genome.fa.s961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000961.1 Hibiscus syriacus cultivar Beakdansim tig00001921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72368

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279--314	15	2.4	15	90	9	56	25	0	0	75	0.81
822--878	29	1.9	30	82	3	71	71	1	17	8	1.19
1672--1710	18	2.1	18	85	4	51	28	10	15	46	1.78
6412--6444	2	16.5	2	100	0	66	48	0	0	51	1.00
16352--16478	51	2.5	51	87	2	184	18	31	29	20	1.97
16640--16676	12	3.2	12	77	14	51	8	45	8	37	1.63
20039--20139	35	2.9	36	78	15	97	55	8	7	27	1.59
20552--20598	20	2.3	20	96	0	85	38	19	17	25	1.92
21015--21222	75	2.8	75	83	3	258	22	24	30	23	1.99
21812--21856	17	2.6	17	85	3	63	57	28	0	13	1.36
23863--23900	20	1.9	20	88	0	58	13	26	39	21	1.89
29671--29879	75	2.8	76	82	5	264	21	23	31	23	1.99
30152--30185	12	2.8	12	90	0	50	23	32	8	35	1.86
30552--30605	18	3.0	18	91	0	81	27	16	24	31	1.96
32048--32380	111	3.0	111	94	0	594	44	10	8	36	1.69
32669--32786	50	2.4	50	78	5	139	22	25	33	18	1.96
33135--33181	18	2.6	18	96	0	85	25	19	36	19	1.95
38226--38281	23	2.4	23	79	5	60	46	12	25	16	1.81
39026--39112	43	2.0	43	84	0	111	26	11	29	32	1.91
39529--39593	18	3.6	18	97	0	121	36	27	23	12	1.90
41069--41107	19	2.2	19	90	9	64	64	0	2	33	1.08
41235--41278	20	2.2	20	91	0	70	79	0	6	13	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41235--41278	11	4.2	11	85	11	56	79	0	6	13	0.92
41246--41270	9	2.8	9	100	0	50	84	0	8	8	0.79
49150--49207	21	2.8	21	92	2	91	24	20	12	43	1.86
51750--51904	38	4.1	38	78	6	127	26	22	13	37	1.91
52598--52819	113	2.0	112	84	4	295	36	15	21	26	1.93
53029--53150	3	40.7	3	100	0	244	33	0	0	66	0.92
54453--54488	2	18.0	2	100	0	72	50	0	0	50	1.00
56936--56974	2	19.5	2	100	0	78	51	0	0	48	1.00
57845--57912	33	2.1	33	97	0	127	26	17	17	38	1.92
59908--59982	21	3.6	21	94	0	132	28	16	26	29	1.96
59971--60238	20	13.6	20	69	15	123	18	20	23	38	1.94
59994--60065	22	3.4	22	66	11	69	19	16	25	38	1.92
59975--60084	41	2.7	41	90	4	168	18	18	23	40	1.91
60017--60110	19	4.7	19	74	12	82	17	20	20	42	1.89
60141--60218	41	1.9	41	94	0	138	23	20	21	34	1.97
60230--60301	22	3.4	21	71	11	67	19	15	23	41	1.89
60212--60319	41	2.6	41	83	4	137	19	17	21	41	1.90
59929--60241	61	5.3	59	71	15	162	20	19	23	36	1.95
60230--60288	19	2.8	22	70	12	61	20	16	23	38	1.92
60428--60464	6	6.2	6	93	0	65	29	37	32	0	1.58
60422--60461	18	2.2	17	83	12	53	30	40	30	0	1.57
60425--60467	12	3.5	12	90	3	68	27	39	32	0	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60462--60488	5	5.4	5	100	0	54	22	55	22	0	1.44
60813--60891	40	2.0	39	87	4	115	34	18	20	26	1.96
60982--61061	6	13.7	6	96	2	110	0	17	56	26	1.41
61159--61212	22	2.5	22	87	0	90	37	27	16	18	1.93
61263--61372	21	5.3	21	71	4	98	36	25	18	20	1.94
61200--61381	82	2.2	81	85	6	242	38	21	18	20	1.93
61252--61356	20	5.2	20	70	4	93	39	22	20	17	1.93
61200--61381	41	4.5	41	84	6	219	38	21	18	20	1.93
62361--62432	17	4.2	17	77	7	65	40	11	12	36	1.79
62877--62921	16	2.8	16	86	6	56	44	17	6	31	1.75
64071--64262	72	2.6	75	85	5	264	26	3	18	52	1.62
68199--68241	16	2.8	15	82	3	50	76	4	0	18	0.95

Tables:   1

The End!