genome.fa.s9606.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009606.1 Hibiscus syriacus cultivar Beakdansim tig00116990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66290

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2806--2958	59	2.6	60	87	1	191	44	4	20	30	1.72
2864--2957	29	3.2	29	71	11	91	46	4	18	30	1.68
2823--2983	60	2.7	59	85	2	196	45	5	17	31	1.71
2881--2968	31	2.9	31	71	3	81	46	6	14	31	1.71
14043--14093	17	3.1	17	70	13	52	11	25	3	58	1.50
14893--14941	20	2.5	20	83	6	66	30	20	20	28	1.98
30941--31067	45	2.8	46	84	2	157	20	21	13	44	1.85
31065--32034	81	12.0	81	88	0	1422	31	20	12	35	1.90
32434--32618	94	2.0	95	85	7	252	24	21	15	38	1.91
32624--32667	17	2.6	17	96	0	79	31	22	15	29	1.95
33406--33449	9	4.9	9	97	0	79	40	11	0	47	1.39
37442--37570	46	2.8	45	77	4	143	22	18	13	45	1.84
37568--38261	81	8.6	81	87	2	921	31	19	12	36	1.89
38221--38302	27	3.2	27	64	22	68	26	23	12	37	1.90
38208--38310	49	2.1	49	96	0	188	29	21	12	36	1.90
38131--38391	130	2.0	130	95	0	468	31	21	12	35	1.90
38257--38490	81	2.9	81	92	0	405	31	21	12	34	1.91
38046--38472	211	2.0	211	91	1	696	31	20	12	35	1.90
37965--38490	292	1.8	292	91	0	865	32	20	12	34	1.89
38906--39085	94	1.9	95	88	5	276	23	23	14	38	1.92
40933--41032	48	2.1	48	90	0	155	48	18	9	25	1.77
41654--41704	20	2.5	20	96	0	93	21	23	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41695--41734	21	2.0	21	85	9	57	25	20	12	42	1.86
44957--44993	2	18.0	2	94	5	65	48	0	2	48	1.15
46296--46320	2	12.5	2	100	0	50	48	0	0	52	1.00
47700--47740	2	19.5	2	90	9	64	46	4	0	48	1.23
47721--48122	37	10.9	37	82	10	380	44	3	6	46	1.44
47918--47942	11	2.3	11	100	0	50	40	8	8	44	1.63
47750--48098	75	4.7	73	84	8	399	45	3	6	45	1.44
48116--48169	22	2.5	20	75	18	56	22	5	0	72	1.05
49412--49460	18	2.6	20	72	21	52	32	2	0	65	1.04
53350--53612	95	2.7	95	90	4	395	31	16	18	32	1.94
54504--55665	84	13.9	84	82	1	1355	32	24	18	24	1.97
54504--55658	167	6.9	167	89	0	1625	32	24	18	24	1.97
56297--56546	75	3.5	71	77	15	248	45	4	5	44	1.47
56372--56432	27	2.3	26	88	5	88	42	3	6	47	1.45
56268--56544	37	7.7	37	77	15	251	44	4	6	45	1.49
56353--56475	64	1.9	65	90	5	196	42	4	6	47	1.48
56266--56544	139	2.0	138	84	8	361	44	4	6	44	1.50
56410--56584	75	2.3	74	80	9	192	45	2	5	46	1.40
56585--56616	3	11.3	3	87	12	50	28	0	0	71	0.86
61022--61161	72	1.9	72	98	0	271	27	13	35	24	1.93

Tables:   1

The End!