genome.fa.s9613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009613.1 Hibiscus syriacus cultivar Beakdansim tig00116999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156376

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--421	23	2.2	23	92	0	82	36	18	22	24	1.95
372--439	23	2.8	24	82	13	77	33	17	20	27	1.95
4359--4392	17	2.0	17	88	0	50	20	26	20	32	1.97
7865--7900	18	1.9	19	88	5	56	55	8	0	36	1.30
15820--15888	33	2.1	33	88	0	102	23	23	21	31	1.98
19663--19693	13	2.4	13	94	0	53	45	19	12	22	1.84
28306--28334	2	14.5	2	100	0	58	48	0	0	51	1.00
37915--37956	15	2.8	15	85	7	59	35	33	14	16	1.89
38690--38728	3	13.0	3	94	0	69	33	2	0	64	1.08
41163--41197	17	2.1	17	88	0	52	62	2	2	31	1.24
50871--50916	14	3.3	14	90	0	74	8	13	26	52	1.69
51660--51734	10	7.7	10	69	21	61	9	12	21	57	1.62
51666--51730	16	4.1	16	95	0	121	7	12	23	56	1.61
51801--51831	16	1.9	16	100	0	62	6	16	25	51	1.68
52326--52366	17	2.4	18	88	8	59	36	0	0	63	0.95
52342--52383	14	2.8	15	82	10	50	23	0	2	73	0.94
56275--56308	15	2.2	16	89	5	52	55	5	17	20	1.62
58582--58693	40	2.8	40	95	1	197	25	24	8	42	1.81
59190--59280	45	2.0	44	93	6	157	45	3	2	49	1.30
59203--59287	22	3.9	21	76	17	84	42	2	2	52	1.27
61093--61250	21	7.8	20	70	7	77	38	24	17	19	1.92
61217--61410	20	9.6	20	81	5	221	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61217--61410	60	3.2	60	83	0	253	35	25	19	19	1.95
61786--61856	33	2.2	33	92	0	115	11	22	18	47	1.80
61936--62045	21	5.8	20	74	17	108	45	18	24	11	1.83
61929--62045	41	3.1	38	81	14	145	46	17	25	11	1.81
61996--62052	14	3.7	14	75	20	60	43	22	24	8	1.81
61988--62057	33	2.1	33	100	0	140	47	20	24	8	1.78
62548--62594	24	2.0	24	87	8	69	38	21	14	25	1.92
63277--63486	20	10.5	20	85	3	208	19	18	24	37	1.94
63434--63550	20	5.7	20	75	14	78	20	16	23	39	1.92
63453--63551	42	2.4	43	75	8	98	22	16	23	38	1.93
64536--64599	29	2.2	29	97	0	119	29	37	25	7	1.84
64640--64783	26	6.7	20	85	10	121	18	16	46	18	1.84
64634--64711	26	3.0	26	98	1	147	19	17	47	15	1.83
64693--64783	19	4.7	20	89	10	152	18	15	46	19	1.84
64693--64783	39	2.3	39	96	3	166	18	15	46	19	1.84
64874--64999	65	1.9	65	93	0	216	23	30	17	27	1.97
65400--65443	21	2.1	21	91	0	70	29	0	15	54	1.42
67275--67318	12	3.7	12	100	0	88	15	18	25	40	1.90
69250--69282	13	2.4	14	90	5	50	45	0	15	39	1.46
69324--69358	17	2.0	18	94	5	63	57	0	5	37	1.23
69554--69591	12	3.2	12	96	3	69	50	0	7	42	1.31
69528--69848	26	12.8	26	75	12	228	45	1	9	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69533--69818	98	2.9	97	82	10	316	45	2	8	44	1.46
69542--69835	124	2.3	123	85	10	391	45	2	8	43	1.46
69807--70185	60	6.6	60	87	8	579	41	0	11	46	1.39
69554--69898	14	25.4	14	72	16	169	45	1	8	44	1.43
69829--70181	108	3.2	109	85	10	487	42	0	10	47	1.38
69807--70389	168	3.4	167	79	11	648	41	1	11	45	1.50
70153--70200	14	3.6	14	81	16	66	35	0	16	47	1.47
70153--70201	25	2.0	25	95	0	89	36	0	16	46	1.47
70257--70303	24	1.9	24	87	12	69	48	0	12	38	1.41
70274--70399	60	2.2	57	94	4	216	42	0	11	46	1.41
72533--72563	8	3.9	8	95	0	53	64	19	0	16	1.29
72613--72661	22	2.2	22	96	0	89	38	14	2	44	1.56
72605--72730	30	4.4	30	74	21	103	46	10	0	42	1.43
72611--72691	22	3.3	22	68	23	63	41	12	1	44	1.50
72905--72959	18	3.4	18	65	31	52	52	9	0	38	1.33
77942--78015	35	2.1	35	100	0	148	41	44	0	13	1.44
84243--84303	30	2.0	30	96	0	113	45	22	13	18	1.83
88683--88744	27	2.3	26	97	0	97	30	33	17	17	1.94
89611--89637	12	2.2	12	100	0	54	51	22	18	7	1.70
99514--99556	20	2.3	19	88	11	63	51	11	16	20	1.75
101776--101840	21	3.1	21	93	0	103	41	10	30	16	1.83
101874--101939	33	2.0	33	87	0	96	30	0	46	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103731--103779	19	2.6	19	96	0	89	32	2	10	55	1.45
104013--104953	200	4.7	200	94	0	1603	36	14	17	31	1.90
106140--107454	183	7.2	183	95	0	2354	35	15	16	33	1.90
109915--109979	25	2.6	25	95	0	121	38	12	13	35	1.83
110326--110398	23	3.2	23	90	0	110	35	5	20	38	1.76
110815--110887	23	3.2	23	90	0	110	35	5	20	38	1.76
109979--111780	486	3.7	489	94	1	3112	41	7	10	40	1.67
111301--111369	23	3.0	23	91	0	102	34	4	21	39	1.73
116642--116686	19	2.4	19	81	7	56	42	11	2	44	1.52
118698--118777	40	2.1	38	83	9	99	36	12	16	35	1.86
118784--118856	24	3.0	24	88	4	67	10	15	24	49	1.76
118794--118849	14	4.3	14	82	17	75	8	14	25	51	1.70
118795--118859	24	2.7	24	92	0	94	10	12	23	53	1.69
119590--119664	10	7.7	10	69	21	61	9	12	21	57	1.62
119596--119660	16	4.1	16	95	0	121	7	12	23	56	1.61
119730--119762	16	2.1	16	94	0	57	6	9	24	60	1.49
127443--127713	45	6.0	45	87	0	335	23	18	29	28	1.98
143013--143441	143	3.0	143	94	1	736	25	15	18	41	1.89

Tables:   1

The End!