Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6671611
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 24 of 27
Found at i:5998484 original size:33 final size:33
Alignment explanation
Indices: 5998437--5998507 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
5998427 AATACTAACT
* *
5998437 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
5998470 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
5998503 TGAAA
1 TGAAA
5998508 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:5998741 original size:22 final size:22
Alignment explanation
Indices: 5998689--5998743 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
5998679 TGGTTGTGAG
**
5998689 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
5998711 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
5998733 GGATTTCTTCG
1 GGATTTCTTCG
5998744 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:5998909 original size:39 final size:40
Alignment explanation
Indices: 5998866--5998947 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
5998856 TACGCGTAGC
*
5998866 GATTATAATGGCGCTTTA-A-ATATCGCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGAT-TCGCGTTGCGATTTACG
** * *
5998905 GATTATCGTTGCGATTTACAGATTCTCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
5998945 GAT
1 GAT
5998948 ACGCGTTGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.39
40 20 0.56
41 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
Found at i:5999082 original size:20 final size:20
Alignment explanation
Indices: 5998889--5999081 Score: 210
Period size: 20 Copynumber: 9.7 Consensus size: 20
5998879 CTTTAAATAT
5998889 CGCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
* * *
5998910 -TCGTTGCGATTTACAGATT
1 CGCGTTGCGATTTACGGATA
*
5998929 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
5998949 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
5998969 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
*
5998989 CGCGTTGCGATTTACGAATA
1 CGCGTTGCGATTTACGGATA
*
5999009 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
5999029 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
5999049 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
5999069 CGCGTTGCGATTT
1 CGCGTTGCGATTT
5999082 TGGAAAATCG
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
19 1 0.01
20 144 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:5999098 original size:21 final size:21
Alignment explanation
Indices: 5999068--5999150 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
5999058 ATTTTCATAT
*
5999068 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
5999089 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
5999110 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
5999131 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
5999151 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:5999141 original size:42 final size:43
Alignment explanation
Indices: 5999048--5999146 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
5999038 ATTTATGTGT
* *
5999048 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
5999089 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
5999131 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
5999147 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:5999472 original size:3 final size:3
Alignment explanation
Indices: 5999464--5999532 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
5999454 ACTACAACAC
5999464 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5999512 ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
5999533 TTTCTCTATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6002087 original size:42 final size:42
Alignment explanation
Indices: 6002034--6002178 Score: 254
Period size: 42 Copynumber: 3.5 Consensus size: 42
6002024 CAACGTTGAA
* *
6002034 AAGAAGATCGCAACGCGATCTTCCAAGAATCGCAATGCGATT
1 AAGAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
* *
6002076 CATAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
1 AAGAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
6002118 AAGAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
1 AAGAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
6002160 AAGAAAATCGCAACGCGAT
1 AAGAAAATCGCAACGCGAT
6002179 TCAGTAATTC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 97 1.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (42 bp):
AAGAAAATCGCAACGCGATCTTCCAAGAATCGCAACGCGATT
Found at i:6002211 original size:84 final size:83
Alignment explanation
Indices: 6002040--6002220 Score: 242
Period size: 84 Copynumber: 2.2 Consensus size: 83
6002030 TGAAAAGAAG
* * *
6002040 ATCGCAACGCGATCTTCCAAGAATCGCAATGCGATTCATAAAATCGCAACGCGATCTTCCAAGAA
1 ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGA-CTTCCAAGAA
*
6002105 TCGCAACGCGATTAAGAAA
65 TCGCAACGCGATTAACAAA
6002124 ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGA-TT-C-AGTAA
1 ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGACTTCCAAG-AA
**
6002186 TTCGCAACGCGATCTTCCAAGA
65 -TCGCAACGCGAT-TAACAA-A
6002208 ATCGCAACGCGAT
1 ATCGCAACGCGAT
6002221 TCAGAAAATG
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
80 2 0.02
81 3 0.03
82 14 0.16
83 3 0.03
84 65 0.75
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (83 bp):
ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGACTTCCAAGAAT
CGCAACGCGATTAACAAA
Found at i:6002227 original size:62 final size:62
Alignment explanation
Indices: 6002081--6002229 Score: 219
Period size: 62 Copynumber: 2.4 Consensus size: 62
6002071 CGATTCATAA
*
6002081 AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAAAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGA--TT-CAGAAAATCGCAACGCGATTAAGAAAATCGCAACGCGATCTTCCAAG
* * * *
6002145 AATCGCAACGCGATTAAGAAAATCGCAACGCGATTCAGTAATTCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGATTAAGAAAATCGCAACGCGATCTTCCAAG
6002207 AATCGCAACGCGATTCAGAAAAT
1 AATCGCAACGCGATTCAGAAAAT
6002230 GAGTAAATTC
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
61 1 0.01
62 64 0.82
64 13 0.17
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (62 bp):
AATCGCAACGCGATTCAGAAAATCGCAACGCGATTAAGAAAATCGCAACGCGATCTTCCAAG
Found at i:6002336 original size:6 final size:6
Alignment explanation
Indices: 6002325--6002368 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
6002315 GACACGTATT
6002325 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
6002369 CGAGACGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:6002884 original size:6 final size:6
Alignment explanation
Indices: 6002868--6002947 Score: 153
Period size: 6 Copynumber: 13.5 Consensus size: 6
6002858 TCTCGTCTCG
6002868 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
6002915 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
6002948 AATGGTAATG
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 5 0.07
6 69 0.93
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:6002953 original size:6 final size:6
Alignment explanation
Indices: 6002944--6002968 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6002934 GTCGTGGTCG
6002944 TGGTAA TGGTAA TGGTAA TGGTAA T
1 TGGTAA TGGTAA TGGTAA TGGTAA T
6002969 ACGTGTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (6 bp):
TGGTAA
Found at i:6003098 original size:20 final size:20
Alignment explanation
Indices: 6003069--6003288 Score: 202
Period size: 20 Copynumber: 10.7 Consensus size: 20
6003059 TCATTTTCTT
6003069 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
*
6003089 AATCGTGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
6003109 AATCGCGTTGCGATTTTCTT--
1 AATCGCGTTGCGA--TTCTTGG
6003129 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
6003149 AAGATCGCGTTGCGATGT-TCT-G
1 -A-ATCGCGTTGCGAT-TCT-TGG
* *
6003171 AACCGCGTTGCGATT-TTCTG
1 AATCGCGTTGCGATTCTT-GG
* *
6003191 AATCGTGTTGCGATT-TTCTG
1 AATCGCGTTGCGATTCTT-GG
6003211 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
*
6003231 AAGATCGCGTTGCGATT-TTATG
1 -A-ATCGCGTTGCGATTCTT-GG
*
6003253 AATCGCATTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
*
6003273 AAGATCGTGTTGCGAT
1 -A-ATCGCGTTGCGAT
6003289 CTTCTTTTCA
Statistics
Matches: 171, Mismatches: 12, Indels: 32
0.80 0.06 0.15
Matches are distributed among these distances:
18 6 0.04
19 2 0.01
20 104 0.61
21 11 0.06
22 46 0.27
23 2 0.01
ACGTcount: A:0.17, C:0.18, G:0.28, T:0.37
Consensus pattern (20 bp):
AATCGCGTTGCGATTCTTGG
Found at i:6003157 original size:42 final size:42
Alignment explanation
Indices: 6003070--6003293 Score: 289
Period size: 42 Copynumber: 5.4 Consensus size: 42
6003060 CATTTTCTTA
* *
6003070 ATCGCGTTGCGATTCTT-GGAATCGTGTTGCGATTCTTGG-A-
1 ATCGCGTTGCGATT-TTCTGAATCGCGTTGCGATTCTTGGAAG
*
6003110 ATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
* * *
6003152 ATCGCGTTGCGATGTTCTGAACCGCGTTGCGATT-TTCTG-A-
1 ATCGCGTTGCGATTTTCTGAATCGCGTTGCGATTCTT-GGAAG
*
6003192 ATCGTGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
* *
6003234 ATCGCGTTGCGATTTTATGAATCGCATTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
* *
6003276 ATCGTGTTGCGATCTTCT
1 ATCGCGTTGCGATTTTCT
6003294 TTTCAACGTT
Statistics
Matches: 160, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.01
40 65 0.41
41 7 0.04
42 86 0.54
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (42 bp):
ATCGCGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
Found at i:6003195 original size:62 final size:61
Alignment explanation
Indices: 6003061--6003349 Score: 274
Period size: 62 Copynumber: 4.7 Consensus size: 61
6003051 GAATTTACTC
* * *
6003061 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGTGTTGCGA-TTCTTGGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTTCTTGGAACCGCGTTGCG
*
6003121 ATTTTCTTAATCGCGTTGCGATTCTTGGAAGATCGCGTTGCGATGTTC-T-GAACCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGG-A-ATCGCGTTGCGAT-TTCTTGGAACCGCGTTGCG
* * *
6003183 ATTTTCTGAATCGTGTTGCGATT-TTCTGAATCGCGTTGCGA-TTCTTGGAAGATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTT-GGAATCGCGTTGCGATTTCTTGG-A-ACCGCGTTGCG
* * * **
6003245 ATTTTATGAATCGCATTGCGATTCTTGGAAGATCGTGTTGCGATCTTCTTTTCAA---CGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGG-A-ATCGCGTTGCGAT-TTC-TTGGAACCGCGTTGCG
* * *
6003307 CTTTTCTAAATCGCGTTGCGGTT-TT-GATATCGCGTTGCGATTT
1 ATTTTCTGAATCGCGTTGCGATTCTTGGA-ATCGCGTTGCGATTT
6003350 TGTTGGTCAT
Statistics
Matches: 194, Mismatches: 20, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
58 5 0.03
59 14 0.07
60 42 0.22
61 7 0.04
62 101 0.52
63 4 0.02
64 14 0.07
65 1 0.01
66 4 0.02
67 2 0.01
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.39
Consensus pattern (61 bp):
ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTTCTTGGAACCGCGTTGCG
Found at i:6003207 original size:82 final size:81
Alignment explanation
Indices: 6003070--6003348 Score: 309
Period size: 82 Copynumber: 3.4 Consensus size: 81
6003060 CATTTTCTTA
* *
6003070 ATCGCGTTGCGA-TTCTTGGAATCGTGTTGCGATTCTTGGAATCGCGTTGCGATTTTCTTAATCG
1 ATCGCGTTGCGATTTC-T-GAATCGCGTTGCGATTCTTGGAATCGTGTTGCGATTTTCTTAATCG
6003134 CGTTGCGATTCTTGGAAG
64 CGTTGCGATTCTTGGAAG
* * *
6003152 ATCGCGTTGCGATGTTCTGAACCGCGTTGCGATT-TTCTGAATCGTGTTGCGATTTTCTGAATCG
1 ATCGCGTTGCGAT-TTCTGAATCGCGTTGCGATTCTT-GGAATCGTGTTGCGATTTTCTTAATCG
6003216 CGTTGCGATTCTTGGAAG
64 CGTTGCGATTCTTGGAAG
* * * *
6003234 ATCGCGTTGCGATTTTATGAATCGCATTGCGATTCTTGGAAGATCGTGTTGCGATCTTCTT-TTC
1 ATCGCGTTGCGA-TTTCTGAATCGCGTTGCGATTCTTGG-A-ATCGTGTTGCGATTTTCTTAATC
* * **
6003298 AACGTTGCGCTT-TTCTAA-
63 -GCGTTGCGATTCTTGGAAG
*
6003316 ATCGCGTTGCGGTTT-TGATATCGCGTTGCGATT
1 ATCGCGTTGCGATTTCTGA-ATCGCGTTGCGATT
6003349 TTGTTGGTCA
Statistics
Matches: 170, Mismatches: 18, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
80 3 0.02
81 18 0.11
82 109 0.64
83 11 0.06
84 29 0.17
ACGTcount: A:0.16, C:0.19, G:0.27, T:0.38
Consensus pattern (81 bp):
ATCGCGTTGCGATTTCTGAATCGCGTTGCGATTCTTGGAATCGTGTTGCGATTTTCTTAATCGCG
TTGCGATTCTTGGAAG
Found at i:6003306 original size:42 final size:41
Alignment explanation
Indices: 6003070--6003348 Score: 239
Period size: 42 Copynumber: 6.8 Consensus size: 41
6003060 CATTTTCTTA
*** *
6003070 ATCGCGTTGCGATTCTTGGAATCGTGTTGCGATTCTTGG-A-
1 ATCGCGTTGCGATT-TTCTTATCGCGTTGCGATTCTTGGAAG
6003110 ATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCTT-ATCGCGTTGCGATTCTTGGAAG
* * * *
6003152 ATCGCGTTGCGATGTTCTGAACCGCGTTGCGATT-TTCTG-A-
1 ATCGCGTTGCGATTTTCT-TATCGCGTTGCGATTCTT-GGAAG
* *
6003192 ATCGTGTTGCGATTTTCTGAATCGCGTTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCT-TATCGCGTTGCGATTCTTGGAAG
* * *
6003234 ATCGCGTTGCGATTTTATGAATCGCATTGCGATTCTTGGAAG
1 ATCGCGTTGCGATTTTCT-TATCGCGTTGCGATTCTTGGAAG
* * * * * **
6003276 ATCGTGTTGCGATCTTCTTTTCAACGTTGCGCTT-TTCTAA-
1 ATCGCGTTGCGATTTTCTTATC-GCGTTGCGATTCTTGGAAG
* **
6003316 ATCGCGTTGCGGTTTTGATATCGCGTTGCGATT
1 ATCGCGTTGCGATTTTCTTATCGCGTTGCGATT
6003349 TTGTTGGTCA
Statistics
Matches: 197, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
39 11 0.06
40 80 0.41
41 13 0.07
42 93 0.47
ACGTcount: A:0.16, C:0.19, G:0.27, T:0.38
Consensus pattern (41 bp):
ATCGCGTTGCGATTTTCTTATCGCGTTGCGATTCTTGGAAG
Found at i:6003323 original size:20 final size:20
Alignment explanation
Indices: 6003061--6003350 Score: 192
Period size: 20 Copynumber: 14.2 Consensus size: 20
6003051 GAATTTACTC
*
6003061 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
** *
6003081 ATTCTT-GGAATCGTGTTGCG
1 ATT-TTCTAAATCGCGTTGCG
**
6003101 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTAAATCGCGTTGCG
*
6003121 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
**
6003141 ATTCTTGGAAGATCGCGTTGCG
1 ATT-TTCTAA-ATCGCGTTGCG
* * *
6003163 ATGTTCTGAACCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
* *
6003183 ATTTTCTGAATCGTGTTGCG
1 ATTTTCTAAATCGCGTTGCG
*
6003203 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
**
6003223 ATTCTTGGAAGATCGCGTTGCG
1 ATT-TTCTAA-ATCGCGTTGCG
* * *
6003245 ATTTTATGAATCGCATTGCG
1 ATTTTCTAAATCGCGTTGCG
** *
6003265 ATTCTTGGAAGATCGTGTTGCG
1 ATT-TTCTAA-ATCGCGTTGCG
* ** *
6003287 ATCTTCT-TTTCAACGTTGCG
1 ATTTTCTAAATC-GCGTTGCG
*
6003307 CTTTTCTAAATCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
* * *
6003327 GTTTT-GATATCGCGTTGCG
1 ATTTTCTAAATCGCGTTGCG
6003346 ATTTT
1 ATTTT
6003351 GTTGGTCATT
Statistics
Matches: 214, Mismatches: 46, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
19 20 0.09
20 135 0.63
21 21 0.10
22 38 0.18
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.40
Consensus pattern (20 bp):
ATTTTCTAAATCGCGTTGCG
Found at i:6003583 original size:18 final size:20
Alignment explanation
Indices: 6003548--6003586 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
6003538 TTAATTTATG
*
6003548 TTATATAATTTTTATTATAT
1 TTATATAATTTATATTATAT
6003568 TTATA-AATTTAT-TTATAT
1 TTATATAATTTATATTATAT
6003586 T
1 T
6003587 ATGTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATATAATTTATATTATAT
Found at i:6007143 original size:31 final size:31
Alignment explanation
Indices: 6007099--6007241 Score: 177
Period size: 31 Copynumber: 4.7 Consensus size: 31
6007089 AACATTTTTT
* *
6007099 TAATATATCCGGTCATTTTTTTAACGCCTAA
1 TAATATTTTCGGTCATTTTTTTAACGCCTAA
* * *
6007130 TAATGTTTTCGGTCA-TTTTTTAGCGACTAA
1 TAATATTTTCGGTCATTTTTTTAACGCCTAA
*
6007160 TAATATTTTCGGTCA--TTTTTAGCG-CTAA
1 TAATATTTTCGGTCATTTTTTTAACGCCTAA
*
6007188 TAATATTTTCGGTCATTTTTTTAACACCTAA
1 TAATATTTTCGGTCATTTTTTTAACGCCTAA
* *
6007219 TAATGTTTCCGGTCATTTTTTTA
1 TAATATTTTCGGTCATTTTTTTA
6007242 TCGATTTTAT
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
28 19 0.19
29 9 0.09
30 34 0.34
31 37 0.37
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (31 bp):
TAATATTTTCGGTCATTTTTTTAACGCCTAA
Found at i:6007151 original size:30 final size:30
Alignment explanation
Indices: 6007099--6007239 Score: 169
Period size: 30 Copynumber: 4.7 Consensus size: 30
6007089 AACATTTTTT
* *
6007099 TAATATATCCGGTCATTTTTTTAACGCCTAA
1 TAATATTTTCGGTCA-TTTTTTAACGCCTAA
* * *
6007130 TAATGTTTTCGGTCATTTTTTAGCGACTAA
1 TAATATTTTCGGTCATTTTTTAACGCCTAA
*
6007160 TAATATTTTCGGTCA-TTTTTAGCG-CTAA
1 TAATATTTTCGGTCATTTTTTAACGCCTAA
*
6007188 TAATATTTTCGGTCATTTTTTTAACACCTAA
1 TAATATTTTCGGTCA-TTTTTTAACGCCTAA
* *
6007219 TAATGTTTCCGGTCATTTTTT
1 TAATATTTTCGGTCATTTTTT
6007240 TATCGATTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
28 19 0.20
29 9 0.09
30 40 0.41
31 29 0.30
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.48
Consensus pattern (30 bp):
TAATATTTTCGGTCATTTTTTAACGCCTAA
Found at i:6007220 original size:59 final size:59
Alignment explanation
Indices: 6007099--6007238 Score: 176
Period size: 59 Copynumber: 2.3 Consensus size: 59
6007089 AACATTTTTT
* * *
6007099 TAATATATCCGGTCATTTTTTTAACGCCTAATAATGTTTTCGGTCATTTTTTAGCGACTAA
1 TAATATTTCCGGTCA--TTTTTAACGCCTAATAATATTTTCGGTCATTTTTTAACGACTAA
* *
6007160 TAATATTTTCGGTCATTTTTAGCG-CTAATAATATTTTCGGTCATTTTTTTAAC-ACCTAA
1 TAATATTTCCGGTCATTTTTAACGCCTAATAATATTTTCGGTCA-TTTTTTAACGA-CTAA
*
6007219 TAATGTTTCCGGTCATTTTT
1 TAATATTTCCGGTCATTTTT
6007239 TTATCGATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
58 19 0.27
59 38 0.54
61 13 0.19
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (59 bp):
TAATATTTCCGGTCATTTTTAACGCCTAATAATATTTTCGGTCATTTTTTAACGACTAA
Found at i:6010765 original size:228 final size:229
Alignment explanation
Indices: 6010368--6010862 Score: 922
Period size: 229 Copynumber: 2.2 Consensus size: 229
6010358 GTTATATTGT
* * *
6010368 AAAGTATTTATCATTTTTATAAAAGTGTCCATACTTATTTCATTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
*
6010433 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
6010498 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-A
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
6010562 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
6010596 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
*
6010661 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
6010725 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
130 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
6010790 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
6010825 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
6010863 AAAAGTAGGT
Statistics
Matches: 260, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
228 117 0.45
229 143 0.55
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:6011143 original size:20 final size:19
Alignment explanation
Indices: 6011120--6011166 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
6011110 CGATATACCA
6011120 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
6011140 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
6011160 GGTAAAA
1 GGTAAAA
6011167 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:6011284 original size:181 final size:182
Alignment explanation
Indices: 6010917--6011380 Score: 680
Period size: 181 Copynumber: 2.6 Consensus size: 182
6010907 CCGGTTCGTG
* * * *
6010917 TCGATTCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGATAAAACCGGT
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGATAAAACCGGT
* * * * *
6010981 AAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTT
65 AAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTT
* * * *
6011046 AAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTAAAAAATGTA
130 AAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
*
6011099 TCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
* * *
6011164 AAACGTTACCGGATATATTGAAAGTATCGATACTTT-ATATAAGGATCGACACTTTGTGAATTTA
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
** *
6011228 AAAGAGAAGCAATTTTAGCGCCTATAATGTGTCGATACTTTAAAAAAATATA
131 AAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
* * * *
6011280 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCAGTATCAAAATGATACAACCGGTA
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
*
6011345 AAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTT
6011381 CGTAAGTACG
Statistics
Matches: 254, Mismatches: 27, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
181 166 0.65
182 88 0.35
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
AAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
Found at i:6013592 original size:21 final size:21
Alignment explanation
Indices: 6013568--6013611 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6013558 AAGACAATCA
6013568 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
6013589 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
6013610 AG
1 AG
6013612 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:6013687 original size:33 final size:33
Alignment explanation
Indices: 6013645--6013710 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
6013635 AAATAGATGG
*
6013645 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
6013678 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
6013711 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:6015522 original size:19 final size:19
Alignment explanation
Indices: 6015498--6015546 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
6015488 AATGTAGGGT
6015498 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
6015517 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
6015536 TATTTTTGTAT
1 TAATTTTGTAT
6015547 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:6015846 original size:19 final size:20
Alignment explanation
Indices: 6015811--6015848 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6015801 GTCTAAATAA
6015811 TGTGTCGACACTTTTTAGTT
1 TGTGTCGACACTTTTTAGTT
*
6015831 TGTGTCGATA-TTTTTAGT
1 TGTGTCGACACTTTTTAGT
6015849 CCAGAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.16, C:0.11, G:0.21, T:0.53
Consensus pattern (20 bp):
TGTGTCGACACTTTTTAGTT
Found at i:6016305 original size:200 final size:198
Alignment explanation
Indices: 6015665--6016637 Score: 1759
Period size: 199 Copynumber: 4.9 Consensus size: 198
6015655 CAATATGGCC
* *
6015665 AACAGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAATGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
6015730 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
6015795 GAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTAG-TCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTT-GTTCCAGAATGAA
6015859 TGGAA
194 TGGAA
*
6015864 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
*
6015929 CCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
6015994 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
6016059 TGGAA
194 TGGAA
* *
6016064 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTTGATCCCAAAAACATTGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
6016129 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
6016194 AATATGTCTAAATAATATGTCGACACTTTTATAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTTTT-TAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
6016259 GGAA
195 GGAA
6016263 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAAACATCGAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACATCGAAC
* *
6016328 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGATATAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
6016393 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTATTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
*
6016458 TAGAA
194 TGGAA
6016463 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
6016528 CAAAAGTGTAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
6016593 AATATGTCTAAATAATGTGTCGACACTTATTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
6016638 CTAATTTAAA
Statistics
Matches: 749, Mismatches: 20, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
198 22 0.03
199 437 0.58
200 286 0.38
201 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAATG
GAA
Found at i:6016403 original size:399 final size:398
Alignment explanation
Indices: 6015665--6016637 Score: 1779
Period size: 399 Copynumber: 2.4 Consensus size: 398
6015655 CAATATGGCC
* *
6015665 AACAGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAATGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
6015730 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
6015795 GAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTAGTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTAGTCCAGAATGAAT
6015860 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
195 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
*
6015925 AAAACCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
260 AAAACCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTAT
*
6015990 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGTTCCAGAA
325 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTATTCCAGAA
*
6016055 TGAATGGAA
390 TGAATAGAA
* *
6016064 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTTGATCCCAAAAACATTGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
6016129 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
6016194 AATATGTCTAAATAATATGTCGACACTTTTATAGTTTGTGTCGATATTTTT-GTTCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACACTTTT-TAGTTTGTGTCGATATTTTTAG-TCCAGAATGAA
6016258 TGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAAACAT
194 TGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACAT
* * *
6016323 CG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGATATAAGTATACCGGTTTT
258 CGAAAACCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGATACAAGTATACCGGTTTT
6016387 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTATTCCAG
323 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTATTCCAG
6016452 AATGAATAGAA
388 AATGAATAGAA
6016463 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
6016528 CAAAAGTGTAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
6016593 AATATGTCTAAATAATGTGTCGACACTTATTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
6016638 CTAATTTAAA
Statistics
Matches: 555, Mismatches: 16, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
398 114 0.21
399 415 0.75
400 26 0.05
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (398 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTAGTCCAGAATGAATG
GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
AAACCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATG
AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTATTCCAGAAT
GAATAGAA
Found at i:6018112 original size:6 final size:6
Alignment explanation
Indices: 6018101--6018194 Score: 89
Period size: 6 Copynumber: 15.7 Consensus size: 6
6018091 CAAGCGGTCA
* * * * *
6018101 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * * *
6018149 CTGACG ATGAAG ATGATG ATGACG ATGATG ATGATG ATGAAG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
6018195 TGATCCAAAC
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 72 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:6018198 original size:12 final size:12
Alignment explanation
Indices: 6018101--6018194 Score: 107
Period size: 12 Copynumber: 7.8 Consensus size: 12
6018091 CAAGCGGTCA
*
6018101 ATGAAGATGAAG
1 ATGACGATGAAG
*
6018113 CTGACGATGAAG
1 ATGACGATGAAG
*
6018125 ATGACGATGATG
1 ATGACGATGAAG
6018137 ATGACGATGAAG
1 ATGACGATGAAG
*
6018149 CTGACGATGAAG
1 ATGACGATGAAG
* *
6018161 ATGATGATGACG
1 ATGACGATGAAG
* *
6018173 ATGATGATGATG
1 ATGACGATGAAG
*
6018185 ATGAAGATGA
1 ATGACGATGA
6018195 TGATCCAAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 71 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.21
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:6018198 original size:18 final size:18
Alignment explanation
Indices: 6018101--6018194 Score: 107
Period size: 18 Copynumber: 5.2 Consensus size: 18
6018091 CAAGCGGTCA
*
6018101 ATGAAGATGAAGCTGACG
1 ATGAAGATGAAGATGACG
* *
6018119 ATGAAGATGACGATGATG
1 ATGAAGATGAAGATGACG
* *
6018137 ATGACGATGAAGCTGACG
1 ATGAAGATGAAGATGACG
*
6018155 ATGAAGATGATGATGACG
1 ATGAAGATGAAGATGACG
* * *
6018173 ATGATGATGATGATGAAG
1 ATGAAGATGAAGATGACG
6018191 ATGA
1 ATGA
6018195 TGATCCAAAC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.21
Consensus pattern (18 bp):
ATGAAGATGAAGATGACG
Found at i:6019414 original size:16 final size:16
Alignment explanation
Indices: 6019393--6019426 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6019383 CCACAACAAA
* *
6019393 GTGTCGATTTAAAAAT
1 GTGTCGACTGAAAAAT
6019409 GTGTCGACTGAAAAAT
1 GTGTCGACTGAAAAAT
6019425 GT
1 GT
6019427 AACAGACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (16 bp):
GTGTCGACTGAAAAAT
Found at i:6019816 original size:23 final size:23
Alignment explanation
Indices: 6019785--6019857 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
6019775 ATAGGTAAAA
*
6019785 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6019808 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6019831 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6019854 ATAT
1 ATAT
6019858 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6019882 original size:46 final size:45
Alignment explanation
Indices: 6019785--6019882 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
6019775 ATAGGTAAAA
* *
6019785 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTATCGTTT
* * *
6019831 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATCTATCTTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTATCGTTT
*
6019877 TTATAA
1 ATATAA
6019883 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTATCGTTT
Found at i:6020515 original size:183 final size:183
Alignment explanation
Indices: 6020235--6020727 Score: 898
Period size: 183 Copynumber: 2.7 Consensus size: 183
6020225 GCAATGCTAT
* *
6020235 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
* *
6020300 GTGTCGGTATTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTTAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCGAC
*
6020364 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
*
6020418 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGATACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
*
6020483 GTGTCGGTACTTTATGTCCAGATTGAAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
*
6020548 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
6020601 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
6020666 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
6020728 GTAATTTTAA
Statistics
Matches: 299, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
183 295 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:6022733 original size:23 final size:23
Alignment explanation
Indices: 6022702--6022774 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
6022692 ATAGGTAAAA
*
6022702 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6022725 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6022748 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6022771 ATAT
1 ATAT
6022775 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6022799 original size:46 final size:45
Alignment explanation
Indices: 6022702--6022799 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
6022692 ATAGGTAAAA
* *
6022702 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTATCGTTT
* * *
6022748 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATCTATCTTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTATCGTTT
*
6022794 TTATAA
1 ATATAA
6022800 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTATCGTTT
Found at i:6023430 original size:183 final size:183
Alignment explanation
Indices: 6023155--6023645 Score: 903
Period size: 183 Copynumber: 2.7 Consensus size: 183
6023145 GCAATGCTAT
* *
6023155 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
*
6023220 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTCAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCGAC
*
6023284 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
*
6023338 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGATACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
6023403 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
*
6023468 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
*
6023521 CGGTATAAATATACCGATTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
6023586 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGT
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGT
6023646 AGGTAATTTT
Statistics
Matches: 299, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
183 295 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:6025268 original size:16 final size:16
Alignment explanation
Indices: 6025247--6025280 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6025237 CCACAACAAA
* *
6025247 GTGTCGATTTAAAAAT
1 GTGTCGACTGAAAAAT
6025263 GTGTCGACTGAAAAAT
1 GTGTCGACTGAAAAAT
6025279 GT
1 GT
6025281 AACAGACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (16 bp):
GTGTCGACTGAAAAAT
Found at i:6025671 original size:23 final size:23
Alignment explanation
Indices: 6025640--6025712 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6025630 ATAGGTAAAA
* *
6025640 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
* *
6025663 ATATAATGTAATAGGTATTGTTT
1 ATATAATGTAATAGGTAGTGCTT
*
6025686 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
6025709 ATAT
1 ATAT
6025713 TGTAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:6026053 original size:22 final size:22
Alignment explanation
Indices: 6026009--6026053 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6025999 ATTACATATC
*
6026009 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACCTT
*
6026031 TTTATAAAAAGTAT-GAACACTT
1 TTTAAAAAAAGTATCGAAC-CTT
6026053 T
1 T
6026054 CAACATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACCTT
Found at i:6026368 original size:183 final size:183
Alignment explanation
Indices: 6026091--6026583 Score: 907
Period size: 183 Copynumber: 2.7 Consensus size: 183
6026081 TTGCAATGCT
* *
6026091 ATCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATA
1 ATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATA
*
6026156 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTCAAAAAGTGTCG
66 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCG
*
6026220 ACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATA
130 ACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATA
*
6026274 ATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGATACTTTCTAATA
1 ATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATA
6026339 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGA
66 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGA
*
6026404 CATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATA
131 CATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATA
*
6026457 ACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATA
1 ATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATA
6026522 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGT
66 TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGT
6026584 TGGTAATTTT
Statistics
Matches: 301, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
183 297 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATA
TTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGA
CATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATA
Found at i:6028215 original size:16 final size:16
Alignment explanation
Indices: 6028183--6028216 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6028173 TATCCACAAC
* *
6028183 AAAGTGTCGATTTAAA
1 AAAGTGTCGACTGAAA
6028199 AAAGTGTCGACTGAAA
1 AAAGTGTCGACTGAAA
6028215 AA
1 AA
6028217 TGTAACAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (16 bp):
AAAGTGTCGACTGAAA
Found at i:6028608 original size:23 final size:23
Alignment explanation
Indices: 6028577--6028649 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6028567 ATAGGTAAAA
*
6028577 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6028600 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6028623 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6028646 ATAT
1 ATAT
6028650 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6029304 original size:183 final size:183
Alignment explanation
Indices: 6029029--6029517 Score: 890
Period size: 183 Copynumber: 2.7 Consensus size: 183
6029019 GCAATGCTAT
* * *
6029029 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTATAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
*
6029094 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTCAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCGAC
*
6029158 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTATAATATAAC
130 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
*
6029212 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGATACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
6029277 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
* *
6029342 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
6029395 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
6029460 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGT
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGT
6029518 ATAGGTAATT
Statistics
Matches: 296, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
183 292 0.99
184 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
Found at i:6032353 original size:22 final size:22
Alignment explanation
Indices: 6032308--6032353 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
6032298 ATTACATAAC
*
6032308 TTTTAAAAAAAGTATCGATCCT
1 TTTTAAAAAAAGTATCGAACCT
*
6032330 TTTTATAAAAAGTAT-GAACACT
1 TTTTAAAAAAAGTATCGAAC-CT
6032352 TT
1 TT
6032354 CAATATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (22 bp):
TTTTAAAAAAAGTATCGAACCT
Found at i:6032402 original size:23 final size:23
Alignment explanation
Indices: 6032371--6032443 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6032361 ATAGGTAAAA
*
6032371 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6032394 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6032417 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6032440 ATAT
1 ATAT
6032444 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6032832 original size:23 final size:23
Alignment explanation
Indices: 6032801--6032873 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6032791 ATAGGTAAAA
*
6032801 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6032824 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6032847 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6032870 ATAT
1 ATAT
6032874 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6032965 original size:430 final size:430
Alignment explanation
Indices: 6032168--6033466 Score: 2395
Period size: 431 Copynumber: 3.0 Consensus size: 430
6032158 GTTAATGTTG
*
6032168 TTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAA
1 TTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAA
*
6032233 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTGTT-AAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
* *
6032297 AATTACATAACTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAATATAA
131 AATTACATAAC-TTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGAACACTTTCAATATAA
6032362 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
195 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
6032427 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
260 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
6032492 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
325 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
6032557 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTG
390 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
6032598 TTAAATTTAAATTCTATATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAA
1 TTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAA
6032663 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
*
6032728 AATTACATAACTTTAAAAGAAGTATCGATCTTTTTTATAAAAAGTATGAACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGAACACTTTCAATATAAT
6032793 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
*
6032858 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
6032923 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
*
6032988 GTTTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
* *
6033028 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATT-TAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
*
6033093 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAAATTGAAACAT
65 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
6033158 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTAT-AGACACTTTCAATATA
130 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGA-ACACTTTCAATATA
* *
6033222 ATATGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGT
194 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
* * *
6033287 AATAGGTAGTGCTTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
259 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACT
6033352 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
324 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
6033417 GCGTCTAATGATTTATTTTTTTACGTTACGATATATATTATTA
389 GCGTCTAATGATTTA-TTTTTTACGTTACGATATATATTATTA
6033460 TTAAATT
1 TTAAATT
6033467 AAAAACAATA
Statistics
Matches: 845, Mismatches: 20, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
430 401 0.47
431 410 0.49
432 34 0.04
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (430 bp):
TTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAA
TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
AATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGAACACTTTCAATATAAT
AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:6033263 original size:23 final size:23
Alignment explanation
Indices: 6033232--6033304 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
6033222 ATATGTAAAA
*
6033232 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
6033255 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
6033278 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
6033301 ATAT
1 ATAT
6033305 TGTAAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6040636 original size:16 final size:16
Alignment explanation
Indices: 6040609--6040673 Score: 94
Period size: 16 Copynumber: 4.1 Consensus size: 16
6040599 TAATAAATAA
* *
6040609 ACGAATATAAACAAAC
1 ACGAACATAAACGAAC
*
6040625 ATGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
6040641 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
6040657 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
6040673 A
1 A
6040674 TAATTAAAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.58, C:0.20, G:0.11, T:0.11
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:6040961 original size:16 final size:16
Alignment explanation
Indices: 6040936--6041000 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
6040926 TAATAAATAA
*
6040936 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
6040952 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
6040968 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
6040984 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
6041000 A
1 A
6041001 TAAACGTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.57, C:0.22, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:6040965 original size:10 final size:10
Alignment explanation
Indices: 6040932--6041006 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
6040922 CATTTAATAA
*
6040932 ATAAACGAAT
1 ATAAACGAAC
6040942 ATAAACGAAC
1 ATAAACGAAC
6040952 ----ACGAAC
1 ATAAACGAAC
6040958 ATAAACGAAC
1 ATAAACGAAC
** *
6040968 ACGAAC-ATAA
1 ATAAACGA-AC
6040978 ATGAACACGAAC
1 AT-AA-ACGAAC
6040990 ATAAACGAAC
1 ATAAACGAAC
6041000 ATAAACG
1 ATAAACG
6041007 TTGGAAACCC
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
6 6 0.12
9 1 0.02
10 34 0.68
11 3 0.06
12 5 0.10
13 1 0.02
ACGTcount: A:0.57, C:0.20, G:0.12, T:0.11
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:6041015 original size:326 final size:325
Alignment explanation
Indices: 6040352--6041003 Score: 1223
Period size: 326 Copynumber: 2.0 Consensus size: 325
6040342 TTTTTTTAAT
6040352 TAAAAGGAAACCATTACAATAAAATACTAAGTGCGAATAAAAGCAGGACCATGAAGGTCATAATC
1 TAAAAGGAAACCATTACAATAAAATACTAAGTGCGAATAAAAGCAGGACCATGAAGGTCATAATC
6040417 AATATGAGGTATTATCTCCTGGGGAGGTTCAATTAGGGTTGTAAACGAACCGAACGCACACGAAC
66 AATATGAGGTATTATCTCCTGGGGAGGTTCAATTAGGGTTGTAAACGAACCGAACGCACACGAAC
*
6040482 GGAGGTATGTTCATGTTAATAAATAAACAAACATAAACGAACACGAACATAAACAAATAAATTTT
131 GAAGGTATGTTCATGTTAATAAATAAACAAACATAAACGAACACGAACATAAACAAATAAATTTT
6040547 TTTTGTTCATGTTCGTTTATTAAGGAATATAACTTGTTCATGTTCGTTCATTTAATAAATAAACG
196 TTTTGTTCATGTTCGTTTATTAAGGAATATAACTTGTTCATGTTCGTTCATTTAATAAATAAACG
*
6040612 AATATAAACAAACATGAACATAAACGAACACGAACATAAATGAACACGAACATAAACGAACATAA
261 AATATAAACAAACACGAACATAAACGAACACGAACATAAATGAACACGAACATAAACGAACATAA
*
6040677 TTAAAAGGAAACCATTACAATGAAATACTAAGTGCGAATAAAAGCAGGACCATGAAGGTCATAAT
1 -TAAAAGGAAACCATTACAATAAAATACTAAGTGCGAATAAAAGCAGGACCATGAAGGTCATAAT
6040742 CAATATGAGGTATTATCTCCTGGGGAGGTTCAATTAGGGTTGTAAACGAACCGAACGCACACGAA
65 CAATATGAGGTATTATCTCCTGGGGAGGTTCAATTAGGGTTGTAAACGAACCGAACGCACACGAA
* * *
6040807 CGAATGTATGTTCATGTTAATAAATAAACGAACATAAACGAACACGAACATAAGCAAATAAATTT
130 CGAAGGTATGTTCATGTTAATAAATAAACAAACATAAACGAACACGAACATAAACAAATAAA-TT
6040872 TTTTTTGTTCATGTTCGTTTATTAAGGAATATAACTTGTTCATGTTCGTTCATTTAATAAATAAA
194 TTTTTTGTTCATGTTCGTTTATTAAGGAATATAACTTGTTCATGTTCGTTCATTTAATAAATAAA
*
6040937 CGAATATAAACGAACACGAACATAAACGAACACGAACATAAATGAACACGAACATAAACGAACAT
259 CGAATATAAACAAACACGAACATAAACGAACACGAACATAAATGAACACGAACATAAACGAACAT
6041002 AA
324 AA
6041004 ACGTTGGAAA
Statistics
Matches: 318, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
326 186 0.58
327 132 0.42
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (325 bp):
TAAAAGGAAACCATTACAATAAAATACTAAGTGCGAATAAAAGCAGGACCATGAAGGTCATAATC
AATATGAGGTATTATCTCCTGGGGAGGTTCAATTAGGGTTGTAAACGAACCGAACGCACACGAAC
GAAGGTATGTTCATGTTAATAAATAAACAAACATAAACGAACACGAACATAAACAAATAAATTTT
TTTTGTTCATGTTCGTTTATTAAGGAATATAACTTGTTCATGTTCGTTCATTTAATAAATAAACG
AATATAAACAAACACGAACATAAACGAACACGAACATAAATGAACACGAACATAAACGAACATAA
Found at i:6042115 original size:24 final size:24
Alignment explanation
Indices: 6042074--6042121 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6042064 AGATTGAGTT
* *
6042074 AAACATAAATGAATGAACATAACC
1 AAACATAAACGAACGAACATAACC
*
6042098 AAACATAACCGAACGAACATAACC
1 AAACATAAACGAACGAACATAACC
6042122 GAACGTTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.56, C:0.23, G:0.08, T:0.12
Consensus pattern (24 bp):
AAACATAAACGAACGAACATAACC
Found at i:6042118 original size:14 final size:14
Alignment explanation
Indices: 6042099--6042126 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6042089 AACATAACCA
6042099 AACATAACCGAACG
1 AACATAACCGAACG
6042113 AACATAACCGAACG
1 AACATAACCGAACG
6042127 TTCATGAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.29, G:0.14, T:0.07
Consensus pattern (14 bp):
AACATAACCGAACG
Found at i:6045641 original size:26 final size:23
Alignment explanation
Indices: 6045610--6045671 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
6045600 AATAATATGA
*
6045610 TTATTATATAATATTTTAAATTATTT
1 TTATTATATAA-A-TATAAA-TATTT
6045636 TTATTAT-TAAATATAAATATTT
1 TTATTATATAAATATAAATATTT
*
6045658 TATATTATAAAAAT
1 T-TATTATATAAAT
6045672 TAGAGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 11 0.34
24 5 0.16
25 3 0.09
26 7 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTATTATATAAATATAAATATTT
Found at i:6046046 original size:86 final size:86
Alignment explanation
Indices: 6045901--6046074 Score: 321
Period size: 86 Copynumber: 2.0 Consensus size: 86
6045891 AGTGGGATCA
**
6045901 AAACGATATAGTTTTGGTGATGTGTCTACAATGGCAACCATTAGACGCGTCATCGTGCCATTAAC
1 AAACGATATAGTTTTGGTGATGTGTCTACAATGGCAACCATTAGACAAGTCATCGTGCCATTAAC
6045966 GATTTAATAGTTCAATGATAT
66 GATTTAATAGTTCAATGATAT
*
6045987 AAACGATATCGTTTTGGTGATGTGTCTACAATGGCAACCATTAGACAAGTCATCGTGCCATTAAC
1 AAACGATATAGTTTTGGTGATGTGTCTACAATGGCAACCATTAGACAAGTCATCGTGCCATTAAC
6046052 GATTTAATAGTTCAATGATAT
66 GATTTAATAGTTCAATGATAT
6046073 AA
1 AA
6046075 TTGAAACGAA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (86 bp):
AAACGATATAGTTTTGGTGATGTGTCTACAATGGCAACCATTAGACAAGTCATCGTGCCATTAAC
GATTTAATAGTTCAATGATAT
Found at i:6059467 original size:2 final size:2
Alignment explanation
Indices: 6059460--6059487 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6059450 GCAGTTCATA
6059460 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6059488 CAGTGCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6063384 original size:28 final size:28
Alignment explanation
Indices: 6063344--6063404 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
6063334 TGCATGTATG
*
6063344 AGGTTGTTAGTATGTTGTTAGCTTCCAT
1 AGGTTATTAGTATGTTGTTAGCTTCCAT
*
6063372 AGGTTATTCGTATGTTGTTAGCTTCCAT
1 AGGTTATTAGTATGTTGTTAGCTTCCAT
6063400 AGGTT
1 AGGTT
6063405 GTTCAGGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.46
Consensus pattern (28 bp):
AGGTTATTAGTATGTTGTTAGCTTCCAT
Found at i:6065738 original size:14 final size:14
Alignment explanation
Indices: 6065719--6065747 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6065709 ACCCATTTTG
6065719 CAAAGTTTCTTAAA
1 CAAAGTTTCTTAAA
6065733 CAAAGTTTCTTAAA
1 CAAAGTTTCTTAAA
6065747 C
1 C
6065748 CGATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (14 bp):
CAAAGTTTCTTAAA
Found at i:6066949 original size:13 final size:13
Alignment explanation
Indices: 6066931--6066955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6066921 TGCTAAGGGG
6066931 TTCTAATCAGCAA
1 TTCTAATCAGCAA
6066944 TTCTAATCAGCA
1 TTCTAATCAGCA
6066956 GGCAACATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
TTCTAATCAGCAA
Found at i:6067923 original size:24 final size:24
Alignment explanation
Indices: 6067896--6067956 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
6067886 ACGGTTCAGT
*
6067896 GGTTCTGGCCGGTTCACTAATAGC
1 GGTTCTGACCGGTTCACTAATAGC
6067920 GGTTCTGACCGGTTCACTAATAGC
1 GGTTCTGACCGGTTCACTAATAGC
*
6067944 GGTTC-AACCGGTT
1 GGTTCTGACCGGTT
6067957 TAGATTGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 7 0.20
24 28 0.80
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.30
Consensus pattern (24 bp):
GGTTCTGACCGGTTCACTAATAGC
Found at i:6097977 original size:18 final size:20
Alignment explanation
Indices: 6097954--6097993 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6097944 CAAGAAGAAT
6097954 AATTTA-GTG-AGGTAATAC
1 AATTTATGTGAAGGTAATAC
*
6097972 AATTTATTTGAAGGTAATAC
1 AATTTATGTGAAGGTAATAC
6097992 AA
1 AA
6097994 ACTGCTAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 2 0.11
20 11 0.58
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.35
Consensus pattern (20 bp):
AATTTATGTGAAGGTAATAC
Found at i:6103499 original size:38 final size:35
Alignment explanation
Indices: 6103424--6103499 Score: 82
Period size: 38 Copynumber: 2.1 Consensus size: 35
6103414 ATCTTTTCAT
* *
6103424 TTTTTTTAAAAAAAATATAAATTTTATGAATTTAAA
1 TTTTTTTAAAAAAAATATAAATTTTAT-AAGTAAAA
6103460 TTTTTTTAAAGAAAATATATAAATTAATTAT-AGTAAAA
1 TTTTTTTAAA-AAAA-ATATAAATT--TTATAAGTAAAA
6103498 TT
1 TT
6103500 ATAATAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
36 10 0.29
37 4 0.12
38 16 0.47
40 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (35 bp):
TTTTTTTAAAAAAAATATAAATTTTATAAGTAAAA
Found at i:6103673 original size:18 final size:18
Alignment explanation
Indices: 6103650--6103694 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
6103640 ACATTCCCAG
6103650 TAATCTTATTCTCATCGA
1 TAATCTTATTCTCATCGA
*
6103668 TAATCTTATTCTCATTGA
1 TAATCTTATTCTCATCGA
6103686 TAATCTTAT
1 TAATCTTAT
6103695 ATTCCGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (18 bp):
TAATCTTATTCTCATCGA
Found at i:6108903 original size:164 final size:167
Alignment explanation
Indices: 6108630--6108960 Score: 641
Period size: 164 Copynumber: 2.0 Consensus size: 167
6108620 TGTATTACAA
6108630 AATTAATTTTACAAACAATTAGGCGGATAATATGGCAATCAAAAGGTAATAGTAACAAGTTTTAA
1 AATTAATTTTACAAACAATTAGGCGGATAATATGGCAATCAAAAGGTAATAGTAACAAGTTTTAA
6108695 GAAACTTATAATATACTGGGACATACCTAAACATACTGTTAGCTTGTCATTTCGAGTACACGATA
66 GAAACTTATAATATACTGGGACATACCTAAACATACTGTTAGCTTGTCATTTCGAGTACACGATA
6108760 CTCATTATCTTCTTGTTTACTCCCATTAATA-TCAGG
131 CTCATTATCTTCTTGTTTACTCCCATTAATATTCAGG
6108796 AATTAATTTTACAAACAATTAGGCGGAT-A-ATGGCAATCAAAAGGTAATAGTAACAAGTTTTAA
1 AATTAATTTTACAAACAATTAGGCGGATAATATGGCAATCAAAAGGTAATAGTAACAAGTTTTAA
6108859 GAAACTTATAATATACTGGGACATACCTAAACATACTGTTAGCTTGTCATTTCGAGTACACGATA
66 GAAACTTATAATATACTGGGACATACCTAAACATACTGTTAGCTTGTCATTTCGAGTACACGATA
6108924 CTCATTATCTTCTTGTTTACTCCCATTAATATTCAGG
131 CTCATTATCTTCTTGTTTACTCCCATTAATATTCAGG
6108961 TCATTGTGAC
Statistics
Matches: 164, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
164 130 0.79
165 6 0.04
166 28 0.17
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (167 bp):
AATTAATTTTACAAACAATTAGGCGGATAATATGGCAATCAAAAGGTAATAGTAACAAGTTTTAA
GAAACTTATAATATACTGGGACATACCTAAACATACTGTTAGCTTGTCATTTCGAGTACACGATA
CTCATTATCTTCTTGTTTACTCCCATTAATATTCAGG
Found at i:6110129 original size:10 final size:10
Alignment explanation
Indices: 6110116--6110152 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
6110106 AACAAAAATC
6110116 CCGGTTTTTT
1 CCGGTTTTTT
*
6110126 CCGGTTTTCT
1 CCGGTTTTTT
6110136 -CGGTTTTTT
1 CCGGTTTTTT
6110145 CCGGTTTT
1 CCGGTTTT
6110153 CAGCCGGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.57
Consensus pattern (10 bp):
CCGGTTTTTT
Found at i:6110141 original size:19 final size:19
Alignment explanation
Indices: 6110117--6110153 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
6110107 ACAAAAATCC
6110117 CGGTTTTTTCCGGTTTTCT
1 CGGTTTTTTCCGGTTTTCT
6110136 CGGTTTTTTCCGGTTTTC
1 CGGTTTTTTCCGGTTTTC
6110154 AGCCGGTCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.57
Consensus pattern (19 bp):
CGGTTTTTTCCGGTTTTCT
Found at i:6110544 original size:2 final size:2
Alignment explanation
Indices: 6110537--6110567 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6110527 GTGTTGTGTT
6110537 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6110568 TATGAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6111560 original size:163 final size:163
Alignment explanation
Indices: 6111255--6111593 Score: 522
Period size: 163 Copynumber: 2.1 Consensus size: 163
6111245 AATGAAACAA
* *
6111255 GTTTTGTCATATTTTTATCTGTTATATTGTTATGTATCGATACATGTTTATACAATATCGATACT
1 GTTTTGTCATATTTTTATCTGTTATATTGTTATGTATCGATACATATTTATACAATATCAATACT
* *
6111320 TTATAGGCGCTATTATTGCTTTCTTTTAAATTCCAAAAGTATTGATACTTACTTGAATGATATCT
66 TTATAGGCGCTATTATTGCTTTCTTTTAAATTCCAAAAGTATCGATACTTACTTGAATGATATCG
*
6111385 ATACCTTTCAACATATTTGGTAGCTCTTTACCG
131 ATACCTTTCAACATATTTGGTAGCGCTTTACCG
6111418 GTTTTGTCATATTTTTA-CATGTTATATTTGTTATGTATCGATACATATTTATA-AATATCAATA
1 GTTTTGTCATATTTTTATC-TGTTATA-TTGTTATGTATCGATACATATTTATACAATATCAATA
* * * * *
6111481 TTTTATAGGCGTTATTATTGATTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGTA
64 CTTTATAGGCGCTATTATTG-CTTTCTTTTAAATTCCAAAAGTATCGATACTTACTTGAATGATA
*
6111546 TCGATACC-TTCAACATATTTGGTAGCGCTTTACTG
128 TCGATACCTTTCAACATATTTGGTAGCGCTTTACCG
*
6111581 GTTTTATCATATT
1 GTTTTGTCATATT
6111594 GAACCCCTTT
Statistics
Matches: 161, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
162 1 0.01
163 88 0.55
164 72 0.45
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (163 bp):
GTTTTGTCATATTTTTATCTGTTATATTGTTATGTATCGATACATATTTATACAATATCAATACT
TTATAGGCGCTATTATTGCTTTCTTTTAAATTCCAAAAGTATCGATACTTACTTGAATGATATCG
ATACCTTTCAACATATTTGGTAGCGCTTTACCG
Found at i:6111727 original size:182 final size:183
Alignment explanation
Indices: 6111419--6111831 Score: 564
Period size: 182 Copynumber: 2.3 Consensus size: 183
6111409 TCTTTACCGG
* *
6111419 TTTTGTCATATTTTTACATGTTATATTTGTTATGTATCGATACATATTTATAAATATCAATATTT
1 TTTTGTCATATTTTTACATGATATA-TTGTTATGTATCGATACATATTTATAAATATCAATACTT
**
6111484 TATAGGCGTTATTATTGATTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGTATCG
65 TATAGGCACTATTATTGATTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGTATCG
*** *
6111549 ATACCTTCAACATATTTGGTAGCGCTTTA-CTGGTTTTATCATATTGAACCC-CT
130 ATACCTTCAACATATCCAGTAGCGCTTTATC-GGTTTTATCATATTGAACCCGAT
* * * **
6111602 TTTTGTCATACTTTTACATGATATATTGTTATGTGTCGATACATGTTTATAAAATATTGATACTT
1 TTTTGTCATATTTTTACATGATATATTGTTATGTATCGATACATATTTAT-AAATATCAATACTT
* * *
6111667 TATA-GCACTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCGATGCTTATTTTAATGGTATCG
65 TATAGGCACTATTATTGATTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGTATCG
* *
6111731 ATACCTTCAACATATCCAGTAGCGTTTTATCGGTTTTTTCATATTGAACCCGAT
130 ATACCTTCAACATATCCAGTAGCGCTTTATCGGTTTTATCATATTGAACCCGAT
** * * *
6111785 TTTT-TCATATTTTTAGTTAATATATTGTTATGTATCGACACGTATTT
1 TTTTGTCATATTTTTACATGATATATTGTTATGTATCGATACATATTT
6111832 GAATGGTATC
Statistics
Matches: 201, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
182 157 0.78
183 44 0.22
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (183 bp):
TTTTGTCATATTTTTACATGATATATTGTTATGTATCGATACATATTTATAAATATCAATACTTT
ATAGGCACTATTATTGATTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGTATCGA
TACCTTCAACATATCCAGTAGCGCTTTATCGGTTTTATCATATTGAACCCGAT
Found at i:6112235 original size:29 final size:31
Alignment explanation
Indices: 6112203--6112266 Score: 105
Period size: 29 Copynumber: 2.1 Consensus size: 31
6112193 ATATATTTTA
6112203 AAATATATTACTTTGAACA-T-AAATATAAT
1 AAATATATTACTTTGAACATTAAAATATAAT
6112232 AAATATATTACTTTGAACATTTAAAATATAAT
1 AAATATATTACTTTGAACA-TTAAAATATAAT
6112264 AAA
1 AAA
6112267 AATAGAAGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 19 0.59
31 1 0.03
32 12 0.38
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (31 bp):
AAATATATTACTTTGAACATTAAAATATAAT
Found at i:6112522 original size:18 final size:19
Alignment explanation
Indices: 6112484--6112530 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
6112474 ACCCAGATCG
* *
6112484 AGTTAAACTATTTTTAGAT
1 AGTTAAAATATTTTTAAAT
6112503 AGTTAAAATA-TTTTAAAT
1 AGTTAAAATATTTTTAAAT
*
6112521 AGTTGAAATA
1 AGTTAAAATA
6112531 ATATTATTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.43
Consensus pattern (19 bp):
AGTTAAAATATTTTTAAAT
Found at i:6113185 original size:29 final size:28
Alignment explanation
Indices: 6113152--6113209 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
6113142 ACCCAACCCA
*
6113152 TAGGTCGCCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCACTCC-GGCGACCTTG
6113181 TAGGTCGCCATGCACTCCGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGCGACCTTG
6113209 T
1 T
6113210 CTCCTTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.12, C:0.36, G:0.29, T:0.22
Consensus pattern (28 bp):
TAGGTCGCCATGCACTCCGGCGACCTTG
Found at i:6114899 original size:48 final size:48
Alignment explanation
Indices: 6114828--6114923 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
6114818 AATAATAATA
6114828 CAGCAAAAATCGGTGGATGTCTTTTAATGCTGCAATCATGGGCTTGGC
1 CAGCAAAAATCGGTGGATGTCTTTTAATGCTGCAATCATGGGCTTGGC
6114876 CAGCAAAAATCGGTGGATGTCTTTTAATGCTGCAATCATGGGCTTGGC
1 CAGCAAAAATCGGTGGATGTCTTTTAATGCTGCAATCATGGGCTTGGC
6114924 ATAAACTTCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (48 bp):
CAGCAAAAATCGGTGGATGTCTTTTAATGCTGCAATCATGGGCTTGGC
Found at i:6116438 original size:14 final size:14
Alignment explanation
Indices: 6116417--6116720 Score: 191
Period size: 14 Copynumber: 22.3 Consensus size: 14
6116407 ATTAGTAATA
6116417 ATTATTAAATCATT
1 ATTATTAAATCATT
*
6116431 AGTATTAAATCATT
1 ATTATTAAATCATT
*
6116445 ATTA-TAAA--ATC
1 ATTATTAAATCATT
*
6116456 ATTACTAAATCATT
1 ATTATTAAATCATT
*
6116470 ACTATTAAATCATT
1 ATTATTAAATCATT
*
6116484 ATTA-T-AATGATT
1 ATTATTAAATCATT
6116496 ATTATTAAATC---
1 ATTATTAAATCATT
*
6116507 ATTATT--ATCTTT
1 ATTATTAAATCATT
6116519 ATTATTAAATCATT
1 ATTATTAAATCATT
*
6116533 ATTA-T-AATGATT
1 ATTATTAAATCATT
*
6116545 ATTACTAAATCATT
1 ATTATTAAATCATT
*
6116559 ATTA-T-AA-GATT
1 ATTATTAAATCATT
*
6116570 ATTATCAAATCATT
1 ATTATTAAATCATT
*
6116584 ACTAAATCATCAAATCATT
1 A-T---T-ATTAAATCATT
*
6116603 AAATATTAAA--ATT
1 -ATTATTAAATCATT
6116616 ATTATTAAATCATT
1 ATTATTAAATCATT
*
6116630 ATTA-T-AATGATT
1 ATTATTAAATCATT
*
6116642 ATTACTAAATCATT
1 ATTATTAAATCATT
*
6116656 ATTA-T-AATGATT
1 ATTATTAAATCATT
*
6116668 ATTATCAAATCATT
1 ATTATTAAATCATT
6116682 ACTAAATCATTAAATCATT
1 A-T---T-ATTAAATCATT
*
6116701 AAATATTAAAATCATT
1 -ATTATT-AAATCATT
6116717 ATTA
1 ATTA
6116721 AATAATAATA
Statistics
Matches: 230, Mismatches: 26, Indels: 67
0.71 0.08 0.21
Matches are distributed among these distances:
9 3 0.01
11 19 0.08
12 60 0.26
13 17 0.07
14 83 0.36
15 13 0.06
16 10 0.04
18 2 0.01
19 21 0.09
20 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (14 bp):
ATTATTAAATCATT
Found at i:6116496 original size:26 final size:26
Alignment explanation
Indices: 6116417--6116682 Score: 270
Period size: 26 Copynumber: 10.6 Consensus size: 26
6116407 ATTAGTAATA
* *
6116417 ATTATTAAATCATTAGTATTAAATCATT
1 ATTATTAAATCATTATTA-T-AATGATT
* * *
6116445 ATTATAAAATCATTACTA-AATCATT
1 ATTATTAAATCATTATTATAATGATT
*
6116470 ACTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
6116496 ATTATTAAATCATTATTAT-CT--TT
1 ATTATTAAATCATTATTATAATGATT
6116519 ATTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
6116545 ATTACTAAATCATTATTATAA-GATT
1 ATTATTAAATCATTATTATAATGATT
* * * *
6116570 ATTATCAAATCATTACTA-AATCATCAA
1 ATTATTAAATCATTATTATAATGAT--T
*
6116597 ATCATT-AA--A-TATTA-AA--ATT
1 ATTATTAAATCATTATTATAATGATT
6116616 ATTATTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
6116642 ATTACTAAATCATTATTATAATGATT
1 ATTATTAAATCATTATTATAATGATT
*
6116668 ATTATCAAATCATTA
1 ATTATTAAATCATTA
6116683 CTAAATCATT
Statistics
Matches: 201, Mismatches: 23, Indels: 30
0.79 0.09 0.12
Matches are distributed among these distances:
19 5 0.02
20 2 0.01
21 2 0.01
22 1 0.00
23 32 0.16
24 6 0.03
25 44 0.22
26 89 0.44
27 4 0.02
28 16 0.08
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (26 bp):
ATTATTAAATCATTATTATAATGATT
Found at i:6116537 original size:49 final size:51
Alignment explanation
Indices: 6116433--6116563 Score: 51
Period size: 49 Copynumber: 2.5 Consensus size: 51
6116423 AAATCATTAG
* * * * *
6116433 TATTAAATCATTATTATAAAATCATTACTAAATCATTACTATTAA--ATCAT
1 TATTAAATCATTATTATAATATTATTATTAAATCATTATTA-TAATGATTAT
* * * *
6116483 TATTATAATGATTATTATTAA-ATCATTATT--ATCTTTATTATTAA--ATCAT
1 TATTA-AATCATTATTA-TAATATTATTATTAAATCATTATTA-TAATGATTAT
*
6116532 TATTATAATGATTATTACTAAATCATTATTAT
1 TATTA-AATCATTATTA-T-AAT-ATTATTAT
6116564 AAGATTATTA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
49 35 0.50
50 7 0.10
51 18 0.26
52 10 0.14
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (51 bp):
TATTAAATCATTATTATAATATTATTATTAAATCATTATTATAATGATTAT
Found at i:6116545 original size:20 final size:21
Alignment explanation
Indices: 6116499--6116545 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
6116489 AATGATTATT
* *
6116499 ATTAAATCATTATTATCTTTATT
1 ATTAAATCATTATTA--TTAATG
6116522 ATTAAATCATTATTA-TAATG
1 ATTAAATCATTATTATTAATG
6116542 ATTA
1 ATTA
6116546 TTACTAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
23 15 0.68
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.51
Consensus pattern (21 bp):
ATTAAATCATTATTATTAATG
Found at i:6116629 original size:97 final size:97
Alignment explanation
Indices: 6116519--6116821 Score: 431
Period size: 97 Copynumber: 3.1 Consensus size: 97
6116509 TATTATCTTT
6116519 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAAGATTATTATCAAATCATT
1 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAAGATTATTATCAAATCATT
*
6116584 ACTAAATCATCAAATCATTAAATATTAAAATT
66 ACTAAATCATCAAATCATTAAATATTAAAATC
6116616 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAA-GATTATTATCAAATCAT
*
6116681 TACTAAATCATTAAATCATTAAATATTAAAATC
65 TACTAAATCATCAAATCATTAAATATTAAAATC
* * *
6116714 ATTATTAAATAATAATATTA-AA--ATTATTACTAAATCATCAAATCATTAA-A-TATTA--AAA
1 ATTATTAAATCAT--TATTATAATGATTATTACTAAATCAT--TATTA-TAAGATTATTATCAAA
* *
6116772 TCATTAGTAAATCATCAAATAATTAAATATTAAAATC
61 TCATTACTAAATCATCAAATCATTAAATATTAAAATC
*
6116809 ATTACTAAATCAT
1 ATTATTAAATCAT
6116822 CAAATCATTA
Statistics
Matches: 190, Mismatches: 10, Indels: 14
0.89 0.05 0.07
Matches are distributed among these distances:
95 48 0.25
97 68 0.36
98 61 0.32
99 5 0.03
100 8 0.04
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.41
Consensus pattern (97 bp):
ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAAGATTATTATCAAATCATT
ACTAAATCATCAAATCATTAAATATTAAAATC
Found at i:6116697 original size:8 final size:8
Alignment explanation
Indices: 6116684--6116875 Score: 84
Period size: 8 Copynumber: 23.5 Consensus size: 8
6116674 AAATCATTAC
6116684 TAAATCAT
1 TAAATCAT
6116692 TAAATCAT
1 TAAATCAT
6116700 TAAAT-AT
1 TAAATCAT
6116707 TAAAATCAT
1 T-AAATCAT
6116716 TATTAA--AT
1 TA--AATCAT
*
6116724 AATAAT-AT
1 TA-AATCAT
*
6116732 TAAAATTATT
1 T-AAATCA-T
6116742 ACTAAATCAT
1 --TAAATCAT
*
6116752 CAAATCAT
1 TAAATCAT
6116760 TAAAT-AT
1 TAAATCAT
6116767 TAAAATCATT
1 T-AAATCA-T
6116777 AGTAAATCAT
1 --TAAATCAT
* *
6116787 CAAATAAT
1 TAAATCAT
6116795 TAAAT-AT
1 TAAATCAT
6116802 TAAAATCATT
1 T-AAATCA-T
6116812 ACTAAATCAT
1 --TAAATCAT
*
6116822 CAAATCAT
1 TAAATCAT
6116830 TAAAT-AT
1 TAAATCAT
6116837 TAAA--A-
1 TAAATCAT
*
6116842 T-AATGAT
1 TAAATCAT
6116849 TAAATCAT
1 TAAATCAT
*
6116857 CAAATCAT
1 TAAATCAT
6116865 TAAAT-AT
1 TAAATCAT
6116872 TAAA
1 TAAA
6116876 ATTATTATTA
Statistics
Matches: 147, Mismatches: 13, Indels: 49
0.70 0.06 0.23
Matches are distributed among these distances:
4 2 0.01
5 1 0.01
6 2 0.01
7 25 0.17
8 82 0.56
9 7 0.05
10 8 0.05
11 17 0.12
12 3 0.02
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (8 bp):
TAAATCAT
Found at i:6116723 original size:35 final size:35
Alignment explanation
Indices: 6116674--6116891 Score: 276
Period size: 35 Copynumber: 6.5 Consensus size: 35
6116664 GATTATTATC
*
6116674 AAATCATTACTAAATCATTAAATCATTAAATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
*
6116709 AAATCA-T--T--AT--T-AAAT-AAT-AATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
*
6116734 AAATTATTACTAAATCATCAAATCATTAAATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
* *
6116769 AAATCATTAGTAAATCATCAAATAATTAAATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
6116804 AAATCATTACTAAATCATCAAATCATTAAATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
* * *
6116839 AAATAATGATTAAATCATCAAATCATTAAATATTA
1 AAATCATTACTAAATCATCAAATCATTAAATATTA
* *
6116874 AAATTATTATTAAATCAT
1 AAATCATTACTAAATCAT
6116892 TTTTATGGTT
Statistics
Matches: 160, Mismatches: 13, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.08
26 3 0.02
27 4 0.03
28 2 0.01
30 4 0.03
32 2 0.01
33 4 0.03
34 3 0.02
35 126 0.79
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.37
Consensus pattern (35 bp):
AAATCATTACTAAATCATCAAATCATTAAATATTA
Found at i:6116731 original size:123 final size:119
Alignment explanation
Indices: 6116493--6116751 Score: 296
Period size: 123 Copynumber: 2.1 Consensus size: 119
6116483 TATTATAATG
* *
6116493 ATTATTATTAAATCATTATTATCTTTATTATTAAATCATTATTATAATGATTATTACTAAATCAT
1 ATTATTATTAAATCATTATTATATTTATTACTAAATCATTATTATAATGATTATTACTAAATCAT
* * * *
6116558 TATTATAAGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAA
66 TACTATAACATTATCATCAAATCATTAC-AAATCATCAAATCAATAAATATTAAA
6116613 ATTATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTA-TCAAA
1 ATTATTATTAAATCATTATTAT-AT--TTATTACTAAATCATTATTATAATGATTATTACT-AAA
* *
6116677 TCATTACTA-AATCATTAAATCATTAAAT-ATTA-AAATCATTATTAAAT-AAT-AATATTAAA
62 TCATTACTATAA-CATT--ATCATCAAATCATTACAAATC---ATCAAATCAATAAATATTAAA
*
6116736 ATTATTACTAAATCAT
1 ATTATTATTAAATCAT
6116752 CAAATCATTA
Statistics
Matches: 120, Mismatches: 9, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
120 22 0.18
121 1 0.01
122 8 0.07
123 69 0.57
124 6 0.05
125 14 0.12
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (119 bp):
ATTATTATTAAATCATTATTATATTTATTACTAAATCATTATTATAATGATTATTACTAAATCAT
TACTATAACATTATCATCAAATCATTACAAATCATCAAATCAATAAATATTAAA
Found at i:6116757 original size:60 final size:61
Alignment explanation
Indices: 6116648--6116868 Score: 241
Period size: 70 Copynumber: 3.5 Consensus size: 61
6116638 GATTATTACT
* * *
6116648 AAATCATTATT--ATAATGATTATTATCAAATCATTACTAAATCATTAAATCATTAAATATTA
1 AAATCATTATTAAATAATAAATATTA--AAATCATTACTAAATCATCAAATCATTAAATATTA
*
6116709 AAATCATTATTAAATAAT-AATATTAAAATTATTACTAAATCATCAAATCATTAAATATTA
1 AAATCATTATTAAATAATAAATATTAAAATCATTACTAAATCATCAAATCATTAAATATTA
6116769 AAATCATTAGTAAATCATCAAATAATTAAATATTAAAATCATTACTAAATCATCAAATCATTAAA
1 AAATCA-T--T--AT--T-AAATAA-TAAATATTAAAATCATTACTAAATCATCAAATCATTAAA
6116834 TATTA
57 TATTA
* * *
6116839 AAATAATGATTAAATCATCAAATCATTAAA
1 AAATCATTATTAAATAAT-AAAT-ATTAAA
6116869 TATTAAAATT
Statistics
Matches: 139, Mismatches: 7, Indels: 26
0.81 0.04 0.15
Matches are distributed among these distances:
60 39 0.28
61 13 0.09
62 15 0.11
63 13 0.09
65 4 0.03
67 1 0.01
68 6 0.04
69 2 0.01
70 46 0.33
ACGTcount: A:0.52, C:0.10, G:0.01, T:0.37
Consensus pattern (61 bp):
AAATCATTATTAAATAATAAATATTAAAATCATTACTAAATCATCAAATCATTAAATATTA
Found at i:6116867 original size:158 final size:156
Alignment explanation
Indices: 6116551--6116868 Score: 358
Period size: 158 Copynumber: 2.0 Consensus size: 156
6116541 GATTATTACT
* *
6116551 AAATCATTATTATAAGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATT
1 AAATCATTATTATAAGAATATTA-CAAATCATTACTAAATCATCAAATCATTAAATATTAAAATC
* * * * * * * * *
6116616 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
65 ATTAGTAAATCATCATAATAATAAATATTAC-AAATCATTACTATAATCATAATCATCAAATCAT
** *
6116681 TACTAAATCATTAAATCATTAAATATTA
129 TAAAAAATCATTAAATCATCAAATATTA
* *
6116709 AAATCATTATTAAATAATAATATTA-AAATTATTACTAAATCATCAAATCATTAAATATTAAAAT
1 AAATCATTATT--ATAAGAATATTACAAATCATTACTAAATCATCAAATCATTAAATATTAAAAT
*
6116773 CATTAGTAAATCATCA-AATAATTAAATATTA-AAATCATTACTA-AATCATCAAATCATTAAAT
64 CATTAGTAAATCATCATAATAA-TAAATATTACAAATCATTACTATAATCAT--AATCATCAAAT
*
6116835 -ATTAAAATAATGATTAAATCATCAAATCATTA
126 CATTAAAA-AATCATTAAATCATCAAAT-ATTA
6116867 AA
1 AA
6116869 TATTAAAATT
Statistics
Matches: 135, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
155 5 0.04
156 16 0.12
157 29 0.21
158 75 0.56
160 10 0.07
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (156 bp):
AAATCATTATTATAAGAATATTACAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCA
TTAGTAAATCATCATAATAATAAATATTACAAATCATTACTATAATCATAATCATCAAATCATTA
AAAAATCATTAAATCATCAAATATTA
Found at i:6117162 original size:49 final size:49
Alignment explanation
Indices: 6117099--6117371 Score: 392
Period size: 49 Copynumber: 5.6 Consensus size: 49
6117089 ATTACTAATA
* *
6117099 ATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCTTT
1 ATTACT-AATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
6117149 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
*
6117198 ATTACTAATCATTACTACCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
*
6117247 ATTACTATTCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
* * * *
6117296 ATTACTAATCATTACTA-AATAATTATTATAATTTTAA-ATATAAATTCATT
1 ATTACTAATCATTACTATCA-AATCATTA-AATATTAATA-ATAATTTCATT
* *
6117346 ATTA--AATCATGATTATCAAATCATTA
1 ATTACTAATCATTACTATCAAATCATTA
6117372 CTAAATCAAA
Statistics
Matches: 205, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
48 17 0.08
49 161 0.79
50 27 0.13
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.44
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:6117384 original size:21 final size:22
Alignment explanation
Indices: 6117360--6117409 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
6117350 AATCATGATT
6117360 ATCAAATCATTACT-AAATCAA
1 ATCAAATCATTACTAAAATCAA
* *
6117381 ATCATATCATTATTACAAATCAA
1 ATCAAATCATTACTA-AAATCAA
6117404 A-CAAAT
1 ATCAAAT
6117410 GTTCCATGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 12 0.50
22 4 0.17
23 8 0.33
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (22 bp):
ATCAAATCATTACTAAAATCAA
Found at i:6121229 original size:28 final size:30
Alignment explanation
Indices: 6121189--6121250 Score: 110
Period size: 28 Copynumber: 2.1 Consensus size: 30
6121179 ATTTTTTATA
6121189 TAATATAATATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
6121219 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
6121247 TAAT
1 TAAT
6121251 TAACTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:6121744 original size:28 final size:28
Alignment explanation
Indices: 6121684--6121737 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
6121674 GGGCGTGCAT
6121684 ATATAACTTAAACTAACAAACTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
6121712 ATATAACTTAAACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
6121738 ATTTATACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:6121747 original size:21 final size:21
Alignment explanation
Indices: 6121714--6121762 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
6121704 CTAATATAAT
6121714 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
6121735 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
6121756 ATTAACT
1 A-TAACT
6121763 AAATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:6122191 original size:522 final size:514
Alignment explanation
Indices: 6121189--6122205 Score: 1733
Period size: 522 Copynumber: 2.0 Consensus size: 514
6121179 ATTTTTTATA
6121189 TAATATAATATATAACTTAAACTAACAAACTAATATAATATAACTTAAACTAACAAACTAATTAA
1 TAATATAATATATAACTTAAACTAACAAACTAATATAATAT-A-TTAAACTAACAAACTAATTAA
6121254 CTAAATTTTAGTTTTACCTTAAACCCTAAACTAACAAACTAATAATTTCATGTAATAAACTAAAT
64 CTAAATTTTAGTTTTACCTTAAACCCTAAACTAACAAACTAATAATTTCATGTAATAAACTAAAT
6121319 TAAACAATAAAAAATTACCTCACGAACGATGTTTGAGCCGTTATCTTCTTTTCTTTCTCTCGGCA
129 TAAACAATAAAAAATTACCTCACGAACGATGTTTGAGCCGTTATCTTCTTTTCTTTCTCTCGGCA
*
6121384 AAGTTTCTATATGTGCTTTTGTTTCTACCCTAAACCCCCATATCCTTTATATAAAGCAAATGAGC
194 AAGTTTCTATATGTGCTTCTGTTTCTACCCTAAACCCCCATATCCTTTATATAAAGCAAATGAGC
*
6121449 GTTGAATCGTGTAACTATTGAGCGTTGAAAAGTTGTAATTCAACGGCAATATTTGATGCATTTAA
259 GTTGAATCGTGTAACTATTGAGCGTTGAAAAGTTGTAATTCAACAGCAATATTTGATGCATTTAA
* *
6121514 CAGCTAAATTAACGCTATAATAATGCACCTATGGATGCATGAATCTCCCAATTATGGATGCAACG
324 CAGCTAAATTAACGCTATAATAATGCACCTATGGATGCAGGAATCTCCCAACTATGGATGCAACG
*
6121579 CATGCATGAGGGAGCAGAGGGTTAAAGCTTGGTCGCCGGGCAAGAATCTCCCAGCTATGACATGC
389 CATGCATGAGGGAGCAGAGGCTTAAAGCTTGGTCGCCGGGCAAGAATCTCCCAGCTATGACATGC
*
6121644 AGGGCATCAGAGGGTTCAAGCTTGGTCGTCGGGCGTGCATATATAACTTAAACTAACAAAC
454 AGGGCATCAGAGGGTTCAAGCTTGGTCGTCAGGCGTGCATATATAACTTAAACTAACAAAC
*
6121705 TAATAT-A-ATATAACTTAAACTAACAAACT-A-AT-A-AT-TTATACTAACAAACTAATTAACT
1 TAATATAATATATAACTTAAACTAACAAACTAATATAATATATTAAACTAACAAACTAATTAACT
6121763 AAATTTTAGTTTTACCTTAAACCCTAAACTAACAAACTAATAATTTCATGTAATAAACTAAATTA
66 AAATTTTAGTTTTACCTTAAACCCTAAACTAACAAACTAATAATTTCATGTAATAAACTAAATTA
*
6121828 AACAATAAACAATTACCTCACGAACGATGTTTGAGCCGTTATCTTCTTTTCTTCTTCTTCCTTTT
131 AACAATAAAAAATTACCTCACGAACGATGTTTGAGCCGTTA--------------TCTT-CTTTT
6121893 CTTTCTCTCGGCAAAGTTTCTATATGTGCTTCTGTTTCTACCCTAAACCCCCATATCCTTTATAT
181 CTTTCTCTCGGCAAAGTTTCTATATGTGCTTCTGTTTCTACCCTAAACCCCCATATCCTTTATAT
6121958 AAAGCAAATGAGCGTTGAATCGTGTAACTATTGAGCGTTGAAAAGTTGTAATTCAACAGCAATAT
246 AAAGCAAATGAGCGTTGAATCGTGTAACTATTGAGCGTTGAAAAGTTGTAATTCAACAGCAATAT
* *
6122023 TTGCTGCATTTAACAGCTAAATTAACGCTATAATAATGCACTTATGGATGCAGGAATCTCCCAAC
311 TTGATGCATTTAACAGCTAAATTAACGCTATAATAATGCACCTATGGATGCAGGAATCTCCCAAC
*
6122088 TATGGATGCAACGCATGCATGAGGGAGCAGAGGCTTAAAGCTTGGTCGCCGGGCATGAATCTCCC
376 TATGGATGCAACGCATGCATGAGGGAGCAGAGGCTTAAAGCTTGGTCGCCGGGCAAGAATCTCCC
6122153 AGCTATGACATGCAGGGCATCAGAGGGTTCAAGCTTGGTCGTCAGGCGTGCAT
441 AGCTATGACATGCAGGGCATCAGAGGGTTCAAGCTTGGTCGTCAGGCGTGCAT
6122206 GGCGACCTAC
Statistics
Matches: 475, Mismatches: 11, Indels: 24
0.93 0.02 0.05
Matches are distributed among these distances:
507 127 0.27
510 2 0.00
511 1 0.00
512 2 0.00
513 1 0.00
514 22 0.05
515 1 0.00
516 6 0.01
521 4 0.01
522 309 0.65
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (514 bp):
TAATATAATATATAACTTAAACTAACAAACTAATATAATATATTAAACTAACAAACTAATTAACT
AAATTTTAGTTTTACCTTAAACCCTAAACTAACAAACTAATAATTTCATGTAATAAACTAAATTA
AACAATAAAAAATTACCTCACGAACGATGTTTGAGCCGTTATCTTCTTTTCTTTCTCTCGGCAAA
GTTTCTATATGTGCTTCTGTTTCTACCCTAAACCCCCATATCCTTTATATAAAGCAAATGAGCGT
TGAATCGTGTAACTATTGAGCGTTGAAAAGTTGTAATTCAACAGCAATATTTGATGCATTTAACA
GCTAAATTAACGCTATAATAATGCACCTATGGATGCAGGAATCTCCCAACTATGGATGCAACGCA
TGCATGAGGGAGCAGAGGCTTAAAGCTTGGTCGCCGGGCAAGAATCTCCCAGCTATGACATGCAG
GGCATCAGAGGGTTCAAGCTTGGTCGTCAGGCGTGCATATATAACTTAAACTAACAAAC
Found at i:6122293 original size:21 final size:21
Alignment explanation
Indices: 6122264--6122311 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 21
6122254 ATTCCACATG
6122264 CATGTCCCATGCACAGCTCCCA
1 CATG-CCCATGCACAGCTCCCA
6122286 CATGCCCATGCACAGCTCCCA
1 CATGCCCATGCACAGCTCCCA
6122307 CATGC
1 CATGC
6122312 GTCCCTTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.23, C:0.46, G:0.15, T:0.17
Consensus pattern (21 bp):
CATGCCCATGCACAGCTCCCA
Found at i:6122573 original size:20 final size:20
Alignment explanation
Indices: 6122512--6122573 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
6122502 TAATATCTTA
*
6122512 TATTTATCATAAATTTATAAAA
1 TATTTAT-ATAAATTT-TAAAT
* * *
6122534 TATATATATAAATCTAAAAT
1 TATTTATATAAATTTTAAAT
*
6122554 TATTTATATTAATTTTAAAT
1 TATTTATATAAATTTTAAAT
6122574 AGCGGTATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 19 0.59
21 7 0.22
22 6 0.19
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (20 bp):
TATTTATATAAATTTTAAAT
Found at i:6124797 original size:20 final size:20
Alignment explanation
Indices: 6124772--6124817 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6124762 AACGGTTCAA
*
6124772 CATTCAGCGCTGAATGATTC
1 CATTCAGAGCTGAATGATTC
* *
6124792 CATTCAGAGCTGAATGGTTT
1 CATTCAGAGCTGAATGATTC
6124812 CATTCA
1 CATTCA
6124818 TAGTCGAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (20 bp):
CATTCAGAGCTGAATGATTC
Found at i:6128761 original size:20 final size:21
Alignment explanation
Indices: 6128736--6128792 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
6128726 CCTTCAGGAG
**
6128736 AAAGGATCGATCCCTT-TTCA
1 AAAGGATCGATCCCTTGGACA
* *
6128756 AAAGGATCGGTCCCTTGGAGA
1 AAAGGATCGATCCCTTGGACA
6128777 AAAGGATCGATCCCTT
1 AAAGGATCGATCCCTT
6128793 CTTTGTTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (21 bp):
AAAGGATCGATCCCTTGGACA
Found at i:6129859 original size:44 final size:44
Alignment explanation
Indices: 6129796--6129905 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
6129786 TAGCCAGGCA
* * * *
6129796 AGGTGTCGATGTTGTGTGACCGGGACCTAGCCTAAGGTA-TTGGG
1 AGGTGTCGATGCTATGTGACC-GGACCTAGCCTAAGATACTTGGC
*
6129840 AGGTGTCGATGCTATGTGACTCGGACCTCGCCTAAGATACTTGGC
1 AGGTGTCGATGCTATGTGAC-CGGACCTAGCCTAAGATACTTGGC
*
6129885 AGGTGCCGATGCTATGTGACC
1 AGGTGTCGATGCTATGTGACC
6129906 CAAACCTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
44 34 0.59
45 24 0.41
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (44 bp):
AGGTGTCGATGCTATGTGACCGGACCTAGCCTAAGATACTTGGC
Found at i:6129903 original size:45 final size:44
Alignment explanation
Indices: 6129796--6129928 Score: 142
Period size: 45 Copynumber: 3.0 Consensus size: 44
6129786 TAGCCAGGCA
* * * * *
6129796 AGGTGTCGATGTTGTGTGACCGGGACCTAGCCTAAGGTA-TTGGG
1 AGGTGTCGATGCTATGTGACC-GGACCTCGCCTAAGATACTTGGC
6129840 AGGTGTCGATGCTATGTGACTCGGACCTCGCCTAAGATACTTGGC
1 AGGTGTCGATGCTATGTGAC-CGGACCTCGCCTAAGATACTTGGC
* ** * *
6129885 AGGTGCCGATGCTATGTGACCCAAACCTCACCTGAGATACTTGG
1 AGGTGTCGATGCTATGTGA-CCGGACCTCGCCTAAGATACTTGG
6129929 GAGATGTTGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
44 33 0.43
45 42 0.55
46 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.26
Consensus pattern (44 bp):
AGGTGTCGATGCTATGTGACCGGACCTCGCCTAAGATACTTGGC
Found at i:6137693 original size:32 final size:32
Alignment explanation
Indices: 6137652--6137808 Score: 239
Period size: 32 Copynumber: 5.0 Consensus size: 32
6137642 CCAAGAGTCG
6137652 ATGATTACCTATGTCTTTCGGGACATATGGAC
1 ATGATTACCTATGTCTTTCGGGACATATGGAC
*
6137684 ATGATTACCTATGTCTTGCGGGACATATGGAC
1 ATGATTACCTATGTCTTTCGGGACATATGGAC
6137716 ATGATTACCTATGTCTTTCGGGACATATGGAC
1 ATGATTACCTATGTCTTTCGGGACATATGGAC
**
6137748 AAAATTACCTATGTCTTTCGGGACATATGGAC
1 ATGATTACCTATGTCTTTCGGGACATATGGAC
* *
6137780 A-G-TTACCTATGT-TCTTAGGAACATATGGA
1 ATGATTACCTATGTCT-TTCGGGACATATGGA
6137809 TAGGTCCTTC
Statistics
Matches: 117, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
29 1 0.01
30 23 0.20
32 93 0.79
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (32 bp):
ATGATTACCTATGTCTTTCGGGACATATGGAC
Found at i:6142271 original size:112 final size:113
Alignment explanation
Indices: 6142074--6142299 Score: 445
Period size: 112 Copynumber: 2.0 Consensus size: 113
6142064 GAAATTTGAA
6142074 TTTAAGACCTAGGTGAACATAGATACAACACTTAATCAGTGAGATAAATTAAATATTTTTTTATA
1 TTTAAGACCTAGGTGAACATAGATACAACACTTAATCAGTGAGATAAATTAAATATTTTTTTATA
6142139 ATTAATAAAAAATATATTCATATTAAATTGTTTTTGGAGC-ATGTTTT
66 ATTAATAAAAAATATATTCATATTAAATTGTTTTTGGAGCAATGTTTT
6142186 TTTAAGACCTAGGTGAACATAGATACAACACTTAATCAGTGAGATAAATTAAATATTTTTTTATA
1 TTTAAGACCTAGGTGAACATAGATACAACACTTAATCAGTGAGATAAATTAAATATTTTTTTATA
6142251 ATTAATAAAAAATATATTCATATTAAATTGTTTTTGGAGCAATGTTTT
66 ATTAATAAAAAATATATTCATATTAAATTGTTTTTGGAGCAATGTTTT
6142299 T
1 T
6142300 ATTTTTATAA
Statistics
Matches: 113, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
112 105 0.93
113 8 0.07
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (113 bp):
TTTAAGACCTAGGTGAACATAGATACAACACTTAATCAGTGAGATAAATTAAATATTTTTTTATA
ATTAATAAAAAATATATTCATATTAAATTGTTTTTGGAGCAATGTTTT
Found at i:6146700 original size:2 final size:2
Alignment explanation
Indices: 6146693--6146750 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
6146683 GATGTGTAAG
6146693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6146735 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
6146751 TTGGCCATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6152063 original size:11 final size:11
Alignment explanation
Indices: 6152047--6152071 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6152037 CGTATTACCA
6152047 CGACCACGAGC
1 CGACCACGAGC
6152058 CGACCACGAGC
1 CGACCACGAGC
6152069 CGA
1 CGA
6152072 GCCGTGCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.44, G:0.28, T:0.00
Consensus pattern (11 bp):
CGACCACGAGC
Found at i:6152301 original size:34 final size:34
Alignment explanation
Indices: 6152259--6152333 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 34
6152249 TTTATATTAG
**
6152259 TTATTTATTTTTTAAAAATATTCATCTTAAAATT
1 TTATTTATTTACTAAAAATATTCATCTTAAAATT
* * *
6152293 TTATTTA-TTACTAGAGATGTTCATCTTAAAATT
1 TTATTTATTTACTAAAAATATTCATCTTAAAATT
6152326 TTATTTAT
1 TTATTTAT
6152334 ATCTATATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 28 0.80
34 7 0.20
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.55
Consensus pattern (34 bp):
TTATTTATTTACTAAAAATATTCATCTTAAAATT
Found at i:6156916 original size:31 final size:31
Alignment explanation
Indices: 6156881--6157102 Score: 390
Period size: 31 Copynumber: 7.2 Consensus size: 31
6156871 GGTCACAATA
6156881 TAAACTGTTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
*
6156912 TAAACTGTTCATATGTGCCTTTAAACATATA
1 TAAACTGTTCATATGTGCCTTTAAACATATG
*
6156943 TAAACTATTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
* *
6156974 TAAATTGTTTATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
6157005 TAAACTGTTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
*
6157036 TAAACTGTTCATATATGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
*
6157067 TAAACTGTTCATATATGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
6157098 TAAAC
1 TAAAC
6157103 CCTCGACTCT
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 182 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (31 bp):
TAAACTGTTCATATGTGCCTTTAAACATATG
Found at i:6157716 original size:64 final size:64
Alignment explanation
Indices: 6157608--6157784 Score: 230
Period size: 64 Copynumber: 2.8 Consensus size: 64
6157598 TAATGAAGGT
* * ** * *
6157608 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAGT-AATATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGT-GTCAATATTAATGGG
* ** * *
6157672 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTGTCAATATTAATGGG
*
6157736 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGT
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGT
6157785 CTTTATTTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
63 1 0.01
64 97 0.99
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTGTCAATATTAATGGG
Found at i:6157805 original size:64 final size:64
Alignment explanation
Indices: 6157608--6157816 Score: 208
Period size: 64 Copynumber: 3.3 Consensus size: 64
6157598 TAATGAAGGT
* * ** ** * * * ** *
6157608 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAGT-AATATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAAAGAG
* * *
6157672 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAAAGAG
** *
6157736 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTCTTTATT-TTAAA-AG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAAAGAG
6157799 AGTGCATCGATGCACTAC
1 A-TGCATCGATGCACTAC
6157817 CAATGCATTG
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
63 3 0.02
64 117 0.94
65 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAAAGAG
Found at i:6158956 original size:13 final size:13
Alignment explanation
Indices: 6158923--6158956 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
6158913 AATATATTTT
6158923 TTTAAAAATAAAA
1 TTTAAAAATAAAA
6158936 -TTAAAAATAAAA
1 TTTAAAAATAAAA
*
6158948 TTTATAAAT
1 TTTAAAAAT
6158957 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
TTTAAAAATAAAA
Found at i:6172073 original size:176 final size:175
Alignment explanation
Indices: 6171880--6172235 Score: 522
Period size: 178 Copynumber: 2.0 Consensus size: 175
6171870 ATTAAATTTT
* * *
6171880 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAA-CAATTAATAAT
1 AAATATTAAAAATATTATATATAACATATGGGCTAAGCCCAAACAATTTAAAACCAATTAATAAT
6171944 TTAAGATCCAATAACTTTTAAACCTAAATCAATACTAATT-ATTAAAAAAATTATAT-AATTTT-
66 TTAAGATCCAATAACTTTTAAACCTAAATCAATACTAATTAATT-AAAAAATTATATAAATTTTA
* * *
6172006 TTTTATATATATATATATTTAAATTAATTGTAAACTGTTTTTTTAATTAA
130 TTTTATA-ATATATAT-TAT-AATTAATTATAAACT-TTTTTTGAATTAA
*
6172056 AAATATTAAAAATATTATATATAACATTTGGGCTAAGCCCAAACAATTTAAAACTCAATTAATAA
1 AAATATTAAAAATATTATATATAACATATGGGCTAAGCCCAAACAATTTAAAAC-CAATTAATAA
* * * *
6172121 TTTAAGATCCAATAATTTTTAAATCTAAATCAATATTAATTAATTAAAAAATTATCTGAAATTTT
65 TTTAAGATCCAATAACTTTTAAACCTAAATCAATACTAATTAATTAAAAAATTATAT-AAATTTT
6172186 ATTTTATAATATATATTATAATTAATTATAAACTTTTTTTGAATTAA
129 ATTTTATAATATATATTATAATTAATTATAAACTTTTTTTGAATTAA
6172233 AAA
1 AAA
6172236 CATTTAATTT
Statistics
Matches: 163, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
176 49 0.30
177 15 0.09
178 73 0.45
179 5 0.03
180 14 0.09
181 7 0.04
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (175 bp):
AAATATTAAAAATATTATATATAACATATGGGCTAAGCCCAAACAATTTAAAACCAATTAATAAT
TTAAGATCCAATAACTTTTAAACCTAAATCAATACTAATTAATTAAAAAATTATATAAATTTTAT
TTTATAATATATATTATAATTAATTATAAACTTTTTTTGAATTAA
Found at i:6172361 original size:28 final size:28
Alignment explanation
Indices: 6172307--6172362 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
6172297 CCGAAATTAA
* *
6172307 TTCGGTTCGGTTAATGTTTGAAAAAAAG
1 TTCGGTTCGGTTAACGGTTGAAAAAAAG
*
6172335 TTCGGTTCGGTTAACGGTTAAAGAAAAA
1 TTCGGTTCGGTTAACGGTTGAA-AAAAA
6172363 AAAAAGTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (28 bp):
TTCGGTTCGGTTAACGGTTGAAAAAAAG
Found at i:6172768 original size:20 final size:20
Alignment explanation
Indices: 6172743--6172835 Score: 125
Period size: 20 Copynumber: 4.6 Consensus size: 20
6172733 ATTTTGGACT
6172743 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
6172763 ATCGCAATGTGAATATGTAA
1 ATCGCAATGCGAATATGTAA
***
6172783 ATCGCAATGCG-ATAATCGGCT
1 ATCGCAATGCGAAT-AT-GTAA
6172804 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
6172824 ATCGCAATGCGA
1 ATCGCAATGCGA
6172836 TAGTCGAAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
19 2 0.03
20 44 0.71
21 14 0.23
22 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:6172850 original size:41 final size:41
Alignment explanation
Indices: 6172708--6172856 Score: 128
Period size: 41 Copynumber: 3.6 Consensus size: 41
6172698 ATATTTGCAT
** * * * *
6172708 TGCGATAGTCGAAGTTCGCGTTGCGATTTTGGACTATCGCAA
1 TGCGATAGTCGAAGTTCGCAATGCGAATATGTA-AATCGCAA
* *
6172750 TGCGAATA-T-GTAA-ATCGCAATGTGAATATGTAAATCGCAA
1 TGCG-ATAGTCG-AAGTTCGCAATGCGAATATGTAAATCGCAA
*
6172790 TGCGATAATCG--GCTATCGCAATGCGAATATGTAAATCGCAA
1 TGCGATAGTCGAAG-T-TCGCAATGCGAATATGTAAATCGCAA
*
6172831 TGCGATAGTCGAAGTTCGCATTGCGA
1 TGCGATAGTCGAAGTTCGCAATGCGA
6172857 TAGTCGACTA
Statistics
Matches: 86, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
39 3 0.03
40 12 0.14
41 59 0.69
42 8 0.09
43 4 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
TGCGATAGTCGAAGTTCGCAATGCGAATATGTAAATCGCAA
Found at i:6172855 original size:21 final size:21
Alignment explanation
Indices: 6172825--6172980 Score: 128
Period size: 21 Copynumber: 7.5 Consensus size: 21
6172815 AATATGTAAA
*
6172825 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
6172846 TCGCATTGCGATAGTCG-ACT
1 TCGCATTGCGATAGTCGAAGT
*
6172866 ATCGCATTGCGAT-TTAC-ATA-T
1 -TCGCATTGCGATAGT-CGA-AGT
* *
6172887 TCGTATTGCGAT-TTAC-ATA-T
1 TCGCATTGCGATAGT-CGA-AGT
*
6172907 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGT
* * *
6172928 TCGCATTGTGATAGTCCAATT
1 TCGCATTGCGATAGTCGAAGT
6172949 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
6172970 TCGCGTTGCGA
1 TCGCATTGCGA
6172981 ATCTGGAAAC
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
20 35 0.30
21 80 0.69
22 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (21 bp):
TCGCATTGCGATAGTCGAAGT
Found at i:6172896 original size:20 final size:20
Alignment explanation
Indices: 6172867--6172918 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
6172857 TAGTCGACTA
6172867 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
6172887 TCGTATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
6172907 TCGCATTGCGAT
1 TCGCATTGCGAT
6172919 AGTCCAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:6174873 original size:92 final size:92
Alignment explanation
Indices: 6174716--6174899 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
6174706 TATTTCATTG
6174716 ACATTGCTAAGTCTGGTGAATAAATTTATCTGCAACAATTGGTTTCCTGATGTATGAAGTGGAAA
1 ACATTGCTAAGTCTGGTGAATAAATTTATCTGCAACAATTGGTTTCCTGATGTATGAAGTGGAAA
6174781 ATGTCAGTATAAGGCAGCCTAATTCGT
66 ATGTCAGTATAAGGCAGCCTAATTCGT
6174808 ACATTGCTAAGTCTGGTGAATAAATTTATCTGCAACAATTGGTTTCCTGATGTATGAAGTGGAAA
1 ACATTGCTAAGTCTGGTGAATAAATTTATCTGCAACAATTGGTTTCCTGATGTATGAAGTGGAAA
6174873 ATGTCAGTATAAGGCAGCCTAATTCGT
66 ATGTCAGTATAAGGCAGCCTAATTCGT
6174900 GCCTGTCTTA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (92 bp):
ACATTGCTAAGTCTGGTGAATAAATTTATCTGCAACAATTGGTTTCCTGATGTATGAAGTGGAAA
ATGTCAGTATAAGGCAGCCTAATTCGT
Found at i:6176490 original size:13 final size:13
Alignment explanation
Indices: 6176472--6176496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6176462 TCCATGGATT
6176472 CCTCATCCCAACC
1 CCTCATCCCAACC
6176485 CCTCATCCCAAC
1 CCTCATCCCAAC
6176497 AATACCCACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.60, G:0.00, T:0.16
Consensus pattern (13 bp):
CCTCATCCCAACC
Found at i:6180569 original size:6 final size:6
Alignment explanation
Indices: 6180558--6180582 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6180548 TAAGGGAGGG
6180558 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
6180583 GAACTAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Done.