genome.fa.s9612.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009612.1 Hibiscus syriacus cultivar Beakdansim tig00116998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49536

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3520--3601	20	4.1	19	77	14	67	25	31	25	17	1.97
5774--5829	25	2.4	23	82	8	69	41	0	35	23	1.55
12673--12742	19	3.7	19	83	11	99	28	21	27	22	1.99
12673--12758	37	2.4	37	96	2	156	27	20	26	24	1.99
12673--12758	19	4.7	17	81	12	91	27	20	26	24	1.99
12783--12872	28	3.2	28	96	0	171	25	20	27	26	1.99
12896--12986	19	4.8	19	97	0	173	20	16	30	31	1.95
20934--20995	32	1.9	31	81	12	72	29	6	4	59	1.43
22334--22404	33	2.2	33	89	5	108	29	14	14	42	1.84
24943--24978	16	2.1	18	90	10	58	75	0	16	8	1.04
25098--25142	20	2.2	20	88	0	72	35	22	22	20	1.96
25136--25195	20	3.0	19	85	9	75	41	25	16	16	1.89
25669--25722	20	2.7	19	83	8	72	14	16	22	46	1.84
27778--27878	42	2.4	42	77	6	114	22	33	19	23	1.97
27778--27876	21	4.7	21	76	9	85	23	33	20	23	1.97
29500--29542	20	2.2	20	95	0	77	13	16	25	44	1.85
29718--29804	39	2.2	39	97	0	165	17	14	20	47	1.83
30116--30152	18	2.1	18	89	0	56	51	10	5	32	1.60
30577--30627	20	2.5	20	80	0	66	49	21	13	15	1.79
31030--31066	18	2.1	18	94	0	65	16	2	24	56	1.53
33119--33143	3	8.3	3	100	0	50	0	36	0	64	0.94
33318--33371	24	2.2	24	86	0	72	38	24	16	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34071--34108	16	2.5	15	84	12	51	65	0	5	28	1.14
34265--34301	19	1.9	19	94	0	65	32	10	18	37	1.86
42274--42323	23	2.2	23	92	0	82	36	18	22	24	1.95
42274--42341	23	2.8	24	82	13	77	33	17	20	27	1.95
46286--46319	17	2.0	17	88	0	50	20	26	20	32	1.97

Tables:   1

The End!