Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6671611
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 27
Found at i:4754928 original size:26 final size:24
Alignment explanation
Indices: 4754862--4754929 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
4754852 TATCGTATTC
* *
4754862 GTGTTTATTTATTTATTTTTAAAA
1 GTGTTTGTTTATCTATTTTTAAAA
*
4754886 GTGTTTGTTTATTTATTTTTAAAA
1 GTGTTTGTTTATCTATTTTTAAAA
*
4754910 GTGTTCGTGTTTGTCTATTT
1 GTGTT--TGTTTATCTATTT
4754930 ATTGTTCACA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
24 28 0.72
26 11 0.28
ACGTcount: A:0.21, C:0.03, G:0.15, T:0.62
Consensus pattern (24 bp):
GTGTTTGTTTATCTATTTTTAAAA
Found at i:4754969 original size:23 final size:23
Alignment explanation
Indices: 4754943--4755013 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 23
4754933 GTTCACAAAT
*
4754943 ATGTTCGCTTAATGTTCATGAAC
1 ATGTTCGTTTAATGTTCATGAAC
** ** *
4754966 ATGTTTATTTAGCGTTCATGAAT
1 ATGTTCGTTTAATGTTCATGAAC
* *
4754989 GTGTTCGTTTAATGTTCATAAAC
1 ATGTTCGTTTAATGTTCATGAAC
4755012 AT
1 AT
4755014 AAATAAACAG
Statistics
Matches: 34, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.44
Consensus pattern (23 bp):
ATGTTCGTTTAATGTTCATGAAC
Found at i:4756298 original size:13 final size:13
Alignment explanation
Indices: 4756282--4756324 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
4756272 TTATTTTACC
4756282 AATTGATTTGATT
1 AATTGATTTGATT
* **
4756295 AATTGATTTAAAA
1 AATTGATTTGATT
*
4756308 AATTAATTTGATT
1 AATTGATTTGATT
4756321 AATT
1 AATT
4756325 AATTATATAG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (13 bp):
AATTGATTTGATT
Found at i:4756528 original size:9 final size:9
Alignment explanation
Indices: 4756514--4756543 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
4756504 TAGTGAATAT
4756514 TTTTGAAAA
1 TTTTGAAAA
*
4756523 TTTTGAATA
1 TTTTGAAAA
4756532 TTTTGAAAA
1 TTTTGAAAA
4756541 TTT
1 TTT
4756544 AATAGTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (9 bp):
TTTTGAAAA
Found at i:4756537 original size:18 final size:19
Alignment explanation
Indices: 4756507--4756543 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
4756497 TAAAAATTAG
4756507 TGAATATTTTTGAAAATTT
1 TGAATATTTTTGAAAATTT
4756526 TGAATA-TTTTGAAAATTT
1 TGAATATTTTTGAAAATTT
4756544 AATAGTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (19 bp):
TGAATATTTTTGAAAATTT
Found at i:4759057 original size:17 final size:17
Alignment explanation
Indices: 4759023--4759057 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4759013 ACTTAGGTTT
4759023 ATATTTTTTTAAATAAA
1 ATATTTTTTTAAATAAA
4759040 ATATTATTTTTAAA-AAA
1 ATATT-TTTTTAAATAAA
4759057 A
1 A
4759058 CTTAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATTTTTTTAAATAAA
Found at i:4766046 original size:72 final size:74
Alignment explanation
Indices: 4765946--4766096 Score: 261
Period size: 72 Copynumber: 2.1 Consensus size: 74
4765936 AGGGTGCTAC
* *
4765946 ACCGATTTTATATGAAGTATTGGTTTTATTTATGATTTTTTATGTCTATTTATAA-TTT-AAATT
1 ACCGATTTTATATGAAGTATTGATTTTATTTATGATTTTTTACGTCTATTTATAATTTTAAAATT
4766009 TTTTTATAT
66 TTTTTATAT
*
4766018 GCCGATTTTATATGAAGTATTGATTTTATTTATGATTTTTTACGTCTATTTATAATTTTAAAATT
1 ACCGATTTTATATGAAGTATTGATTTTATTTATGATTTTTTACGTCTATTTATAATTTTAAAATT
4766083 TTTTTATAT
66 TTTTTATAT
4766092 ACCGA
1 ACCGA
4766097 ATCCTTGCTA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 52 0.71
73 3 0.04
74 18 0.25
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (74 bp):
ACCGATTTTATATGAAGTATTGATTTTATTTATGATTTTTTACGTCTATTTATAATTTTAAAATT
TTTTTATAT
Found at i:4767185 original size:29 final size:29
Alignment explanation
Indices: 4767140--4767197 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
4767130 GTGTTGGCCG
4767140 TAGGTCGCCATGCCTTCCGGGCGACCTAC
1 TAGGTCGCCATGCCTTCCGGGCGACCTAC
* * *
4767169 TAGGTCGCCATGTCTTCCTGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCGGGCGACCTAC
4767198 AAGAGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCGGGCGACCTAC
Found at i:4767259 original size:14 final size:14
Alignment explanation
Indices: 4767240--4767267 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4767230 CGCTGGGCAT
4767240 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
4767254 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
4767268 GAGCATCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.43, G:0.29, T:0.07
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:4767306 original size:14 final size:14
Alignment explanation
Indices: 4767240--4767298 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 14
4767230 CGCTGGGCAT
*
4767240 CCGAGGCCATCCGA
1 CCGAGGCCATCCAA
4767254 CCGAGGCCATCCGAGAGCA
1 CCGAGGCCATCC---A--A
4767273 TCCGAGGCCATCCAA
1 -CCGAGGCCATCCAA
4767288 CCGAGGCCATC
1 CCGAGGCCATC
4767299 TGAACGAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
14 23 0.61
15 1 0.03
17 1 0.03
19 1 0.03
20 12 0.32
ACGTcount: A:0.24, C:0.41, G:0.27, T:0.08
Consensus pattern (14 bp):
CCGAGGCCATCCAA
Found at i:4786578 original size:12 final size:13
Alignment explanation
Indices: 4786561--4786589 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4786551 GTTTAATCTC
4786561 AAAATTT-TAAAA
1 AAAATTTATAAAA
4786573 AAAATTTATAAAA
1 AAAATTTATAAAA
4786586 AAAA
1 AAAA
4786590 AATTTATAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTTATAAAA
Found at i:4786589 original size:15 final size:15
Alignment explanation
Indices: 4786569--4786597 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4786559 TCAAAATTTT
4786569 AAAAAAAATTTATAA
1 AAAAAAAATTTATAA
4786584 AAAAAAAATTTATA
1 AAAAAAAATTTATA
4786598 GATGAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAAAAAATTTATAA
Found at i:4791231 original size:54 final size:54
Alignment explanation
Indices: 4791168--4791465 Score: 470
Period size: 54 Copynumber: 5.5 Consensus size: 54
4791158 TAAACAAATT
*** * * * *
4791168 ATGAATTCCGTGCCTTGCACACCTAGTGTCGAAACGGATATTCATCCTCATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
* * * *
4791222 ATGATTTCCGTGAAAAGCACACTTAGTGCCGAAACGGTTATTCCTCCACATAAG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
*
4791276 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
*
4791330 ATGAATTCCGTGAAATGCATACTTAGTGCCGAAACGGTTATTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
*
4791384 ATGAATTCCGTGAAATGCACACTTAGTGCAGAAACGGTTATTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
4791438 ATGAATTCCGTGAAATGCACACTTAGTG
1 ATGAATTCCGTGAAATGCACACTTAGTG
4791466 TCTATTGGGT
Statistics
Matches: 224, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 224 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (54 bp):
ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
Found at i:4791841 original size:22 final size:22
Alignment explanation
Indices: 4791816--4791889 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
4791806 CCATGATATT
4791816 GATACTACCCTACTATGGTATC
1 GATACTACCCTACTATGGTATC
* * * *
4791838 GATACCTA---TGCCATGATATT
1 GATA-CTACCCTACTATGGTATC
4791858 GATACTACCCTACTATGGTATC
1 GATACTACCCTACTATGGTATC
4791880 GATAC-ACCCT
1 GATACTACCCT
4791890 TCCGGTATCG
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
19 3 0.08
20 12 0.30
21 5 0.12
22 17 0.43
23 3 0.08
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (22 bp):
GATACTACCCTACTATGGTATC
Found at i:4791850 original size:42 final size:42
Alignment explanation
Indices: 4791791--4791884 Score: 188
Period size: 42 Copynumber: 2.2 Consensus size: 42
4791781 TGGCACTTCA
4791791 GTATCGATACCTATGCCATGATATTGATACTACCCTACTATG
1 GTATCGATACCTATGCCATGATATTGATACTACCCTACTATG
4791833 GTATCGATACCTATGCCATGATATTGATACTACCCTACTATG
1 GTATCGATACCTATGCCATGATATTGATACTACCCTACTATG
4791875 GTATCGATAC
1 GTATCGATAC
4791885 ACCCTTCCGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (42 bp):
GTATCGATACCTATGCCATGATATTGATACTACCCTACTATG
Found at i:4791980 original size:96 final size:95
Alignment explanation
Indices: 4791874--4792053 Score: 290
Period size: 96 Copynumber: 1.9 Consensus size: 95
4791864 ACCCTACTAT
*
4791874 GGTATCGATACACCCTTCCGGTATCGATACCAAAATTAGCTTCGAAG-TGCCTTGGTATCGATAT
1 GGTATCGATACACCCTTCCGGTATCGATACCAAAATTAGCTTCGAAGTTACC-TGGTATCGATA-
4791938 CCCTCACCATGGTATCAATACTACTATGCTAG
64 CCCTCACCATGGTATCAATACTACTATGCTAG
* * * *
4791970 GGTATTGATACCCCCTTCCGGTATCGATACCAAAATTAGGTTCGATGTTACCTGGTATCGATACC
1 GGTATCGATACACCCTTCCGGTATCGATACCAAAATTAGCTTCGAAGTTACCTGGTATCGATACC
4792035 CTCACCATGGTATCAATAC
66 CTCACCATGGTATCAATAC
4792054 CACCTCATCA
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
95 21 0.27
96 54 0.69
97 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (95 bp):
GGTATCGATACACCCTTCCGGTATCGATACCAAAATTAGCTTCGAAGTTACCTGGTATCGATACC
CTCACCATGGTATCAATACTACTATGCTAG
Found at i:4796113 original size:22 final size:22
Alignment explanation
Indices: 4796088--4796136 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
4796078 TTTGCTATCA
4796088 ACAAATATTCAATTACAAGATC
1 ACAAATATTCAATTACAAGATC
4796110 ACAAATATTCAATTACAAGATC
1 ACAAATATTCAATTACAAGATC
*
4796132 GCAAA
1 ACAAA
4796137 ATCAGGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.51, C:0.18, G:0.06, T:0.24
Consensus pattern (22 bp):
ACAAATATTCAATTACAAGATC
Found at i:4797699 original size:3 final size:3
Alignment explanation
Indices: 4797691--4797730 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
4797681 AAATTATATG
* * *
4797691 ATA ATA ATA ATA ATA ATA ATA ACA ACA ATA ACA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4797731 AAGGCTTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (3 bp):
ATA
Found at i:4800446 original size:18 final size:18
Alignment explanation
Indices: 4800423--4800458 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
4800413 AAACAGTAAT
4800423 TAGGTATTGTTATGCATA
1 TAGGTATTGTTATGCATA
4800441 TAGGTATTGTTATGCATA
1 TAGGTATTGTTATGCATA
4800459 CATTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (18 bp):
TAGGTATTGTTATGCATA
Found at i:4801777 original size:31 final size:31
Alignment explanation
Indices: 4801739--4801805 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
4801729 TTTTAAACAC
**
4801739 TTTGATCCAAGAAGCCAAGTTCAGGTGGCAA
1 TTTGATCCAAGAAGCCAAGTTCAGGTACCAA
*
4801770 TTTGATCCAAGAAGCCAAGTTTAGGTACCAA
1 TTTGATCCAAGAAGCCAAGTTCAGGTACCAA
4801801 TTTGA
1 TTTGA
4801806 ATCTTAACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
TTTGATCCAAGAAGCCAAGTTCAGGTACCAA
Found at i:4817495 original size:21 final size:21
Alignment explanation
Indices: 4817465--4817506 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4817455 TTGAGTTGGA
* *
4817465 AAAATGAACTGCAGTCAAAGG
1 AAAATCAACTACAGTCAAAGG
*
4817486 AAAATCAACTACGGTCAAAGG
1 AAAATCAACTACAGTCAAAGG
4817507 GCTTGAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.17, G:0.21, T:0.14
Consensus pattern (21 bp):
AAAATCAACTACAGTCAAAGG
Found at i:4820056 original size:11 final size:11
Alignment explanation
Indices: 4820040--4820067 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4820030 GAGACATTAC
4820040 CCGCCCCACAT
1 CCGCCCCACAT
4820051 CCGCCCCACAT
1 CCGCCCCACAT
4820062 CCGCCC
1 CCGCCC
4820068 GCCCAGCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.68, G:0.11, T:0.07
Consensus pattern (11 bp):
CCGCCCCACAT
Found at i:4821404 original size:31 final size:34
Alignment explanation
Indices: 4821369--4821437 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
4821359 CTTACAAACC
*
4821369 CCCTAG-TTTT-C-CGGGCTAAACTAGAACCTTT
1 CCCTAGTTTTTACACGGGATAAACTAGAACCTTT
* *
4821400 CCCTAGTTTTTACACGGGATTAGCTAGAACCTTT
1 CCCTAGTTTTTACACGGGATAAACTAGAACCTTT
4821434 CCCT
1 CCCT
4821438 TTACAAAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.19
32 4 0.12
33 1 0.03
34 21 0.66
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (34 bp):
CCCTAGTTTTTACACGGGATAAACTAGAACCTTT
Found at i:4821928 original size:22 final size:21
Alignment explanation
Indices: 4821876--4821953 Score: 90
Period size: 21 Copynumber: 3.7 Consensus size: 21
4821866 CGGTGTTTGA
4821876 GTGCATGGATGCAC-TGCATG
1 GTGCATGGATGCACTTGCATG
*
4821896 GTGCATAGATGCACTAGTGCAT-
1 GTGCATGGATGCACT--TGCATG
*
4821918 GTGCATGGATGCAC-TGCAGGG
1 GTGCATGGATGCACTTGCA-TG
4821939 GTGCATGGATGCACT
1 GTGCATGGATGCACT
4821954 GCGACACCCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 4 0.08
20 13 0.27
21 14 0.29
22 13 0.27
23 5 0.10
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (21 bp):
GTGCATGGATGCACTTGCATG
Found at i:4822054 original size:29 final size:29
Alignment explanation
Indices: 4822033--4822090 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
4822023 AAACTTTGAA
4822033 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
4822062 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
4822091 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:4822080 original size:30 final size:30
Alignment explanation
Indices: 4822033--4822092 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
4822023 AAACTTTGAA
4822033 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
4822062 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
4822093 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:4824294 original size:32 final size:34
Alignment explanation
Indices: 4824258--4824326 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
4824248 CTTACAAACC
* *
4824258 CCCTAG-TTTTTC-CGGGCTAAACTAGAACCTTT
1 CCCTAGCTTTTACACGGGATAAACTAGAACCTTT
* *
4824290 CCCTAGCTTTTACACGGGATTAGCTAGAACCTTT
1 CCCTAGCTTTTACACGGGATAAACTAGAACCTTT
4824324 CCC
1 CCC
4824327 CTTTACAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 6 0.19
33 5 0.16
34 20 0.65
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (34 bp):
CCCTAGCTTTTACACGGGATAAACTAGAACCTTT
Found at i:4824723 original size:20 final size:20
Alignment explanation
Indices: 4824694--4824767 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
4824684 GCAGCCTTCG
* *
4824694 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAAGA
**
4824714 TGCATCGATGCACAGCCTTGA
1 TGCATCGATGCACAG-CAAGA
* *
4824735 TTCATCGATGCACAGAAAGA
1 TGCATCGATGCACAGCAAGA
4824755 TGCATCGATGCAC
1 TGCATCGATGCAC
4824768 TAATTGCATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 28 0.62
21 17 0.38
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (20 bp):
TGCATCGATGCACAGCAAGA
Found at i:4824730 original size:41 final size:41
Alignment explanation
Indices: 4824685--4824767 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
4824675 TTAGTAGTTG
* * *
4824685 CAGCCTTCG-TGCATGGATGCACAGCAGGATGCATCGATGCA
1 CAGCCTT-GATGCATCGATGCACAGAAAGATGCATCGATGCA
*
4824726 CAGCCTTGATTCATCGATGCACAGAAAGATGCATCGATGCA
1 CAGCCTTGATGCATCGATGCACAGAAAGATGCATCGATGCA
4824767 C
1 C
4824768 TAATTGCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (41 bp):
CAGCCTTGATGCATCGATGCACAGAAAGATGCATCGATGCA
Found at i:4824820 original size:20 final size:19
Alignment explanation
Indices: 4824795--4824849 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
4824785 TGAGTGCATG
4824795 GATGCACTGCATGGTGTATC
1 GATGCACTGCA-GGTGTATC
*
4824815 GATGCACTAGTGCAGGTGTATG
1 GATGCAC---TGCAGGTGTATC
*
4824837 GATGCACTACAGG
1 GATGCACTGCAGG
4824850 GGTGCATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 5 0.17
20 7 0.23
22 14 0.47
23 4 0.13
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (19 bp):
GATGCACTGCAGGTGTATC
Found at i:4824835 original size:22 final size:23
Alignment explanation
Indices: 4824802--4824845 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4824792 ATGGATGCAC
4824802 TGCATGGTGTATCGATGCACTAG
1 TGCATGGTGTATCGATGCACTAG
*
4824825 TGCA-GGTGTATGGATGCACTA
1 TGCATGGTGTATCGATGCACTA
4824846 CAGGGGTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.30
Consensus pattern (23 bp):
TGCATGGTGTATCGATGCACTAG
Found at i:4826113 original size:15 final size:16
Alignment explanation
Indices: 4826095--4826132 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
4826085 ATTCTATTAT
4826095 TTTATTTTTCT-GCAC
1 TTTATTTTTCTCGCAC
* *
4826110 TTTAATTTTCTCGCAT
1 TTTATTTTTCTCGCAC
4826126 TTTATTT
1 TTTATTT
4826133 CAATCCCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (16 bp):
TTTATTTTTCTCGCAC
Found at i:4826128 original size:31 final size:31
Alignment explanation
Indices: 4826065--4826132 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
4826055 TTTTTATTTA
**
4826065 TTATTTTTCTCGCACTTTAAATTCTATTATT
1 TTATTTTTCTCGCACTTTAAATTCTAGCATT
* *
4826096 TTATTTTTCT-GCACTTTAATTTTCTCGCATT
1 TTATTTTTCTCGCACTTTAA-ATTCTAGCATT
4826127 TTATTT
1 TTATTT
4826133 CAATCCCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.19, C:0.16, G:0.04, T:0.60
Consensus pattern (31 bp):
TTATTTTTCTCGCACTTTAAATTCTAGCATT
Found at i:4826129 original size:16 final size:15
Alignment explanation
Indices: 4826093--4826177 Score: 50
Period size: 15 Copynumber: 5.7 Consensus size: 15
4826083 AAATTCTATT
*
4826093 ATTTTATTTTTCTGC
1 ATTTTAATTTTCTGC
*
4826108 ACTTTAATTTTCTCGC
1 ATTTTAATTTTCT-GC
*
4826124 ATTTT-A-TTTCAATCC
1 ATTTTAATTTTC--TGC
* * *
4826139 CTTTTAATTTCCAGC
1 ATTTTAATTTTCTGC
*
4826154 A-TTTAATTTTCTGT
1 ATTTTAATTTTCTGC
*
4826168 ATTTTCATTT
1 ATTTTAATTT
4826178 AAACATCTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
14 15 0.29
15 25 0.49
16 8 0.16
17 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.05, T:0.58
Consensus pattern (15 bp):
ATTTTAATTTTCTGC
Found at i:4826285 original size:4 final size:4
Alignment explanation
Indices: 4826276--4826300 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
4826266 ACGTTTCAAC
4826276 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
4826301 ACTCTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:4827622 original size:31 final size:33
Alignment explanation
Indices: 4827564--4827627 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
4827554 CCTAAACCTG
4827564 AACCCGAATATCACACTTCAAAAAAACC-GACCC
1 AACCCGAATATCACACTT-AAAAAAACCTGACCC
4827597 AACCCGAATATCACACTT-AAAAAACCTGACC
1 AACCCGAATATCACACTTAAAAAAACCTGACC
4827628 TGACCCGACC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 8 0.27
32 4 0.13
33 18 0.60
ACGTcount: A:0.45, C:0.34, G:0.06, T:0.14
Consensus pattern (33 bp):
AACCCGAATATCACACTTAAAAAAACCTGACCC
Found at i:4827634 original size:32 final size:32
Alignment explanation
Indices: 4827559--4827635 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 32
4827549 TTCACCCTAA
4827559 ACCTGAACCCGAATATCACACTTCAAAAAAACCG
1 ACCTG-ACCCGAATATCACACTT-AAAAAAACCG
**
4827593 ACCCAACCCGAATATCACACTT-AAAAAACCTG
1 ACCTGACCCGAATATCACACTTAAAAAAACC-G
4827625 ACCTGACCCGA
1 ACCTGACCCGA
4827636 CCCGAACCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 8 0.21
32 10 0.26
33 17 0.45
34 3 0.08
ACGTcount: A:0.42, C:0.35, G:0.09, T:0.14
Consensus pattern (32 bp):
ACCTGACCCGAATATCACACTTAAAAAAACCG
Found at i:4829634 original size:18 final size:19
Alignment explanation
Indices: 4829597--4829634 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4829587 GTAATGATGA
*
4829597 AAACTCTTTTGGACGAATG
1 AAACTCTTTTGGAAGAATG
*
4829616 AAACTCTTTT-TAAGAATG
1 AAACTCTTTTGGAAGAATG
4829634 A
1 A
4829635 TTACATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (19 bp):
AAACTCTTTTGGAAGAATG
Found at i:4834414 original size:139 final size:138
Alignment explanation
Indices: 4834010--4834448 Score: 426
Period size: 139 Copynumber: 3.2 Consensus size: 138
4834000 CAAATTATTT
* * * *
4834010 CCTAAAACGACTAGACTTCCTCAACACGAAGGAACAATGTCGTCCA-TCGACCAAATCTCTTCAA
1 CCTAAAACGGCTAGACTTCCTCAACACGAAAGAACAATGTCGTCCACT-GACCATATCTCCTCAA
* * * * * *
4834074 CGCGTAGGAGCAACGTCAACCTCAGGCAATCAGACTTTCTCGTC-ACG-TAA-GAA-CTGTGTTA
65 CGCGAAGGAGCAACGTCATCCTCAGACAACCAGAC-TTC-C-TCAACGCAAAGGAATC-GTGTTG
*
4834135 TCTCTAAATCATC
126 TCTCCAAATCATC
* *
4834148 CCTAAAGACGGCTAGACGTCCTCAACA-AAAAGGAACAATGTCGTCCACTGACCATATCTCCTCA
1 CCTAAA-ACGGCTAGACTTCCTCAACACGAAA-GAACAATGTCGTCCACTGACCATATCTCCTCA
*** ** * * * *
4834212 ATATGAAGGAGCATTGTCATCATCAGACAACCAGACTTCCTCAAAGCGAAGAAATCGTGTTGTCT
64 ACGCGAAGGAGCAACGTCATCCTCAGACAACCAGACTTCCTCAACGCAAAGGAATCGTGTTGTCT
**
4834277 CCAAATTTTC
129 CCAAATCATC
* *
4834287 TTCTAAAACGGCTAGACTTGCTCAACACGAAAGAACAATGTCGTCCACTGACCATATCTCCTCAA
1 -CCTAAAACGGCTAGACTTCCTCAACACGAAAGAACAATGTCGTCCACTGACCATATCTCCTCAA
* * * * * *
4834352 CGCGAAAGAGCAGCGTCATCCTCAGACAACCAAACTTCCTCAACGCAAAGGAATCATATTGTCTA
65 CGCGAAGGAGCAACGTCATCCTCAGACAACCAGACTTCCTCAACGCAAAGGAATCGTGTTGTCTC
* *
4834417 TAAATTAT-
130 CAAATCATC
**
4834425 CC-AAATTGGCTAGACTTCCTCAAC
1 CCTAAAACGGCTAGACTTCCTCAAC
4834449 GAGAAGGAGC
Statistics
Matches: 245, Mismatches: 47, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
136 21 0.09
137 4 0.02
138 13 0.05
139 197 0.80
140 10 0.04
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (138 bp):
CCTAAAACGGCTAGACTTCCTCAACACGAAAGAACAATGTCGTCCACTGACCATATCTCCTCAAC
GCGAAGGAGCAACGTCATCCTCAGACAACCAGACTTCCTCAACGCAAAGGAATCGTGTTGTCTCC
AAATCATC
Found at i:4834700 original size:61 final size:61
Alignment explanation
Indices: 4834516--4834700 Score: 144
Period size: 61 Copynumber: 3.0 Consensus size: 61
4834506 TCGTCTTTAG
* * * *
4834516 CACCAAATTATCTCTAGATTGACCTGACTTCCTCAACGAGAAAAAACATCGTCATCTTTAA
1 CACCAAATTATCTCCAGATTGACCTGATTTCCTCAACGAGAAAGAACATCGTCATCTTCAA
* * * * ** * * * * * **
4834577 CAAACAATTTATCT-GAAAGCGA-CTAGATCTT-TTCAAC-ACGGATGAATATAGTTGTCTTCAA
1 C-ACCAAATTATCTCCAGATTGACCT-GAT-TTCCTCAACGA-GAAAGAACATCGTCATCTTCAA
*
4834638 CACCAAATTATCTCCAGATTGACCTGATTTCCTCAACGAGAAGGAACATCGTCATCTTCAA
1 CACCAAATTATCTCCAGATTGACCTGATTTCCTCAACGAGAAAGAACATCGTCATCTTCAA
4834699 CA
1 CA
4834701 AACAATTTAT
Statistics
Matches: 87, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
60 15 0.17
61 57 0.66
62 15 0.17
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.28
Consensus pattern (61 bp):
CACCAAATTATCTCCAGATTGACCTGATTTCCTCAACGAGAAAGAACATCGTCATCTTCAA
Found at i:4834814 original size:122 final size:122
Alignment explanation
Indices: 4834484--4834816 Score: 415
Period size: 122 Copynumber: 2.7 Consensus size: 122
4834474 CGACCAGAAC
* * * * *
4834484 TCTTCAACATGGATGAGCATTGTCGTCTTTAGCACCAAATTATCTCTAGATTGACCTGACTTCCT
1 TCTTCAACATGGATGAGCA-TGTTGTCTTCAACACCAAATTATCTCCAGATTGACCTGAATTCCT
* * *
4834549 CAACGAGAAAAAACATCGTCATCTTTAACAAACAATTTATCTGAAAGCGACTAGATCT
65 CAACGAGAAGAAACATCGTCATCTTCAACAAACAATTTATCTGAAAGCAACTAGATCT
* ** *
4834607 T-TTCAACACGGATGAATATAGTTGTCTTCAACACCAAATTATCTCCAGATTGACCTGATTTCCT
1 TCTTCAACATGGATGAGCAT-GTTGTCTTCAACACCAAATTATCTCCAGATTGACCTGAATTCCT
*
4834671 CAACGAGAAGGAACATCGTCATCTTCAACAAACAATTTATCTGAAAGCAA-TCAGAT-T
65 CAACGAGAAGAAACATCGTCATCTTCAACAAACAATTTATCTGAAAGCAACT-AGATCT
* * * * *
4834728 TCTTCAACATGGATGAGCAGTGTTGTCTTCAACACCAAGTTATATCCAGATTAACTTGAAGTCCT
1 TCTTCAACATGGATGAGCA-TGTTGTCTTCAACACCAAATTATCTCCAGATTGACCTGAATTCCT
4834793 CAAC-ATGAAGAAACAAT-GTCATCT
65 CAACGA-GAAGAAAC-ATCGTCATCT
4834817 CTGAATCCTC
Statistics
Matches: 182, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
121 5 0.03
122 173 0.95
123 4 0.02
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (122 bp):
TCTTCAACATGGATGAGCATGTTGTCTTCAACACCAAATTATCTCCAGATTGACCTGAATTCCTC
AACGAGAAGAAACATCGTCATCTTCAACAAACAATTTATCTGAAAGCAACTAGATCT
Found at i:4835781 original size:29 final size:29
Alignment explanation
Indices: 4835749--4835810 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
4835739 TTATGATGTG
**
4835749 TTATCTAATTGCATATTAATTACTAACTT
1 TTATCTAATTGCATATTAACCACTAACTT
* ** *
4835778 TTATTTTGTTGCGTATTAACCACTAACTT
1 TTATCTAATTGCATATTAACCACTAACTT
4835807 TTAT
1 TTAT
4835811 TTTCCTGCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (29 bp):
TTATCTAATTGCATATTAACCACTAACTT
Found at i:4836044 original size:116 final size:112
Alignment explanation
Indices: 4835865--4836154 Score: 368
Period size: 112 Copynumber: 2.5 Consensus size: 112
4835855 ATTACTCGAC
* * *
4835865 CTTGTGGTGACCCGGTCCGGGGTAAGATCCATATTATTATGGTTCAGACTTTGCTAACTACTAAA
1 CTTGTGGTGACCCGATCTGGGGTAAGATCC--ATTATTATGGTTCAGACTTTGCTAACCACT-AA
*
4835930 TTTTTTATTTATTTTATTTTATTTTTATATATTGTTTGCA-TATTCGATTCAAT
63 ---TTT-TTTATTTTATTTTATTTTTATATATTGTTTGCATTATTAGATTCAAT
* *
4835983 CTTGTGGTGACTCGATCTGGGGTCAGATCCATTATTATGGTTC-GAACTTTGCTAACCACTAATT
1 CTTGTGGTGACCCGATCTGGGGTAAGATCCATTATTATGGTTCAG-ACTTTGCTAACCACTAATT
* **
4836047 TTTTATTTTATTTTATTTTTATATATTTTTTGCATTATTAGATTCGTT
65 TTTTATTTTATTTTATTTTTATATATTGTTTGCATTATTAGATTCAAT
* * *
4836095 ATTGTGGTGACCCGATCTGGGATAAGATCTACATTATTATGGTTCAGACTCTGCTAACCA
1 CTTGTGGTGACCCGATCTGGGGTAAGATC--CATTATTATGGTTCAGACTTTGCTAACCA
4836155 TTAACATCTA
Statistics
Matches: 153, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
111 32 0.21
112 38 0.25
114 26 0.17
115 4 0.03
116 27 0.18
118 26 0.17
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (112 bp):
CTTGTGGTGACCCGATCTGGGGTAAGATCCATTATTATGGTTCAGACTTTGCTAACCACTAATTT
TTTATTTTATTTTATTTTTATATATTGTTTGCATTATTAGATTCAAT
Found at i:4836244 original size:36 final size:38
Alignment explanation
Indices: 4836192--4836271 Score: 121
Period size: 36 Copynumber: 2.2 Consensus size: 38
4836182 ATATTCTAAC
*
4836192 TTTTA-TTTTATTGTTCATACTAACTTACTGAC-TTT-
1 TTTTATTTTTATTGTTCATACTAACTTACTAACATTTA
*
4836227 TTTTATTTTTATTGTTCATATTAACTTACTAACATTTA
1 TTTTATTTTTATTGTTCATACTAACTTACTAACATTTA
4836265 TTTTATT
1 TTTTATT
4836272 GCACAAACTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 5 0.12
36 25 0.62
37 3 0.08
38 7 0.17
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.60
Consensus pattern (38 bp):
TTTTATTTTTATTGTTCATACTAACTTACTAACATTTA
Found at i:4845809 original size:20 final size:20
Alignment explanation
Indices: 4845781--4845823 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4845771 CTTATTCCAT
4845781 AATAATTATTTAATAAAATA
1 AATAATTATTTAATAAAATA
* * *
4845801 AATATTTATTTTATTAAATA
1 AATAATTATTTAATAAAATA
4845821 AAT
1 AAT
4845824 CAAATTACCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATAATTATTTAATAAAATA
Found at i:4847674 original size:53 final size:52
Alignment explanation
Indices: 4847616--4847727 Score: 145
Period size: 53 Copynumber: 2.2 Consensus size: 52
4847606 CACAATAAAC
* * *
4847616 CAACACAAGATGTGCAAAACAAAAATATTACATAAGAGTATCAAGTCTCAATT
1 CAACACAAGATGTGCAAAACAAAAATATCACACAAGAGTATCAAATCTCAA-T
* * **
4847669 CAACACAAGATGTTCATATTAAAAATATCACACAAGAGTATCAAATCTCAAT
1 CAACACAAGATGTGCAAAACAAAAATATCACACAAGAGTATCAAATCTCAAT
4847721 -AACACAA
1 CAACACAA
4847728 TAAAATCAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
51 7 0.13
52 1 0.02
53 44 0.85
ACGTcount: A:0.50, C:0.19, G:0.09, T:0.22
Consensus pattern (52 bp):
CAACACAAGATGTGCAAAACAAAAATATCACACAAGAGTATCAAATCTCAAT
Found at i:4847774 original size:64 final size:65
Alignment explanation
Indices: 4847668--4847796 Score: 188
Period size: 64 Copynumber: 2.0 Consensus size: 65
4847658 AAGTCTCAAT
* * *
4847668 TCAACACAAGATGTTCATATTAAAAATATCACACAAGAGTATCAAATCTCAATAACACAATAAAA
1 TCAACACAAGATGTTCAAAATAAAAATATCACACAAGAGTATCAAATCTCAACAACACAATAAAA
* * * *
4847733 TCAACATAAGATGTTCAAAAT-AAAATATCACACAAGAGTATCAAGTCTTAACAACATAATAAAA
1 TCAACACAAGATGTTCAAAATAAAAATATCACACAAGAGTATCAAATCTCAACAACACAATAAAA
4847797 GAGGTAGTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
64 39 0.68
65 18 0.32
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (65 bp):
TCAACACAAGATGTTCAAAATAAAAATATCACACAAGAGTATCAAATCTCAACAACACAATAAAA
Found at i:4849159 original size:21 final size:21
Alignment explanation
Indices: 4849133--4849176 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
4849123 TCACAAGAGT
4849133 TCGAACTTTCATAATGGAAAA
1 TCGAACTTTCATAATGGAAAA
4849154 TCGAACTTTCATAATGGAAAA
1 TCGAACTTTCATAATGGAAAA
4849175 TC
1 TC
4849177 AAGTTCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (21 bp):
TCGAACTTTCATAATGGAAAA
Found at i:4857705 original size:3 final size:3
Alignment explanation
Indices: 4857697--4857727 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
4857687 TGAGCTTAAG
*
4857697 AGA AGA AGA GGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
4857728 TTCTGTTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:4860467 original size:31 final size:30
Alignment explanation
Indices: 4860410--4860513 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 30
4860400 CTTTTTCATT
4860410 TAAGTATCTAAAG-TATTTTTTAGTCAAAA
1 TAAGTATCTAAAGTTATTTTTTAGTCAAAA
* *
4860439 TAAGTACCTAAAGTTATCTTTTTGGTCAAAA
1 TAAGTATCTAAAGTTAT-TTTTTAGTCAAAA
* * * *
4860470 TAGGCATCTAAAATTTTTTTTTAGTCAAAA
1 TAAGTATCTAAAGTTATTTTTTAGTCAAAA
*
4860500 TAGGTATCTAAAGT
1 TAAGTATCTAAAGT
4860514 ATTCAACTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
29 12 0.19
30 27 0.43
31 24 0.38
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (30 bp):
TAAGTATCTAAAGTTATTTTTTAGTCAAAA
Found at i:4860822 original size:17 final size:18
Alignment explanation
Indices: 4860802--4860843 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
4860792 ATTTTTAAAA
4860802 TATTA-AAATAAT-TTATT
1 TATTATAAA-AATATTATT
4860819 TATTATAAAAATATTATT
1 TATTATAAAAATATTATT
4860837 T-TTATAA
1 TATTATAA
4860844 TTTTATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TATTATAAAAATATTATT
Found at i:4860862 original size:12 final size:12
Alignment explanation
Indices: 4860847--4860890 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
4860837 TTTATAATTT
4860847 TATTAATAAAAA
1 TATTAATAAAAA
4860859 TATTAAATAAAAA
1 TATT-AATAAAAA
*
4860872 TATT-ATAAATTA
1 TATTAATAAA-AA
4860884 TATTAAT
1 TATTAAT
4860891 TATTTACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 5 0.18
12 9 0.32
13 14 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TATTAATAAAAA
Found at i:4860961 original size:23 final size:23
Alignment explanation
Indices: 4860917--4860961 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
4860907 ATTGTTATAT
*
4860917 TATATTTTAAAAATGTTAATTAG
1 TATATTTTAAAAATCTTAATTAG
* *
4860940 TATATTTTAAATATCTTTATTA
1 TATATTTTAAAAATCTTAATTA
4860962 AAATATTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (23 bp):
TATATTTTAAAAATCTTAATTAG
Found at i:4860967 original size:23 final size:23
Alignment explanation
Indices: 4860918--4860968 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
4860908 TTGTTATATT
* **
4860918 ATATTTTAAAAATGTTAATTAGT
1 ATATTTTAAAAATCTTAATTAAA
* *
4860941 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAAAATCTTAATTAAA
4860964 ATATT
1 ATATT
4860969 ATTAGATTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
ATATTTTAAAAATCTTAATTAAA
Found at i:4861098 original size:23 final size:24
Alignment explanation
Indices: 4861075--4861122 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 24
4861065 TTTTATTAAT
4861075 AATTTAT-TATATATTATTAAAATAAA
1 AATTTATAT-TATATTATTAAAAT--A
4861101 AATTTATATTATATTATTAAAA
1 AATTTATATTATATTATTAAAA
4861123 ATATTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTTATATTATATTATTAAAATA
Found at i:4861152 original size:23 final size:23
Alignment explanation
Indices: 4861110--4861165 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
4861100 AAATTTATAT
4861110 TATATTATTAAAAATATTAATAAA
1 TATATT-TTAAAAATATTAATAAA
* * *
4861134 TATATTTTAAATATTTTAATAAT
1 TATATTTTAAAAATATTAATAAA
4861157 TAATATTTT
1 T-ATATTTT
4861166 GATTAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATATTTTAAAAATATTAATAAA
Found at i:4861197 original size:11 final size:11
Alignment explanation
Indices: 4861183--4861210 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4861173 ATGAAATTAA
4861183 AATATTTTATT
1 AATATTTTATT
4861194 AATATTTTATT
1 AATATTTTATT
4861205 AATATT
1 AATATT
4861211 AAATTTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
AATATTTTATT
Found at i:4864272 original size:21 final size:21
Alignment explanation
Indices: 4864248--4864300 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
4864238 TGAGAGGTAA
4864248 AGTAACGATACTCTCAATAGG
1 AGTAACGATACTCTCAATAGG
4864269 AGTAACGATACTCTCAATAGG
1 AGTAACGATACTCTCAATAGG
* *
4864290 GGTATCGATAC
1 AGTAACGATAC
4864301 CGAGTGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (21 bp):
AGTAACGATACTCTCAATAGG
Found at i:4868441 original size:54 final size:54
Alignment explanation
Indices: 4868359--4868466 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
4868349 TTATTCCATA
* * *
4868359 TGGTTATCTTAAAGGTCGTGATTTAAATATGTTTAAGCAAATGATAGCCTTCAT
1 TGGTTATCTTAAAGATCGTGATTTAAATATGGTTAAGCAAATGATAACCTTCAT
4868413 TGGTTATCTTAAAGATCGTGATTTAAATATGGTTAAGCAAATGATAACCTTCAT
1 TGGTTATCTTAAAGATCGTGATTTAAATATGGTTAAGCAAATGATAACCTTCAT
4868467 GTATTATTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (54 bp):
TGGTTATCTTAAAGATCGTGATTTAAATATGGTTAAGCAAATGATAACCTTCAT
Found at i:4870979 original size:20 final size:21
Alignment explanation
Indices: 4870954--4871005 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4870944 TTTTCCCAAT
*
4870954 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
4870974 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
4870995 TCGCAATGCGA
1 TCGCAATGCGA
4871006 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:4871019 original size:20 final size:20
Alignment explanation
Indices: 4870994--4871108 Score: 108
Period size: 20 Copynumber: 5.7 Consensus size: 20
4870984 AATTGGGAAA
*
4870994 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
4871014 ATCGCAATGCGATACCT-ACT
1 ATCGCAACGCGATA-CTGACT
* * *
4871034 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
4871055 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
4871075 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
4871095 TTCGCAACGCGATA
1 ATCGCAACGCGATA
4871109 ATACATAATC
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
19 3 0.04
20 61 0.75
21 15 0.19
22 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:4871038 original size:61 final size:61
Alignment explanation
Indices: 4870991--4871118 Score: 168
Period size: 61 Copynumber: 2.1 Consensus size: 61
4870981 GCGAATTGGG
* * * *
4870991 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACCT-ACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGAT-CCTGACTATCGCAACGCGATAATAC
* * *
4871052 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATCCTGACTATCGCAACGCGATAATAC
*
4871113 ATAATC
1 AAAATC
4871119 ACAATGCGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 2 0.03
61 56 0.97
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATCCTGACTATCGCAACGCGATAATAC
Found at i:4871324 original size:22 final size:22
Alignment explanation
Indices: 4871296--4871339 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4871286 CACTCTCTCA
**
4871296 CCCATCTCCTTCGAAATCCGTC
1 CCCATCTCCGGCGAAATCCGTC
4871318 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGGCGAAATCCGTC
4871340 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.45, G:0.14, T:0.23
Consensus pattern (22 bp):
CCCATCTCCGGCGAAATCCGTC
Found at i:4871655 original size:20 final size:20
Alignment explanation
Indices: 4871601--4871659 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
4871591 GCGATTCTCT
**
4871601 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
4871621 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
4871641 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
4871660 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:4873000 original size:18 final size:18
Alignment explanation
Indices: 4872979--4873023 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
4872969 TCCACTTCGG
*
4872979 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
4872997 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
4873015 GAGCCATCA
1 GAGCCATCA
4873024 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:4873530 original size:20 final size:20
Alignment explanation
Indices: 4873505--4873550 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4873495 TAGTTTACTT
4873505 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
* * *
4873525 TCGCAACGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
4873545 TCGCAA
1 TCGCAA
4873551 AGCGAAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:4873559 original size:19 final size:20
Alignment explanation
Indices: 4873516--4873560 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4873506 CGCAACACGA
*
4873516 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAAAGCGG
*
4873536 AAATGGCTATCGCAAAGC-G
1 AAATGACTATCGCAAAGCGG
4873555 AAATGA
1 AAATGA
4873561 AAATCGCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (20 bp):
AAATGACTATCGCAAAGCGG
Found at i:4873566 original size:19 final size:19
Alignment explanation
Indices: 4873544--4873635 Score: 69
Period size: 19 Copynumber: 5.4 Consensus size: 19
4873534 GGAAATGGCT
4873544 ATCGCAAAGCGAAATGAAA
1 ATCGCAAAGCGAAATGAAA
*
4873563 ATCGC-AA-CG--A-CAAA
1 ATCGCAAAGCGAAATGAAA
* *
4873577 ATCGCAATGCGAAATGATA
1 ATCGCAAAGCGAAATGAAA
*
4873596 ATCGC-AA-CG--A-CAAA
1 ATCGCAAAGCGAAATGAAA
*
4873610 ATCGCAACGCGAAATGAAA
1 ATCGCAAAGCGAAATGAAA
4873629 ATCGCAA
1 ATCGCAA
4873636 TACGATTTGT
Statistics
Matches: 54, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
14 15 0.28
15 4 0.07
16 4 0.07
17 4 0.07
18 5 0.09
19 22 0.41
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (19 bp):
ATCGCAAAGCGAAATGAAA
Found at i:4873579 original size:14 final size:14
Alignment explanation
Indices: 4873560--4873618 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
4873550 AAGCGAAATG
4873560 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
4873574 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
4873590 ATGATAATCGCAACGAC
1 A--A-AATCGCAACGAC
4873607 AAAATCGCAACG
1 AAAATCGCAACG
4873619 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 20 0.53
15 1 0.03
16 4 0.11
17 4 0.11
18 1 0.03
19 8 0.21
ACGTcount: A:0.47, C:0.24, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4873589 original size:33 final size:33
Alignment explanation
Indices: 4873544--4873635 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
4873534 GGAAATGGCT
4873544 ATCGCAAAGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAAAGCGAAATGAAAATCGCAACGACAAA
* *
4873577 ATCGCAATGCGAAATGATAATCGCAACGACAAA
1 ATCGCAAAGCGAAATGAAAATCGCAACGACAAA
*
4873610 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAAAGCGAAATGAAAATCGCAA
4873636 TACGATTTGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (33 bp):
ATCGCAAAGCGAAATGAAAATCGCAACGACAAA
Found at i:4873723 original size:33 final size:33
Alignment explanation
Indices: 4873647--4873758 Score: 181
Period size: 33 Copynumber: 3.4 Consensus size: 33
4873637 ACGATTTGTG
* *
4873647 TTTCGCGTTGTGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
4873679 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
* *
4873712 TTTTGCTTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
4873745 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
4873759 AGCCATTTCC
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
32 25 0.34
33 48 0.66
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:4873729 original size:13 final size:14
Alignment explanation
Indices: 4873652--4873742 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 14
4873642 TTGTGTTTCG
*
4873652 CGTTGTGATTTTGT
1 CGTTGCGATTTTGT
*
4873666 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
4873682 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
4873698 CGTTGCGATTTTCATTTT
1 CGTTGCGA--TT--TTGT
*
4873716 GCTTTGCGATTTTGT
1 -CGTTGCGATTTTGT
4873731 CGTTGCGATTTT
1 CGTTGCGATTTT
4873743 CATTTCGCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
14 27 0.44
15 3 0.05
16 10 0.16
17 2 0.03
18 12 0.20
19 7 0.11
ACGTcount: A:0.10, C:0.15, G:0.23, T:0.52
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:4873777 original size:20 final size:19
Alignment explanation
Indices: 4873743--4873798 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
4873733 TTGCGATTTT
*
4873743 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
4873762 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
4873782 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
4873799 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4874181 original size:15 final size:15
Alignment explanation
Indices: 4874161--4874190 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4874151 AGACTCACCT
4874161 GTCATCCCTCAAGAG
1 GTCATCCCTCAAGAG
4874176 GTCATCCCTCAAGAG
1 GTCATCCCTCAAGAG
4874191 TCCCCTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (15 bp):
GTCATCCCTCAAGAG
Found at i:4874273 original size:41 final size:41
Alignment explanation
Indices: 4874177--4874264 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
4874167 CCTCAAGAGG
* * *
4874177 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
* *
4874219 TCCTCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
4874260 TCATC
1 TCATC
4874265 GTTGAAGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 22 0.55
42 18 0.45
ACGTcount: A:0.22, C:0.43, G:0.15, T:0.20
Consensus pattern (41 bp):
TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:4875842 original size:14 final size:14
Alignment explanation
Indices: 4875823--4875911 Score: 52
Period size: 14 Copynumber: 5.6 Consensus size: 14
4875813 GAAACTGACT
4875823 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
4875837 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
*
4875856 ATCGCAACGAAAGA
1 ATCGCAACGAGAGA
* *
4875870 ATCGCAATGTGAAATGAAA
1 ATCGCAA--CG--A-GAGA
4875889 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
4875903 ATCGCAACG
1 ATCGCAACG
4875912 CGAAATGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
14 28 0.49
15 2 0.04
16 3 0.05
17 3 0.05
18 2 0.04
19 19 0.33
ACGTcount: A:0.45, C:0.19, G:0.24, T:0.12
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:4875865 original size:33 final size:33
Alignment explanation
Indices: 4875823--4875931 Score: 191
Period size: 33 Copynumber: 3.3 Consensus size: 33
4875813 GAAACTGACT
4875823 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* *
4875856 ATCGCAACGAAAGAATCGCAATGTGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
*
4875889 ATCGCAACGAGAGAATCGCAACGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
4875922 ATCGCAACGA
1 ATCGCAACGA
4875932 CAAAATATCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (33 bp):
ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
Found at i:4875930 original size:19 final size:18
Alignment explanation
Indices: 4875836--4875928 Score: 85
Period size: 19 Copynumber: 5.4 Consensus size: 18
4875826 GCAACGAGAG
4875836 AATCGCAATGCGAAATGAA
1 AATCGCAA-GCGAAATGAA
4875855 AATCGCAA-CGAAA-G--
1 AATCGCAAGCGAAATGAA
*
4875869 AATCGCAATGTGAAATGAA
1 AATCGCAA-GCGAAATGAA
*
4875888 AATCGCAA-CG--A-GAG
1 AATCGCAAGCGAAATGAA
4875902 AATCGCAACGCGAAATGAA
1 AATCGCAA-GCGAAATGAA
4875921 AATCGCAA
1 AATCGCAA
4875929 CGACAAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
14 18 0.30
15 1 0.02
16 7 0.12
17 7 0.12
18 1 0.02
19 26 0.43
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (18 bp):
AATCGCAAGCGAAATGAA
Found at i:4875944 original size:33 final size:32
Alignment explanation
Indices: 4875804--4875962 Score: 160
Period size: 33 Copynumber: 4.8 Consensus size: 32
4875794 AAATAGACTG
* ** *
4875804 TCGCAACACGAAACTGACTATCGCAACGAGAGAA
1 TCGCAACGCGAAA-TGAAAATCGCAACGA-AAAA
*
4875838 TCGCAATGCGAAATGAAAATCGCAACGAAAGAA
1 TCGCAACGCGAAATGAAAATCGCAACGAAA-AA
* * *
4875871 TCGCAATGTGAAATGAAAATCGCAACGAGAGAA
1 TCGCAACGCGAAATGAAAATCGCAACGA-AAAA
4875904 TCGCAACGCGAAATGAAAATCGCAACGACAAAA
1 TCGCAACGCGAAATGAAAATCGCAACGA-AAAA
**
4875937 TATCAACGCGAAACT--AAATCGCAACG
1 TCGCAACGCGAAA-TGAAAATCGCAACG
4875963 CGAAACTAAA
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
32 12 0.11
33 84 0.77
34 13 0.12
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.13
Consensus pattern (32 bp):
TCGCAACGCGAAATGAAAATCGCAACGAAAAA
Found at i:4875976 original size:19 final size:19
Alignment explanation
Indices: 4875902--4875977 Score: 76
Period size: 18 Copynumber: 4.3 Consensus size: 19
4875892 GCAACGAGAG
4875902 AATCGCAACGCGAAA-TGAA
1 AATCGCAACGCGAAACT-AA
4875921 AATCGCAA--CG--AC-AA
1 AATCGCAACGCGAAACTAA
**
4875935 AATATCAACGCGAAACT-A
1 AATCGCAACGCGAAACTAA
4875953 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
4875972 AATCGC
1 AATCGC
4875978 GTTGCGATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
14 8 0.17
15 1 0.02
16 2 0.04
17 2 0.04
18 18 0.39
19 15 0.33
ACGTcount: A:0.47, C:0.25, G:0.16, T:0.12
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:4876019 original size:33 final size:33
Alignment explanation
Indices: 4875977--4876070 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
4875967 ACTAAAATCG
* *
4875977 CGTTGCGATTTTGATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCAT
*
4876010 CGTTGCGATTTTCATTTCGCATTGCGATTCTAT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCAT
4876043 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
4876071 GGTCAAATGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCAT
Found at i:4876036 original size:19 final size:19
Alignment explanation
Indices: 4875974--4876070 Score: 79
Period size: 19 Copynumber: 5.6 Consensus size: 19
4875964 GAAACTAAAA
* *
4875974 TCGCGTTGCGATTTTGATT
1 TCGCATTGCGATTTTCATT
**
4875993 TCGCATTGCGA--TTC-CC
1 TCGCATTGCGATTTTCATT
4876009 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
4876026 TCGCATTGCGA--TTC-TA
1 TCGCATTGCGATTTTCATT
4876042 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
4876059 TCGCATTGCGAT
1 TCGCATTGCGAT
4876071 GGTCAAATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
14 12 0.20
16 13 0.22
17 12 0.20
19 23 0.38
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:4876314 original size:20 final size:20
Alignment explanation
Indices: 4876289--4876339 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
4876279 TTTTGATTGC
4876289 CTTTCGCAACGCGATTCTGA
1 CTTTCGCAACGCGATTCTGA
4876309 CTTTCGCAACGCGATTCTGA
1 CTTTCGCAACGCGATTCTGA
4876329 CTTTCGCAACG
1 CTTTCGCAACG
4876340 AGATAATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (20 bp):
CTTTCGCAACGCGATTCTGA
Found at i:4877105 original size:24 final size:24
Alignment explanation
Indices: 4877078--4877131 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
4877068 GTATTCGAAA
*
4877078 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
4877102 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
4877126 TTTGAT
1 TTTGAT
4877132 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:4879609 original size:33 final size:33
Alignment explanation
Indices: 4879556--4879682 Score: 148
Period size: 33 Copynumber: 3.8 Consensus size: 33
4879546 GGAAATTACT
* * *
4879556 ATCGTAATGCGAAATAAAAATCGCAACGAGAGA
1 ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
* *
4879589 ATCACAATGCAAAATGAAAATCGCAACGCGA-A
1 ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
* *
4879621 TTTCGCAATGCAAAATGAAAATCGCAACGAGTGA
1 -ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
* * *
4879655 ATCGCAATACTAAATGAAAATAGCAACG
1 ATCGCAATGCAAAATGAAAATCGCAACG
4879683 CGAATTTAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
32 1 0.01
33 77 0.97
34 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.17
Consensus pattern (33 bp):
ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
Found at i:4879649 original size:66 final size:66
Alignment explanation
Indices: 4879561--4879689 Score: 195
Period size: 66 Copynumber: 2.0 Consensus size: 66
4879551 TTACTATCGT
* * *
4879561 AATGCGAAATAAAAATCGCAACGAGAGAATCACAATGCAAAATGAAAATCGCAACGCGAATTTCG
1 AATGCAAAATAAAAATCGCAACGAGAGAATCACAATACAAAATGAAAATAGCAACGCGAATTTCG
4879626 C
66 C
* * * *
4879627 AATGCAAAATGAAAATCGCAACGAGTGAATCGCAATACTAAATGAAAATAGCAACGCGAATTT
1 AATGCAAAATAAAAATCGCAACGAGAGAATCACAATACAAAATGAAAATAGCAACGCGAATTT
4879690 AATTTCGCGT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.17
Consensus pattern (66 bp):
AATGCAAAATAAAAATCGCAACGAGAGAATCACAATACAAAATGAAAATAGCAACGCGAATTTCG
C
Found at i:4879733 original size:33 final size:33
Alignment explanation
Indices: 4879682--4879771 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
4879672 AAATAGCAAC
* *
4879682 GCGAATTTAATTTCGCGTTGCGATTCTCTCATT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCATT
*
4879715 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCATT
* *
4879748 GCAATTTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
4879772 AGTACTTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCTCTCATT
Found at i:4879737 original size:19 final size:19
Alignment explanation
Indices: 4879713--4879771 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
4879703 GATTCTCTCA
4879713 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
4879732 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCGCG
* *
4879746 TTGCAATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCG
4879765 TTGCGAT
1 TTGCGAT
4879772 AGTACTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
14 9 0.30
16 3 0.10
17 3 0.10
19 15 0.50
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCG
Found at i:4879898 original size:14 final size:14
Alignment explanation
Indices: 4879879--4879914 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
4879869 CATCAATTAA
*
4879879 ACAAATCAGCTTTT
1 ACAAATCACCTTTT
4879893 ACAAATCACCTTTT
1 ACAAATCACCTTTT
4879907 ACAAATCA
1 ACAAATCA
4879915 ATTAAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.31
Consensus pattern (14 bp):
ACAAATCACCTTTT
Found at i:4881357 original size:42 final size:42
Alignment explanation
Indices: 4881272--4881365 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
4881262 GTGAATCGGG
* *
4881272 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
* * *
4881314 CTCTTGAACGGTGGGATGGGA-CTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACCTCTTCAACG-ATGACAGGGGC
*
4881356 CTCTTCAACG
1 CTCTTGAACG
4881366 ATAGGAGTGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 4 0.09
42 36 0.82
43 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
Found at i:4881721 original size:94 final size:94
Alignment explanation
Indices: 4881609--4881799 Score: 346
Period size: 94 Copynumber: 2.0 Consensus size: 94
4881599 TATATTTCAA
*
4881609 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTT
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGATAAAGAATACACAGTTT
*
4881674 AGCAGAATTGGCAGCAACCGAACAAATTT
66 ACCAGAATTGGCAGCAACCGAACAAATTT
*
4881703 ACTTTCAACCAAAAGACAAATCAAAGACAAATACTAACTTCACAGTGATAAAGAATACACAGTTT
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGATAAAGAATACACAGTTT
*
4881768 ACCAGAATTGGCAGCAACCGAATAAATTT
66 ACCAGAATTGGCAGCAACCGAACAAATTT
4881797 ACT
1 ACT
4881800 AAGCAATTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.21
Consensus pattern (94 bp):
ACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGATAAAGAATACACAGTTT
ACCAGAATTGGCAGCAACCGAACAAATTT
Found at i:4883523 original size:20 final size:19
Alignment explanation
Indices: 4883492--4883613 Score: 86
Period size: 20 Copynumber: 6.8 Consensus size: 19
4883482 TCTTTTGGTT
4883492 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
4883511 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
4883532 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
4883551 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
4883565 GAAATGAACATCGCAACGA
1 GAAATGAAAATCGCAACGA
4883584 G--A-G--AATCGCAAC-A
1 GAAATGAAAATCGCAACGA
4883597 CGAAATGAAAATCGCAA
1 -GAAATGAAAATCGCAA
4883614 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
13 1 0.01
14 19 0.24
16 4 0.05
17 4 0.05
19 21 0.26
20 29 0.36
21 2 0.03
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:4883536 original size:40 final size:36
Alignment explanation
Indices: 4883492--4883613 Score: 130
Period size: 33 Copynumber: 3.4 Consensus size: 36
4883482 TCTTTTGGTT
4883492 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAG--AA-GAGAATCGCAACGC
**
4883531 GGAAATGACTATCGCAAC--G-AGAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAAGAGAATCGCAACGC
* *
4883565 GAAATGAACATCGCAAC--G-AGAGAATCGCAACAC
1 GAAATGAAAATCGCAACGAGAAGAGAATCGCAACGC
4883598 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
4883614 TGCGATTTTG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
33 45 0.59
34 14 0.18
35 1 0.01
38 1 0.01
40 15 0.20
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.11
Consensus pattern (36 bp):
GAAATGAAAATCGCAACGAGAAGAGAATCGCAACGC
Found at i:4883560 original size:14 final size:14
Alignment explanation
Indices: 4883541--4883595 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
4883531 GGAAATGACT
4883541 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
4883555 ATCGCAACGCGAAATGAA
1 ATCGCAA--CGAGA-G-A
4883573 CATCGCAACGAGAGA
1 -ATCGCAACGAGAGA
4883588 ATCGCAAC
1 ATCGCAAC
4883596 ACGAAATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 15 0.44
15 1 0.03
16 5 0.15
17 5 0.15
18 1 0.03
19 7 0.21
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.09
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:4883578 original size:33 final size:33
Alignment explanation
Indices: 4883517--4883613 Score: 151
Period size: 33 Copynumber: 2.9 Consensus size: 33
4883507 ACGAGATAAT
4883517 GAGAATCGCAACGCGGAAATG-ACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGAAC-ATCGCAACGA
4883551 GAGAATCGCAACGCGAAATGAACATCGCAACGA
1 GAGAATCGCAACGCGAAATGAACATCGCAACGA
* *
4883584 GAGAATCGCAACACGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGAACATCGCAA
4883614 TGCGATTTTG
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
33 44 0.73
34 16 0.27
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.10
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGAACATCGCAACGA
Found at i:4883640 original size:19 final size:19
Alignment explanation
Indices: 4883618--4883680 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
4883608 TCGCAATGCG
*
4883618 ATTTTGGTTTCGCGTTGCA
1 ATTTTGATTTCGCGTTGCA
*
4883637 ATTTTTATTTCGCGTTGCA
1 ATTTTGATTTCGCGTTGCA
* *
4883656 ATAGTT-ATTTCCGCGTTGCG
1 AT-TTTGATTT-CGCGTTGCA
4883676 ATTTT
1 ATTTT
4883681 CATTCTCGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 25 0.68
20 12 0.32
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (19 bp):
ATTTTGATTTCGCGTTGCA
Found at i:4883672 original size:20 final size:19
Alignment explanation
Indices: 4883625--4883674 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
4883615 GCGATTTTGG
**
4883625 TTTCGCGTTGCAATTTTTA
1 TTTCGCGTTGCAATAGTTA
4883644 TTTCGCGTTGCAATAGTTA
1 TTTCGCGTTGCAATAGTTA
4883663 TTTCCGCGTTGC
1 TTT-CGCGTTGC
4883675 GATTTTCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (19 bp):
TTTCGCGTTGCAATAGTTA
Found at i:4884225 original size:20 final size:20
Alignment explanation
Indices: 4884200--4884413 Score: 139
Period size: 20 Copynumber: 10.6 Consensus size: 20
4884190 GCTATGTAAA
4884200 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
4884220 TCGCATTGCGATTTCCCTAAT
1 TCGCATTGCGATTTACGT-AT
* *
4884241 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATTTACGTAT
4884261 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* * * * *
4884281 TCGTATTGCGAATTATGAAAA
1 TCGCATTGCGATTTACG-TAT
** * *
4884302 TCGCAACGCGA-ATACGTAAA
1 TCGCATTGCGATTTACGT-AT
* *
4884322 TCGCATTGCGATAGTAAGTA-
1 TCGCATTGCGAT-TTACGTAT
*
4884342 TCGCATTGCGATAGT-CAGTA-
1 TCGCATTGCGAT-TTAC-GTAT
* **
4884362 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACGTAT
* *
4884383 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACGTAT
*
4884403 TCACATTGCGA
1 TCGCATTGCGA
4884414 ATTGGGAAAA
Statistics
Matches: 153, Mismatches: 32, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
20 109 0.71
21 40 0.26
22 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:4884265 original size:41 final size:40
Alignment explanation
Indices: 4884200--4884413 Score: 130
Period size: 41 Copynumber: 5.3 Consensus size: 40
4884190 GCTATGTAAA
* *
4884200 TCGCATTGCGATTTACGTATTCGCATTGCGATTTCCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT-AT
* *
4884241 TCGCATTGCGATTTACTTAATCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACCTAT
* * * * ** * * *
4884281 TCGTATTGCGAATTATGAAAATCGCAACGCGA-ATACGTAAA
1 TCGCATTGCGATTTACG-TAATCGCATTGCGATTTACCT-AT
* * * *
4884322 TCGCATTGCGATAGTAAGT-ATCGCATTGCGATAGT-CAGTA-
1 TCGCATTGCGAT-TTACGTAATCGCATTGCGAT-TTAC-CTAT
* ** * *
4884362 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACCTAT
*
4884403 TCACATTGCGA
1 TCGCATTGCGA
4884414 ATTGGGAAAA
Statistics
Matches: 133, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
39 1 0.01
40 46 0.35
41 80 0.60
42 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (40 bp):
TCGCATTGCGATTTACGTAATCGCATTGCGATTTACCTAT
Found at i:4884306 original size:61 final size:61
Alignment explanation
Indices: 4884196--4884416 Score: 189
Period size: 61 Copynumber: 3.6 Consensus size: 61
4884186 TGGCGCTATG
* ** * *
4884196 TAAATCGCATTGCGATTTACGTATTCGCATTGCGATTTCCCTAATTCGCATTGCGATTTAC
1 TAAATCGCATTGCGATTTACGTATTCGCATTGCGAATTATCAAAATCGCATTGCGATTTAC
* * * ** *
4884257 TTAATCGCATTGCGATTTACGTATTCGTATTGCGAATTATGAAAATCGCAACGCGA-ATAC
1 TAAATCGCATTGCGATTTACGTATTCGCATTGCGAATTATCAAAATCGCATTGCGATTTAC
* * ** *
4884317 GTAAATCGCATTGCGATAGTAAGTA-TCGCATTGCG-A-TAGTCAGTATCGCATTGCGATTTTCC
1 -TAAATCGCATTGCGAT-TTACGTATTCGCATTGCGAATTA-TCAAAATCGCATTGCGA-TTTAC
* * * * *
4884379 CAATTCGCGTTGCGATTTACTTATTCACATTGCGAATT
1 TAAATCGCATTGCGATTTACGTATTCGCATTGCGAATT
4884417 GGGAAAATCG
Statistics
Matches: 123, Mismatches: 29, Indels: 14
0.74 0.17 0.08
Matches are distributed among these distances:
59 2 0.02
60 20 0.16
61 92 0.75
62 8 0.07
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (61 bp):
TAAATCGCATTGCGATTTACGTATTCGCATTGCGAATTATCAAAATCGCATTGCGATTTAC
Found at i:4884412 original size:122 final size:122
Alignment explanation
Indices: 4884195--4884431 Score: 300
Period size: 122 Copynumber: 1.9 Consensus size: 122
4884185 ATGGCGCTAT
* * * * **
4884195 GTAAATCGCATTGCGATTTACGTATTCGCATTGCGATTTCCCTAATTCGCATTGCGATTTACTTA
1 GTAAATCGCATTGCGATGTAAGTATTCGCATTGCGATGTCACTAATTCGCATTGCGATTTACCCA
** *
4884260 ATCGCATTGCGATTTACGTATTCGTATTGCGAATTATGAAAATCGCAACGCGAATAC
66 ATCGCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACGCGAATAC
* *
4884317 GTAAATCGCATTGCGATAGTAAGTA-TCGCATTGCGATAGTCAGT-A-TCGCATTGCGATTTTCC
1 GTAAATCGCATTGCGAT-GTAAGTATTCGCATTGCGAT-GTCACTAATTCGCATTGCGATTTACC
* * *
4884379 CAATTCGCGTTGCGATTTACTTATTCACATTGCGAATTGGGAAAATCGCAACG
64 CAA-TCGCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACG
4884432 ACACTGTAGA
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
121 17 0.17
122 73 0.74
123 8 0.08
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (122 bp):
GTAAATCGCATTGCGATGTAAGTATTCGCATTGCGATGTCACTAATTCGCATTGCGATTTACCCA
ATCGCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACGCGAATAC
Found at i:4884484 original size:21 final size:21
Alignment explanation
Indices: 4884444--4884484 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4884434 ACTGTAGACA
** *
4884444 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
4884465 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
4884485 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:4885007 original size:23 final size:24
Alignment explanation
Indices: 4884976--4885020 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
4884966 ATTTAAATCA
4884976 GTAATAAATT-TTGATTTAATTTTT
1 GTAATAAATTGTTGA-TTAATTTTT
4885000 GTAA-AAATTGTTGATTAATTT
1 GTAATAAATTGTTGATTAATTT
4885021 ATTTTATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (24 bp):
GTAATAAATTGTTGATTAATTTTT
Found at i:4886060 original size:69 final size:69
Alignment explanation
Indices: 4885983--4886156 Score: 287
Period size: 69 Copynumber: 2.5 Consensus size: 69
4885973 AAAATAGAAG
* *
4885983 CAACACTAAAACGACTTGATTTGAATAAATTAATTTATTCGAATCAAGTTGAGGCAGCTC-AGAT
1 CAACACTAAAACGACATGATTCGAATAAATTAATTTATTCGAATCAAGTTGAGGCAGCTCGA-AT
4886047 ATAAA
65 ATAAA
*
4886052 CAACACTAAAATGACATGATTCGAATAAATTAATTTATTCGAATCAAGTTGAGGCAGCTCGAATA
1 CAACACTAAAACGACATGATTCGAATAAATTAATTTATTCGAATCAAGTTGAGGCAGCTCGAATA
4886117 TAAA
66 TAAA
* *
4886121 CAACTCTAAAACGACATGATTCAAATAAATTAATTT
1 CAACACTAAAACGACATGATTCGAATAAATTAATTT
4886157 TTTAAAATAT
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
69 97 0.99
70 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (69 bp):
CAACACTAAAACGACATGATTCGAATAAATTAATTTATTCGAATCAAGTTGAGGCAGCTCGAATA
TAAA
Found at i:4886268 original size:40 final size:40
Alignment explanation
Indices: 4886210--4886303 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
4886200 AATTTATTTG
* * *
4886210 AATTAATTTATTCAAATCAAGTTGAGGCGGGTCGAATATA
1 AATTAATTTATTTAAATCAAGTCGAGACGGGTCGAATATA
* *
4886250 TATTAATTTATTTGAATCAAGTCGAGACGGGTCGAATATA
1 AATTAATTTATTTAAATCAAGTCGAGACGGGTCGAATATA
4886290 AATTAATTTATTTA
1 AATTAATTTATTTA
4886304 TTTGGGCAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (40 bp):
AATTAATTTATTTAAATCAAGTCGAGACGGGTCGAATATA
Found at i:4889891 original size:19 final size:18
Alignment explanation
Indices: 4889863--4889901 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4889853 CCAAAATAAA
4889863 AATAACAATAACAATAATT
1 AATAACAATAACAAT-ATT
* *
4889882 AATAATAATAATAATATT
1 AATAACAATAACAATATT
4889900 AA
1 AA
4889902 CGAGATATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAACAATAACAATATT
Found at i:4894749 original size:18 final size:18
Alignment explanation
Indices: 4894726--4894766 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
4894716 AACGTTAAAG
4894726 CTTGTGTAATGGAGACAA
1 CTTGTGTAATGGAGACAA
*
4894744 CTTGTGTAATGGAGACAG
1 CTTGTGTAATGGAGACAA
4894762 CTTGT
1 CTTGT
4894767 ATGAGGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (18 bp):
CTTGTGTAATGGAGACAA
Found at i:4900614 original size:32 final size:33
Alignment explanation
Indices: 4900542--4900620 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
4900532 CTAAACCCGA
4900542 ACCCGACCCAAATATCACACTTAAAAAAACCTG
1 ACCCGACCCAAATATCACACTTAAAAAAACCTG
* *
4900575 ACTCGACCCGAAA-ATCACACTTAAAAAACCCT-
1 ACCCGACCC-AAATATCACACTTAAAAAAACCTG
*
4900607 ACCCGACCAAAATA
1 ACCCGACCCAAATA
4900621 AAGTTTCACC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 3 0.08
32 8 0.20
33 26 0.65
34 3 0.08
ACGTcount: A:0.46, C:0.34, G:0.06, T:0.14
Consensus pattern (33 bp):
ACCCGACCCAAATATCACACTTAAAAAAACCTG
Found at i:4904347 original size:25 final size:26
Alignment explanation
Indices: 4904302--4904350 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
4904292 CAAAAAATTT
*
4904302 TAAAATATATTTAAGAATATTAAATG
1 TAAAATATATATAAGAATATTAAATG
4904328 TAAAA-ATATATAA-AATTATTAAA
1 TAAAATATATATAAGAA-TATTAAA
4904351 AACGAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 14 0.67
26 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (26 bp):
TAAAATATATATAAGAATATTAAATG
Found at i:4911889 original size:19 final size:19
Alignment explanation
Indices: 4911865--4911950 Score: 82
Period size: 19 Copynumber: 4.2 Consensus size: 19
4911855 GCGATTTTGA
*
4911865 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTG
*
4911884 AAAATGTGTTGCGAGAGTTTG
1 AAAATGTGTTGCGATAG--TG
4911905 AAAAACGTGTTGTTGCGATAGTG
1 -AAAA--TG-TGTTGCGATAGTG
* *
4911928 AAAAAGTGTTACGATAGTG
1 AAAATGTGTTGCGATAGTG
4911947 AAAA
1 AAAA
4911951 ATCCAAAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
19 32 0.57
20 1 0.02
21 1 0.02
22 8 0.14
23 2 0.04
24 2 0.04
25 10 0.18
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTG
Found at i:4912408 original size:21 final size:19
Alignment explanation
Indices: 4912352--4912448 Score: 86
Period size: 19 Copynumber: 4.9 Consensus size: 19
4912342 ACCAGTCGTT
*
4912352 ACGAACTTGGACTATTGCA
1 ACGAACTTGGACTATCGCA
* *
4912371 ACGAATTTGGACAATCGCA
1 ACGAACTTGGACTATCGCA
*
4912390 ACGCGAACTTCGACTATCGCA
1 A--CGAACTTGGACTATCGCA
* **
4912411 ACGAATTTGGAAAATCGCA
1 ACGAACTTGGACTATCGCA
*
4912430 ACGCGAACTTGGATTATCG
1 A--CGAACTTGGACTATCG
4912449 AAAAATCACG
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
19 32 0.52
21 29 0.48
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (19 bp):
ACGAACTTGGACTATCGCA
Found at i:4912412 original size:40 final size:40
Alignment explanation
Indices: 4912353--4912448 Score: 156
Period size: 40 Copynumber: 2.4 Consensus size: 40
4912343 CCAGTCGTTA
* *
4912353 CGAACTTGGACTATTGCAACGAATTTGGACAATCGCAACG
1 CGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACG
*
4912393 CGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACG
1 CGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACG
*
4912433 CGAACTTGGATTATCG
1 CGAACTTGGACTATCG
4912449 AAAAATCACG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (40 bp):
CGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACG
Found at i:4912759 original size:18 final size:18
Alignment explanation
Indices: 4912736--4912776 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
4912726 GAGTATATTT
4912736 TATTTTTAAGTTAAAATA
1 TATTTTTAAGTTAAAATA
*
4912754 TATTTTTAAGTTAAGATA
1 TATTTTTAAGTTAAAATA
4912772 T-TTTT
1 TATTTT
4912777 AAAAGTTACG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (18 bp):
TATTTTTAAGTTAAAATA
Found at i:4912774 original size:16 final size:17
Alignment explanation
Indices: 4912736--4912778 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
4912726 GAGTATATTT
*
4912736 TATTTTTAAGTTAAAATA
1 TATTTTTAAGTT-AAAGA
4912754 TATTTTTAAGTT-AAGA
1 TATTTTTAAGTTAAAGA
4912770 TATTTTTAA
1 TATTTTTAA
4912779 AAGTTACGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 12 0.50
18 12 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (17 bp):
TATTTTTAAGTTAAAGA
Found at i:4912782 original size:18 final size:18
Alignment explanation
Indices: 4912736--4912784 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
4912726 GAGTATATTT
*
4912736 TATTTTTAAGTTAAAATA
1 TATTTTAAAGTTAAAATA
* *
4912754 TATTTTTAAGTTAAGATA
1 TATTTTAAAGTTAAAATA
4912772 T-TTTTAAAAGTTA
1 TATTTT-AAAGTTA
4912785 CGATCATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (18 bp):
TATTTTAAAGTTAAAATA
Found at i:4913160 original size:21 final size:21
Alignment explanation
Indices: 4913107--4913154 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
4913097 AATTATTCAA
4913107 AAAAATTAAA-TA-TCAAAAAT
1 AAAAATTAAATTACT-AAAAAT
4913127 AAAAATTAAATTACTAAAAATT
1 AAAAATTAAATTACTAAAAA-T
4913149 AAAAAT
1 AAAAAT
4913155 ATATTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.40
21 7 0.28
22 8 0.32
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAATTAAATTACTAAAAAT
Found at i:4913353 original size:14 final size:14
Alignment explanation
Indices: 4913334--4913363 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4913324 TTATAAATTC
4913334 TTATAAAAATAAAA
1 TTATAAAAATAAAA
*
4913348 TTATAAAATTAAAA
1 TTATAAAAATAAAA
4913362 TT
1 TT
4913364 TATGTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTATAAAAATAAAA
Found at i:4913887 original size:12 final size:12
Alignment explanation
Indices: 4913866--4913900 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4913856 CCAAATTAAT
*
4913866 TCATCTGTCATA
1 TCATCAGTCATA
4913878 TCATCAGTCATA
1 TCATCAGTCATA
*
4913890 TCATCAATCAT
1 TCATCAGTCAT
4913901 GTAACCATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (12 bp):
TCATCAGTCATA
Found at i:4930427 original size:32 final size:32
Alignment explanation
Indices: 4930386--4930448 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
4930376 TACTTTTTTT
4930386 TTACTGTTTCAAAAAAAAAGGTTCAACACCTA
1 TTACTGTTTCAAAAAAAAAGGTTCAACACCTA
4930418 TTACTGTTTCAAAAAAAAAGGTTCAACACCT
1 TTACTGTTTCAAAAAAAAAGGTTCAACACCT
4930449 TATACTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (32 bp):
TTACTGTTTCAAAAAAAAAGGTTCAACACCTA
Found at i:4931307 original size:19 final size:19
Alignment explanation
Indices: 4931283--4931319 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4931273 ATGACCAACA
*
4931283 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
4931302 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
4931320 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Done.