26
27 5 0.14
28 19 0.54
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.35
Consensus pattern (26 bp):
ATATTATGAAAAAATAATATATATAA
Found at i:8185463 original size:18 final size:18
Alignment explanation
Indices: 8185430--8185470 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8185420 GCCCATTTCT
*
8185430 AATATTAAAAAATAAATA
1 AATATTAAAAAATAAACA
**
8185448 AATATTAAAATTTAAACA
1 AATATTAAAAAATAAACA
8185466 AATAT
1 AATAT
8185471 ATATATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AATATTAAAAAATAAACA
Found at i:8186935 original size:3 final size:3
Alignment explanation
Indices: 8186927--8187004 Score: 56
Period size: 3 Copynumber: 27.0 Consensus size: 3
8186917 TTGTAATATG
* *
8186927 TAA TAA TAA TATT TAT TAA TAA TAA TAA -AA -AA T-A TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
8186970 TTA TAA TAA T-A TTA TAA CAA TTA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8187005 AATGGGTCAA
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 8 0.13
3 50 0.83
4 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:8186979 original size:12 final size:12
Alignment explanation
Indices: 8186927--8186986 Score: 56
Period size: 11 Copynumber: 5.2 Consensus size: 12
8186917 TTGTAATATG
*
8186927 TAATAATAATATT
1 TAATAATAAT-TA
* *
8186940 TATTAATAATAA
1 TAATAATAATTA
8186952 TAA-AA-AA-TA
1 TAATAATAATTA
8186961 TAATAATAATTA
1 TAATAATAATTA
8186973 TAATAAT-ATTA
1 TAATAATAATTA
8186984 TAA
1 TAA
8186987 CAATTATAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 4 0.10
10 4 0.10
11 11 0.28
12 11 0.28
13 9 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TAATAATAATTA
Found at i:8192609 original size:90 final size:89
Alignment explanation
Indices: 8192494--8192666 Score: 301
Period size: 90 Copynumber: 1.9 Consensus size: 89
8192484 TAATCCCGAA
* *
8192494 TATTTAATTTCAATTAATTAAATATATATTTAATTAATTTGAAATAATAAAATCCCTAACATGAT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAACATGAT
8192559 TAGGGTAACTTGGATATAAGAGGAT
65 TAGGGTAACTTGGATATAAGAGGAT
*
8192584 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAACATGATT
*
8192649 AGGGTAACTTGGCTATAA
66 AGGGTAACTTGGATATAA
8192667 AAGAGTGTGT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 29 0.37
90 50 0.63
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (89 bp):
TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAACATGATT
AGGGTAACTTGGATATAAGAGGAT
Found at i:8196507 original size:25 final size:26
Alignment explanation
Indices: 8196479--8196537 Score: 111
Period size: 25 Copynumber: 2.3 Consensus size: 26
8196469 AAATTTATTT
8196479 TAGGGTTTTTATGAATTAAAGGGTC-
1 TAGGGTTTTTATGAATTAAAGGGTCA
8196504 TAGGGTTTTTATGAATTAAAGGGTCA
1 TAGGGTTTTTATGAATTAAAGGGTCA
8196530 TAGGGTTT
1 TAGGGTTT
8196538 AGGCCATTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.76
26 8 0.24
ACGTcount: A:0.27, C:0.03, G:0.29, T:0.41
Consensus pattern (26 bp):
TAGGGTTTTTATGAATTAAAGGGTCA
Found at i:8196754 original size:26 final size:26
Alignment explanation
Indices: 8196725--8196787 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
8196715 TGAATGATAT
*
8196725 TTAGGGTTTTCAAACTATTTTAAAAG
1 TTAGGGTTTTCAAACTATTTTAAAAA
8196751 TTAGGGTTTTCAAACTATTTTAAAAA
1 TTAGGGTTTTCAAACTATTTTAAAAA
*
8196777 TTAGGATTTTC
1 TTAGGGTTTTC
8196788 CTATTTAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.44
Consensus pattern (26 bp):
TTAGGGTTTTCAAACTATTTTAAAAA
Found at i:8212481 original size:17 final size:17
Alignment explanation
Indices: 8212459--8212498 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
8212449 CCTCCATTGA
8212459 CGAGCTCCAAGGAGTGG
1 CGAGCTCCAAGGAGTGG
8212476 CGAGCTCCAAGGAGTGG
1 CGAGCTCCAAGGAGTGG
8212493 CGAGCT
1 CGAGCT
8212499 AGGCATCTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.40, T:0.12
Consensus pattern (17 bp):
CGAGCTCCAAGGAGTGG
Found at i:8212524 original size:26 final size:26
Alignment explanation
Indices: 8212492--8212551 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
8212482 CCAAGGAGTG
8212492 GCGAGCTAGGCATCTGAGAGGAGCTA
1 GCGAGCTAGGCATCTGAGAGGAGCTA
*
8212518 GTGAGCTAGGCATCTGAGAGGAGCTA
1 GCGAGCTAGGCATCTGAGAGGAGCTA
8212544 GCGAGCTA
1 GCGAGCTA
8212552 AGGCGAGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.27, C:0.18, G:0.38, T:0.17
Consensus pattern (26 bp):
GCGAGCTAGGCATCTGAGAGGAGCTA
Done.